RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-028 4.4.0-53-generic #74-Ubuntu SMP Fri Dec 2 16:06:08 UTC 2016 s390x Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 16 Jan 23:11:03 ntpdate[30931]: adjust time server 10.211.37.1 offset 0.000084 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11870429', '/home/buildd/filecache-default/309330829b4f61930f4191d7be733906953ac6c4'] Unpacking chroot for build PACKAGEBUILD-11870429 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11870429'] Mounting chroot for build PACKAGEBUILD-11870429 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11870429', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11870429 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11870429', 's390x'] Updating debian chroot for build PACKAGEBUILD-11870429 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main s390x Packages [1147 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [589 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe s390x Packages [7769 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4678 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x Packages [88.3 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [51.3 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe s390x Packages [275 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [146 kB] Fetched 15.3 MB in 34s (446 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libisl15 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libp11-kit0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 102 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 48.4 MB of archives. After this operation, 40.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main s390x base-files s390x 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main s390x debianutils s390x 4.8.1 [85.8 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main s390x bash s390x 4.4-2ubuntu1 [595 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main s390x bsdutils s390x 1:2.29-1ubuntu2 [54.8 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main s390x diffutils s390x 1:3.5-3 [164 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main s390x findutils s390x 4.6.0+git+20161106-1 [277 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main s390x grep s390x 2.27-1 [148 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libc6-dev s390x 2.24-7ubuntu2 [2056 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libc-dev-bin s390x 2.24-7ubuntu2 [62.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x linux-libc-dev s390x 4.9.0-12.13 [861 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main s390x libgomp1 s390x 6.3.0-2ubuntu1 [71.1 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main s390x libitm1 s390x 6.3.0-2ubuntu1 [27.3 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main s390x gcc-6-base s390x 6.3.0-2ubuntu1 [17.7 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main s390x libgcc1 s390x 1:6.3.0-2ubuntu1 [24.6 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main s390x libcc1-0 s390x 6.3.0-2ubuntu1 [31.0 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main s390x binutils s390x 2.27.90.20170114-1ubuntu1 [1069 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main s390x libatomic1 s390x 6.3.0-2ubuntu1 [8190 B] Get:18 http://ftpmaster.internal/ubuntu zesty/main s390x g++-6 s390x 6.3.0-2ubuntu1 [5830 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main s390x libstdc++-6-dev s390x 6.3.0-2ubuntu1 [1416 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main s390x libgcc-6-dev s390x 6.3.0-2ubuntu1 [269 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main s390x gcc-6 s390x 6.3.0-2ubuntu1 [5626 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main s390x cpp-6 s390x 6.3.0-2ubuntu1 [5073 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main s390x libstdc++6 s390x 6.3.0-2ubuntu1 [404 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x zlib1g s390x 1:1.2.8.dfsg-4ubuntu1 [48.9 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libgmp10 s390x 2:6.1.2+dfsg-1 [227 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main s390x libisl15 s390x 0.18-1 [510 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libc6 s390x 2.24-7ubuntu2 [2306 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main s390x libuuid1 s390x 2.29-1ubuntu2 [14.9 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main s390x libblkid1 s390x 2.29-1ubuntu2 [104 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main s390x libfdisk1 s390x 2.29-1ubuntu2 [134 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main s390x libselinux1 s390x 2.6-3 [64.5 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main s390x util-linux s390x 2.29-1ubuntu2 [888 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main s390x mount s390x 2.29-1ubuntu2 [127 kB] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x perl-modules-5.24 all 5.24.1-1 [2662 kB] Get:35 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libperl5.24 s390x 5.24.1-1 [3315 kB] Get:36 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x perl s390x 5.24.1-1 [219 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x perl-base s390x 5.24.1-1 [1271 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main s390x sed s390x 4.3-3 [177 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main s390x tar s390x 1.29b-1.1 [222 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main s390x base-passwd s390x 3.5.42 [47.7 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main s390x init-system-helpers all 1.46 [37.3 kB] Get:42 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libc-bin s390x 2.24-7ubuntu2 [551 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main s390x liblzma5 s390x 5.2.2-1.2 [90.8 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main s390x libapt-pkg5.0 s390x 1.4~beta3ubuntu1 [724 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main s390x adduser all 3.113+nmu3ubuntu5 [161 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main s390x ubuntu-keyring all 2016.10.27 [16.6 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main s390x apt s390x 1.4~beta3ubuntu1 [1049 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main s390x libapparmor1 s390x 2.10.95-4ubuntu5.2 [29.5 kB] Get:49 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libgpg-error0 s390x 1.26-1 [33.5 kB] Get:50 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libgcrypt20 s390x 1.7.5-3 [338 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main s390x libmount1 s390x 2.29-1ubuntu2 [111 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libseccomp2 s390x 2.3.1-2.1ubuntu1 [38.9 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x systemd s390x 232-10ubuntu1 [2249 kB] Get:54 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libsystemd0 s390x 232-10ubuntu1 [194 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main s390x init s390x 1.46 [5320 B] Get:56 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x systemd-sysv s390x 232-10ubuntu1 [13.9 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main s390x libsepol1 s390x 2.6-2 [200 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main s390x libustr-1.0-1 s390x 1.0.4-6 [60.0 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/main s390x libsemanage-common all 2.6-2 [6794 B] Get:60 http://ftpmaster.internal/ubuntu zesty/main s390x libsemanage1 s390x 2.6-2 [76.5 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main s390x libsmartcols1 s390x 2.29-1ubuntu2 [66.0 kB] Get:62 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libudev1 s390x 232-10ubuntu1 [53.7 kB] Get:63 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x multiarch-support s390x 2.24-7ubuntu2 [6816 B] Get:64 http://ftpmaster.internal/ubuntu zesty/main s390x tzdata all 2016j-2 [204 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main s390x libdevmapper1.02.1 s390x 2:1.02.136-1ubuntu1 [123 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main s390x dmsetup s390x 2:1.02.136-1ubuntu1 [68.8 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main s390x libroken18-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [39.2 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main s390x libasn1-8-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [150 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main s390x libassuan0 s390x 2.4.3-2 [32.0 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main s390x libhogweed4 s390x 3.3-1 [134 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main s390x libnettle6 s390x 3.3-1 [104 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main s390x libp11-kit0 s390x 0.23.3-2 [98.0 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main s390x libtasn1-6 s390x 4.9-5 [33.7 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main s390x libgnutls30 s390x 3.5.6-4ubuntu2 [544 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main s390x libheimbase1-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [27.6 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main s390x libhcrypto4-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [84.2 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main s390x libwind0-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [48.0 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main s390x libhx509-5-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [99.0 kB] Get:79 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libsqlite3-0 s390x 3.16.2-1 [457 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main s390x libkrb5-26-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [187 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main s390x libheimntlm0-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [14.5 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main s390x libgssapi3-heimdal s390x 1.7~git20160703+dfsg-1ubuntu1 [88.2 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main s390x libksba8 s390x 1.3.5-2 [86.3 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main s390x libsasl2-modules-db s390x 2.1.27~72-g88d82a3+dfsg-1 [14.6 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main s390x libsasl2-2 s390x 2.1.27~72-g88d82a3+dfsg-1 [46.6 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main s390x libldap-2.4-2 s390x 2.4.42+dfsg-2ubuntu5 [151 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main s390x libnpth0 s390x 1.3-1 [7906 B] Get:88 http://ftpmaster.internal/ubuntu zesty/main s390x libslang2 s390x 2.3.1-5ubuntu1 [413 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu10 [776 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main s390x pinentry-curses s390x 1.0.0-1 [31.8 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main s390x xz-utils s390x 5.2.2-1.2 [82.1 kB] Get:92 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libgssapi-krb5-2 s390x 1.15-1 [109 kB] Get:93 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libkrb5-3 s390x 1.15-1 [259 kB] Get:94 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libkrb5support0 s390x 1.15-1 [31.3 kB] Get:95 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x libk5crypto3 s390x 1.15-1 [83.8 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main s390x libcurl3-gnutls s390x 7.51.0-1ubuntu1 [174 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main s390x apt-transport-https s390x 1.4~beta3ubuntu1 [31.5 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main s390x openssl s390x 1.0.2g-1ubuntu10 [477 kB] Get:99 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x ca-certificates all 20161130 [193 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main s390x libpng16-16 s390x 1.6.28-1 [169 kB] Get:101 http://ftpmaster.internal/ubuntu zesty/main s390x cpp s390x 4:6.2.1-1ubuntu1 [27.4 kB] Get:102 http://ftpmaster.internal/ubuntu zesty/main s390x gcc s390x 4:6.2.1-1ubuntu1 [5172 B] Get:103 http://ftpmaster.internal/ubuntu zesty/main s390x g++ s390x 4:6.2.1-1ubuntu1 [1478 B] Get:104 http://ftpmaster.internal/ubuntu zesty/main s390x pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.4 MB in 1min 16s (634 kB/s) (Reading database ... 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Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-10ubuntu1_s390x.deb ... Unpacking systemd-sysv (232-10ubuntu1) over (231-9git1) ... 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Setting up perl-modules-5.24 (5.24.1-1) ... Setting up libperl5.24:s390x (5.24.1-1) ... Setting up libnettle6:s390x (3.3-1) ... Setting up libcc1-0:s390x (6.3.0-2ubuntu1) ... Setting up libssl1.0.0:s390x (1.0.2g-1ubuntu10) ... Setting up libpng16-16:s390x (1.6.28-1) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 16 23:13:13 UTC 2017. Universal Time is now: Mon Jan 16 23:13:13 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-10ubuntu1) ... Setting up libsasl2-modules-db:s390x (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:s390x (4.9.0-12.13) ... Setting up libsasl2-2:s390x (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:s390x (1.3.5-2) ... Setting up libdevmapper1.02.1:s390x (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:s390x (1.15-1) ... Setting up libtasn1-6:s390x (4.9-5) ... Setting up perl (5.24.1-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libgmp10:s390x (2:6.1.2+dfsg-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libp11-kit0:s390x (0.23.3-2) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:s390x (3.16.2-1) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.90.20170114-1ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:s390x (2.24-7ubuntu2) ... Setting up libslang2:s390x (2.3.1-5ubuntu1) ... Setting up libassuan0:s390x (2.4.3-2) ... Setting up libitm1:s390x (6.3.0-2ubuntu1) ... Setting up libk5crypto3:s390x (1.15-1) ... Setting up libgcc-6-dev:s390x (6.3.0-2ubuntu1) ... Setting up libstdc++-6-dev:s390x (6.3.0-2ubuntu1) ... Setting up libwind0-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhogweed4:s390x (3.3-1) ... Setting up libisl15:s390x (0.18-1) ... Setting up pinentry-curses (1.0.0-1) ... Setting up libkrb5-3:s390x (1.15-1) ... Setting up cpp-6 (6.3.0-2ubuntu1) ... Setting up libkrb5-26-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up cpp (4:6.2.1-1ubuntu1) ... Setting up libgnutls30:s390x (3.5.6-4ubuntu2) ... Setting up gcc-6 (6.3.0-2ubuntu1) ... Setting up libgssapi-krb5-2:s390x (1.15-1) ... Setting up g++-6 (6.3.0-2ubuntu1) ... Setting up libgssapi3-heimdal:s390x (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc (4:6.2.1-1ubuntu1) ... Setting up libldap-2.4-2:s390x (2.4.42+dfsg-2ubuntu5) ... Setting up g++ (4:6.2.1-1ubuntu1) ... Setting up libcurl3-gnutls:s390x (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta3ubuntu1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11870429', 's390x', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=zesty-proposed', '--purge=never', '--nolog', 'ncbi-blast+_2.6.0-1.dsc'] Initiating build PACKAGEBUILD-11870429 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-53-generic #74-Ubuntu SMP Fri Dec 2 16:06:08 UTC 2016 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-028.buildd +==============================================================================+ | ncbi-blast+ 2.6.0-1 (s390x) 16 Jan 2017 23:13 | +==============================================================================+ Package: ncbi-blast+ Version: 2.6.0-1 Source Version: 2.6.0-1 Distribution: zesty-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-rSgaEP' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11870429/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-blast+_2.6.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ Sources [214 B] Get:5 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-rSgaEP/resolver-xgIF05/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. Ign:1 copy:/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive ./ Release [2119 B] Ign:3 copy:/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive ./ Sources [265 B] Get:5 copy:/build/ncbi-blast+-rSgaEP/resolver-at1tue/apt_archive ./ Packages [582 B] Fetched 2966 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-blast+ build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu57 libidn11-dev libmagic-mgc libmagic1 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf time zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc libmpfr-dev gnutls-doc gnutls-bin libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-test-dev libboost-test1.62-dev libboost-test1.62.0 libboost1.62-dev libbsd0 libbz2-dev libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-openssl27 libgnutls28-dev libgnutlsxx28 libicu57 libidn11-dev libmagic-mgc libmagic1 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtimedate-perl libtool libunistring0 libxml2 m4 man-db nettle-dev pkg-config po-debconf sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 26.8 MB of archives. After this operation, 200 MB of additional disk space will be used. 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s390x 3.5.6-4ubuntu2 [20.5 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main s390x libgnutlsxx28 s390x 3.5.6-4ubuntu2 [13.4 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main s390x nettle-dev s390x 3.3-1 [952 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main s390x zlib1g-dev s390x 1:1.2.8.dfsg-4ubuntu1 [166 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main s390x libtasn1-6-dev s390x 4.9-5 [85.6 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main s390x libp11-kit-dev s390x 0.23.3-2 [57.8 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main s390x pkg-config s390x 0.29.1-0ubuntu1 [44.2 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main s390x libidn11-dev s390x 1.33-1 [518 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main s390x libgnutls28-dev s390x 3.5.6-4ubuntu2 [561 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main s390x libpcre16-3 s390x 2:8.39-2 [79.5 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main s390x libpcre32-3 s390x 2:8.39-2 [74.7 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main s390x libpcre3-dev s390x 2:8.39-2 [372 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.8 MB in 38s (690 kB/s) Selecting previously unselected package groff-base. 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Setting up libpipeline1:s390x (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:s390x (57.1-5) ... Setting up libbsd0:s390x (0.8.3-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:s390x (1:5.29-2) ... Setting up libcroco3:s390x (0.6.11-2) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libgnutlsxx28:s390x (3.5.6-4ubuntu2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up libboost-test1.62.0:s390x (1.62.0+dfsg-4) ... Setting up libgnutls-openssl27:s390x (3.5.6-4ubuntu2) ... Setting up libpcrecpp0v5:s390x (2:8.39-2) ... Setting up libpcre32-3:s390x (2:8.39-2) ... Setting up libpcre16-3:s390x (2:8.39-2) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libidn11-dev (1.33-1) ... Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.029-2) ... Setting up libgmp-dev:s390x (2:6.1.2+dfsg-1) ... Setting up libpcre3-dev:s390x (2:8.39-2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-2) ... Setting up libboost-test1.62-dev:s390x (1.62.0+dfsg-4) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up nettle-dev (3.3-1) ... Setting up libboost-test-dev:s390x (1.62.0.1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgnutls28-dev:s390x (3.5.6-4ubuntu2) ... Setting up dh-autoreconf (13) ... Setting up dh-strip-nondeterminism (0.029-2) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-ncbi-blast+-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-53-generic s390x (s390x) Toolchain package versions: binutils_2.27.90.20170114-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.3.0-2ubuntu1 gcc-6_6.3.0-2ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 linux-libc-dev_4.9.0-12.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.4~beta3ubuntu1 apt-transport-https_1.4~beta3ubuntu1 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.90.20170114-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.3.0-2ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_13 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 g++_4:6.2.1-1ubuntu1 g++-6_6.3.0-2ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.3.0-2ubuntu1 gcc-6-base_6.3.0-2ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta3ubuntu1 libarchive-zip-perl_1.59-1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.3.0-2ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libboost-test-dev_1.62.0.1 libboost-test1.62-dev_1.62.0+dfsg-4 libboost-test1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libbz2-dev_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-2ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libgcc-6-dev_6.3.0-2ubuntu1 libgcc1_1:6.3.0-2ubuntu1 libgcrypt20_1.7.5-3 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp-dev_2:6.1.2+dfsg-1 libgmp10_2:6.1.2+dfsg-1 libgmpxx4ldbl_2:6.1.2+dfsg-1 libgnutls-openssl27_3.5.6-4ubuntu2 libgnutls28-dev_3.5.6-4ubuntu2 libgnutls30_3.5.6-4ubuntu2 libgnutlsxx28_3.5.6-4ubuntu2 libgomp1_6.3.0-2ubuntu1 libgpg-error0_1.26-1 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libidn11-dev_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_6.3.0-2ubuntu1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit-dev_0.23.3-2 libp11-kit0_0.23.3-2 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1-1 libpipeline1_1.4.1-2 libpng16-16_1.6.28-1 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 libsystemd0_232-10ubuntu1 libtasn1-6_4.9-5 libtasn1-6-dev_4.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libudev1_232-10ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-12.13 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 nettle-dev_3.3-1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1-1 perl-base_5.24.1-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1-1 pinentry-curses_1.0.0-1 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.3-3 sensible-utils_0.0.9 systemd_232-10ubuntu1 systemd-sysv_232-10ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 time_1.7-25.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 zlib1g-dev_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jan 16 18:15:15 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.6.0-1.dsc dpkg-source: info: extracting ncbi-blast+ in ncbi-blast+-2.6.0 dpkg-source: info: unpacking ncbi-blast+_2.6.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.6.0-1.debian.tar.xz dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0 SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.6.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build ncbi-blast+-2.6.0 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean -Dc++ --with autotools_dev dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autotools-dev_restoreconfig -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found debian/rules:102: recipe for target 'override_dh_clean' failed make[1]: [override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' debian/rules build-arch dh build-arch -Dc++ --with autotools_dev dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ dh_autotools-dev_updateconfig -a -O-Dc\+\+ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: loading site script ./src/build-system/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wstring... yes checking for socklen_t... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking cpuid.h usability... no checking cpuid.h presence... no checking for cpuid.h... no checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/statvfs.h usability... yes 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library containing cplus_demangle... no checking for nanosleep... yes checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libz... yes checking for libbz2... yes checking for libpcre... yes checking for libgmp... yes checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... yes checking for libgnutls-config... no checking for libgnutls... yes checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for 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/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask/Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/./Makefile config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc/common/ncbi_build_ver.h config.status: creating /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc/ncbiconf_unix.h config.status: executing default commands /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib/ncbicfg.c is updated /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc/common/ncbi_build_ver.h is updated make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lm -lpthread -o run_with_lock /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f run_with_lock /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' Platform not defined for Linux s390x -- please fix me project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.1.5/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib TMPL=corelib -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/blob_storage.cpp -o blob_storage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ddumpable.cpp -o ddumpable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/env_reg.cpp -o env_reg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/metareg.cpp -o metareg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp:2058:56: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, prompt.data(), prompt.length()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp:2087:50: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write( tty, thx.data(), thx.length()); ^ O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOU/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:42:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations] CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here CDiagContextThreadData::GetProperties(EGetProperties flag) ^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:3226:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations] app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_param.hpp:41:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbifile.hpp:48, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:354:34: note: declared here NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); ^~~~~~~~~~~~~~~~~~~~~ RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include ncbicfg.c -o ncbicfg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbidll.cpp -o ncbidll.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbienv.cpp -o ncbienv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbifile.cpp -o ncbifile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbireg.cpp -o ncbireg.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbistr.cpp -o ncbistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbistre.cpp -o ncbistre.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbithr.cpp -o ncbithr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbitime.cpp -o ncbitime.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/obj_store.cpp -o obj_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/version.cpp:457:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/version.cpp:457:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] : date(__DATE__ " " __TIME__) ^~~~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/stream_utils.cpp -o stream_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/request_ctx.cpp -o request_ctx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/request_control.cpp -o request_control.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/expr.cpp -o expr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/resource_info.cpp -o resource_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/perf_log.cpp -o perf_log.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG 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ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxncbi.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxncbi.so /bin/ln -f .xncbi.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xncbi.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib TMPL=test_mt -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.so .libtest_mt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtest_mt.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libtest_mt.so /bin/ln -f .test_mt.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.test_mt.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib TMPL=test_boost -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/corelib/test_boost.cpp -o test_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_boost.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtest_boost.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libtest_boost.so /bin/ln -f .test_boost.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.test_boost.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make[2] (Makefile.util.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util TMPL=util -w all make[3]: Entering directory 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/utf8.cpp -o utf8.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/checksum.cpp -o checksum.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/itree.cpp -o itree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/smalldns.cpp -o smalldns.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/strsearch.cpp -o strsearch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/logrotate.cpp -o logrotate.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/format_guess.cpp -o format_guess.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/ascii85.cpp -o ascii85.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/md5.cpp -o md5.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REEN/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp: In static member function 'static void ncbi::CDictionaryUtil::Stem(const string&, std::__cxx11::string*)': /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp:709:29: warning: array subscript is below array bounds [-Warray-bounds] const char* end2 = p - 1; ^ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/file_obsolete.cpp -o file_obsolete.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/unicode.cpp -o unicode.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary.cpp -o dictionary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/dictionary_util.cpp -o dictionary_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/thread_nonstop.cpp -o thread_nonstop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/transmissionrw.cpp -o transmissionrw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/miscmath.c -o miscmath.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC 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-fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/line_reader.cpp -o line_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/multi_writer.cpp -o multi_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/itransaction.cpp -o itransaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/thread_pool.cpp -o thread_pool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/thread_pool_ctrl.cpp -o thread_pool_ctrl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/util_misc.cpp -o util_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/histogram_binning.cpp -o histogram_binning.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG 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/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/file_manifest.cpp -o file_manifest.o /bin/rm -f libxutil.so .libxutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC random_gen.o utf8.o checksum.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxutil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxutil.so /bin/ln -f .xutil.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xutil.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[2] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. /usr/bin/make[2] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp TMPL=xregexp -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp/regexp.cpp -o regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /bin/rm -f libxregexp.so .libxregexp.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -lpcre /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxregexp.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxregexp.so /bin/ln -f .xregexp.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xregexp.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxregexp_template_tester.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC regexp_template_tester.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxregexp -lxncbi -lpcre /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxregexp_template_tester.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxregexp_template_tester.so /bin/ln -f .xregexp_template_tester.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xregexp_template_tester.dep make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp -o msvc_masterproject_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_project_context.cpp -o msvc_project_context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_site.cpp -o msvc_site.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp -o msvc_sln_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_builder_app.cpp -o proj_builder_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp -o proj_datatool_generated_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_item.cpp -o proj_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_tree.cpp -o proj_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp -o proj_tree_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp -o proj_src_resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_utils.cpp -o proj_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/resolver.cpp -o resolver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp -o msvc_configure_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/proj_projects.cpp -o proj_projects.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp -o msvc_dlls_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp -o msvc_prj_files_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/configurable_file.cpp -o configurable_file.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/ptb_gui.cpp -o ptb_gui.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -lxregexp -lpcre -ldl -lm -lpthread -o project_tree_builder /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f project_tree_builder /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/project_tree_builder make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' ********************************************************************** Running project_tree_builder. Please wait. ********************************************************************** ./build-system/project_tree_builder/project_tree_builder -dll -dtdep -conffile /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder.ini -logfile Flat.configuration_log /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ src Makefile.flat Done =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB GMOCK LAPACK LMDB PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.mk Configuration header: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory Alternatively, cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -f Makefile.flat ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' cd c++/BUILD/build && \ make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' /usr/bin/make -w -j --jobserver-fds=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.creaders.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/legacy_blast.pl /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast -w -j --jobserver-fds=3,4 all make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/update_blastdb.pl /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/update_blastdb.pl make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker -w -j --jobserver-fds=3,4 all make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j --jobserver-fds=3,4 all /usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: ‘s_CompoHeapIsValid’ defined but not used [-Wunused-function] s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) ^~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd util/tables/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/tables TMPL=tables -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.so .libtables.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtables.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC raw_scoremat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtables.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libtables.so /bin/ln -f .tables.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.tables.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wfor/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: ‘s_DistinctAlignmentsLength’ defined but not used [-Wunused-function] s_DistinctAlignmentsLength(BlastCompo_Alignment * list) ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: ‘s_AlignmentsAreSorted’ defined but not used [-Wunused-function] s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) ^~~~~~~~~~~~~~~~~~~~~ cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect TMPL=xconnect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/.#lock-map. cd util/sequtil/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil TMPL=sequtil -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_types.c -o ncbi_types.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_core.c -o ncbi_core.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/nIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c: In function ‘CORE_SetLOGFILE_NAME_Ex’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c:148:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ mat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcomposition_adjustment.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libcomposition_adjustment.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libcomposition_adjustment.so /bin/ln -f .composition_adjustment.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.composition_adjustment.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:77: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_DoLog’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:503:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(112, level, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:543:13: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(109, level, data, size, ^~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:576:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(113, level, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:584:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_InitAPI_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:866:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Secure socket layer (SSL) has not" ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostname’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1011:13: note: in expansion of macro ‘CORE_LOG_ERRNO_EXX’ CORE_LOG_ERRNO_EXX(103, eLOG_Error, ^~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1020:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(104, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1153:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_getlocalhostaddress’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1193:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyname’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1219:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(155, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1350:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_gethostbyaddr’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1384:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘x_TryLowerSockFileno’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1493:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(111, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Select_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1618:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1747:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Poll_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:1891:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2036:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_IsConnected_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2610:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2620:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2655:25: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Trace, ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Recv’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2806:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Read_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:2987:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Send’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3337:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_WritePending’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3489:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(12, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Shutdown’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3661:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3698:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3747:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Close_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3811:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3827:21: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3857:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:3916:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Connect_’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4022:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(131, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4039:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(142, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4063:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4084:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(23, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4128:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(24, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4143:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4154:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4174:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(129, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4215:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(25, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4259:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(26, sock->log != eOff ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Create’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4345:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateOnTop’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4398:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(47, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4421:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(148, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4459:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(48, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4500:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(50, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4514:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4577:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(132, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4599:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4610:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4630:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4645:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CreateListening’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4697:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(144, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4731:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(34, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4777:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(35, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4832:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4853:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(150, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4904:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(38, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4923:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(37, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4974:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(110, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:4988:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(115, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_Accept’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5035:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(39, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5091:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(40, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5150:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(41, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5209:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5220:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5231:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5251:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_CloseListening’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5296:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(44, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5325:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(45, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_RecvMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5413:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5461:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘s_SendMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5496:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5512:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(88, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5521:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(89, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5571:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(90, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5617:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Create’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5660:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5670:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5682:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5692:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5711:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(116, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘TRIGGER_Close’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5773:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(117, eLOG_Note, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘LSOCK_GetOSHandleEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:5984:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(46, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Reconnect’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6172:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(52, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6182:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(53, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6194:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(51, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Shutdown’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6224:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(54, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6231:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(55, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6239:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Wait’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6369:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(56, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6397:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(57, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6411:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(58, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6425:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(59, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6434:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(60, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6444:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(61, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6454:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(62, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetTimeout’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6591:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(63, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetTimeout’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6632:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(64, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Read’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6674:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(65, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6684:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(66, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_ReadLine’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6715:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(125, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Pushback’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6791:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(67, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Write’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6843:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(68, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6870:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(69, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6880:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(70, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_Abort’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6899:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(71, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:6906:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(72, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_GetOSHandleEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7057:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(73, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetCork’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7120:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(158, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7127:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(159, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7140:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_DisableOSSendDelay’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7157:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(156, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7164:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(157, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7177:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_CreateEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7218:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(76, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7257:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(77, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7307:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(130, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Bind’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7337:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(79, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7344:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(78, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7362:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7378:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(114, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_Connect’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7407:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(82, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7414:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(81, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7433:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(83, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7446:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(84, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7475:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(85, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WaitMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7503:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(96, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7510:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(95, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_RecvMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7549:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(93, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7556:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(92, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SendMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7593:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(87, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7600:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(86, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_WipeMsg’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7632:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(98, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7639:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(97, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7659:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(99, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘DSOCK_SetBroadcast’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7677:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(101, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7684:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(100, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7704:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(102, eLOG_Error, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetReuseAddress’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:7866:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_EXX’ CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c: In function ‘SOCK_SetupSSL’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c:8257:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Cannot reset SSL while it is in use"); ^~~~~~~~ cd util/creaders/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=creaders UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/creaders TMPL=creaders -w -j --jobserver-fds=3,4 all cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp: In member function ‘void ncbi::CGeneInfo::ToString(std::__cxx11::string&, bool, const string&, unsigned int) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:177:60: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(GetDescription(), " ", strDescrWords); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.so .libcreaders.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libcreaders.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC alnread.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libcreaders.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libcreaders.so /bin/ln -f .creaders.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.creaders.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘ConnNetInfo_Log’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:114:54: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1373:9: note: in expansion of macro ‘LOG_WRITE’ LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_ConnectEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1594:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1607:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1635:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1646:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1692:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1705:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1744:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c: In function ‘URL_Connect’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1777:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(9, eLOG_Error, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c:1817:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, ^~~~~~~~~~~~~~~~~ cd connect/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=connect UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect TMPL=connect -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_connect to make__connect_common per /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/.#lock-map. Waiting for /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect/make__connect_common.lockIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘x_ReInit’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:273:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:303:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, Close, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:307:21: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(3, ReInit, eLOG_Error, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:384:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_CreateEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:426:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(2, Create, eLOG_Error, "NULL connector"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReInit’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:448:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(1, ReInit); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetType’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:456:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(6, GetType, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Description’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:465:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(7, Description, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetPosition’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:477:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(30, GetPosition, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:490:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(31, GetPosition, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetTimeout’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:506:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(8, SetTimeout); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:546:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetTimeout’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:561:5: note: in expansion of macro ‘CONN_NOT_NULL_EX’ CONN_NOT_NULL_EX(10, GetTimeout, 0); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:569:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(11, GetTimeout, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:584:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Wait’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:600:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(13, Wait); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:644:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(event != eIO_Read ? 15 : 14, Wait, level, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Write’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:665:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:707:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(17, Write, level, "Unable to write data"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Write’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:749:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(18, Write); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Pushback’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:784:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(19, Pushback); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Flush’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:804:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(20, Flush); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:819:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(21, Flush, eLOG_Warning, "Failed to flush"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘s_CONN_Read’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:844:9: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:885:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(32, Read, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:79:39: note: in expansion of macro ‘CONN_LOG_EX’ #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:911:13: note: in expansion of macro ‘CONN_LOG’ CONN_LOG(23, Read, level, "Unable to read data"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Read’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:962:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(24, Read); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_ReadLine’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1011:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(25, ReadLine); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1059:17: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(35, ReadLine, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Status’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1078:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(26, Status); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_Close’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1117:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(27, Close); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_SetCallback’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1137:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(28, SetCallback); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1143:9: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c: In function ‘CONN_GetSOCK’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:102:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:68:7: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:109:11: note: in expansion of macro ‘CONN_LOG_EX’ CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:114:34: note: in expansion of macro ‘CONN_NOT_NULL_EX’ #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c:1164:5: note: in expansion of macro ‘CONN_NOT_NULL’ CONN_NOT_NULL(36, GetSOCK); ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Remove’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:63:13: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(34, eLOG_Error, ^~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c: In function ‘METACONN_Insert’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:41:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro ‘METACONN_LOG’ METACONN_LOG(33, eLOG_Error, ^~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c:171:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(163, eLOG_Error, ^~~~~~~~~~~ cbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_util.c -o ncbi_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Adjust’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:367:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:382:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:408:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:423:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:433:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:457:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Connect’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:560:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:700:25: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(20, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ConnectAndSend’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:911:9: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(6, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘x_ReadChunkHead’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1042:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadData’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1113:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(24, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1137:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(25, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_ReadHeader’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1211:17: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(7, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1248:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, level, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1310:9: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1327:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1346:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(9, eLOG_Note, hdr, size, ^~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1394:25: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Critical, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1553:21: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro ‘DO_CORE_LOG_ERRNO’ DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1569:13: note: in expansion of macro ‘CORE_LOGF_ERRNO_X’ CORE_LOGF_ERRNO_X(11, eLOG_Error, error, ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1624:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1629:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:195:5: note: in expansion of macro ‘DO_CORE_LOG_DATA’ DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1648:17: note: in expansion of macro ‘CORE_DATAF_X’ CORE_DATAF_X(14, eLOG_Note, s, n, ^~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1657:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(15, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c: In function ‘s_Read’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1828:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c:1872:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Warning, ^~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.so .libsequtil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsequtil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libsequtil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libsequtil.so /bin/ln -f .sequtil.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.sequtil.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' cd html/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html TMPL=html -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:115: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Create’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:243:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:264:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_AttachFast’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:288:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:297:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Attach’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:326:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(34, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Find’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:422:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Alloc’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:630:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:636:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:683:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Free’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:805:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:811:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:824:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:832:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:844:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(14, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_FreeFast’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:856:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:862:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(16, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:876:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(17, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:887:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(18, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:894:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(19, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Trim’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:916:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(30, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:951:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(31, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:978:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(32, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Walk’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1000:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(28, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1014:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(26, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1017:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(27, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1029:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(23, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1116:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(21, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1131:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(20, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1149:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(22, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1160:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(24, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1176:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Destroy’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c:1278:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(33, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp: In static member function ‘static void ncbi::CGeneFileUtils::ReadGeneInfo(ncbi::CNcbiIfstream&, int, ncbi::CRef&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:161:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(strBuf, "\t", strItems); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/gene_info.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/gene_info_reader/file_utils.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c: In function ‘x_ServiceName’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:84:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:93:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c: In function ‘x_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c:321:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Error, ^~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.so .libgene_info.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgene_info.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgene_info.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libgene_info.so /bin/ln -f .gene_info.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c: In function ‘s_Resolve’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c:198:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ TRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service.c -o ncbi_service.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOUIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_OpenDispatcher’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:94:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_ParseHeader’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:169:49: warning: format ‘%n’ expects argument of type ‘int *’, but argument 7 has type ‘unsigned int *’ [-Wformat=] if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:170:51: warning: format ‘%n’ expects argument of type ‘int *’, but argument 5 has type ‘unsigned int *’ [-Wformat=] || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:821:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:847:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c:1036:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c: In function ‘s_SendRcpt’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:389:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(3, "Recipient address is too long"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:392:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:400:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(4, write_error); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:403:13: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(5, proto_error, buf); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c: In function ‘CORE_SendMailEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:455:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(6, "Invalid magic cookie"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:460:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(7, "At least one message recipient must be specified"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:470:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:477:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:482:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(10, "Unable to get local host name"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:487:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(11, "Write error in HELO command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:495:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(13, "Write error in MAIL command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:498:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:519:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(15, "Write error in DATA command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:552:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(32, "Write error in sending Date"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:559:21: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(33, "Write error in sending From"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:567:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(17, "Write error in sending Subject"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:574:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(18, "Write error in sending To"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:581:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(19, "Write error in sending Cc"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:585:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(2, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:596:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(20, "Write error in sending mailer information"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:623:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(21, "Write error while sending custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:626:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(22, "Header write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:628:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(23, "Write error while finalizing custom header"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:636:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(24, "Write error in message body delimiter"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:662:17: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(25, "Write error while sending message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:665:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(26, "Body write error"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:668:13: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(27, "Write error while finalizing message body"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:671:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(28, "Write error while finalizing message"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:676:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); ^~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:340:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:679:9: note: in expansion of macro ‘SENDMAIL_RETURN’ SENDMAIL_RETURN(30, "Write error in QUIT command"); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:352:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(subcode, eLOG_Error, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c:681:9: note: in expansion of macro ‘SENDMAIL_RETURN2’ SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); ^~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:50: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPCloseData’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:143:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(7, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:148:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(9, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:162:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(11, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:166:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(8, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:180:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPReply’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:283:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(10, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPCommandEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:359:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(4, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPLogin’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:592:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(3, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPPassive’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:950:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(2, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘x_FTPXfer’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1110:21: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(5, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_FTPPollCntl’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1635:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1901:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(13, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_VT_Write’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:1976:17: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(6, eLOG_Error, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c: In function ‘s_CreateConnector’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c:2286:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); ^~~~~~~~ RCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_local.c -o ncbi_local.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_version.c -o ncbi_version.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringConcat’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:433:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_StringNConcat’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:458:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_RegGet’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:483:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:497:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘g_LBOS_GetLBOSAddressEx’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:565:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:579:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Use of custom LBOS address was " ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:586:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Did not manage to copy custom " ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:594:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS using " ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:604:17: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, "Trying to find LBOS in " ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:723:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("LBOS mapper: " ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:731:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_ReadLBOSResolve: " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (s_LBOS_Lbosresolver == NULL) ^~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ s_LBOS_Lbosresolver = strdup(str + 7); ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConnectURL’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:822:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Parsing URL \"%s\"", url)); ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:824:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot parse URL"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:827:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("Creating HTTP%s connector", ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:834:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:837:5: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Note, "Creating connection"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:839:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Cannot create connection"); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_UrlReadAll’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:898:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:910:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:938:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:952:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ResolveIPPort’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:984:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1043:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_FillCandidates’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1183:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1189:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Ho servers of \"%s\" found by LBOS", ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1207:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckAnnounceArgs’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1237:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1244:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1254:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1264:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, incorrect port."); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1268:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1273:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1278:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Error with announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckDeannounceArgs’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1292:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1298:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1308:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Replace0000WithIP’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1393:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1401:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1408:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ConstructData’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1552:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Initialize’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1623:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1625:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Trace, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1634:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Note, "LBOS is turned ON in config."); ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1636:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(1, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1652:9: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(1, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_ParseHeader’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1700:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Reset’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1763:17: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘SERV_LBOS_Open’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1889:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1897:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1912:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1927:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:1936:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Critical, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_Announce’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2061:9: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2066:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2075:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2085:13: note: in expansion of macro ‘CORE_LOG’ CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2098:9: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Warning, ("Announce failed. " ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Announce’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2164:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_AnnounceFromRegistry’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2233:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2240:53: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_Deannounce’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2355:13: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_DeannounceAll’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2413:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘s_LBOS_CheckConfArgs’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2465:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2472:13: note: in expansion of macro ‘CORE_LOGF_X’ CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c: In function ‘LBOS_ServiceVersionSet’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:143:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c:2564:9: note: in expansion of macro ‘CORE_LOG_X’ CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, ^~~~~~~~~~ ./build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/parson.c: In function ‘remove_comments’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/parson.c:282:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < (ptr - string) + end_token_len; i++) ^~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/parson.c:284:12: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ string = ptr + end_token_len - 1; ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/html.cpp -o html.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/htmlhelper.cpp -o htmlhelper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/selection.cpp -o selection.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/components.cpp -o components.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. .Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/parson.c -o parson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_-fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/commentdiag.cpp -o commentdiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/indentstream.cpp -o indentstream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/html_exception.cpp -o html_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /bin/rm -f libxhtml.so .libxhtml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxhtml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxhtml.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxhtml.so /bin/ln -f .xhtml.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xhtml.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' cd corelib/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' cd util/xregexp/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j --jobserver-fds=3,4 all .OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -Dmake[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -ldl -lm -lpthread -o gene_info_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gene_info_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/gene_info_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘x_GnuTlsLogger’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:160:5: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("GNUTLS%d: %.*s", level, len, message)); ^~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsCreate’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations] gnutls_connection_end_t end = (side == eSOCK_Client ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:59:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c: In function ‘s_GnuTlsInit’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/connect/ncbi_util.h:141:34: warning: ISO C does not support ‘__PRETTY_FUNCTION__’ predefined identifier [-Wpedantic] # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:220:33: note: in expansion of macro ‘CORE_CURRENT_FUNCTION’ _mess.func = CORE_CURRENT_FUNCTION; \ ^~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:235:5: note: in expansion of macro ‘DO_CORE_LOG_X’ DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro ‘DO_CORE_LOG’ DO_CORE_LOG(0, 0, level, \ ^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:609:13: note: in expansion of macro ‘CORE_LOGF’ CORE_LOGF(eLOG_Note, ("GNUTLS V%s (Loglevel=%d)", ^~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_priv.h:214:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized] _mess.message = NcbiMessagePlusError(&_mess.dynamic, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c:582:17: note: ‘version’ was declared here const char* version; ^~~~~~~ cd util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' cd serial/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial TMPL=serial -w -j --jobserver-fds=3,4 all .cd util/compress/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api TMPL=compress -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/typeinfo.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ _REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_gnutls.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxncbi -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxconnect.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectinfo.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectiter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd cgi/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi TMPL=cgi -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/.#lock-map. In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectio.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectio.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ . Acquired /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect/make__connect_common.lock for PID 58782 (make__connect_common) make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /bin/rm -f libconnect.so .libconnect.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libconnect.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_buffer.o ncbi_types.o ncbi_priv.o ncbi_core.o ncbi_util.o ncbi_socket.o ncbi_connutil.o ncbi_connection.o ncbi_connector.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_heapmgr.o ncbi_server_info.o ncbi_service.o ncbi_host_info.o ncbi_dispd.o ncbi_service_connector.o ncbi_sendmail.o ncbi_ftp_connector.o ncbi_lb.o ncbi_local.o ncbi_base64.o ncbi_version.o ncbi_lbos.o parson.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libconnect.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libconnect.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libconnect.so /bin/ln -f .connect.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.connect.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/typeref.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/core/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/typeinfo.cpp -o typeinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objectio.cpp -o objectio.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-ma/usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core TMPL=blast -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_TwoHit’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c: In function ‘s_BlastAaWordFinder_OneHit’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c: In function ‘BLAST_PreliminarySearchEngine’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1489:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1627:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c:1705:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] ((T_MB_IdxEndSearchIndication)( ^ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/stream.cpp -o stream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/bin/g++ -stdIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypesimpl.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/stdtypes.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFEIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/enumerated.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c: In function ‘BlastChooseProteinScanSubject’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastAaScanSubject; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; ^ -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FI/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘s_BlastNaHashLookupFinalize’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1682:36: warning: ISO C forbids passing argument 3 of ‘s_NaHashLookupRemovePolyAWords’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, lookup->mask); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1605:13: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ static Int2 s_NaHashLookupRemovePolyAWords(BackboneCell** thin_backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c: In function ‘BlastNaHashLookupTableNew’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1875:27: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback = FNV_hash; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:1911:43: warning: ISO C forbids passing argument 7 of ‘BlastHashLookupIndexQueryExactMatches’ between function pointer and ‘void *’ [-Wpedantic] lookup->hash_callback, ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/core/blast_nalookup.h:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/core/blast_lookup.h:169:6: note: expected ‘TNaLookupHashFunction {aka unsigned int (*)(unsigned char *, unsigned int)}’ but argument is of type ‘void *’ void BlastHashLookupIndexQueryExactMatches(BackboneCell **backbone, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaChooseScanSubject’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_SmallNaChooseScanSubject’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1322:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1329:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1334:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1336:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_6_2; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1338:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1347:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1349:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1364:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_1Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1368:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_2Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_BlastSmallNaScanSubject_8_3Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_MBChooseScanSubject’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_BlastNaHashLookupRetieveHits’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (TNaLookupHashFunction)lookup->hash_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘s_NaHashChooseScanSubject’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c: In function ‘BlastChooseNucleotideScanSubjectAny’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_BlastSmallNaScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void*)s_BlastNaHashScanSubject_Any; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] return (void *)s_MBScanSubject_Any; ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/ptrinfo.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘s_IsSeedMasked’: In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/autoptrinfo.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In funct/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:485:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) ^ ion ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastNaWordFinder’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1619:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1620:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1632:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1633:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1640:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1641:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] extend = (TNaExtendFunction)lookup->extend_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1654:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘MB_IndexedWordFinder’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1720:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1722:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘BlastChooseNaExtend’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1792:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_MBLookup; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1796:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1801:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1805:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1809:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1813:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1815:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastSmallNaExtend; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1822:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lookup_wrap->lookup_callback = (void *)s_NaLookup; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1826:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendDirect; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1829:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtendAligned; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1831:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] lut->extend_callback = (void *)s_BlastNaExtend; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘JumperNaWordFinder’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1971:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1983:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1991:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:1998:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction)lookup->scansub_callback; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2011:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] scansub = (TNaScanSubjectFunction) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c: In function ‘ShortRead_IndexedWordFinder’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2184:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c:2186:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/continfo.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ LE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_message.c -o blast_message.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_options.c -o blast_options.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/stltypes.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ p=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/stdtypes.cpp -o stdtypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/enumerated.cpp -o enumerated.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/continfo.cpp -o continfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/stltypes.cpp -o stltypes.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-ti/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (strcasecmp("mapper", program) == 0) ^~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ return 0; ^~~~~~ protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_stat.c -o blast_stat.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fope/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] else if (h1->context > h2->context) ^~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (h1->query.offset < h2->query.offset) ^~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/classinfob.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/pattern.c -o pattern.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_program.c -o blast_program.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_zip.cpp:45:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘for’ for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; ^~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2361:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/miniz/miniz.c:2361:23: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (!dist) break; p = s; q = d->m_dict + probe_pos; for (probe_len = 0; probe_len < max_match_len; probe_len++) if (*p++ != *q++) break; ^ MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/member.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ =gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/tar.cpp -o tar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive.cpp -o archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.so .libxcompress.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcompress.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcompress.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcompress.so /bin/ln -f .xcompress.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xcompress.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/jumper.c -o jumper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast.so /bin/ln -f .blast.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgiapp.cpp -o cgiapp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgictx.cpp -o cgictx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/ncbires.cpp -o ncbires.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/ref_args.cpp -o ref_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_run.cpp -o cgi_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/variant.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/classinfo.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ me -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/memberid.cpp -o memberid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/memberlist.cpp -o memberlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/item.cpp -o item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/classinfob.cpp -o classinfob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/member.cpp -o member.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-bIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/choice.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/choiceptr.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/choiceptr.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/aliasinfo.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistr.cpp:46: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostr.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objcopy.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objcopy.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_util.cpp -o cgi_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_session.cpp -o cgi_session.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.so .libxcgi.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcgi.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectiter.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/iterator.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcgi.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcgi.so /bin/ln -f .xcgi.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xcgi.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' last+-2.6.0/c++/src/serial/choice.cpp -o choice.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/choiceptr.cpp -o choiceptr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistr.cpp -o objistr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostr.cpp -o objostr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objcopy.cpp -o objcopy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/iterator.cpp -o iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/serial.cpp -o serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protectoIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/serial.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/pack_string.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/pack_string.cpp:32: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/delaybuf.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/exception.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objhook.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ r-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/delaybuf.cpp -o delaybuf.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/pack_string.cpp -o pack_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/exception.cpp -o exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objhook.cpp -o objhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrasn.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrasn.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrasn.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrasnb.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrasnb.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrasnb.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrasnb.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrxml.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrxml.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrxml.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrjson.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrjson.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ild/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrasn.cpp -o objistrasn.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrxml.cpp -o objostrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrxml.cpp -o objistrxml.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objostrjson.cpp -o objostrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrjson.cpp -o objistrjson.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/seIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrjson.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/objistrjson.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/serialobject.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/rpcbase_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/rpcbase.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rial/serializable.cpp -o serializable.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/serialobject.cpp -o serialobject.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/pathhook.cpp -o pathhook.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxser.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxser.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxser.so /bin/ln -f .xser.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' cd serial/datatool/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool TMPL=datatool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/statictype.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/datatool.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/enumerated.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/enumtype.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/reftype.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/type.cpp -o type.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/namespace.cpp -o namespace.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/reftype.cpp -o reftype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/unitype.cpp -o unitype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-formatIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/unitype.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/typestr.cpp -o typestr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread -o datatool /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f datatool /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh pub all cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh biblio all cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh medline all cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh general all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' /usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqcode all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' Platform not defined for Linux s390x -- please fix me make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastdb all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/Makefile.sources builddir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -w -j --jobserver-fds=3,4 all Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh genome_collection all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux s390x -- please fix me make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqset all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh scoremat all Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh gencoll_client all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' Waiting for /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/make_asn.lockPlatform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' /usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqedit all /usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seqsplit all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' status=0 ; \ MAKE="/usr/bin/make -w -j --jobserver-fds=3,4"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../$x ; \ (cd $d && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqblock' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqblock' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objectPlatform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh submit all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh variation all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' Platform not defined for Linux s390x -- please fix me make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' /usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blast all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' /usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' Platform not defined for Linux s390x -- please fix me cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh id1 all Platform not defined for Linux s390x -- please fix me s/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm/usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh seq all make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh id2 all make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources Platform not defined for Linux s390x -- please fix me make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' Platform not defined for Linux s390x -- please fix me cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh taxon1 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' /usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' /usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' Platform not defined for Linux s390x -- please fix me make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' Warning: (110.8) Found multiple [Taxon1-name] taxid._type settings; using the one from line 18 /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastxml all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh blastxml2 all /usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh entrez2 all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' Platform not defined for Linux s390x -- please fix me make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh gbseq all /usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh medlars all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' Platform not defined for Linux s390x -- please fix me /usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh pubmed all make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh mla all make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3 && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh taxon3 all Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 sources make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid && /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/new_module.sh valid all /usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. cd objects/general/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general TMPL=general -w -j --jobserver-fds=3,4 all Platform not defined for Linux s390x -- please fix me make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/Date.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/uoconv.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/uoconv.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/Date_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/seqcode/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode TMPL=seqcode -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medline -or objects/medline -odi -od medline.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m biblio.asn -M "objects/general/general.asn" -oA -oc biblio -or objects/biblio -odi -od biblio.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m general.asn -M "" -oA -oc general -or objects/general -odi -od general.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd general.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pub -or objects/pub -odi -od pub.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqcode.asn -M "" -oA -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqcode/Seq_code_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqcode/Seq_code_set.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/Seq_code_set.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA -oc seqset -or objects/seqset -odi -od seqset.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat' . Acquired /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/make_asn.lock for PID 60711 (make_asn) Platform not defined for Linux s390x -- please fix me /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.gencoll_client.lib): Nothing to be done for `export-headers'. /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' cd objects/blastxml/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml TMPL=blastxml -w -j --jobserver-fds=3,4 all /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA -oc submit -or objects/submit -odi -od submit.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA -oc variation -or objects/variation -odi -od variation.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA -oc blast -or objects/blast -odi -od blast.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA -oc id1 -or objects/id1 -odi -od id1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA -oc seqres -or objects/seqres -odi -od seqres.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump datatool: 2.16.0 make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA -oc id2 -or objects/id2 -odi -od id2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqloc/seqloc.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqblock/seqblock.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqalign/seqalign.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqres/seqres.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA -oc seq -or objects/seq -odi -od seq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1' File blastxml2.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastxml2.asn -M "" -oA -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2' File blastxml.module not found. Using defaults... /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m blastxml.asn -M "" -oA -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m entrez2.asn -M "" -oA -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m gbseq.asn -M "" -oA -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA -oc medlars -or objects/medlars -odi -od medlars.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed.asn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA -oc mla -or objects/mla -odi -od mla.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3' /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m valid.asn -M "" -oA -oc valid -or objects/valid -odi -od valid.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastxml/BlastOutput_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastxml/BlastOutput.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/BlastOutput.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blastxml2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.so .libseqcode.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqcode.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqcode__.o seqcode___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqcode.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqcode.so /bin/ln -f .seqcode.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqcode.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general__.cpp -o general__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/general___.cpp -o general___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.so .libgeneral.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgeneral.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC general__.o general___.o uoconv.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgeneral.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libgeneral.so /bin/ln -f .general.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.general.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2 TMPL=entrez2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastxml2/BlastOutput2_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastxml2/BlastOutput2.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/BlastOutput2.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.so .libblastxml.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml__.o blastxml___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastxml.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastxml.so /bin/ln -f .blastxml.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' cd objects/gbseq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq TMPL=gbseq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/entrez2/E2Reply_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/entrez2/E2Reply.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/E2Reply.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/gbseq/GBAltSeqData_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/gbseq/GBAltSeqData.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/GBAltSeqData.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/valid/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid TMPL=valid -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/E2Reply_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp:2:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp: In member function ‘ncbi::objects::CComment_rule::TErrorList ncbi::objects::CComment_rule::IsValid(const ncbi::objects::CUser_object&) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule.cpp:290:28: warning: unused variable ‘sev’ [-Wunused-variable] CField_rule::TSeverity sev; ^~~ /usr/bin/make -w -j --jobserver-fds=3,4 -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ DATATOOL=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool MODULE_SEARCH=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/datatool -oR /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++ -opm /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump datatool: 2.16.0 make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.so .libblastxml2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastxml2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastxml2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastxml2.so /bin/ln -f .blastxml2.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/Comment_rule_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/valid___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.so .libgbseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgbseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbseq__.o gbseq___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgbseq.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libgbseq.so /bin/ln -f .gbseq.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' cd objects/biblio/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio TMPL=biblio -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /bin/rm -f libentrez2.so .libentrez2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2__.o entrez2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libentrez2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libentrez2.so /bin/ln -f .entrez2.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' cd objects/entrez2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2 TMPL=entrez2cli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/biblio/Affil_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/biblio/Affil.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/Affil.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.so .libvalid.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvalid.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC valid__.o valid___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lgeneral -lxser -lxregexp -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libvalid.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libvalid.so /bin/ln -f .valid.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.valid.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/Affil_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/entrez2/entrez2_client_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/entrez2/entrez2_client.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libentrez2cli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lentrez2 -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libentrez2cli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libentrez2cli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libentrez2cli.so /bin/ln -f .entrez2cli.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/citation_base.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.so .libbiblio.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libbiblio.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lgeneral -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libbiblio.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libbiblio.so /bin/ln -f .biblio.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' cd objects/medline/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null cd objects/medlars/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars TMPL=medlars -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline TMPL=medline -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/medline/DocRef_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/medline/DocRef.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/DocRef.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/medlars/Medlars_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/medlars/Medlars_entry.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/Medlars_entry.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/DocRef_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.so .libmedlars.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedlars.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medlars__.o medlars___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmedlars.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libmedlars.so /bin/ln -f .medlars.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.medlars.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline__.cpp -o medline__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.so .libmedline.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmedline.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC medline__.o medline___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmedline.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libmedline.so /bin/ln -f .medline.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' cd objects/pub/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null cd objects/pubmed/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed TMPL=pubmed -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub TMPL=pub -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/pubmed/Pubmed_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/pubmed/Pubmed_entry.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/Pubmed_entry.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/pub/Pub_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/pub/Pub.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/Pub.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/Pub_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.so .libpubmed.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpubmed.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pubmed__.o pubmed___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libpubmed.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libpubmed.so /bin/ln -f .pubmed.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.pubmed.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub__.cpp -o pub__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.so .libpub.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libpub.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC pub__.o pub___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedline -lbiblio -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libpub.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libpub.so /bin/ln -f .pub.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' cd objects/seq/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla TMPL=mla -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq TMPL=seq -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/mla/Error_val_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/mla/Error_val.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/Error_val.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_diag.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:2, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/Align_def.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/Error_val_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/EMBL_block_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/EMBL_block.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/EMBL_block.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/seqblock__.cpp:2, from seqblock__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1381:69: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:3:0, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, ^~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1385:62: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:42:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here NCBI_DEPRECATED void RemapToLoc(TDim row, ^~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign__.cpp:9:0, from seqalign__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1390:68: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Seq_align.cpp:1364:6: note: declared here void CSeq_align::RemapToLoc(TDim row, ^~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.so .libmla.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmla.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla__.o mla___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmla.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:10:0, from seqloc__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Seq_id.cpp: In static member function ‘static ncbi::SIZE_TYPE ncbi::objects::CSeq_id::ParseIDs(ncbi::objects::CBioseq_Base::TId&, const ncbi::CTempString&, ncbi::objects::CSeq_id::TParseFlags)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Seq_id.cpp:1859:60: warning: ‘static std::__cxx11::list& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Split(ss, "|", fasta_pieces, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2516:31: note: declared here static list& Split( ^~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30:0, from seqfeat__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::__cxx11::string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:72: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42:0, from seqfeat__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (idx > 0 && idx < ArraySize(sc_TrnaList)) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ cd objects/mla/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla TMPL=mlacli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/mla/mla_client_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/mla/mla_client.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client_.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libmlacli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mla_client.o mla_client_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lmla -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libmlacli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libmlacli.so /bin/ln -f .mlacli.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqres/Byte_graph_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqres/Byte_graph.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/Byte_graph.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/seqres__.cpp:2, from seqres__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqloc__.cpp -o seqloc__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqres__.cpp -o seqres__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-pIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqtable/BVector_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqtable/BVector_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/BVector_data.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/seqtable__.cpp:2, from seqtable__.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/Align_def_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ rotector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqtable__.cpp -o seqtable__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq___.cpp -o seq___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqalign___.cpp -o seqalign___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqloc___.cpp -o seqloc___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_data.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seqport_util.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seqport_util.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_handle.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqres___.cpp -o seqres___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include seqtable___.cpp -o seqtable___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_mapper.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_id_mapper.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_mapper_base.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_mapper_base.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( row_n == p_row ) { ~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seqlocinfo.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seqlocinfo.cpp:32: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/sofa_type.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/sofa_map.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_from_string.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_from_string.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseq.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqcode -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseq.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseq.so /bin/ln -f .seq.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' cd objects/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null cd objects/genomecoll/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null cd objects/seqset/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null cd objects/variation/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll TMPL=genome_collection -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb TMPL=blastdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation TMPL=variation -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset TMPL=seqset -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/variation/VariantPlacement_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/variation/VariantPlacement.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/VariantPlacement.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/variation__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_db_mask_info_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_db_mask_info.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/Blast_db_mask_info.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/Bioseq_set.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/VariantPlacement_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/variation___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.so .libblastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastdb__.o blastdb___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastdb.so /bin/ln -f .blastdb.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/variation__.cpp -o variation__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.so .libvariation.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libvariation.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC variation__.o variation___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libvariation.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libvariation.so /bin/ln -f .variation.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/taxon1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1 TMPL=taxon1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/gb_release_file.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/gb_release_file.cpp:32: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/Taxon1_data.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/taxon3/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3 TMPL=taxon3 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.so .libseqset.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqset.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqset.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqset.so /bin/ln -f .seqset.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' cd objects/scoremat/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat TMPL=scoremat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/BlockProperty_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/BlockProperty.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/BlockProperty.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libgenome_collection.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libgenome_collection.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libgenome_collection.so /bin/ln -f .genome_collection.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.genome_collection.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.so .libscoremat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libscoremat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC scoremat__.o scoremat___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libscoremat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libscoremat.so /bin/ln -f .scoremat.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/cache.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/utils.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/taxon3__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon3/cached_taxon3.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/cached_taxon3.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/seqedit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit TMPL=seqedit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqedit/SeqEdit_Cmd_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqedit/SeqEdit_Cmd.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/SeqEdit_Cmd.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon3/cached_taxon3.cpp -o cached_taxon3.o /bin/rm -f libtaxon3.so .libtaxon3.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon3.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon3__.o taxon3___.o taxon3.o cached_taxon3.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtaxon3.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libtaxon3.so /bin/ln -f .taxon3.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' cd objects/seqsplit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit TMPL=seqsplit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Bioseq_Ids.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/submit/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit TMPL=submit -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/submit/Contact_info_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/submit/Contact_info.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/Contact_info.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/submit__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/Contact_info_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/submit___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/cache.cpp -o cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/utils.cpp -o utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.so .libtaxon1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libtaxon1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libtaxon1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libtaxon1.so /bin/ln -f .taxon1.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.taxon1.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast TMPL=blast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.so .libseqedit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqedit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqedit__.o seqedit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqedit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqedit.so /bin/ln -f .seqedit.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqedit.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blas_get_searc_resul_reply_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blas_get_searc_resul_reply.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/Blas_get_searc_resul_reply.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blast__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blast___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.so .libsubmit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libsubmit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC submit__.o submit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lbiblio -lgeneral -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libsubmit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libsubmit.so /bin/ln -f .submit.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' cd objects/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1 TMPL=id1 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/id1/Entry_complexities_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/id1/Entry_complexities.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/Entry_complexities.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/id1__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/Entry_complexities_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/id1___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/NCBI_Blast4_module.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/names.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/names.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.so .libseqsplit.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqsplit.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqsplit.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqsplit.so /bin/ln -f .seqsplit.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' cd objmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr TMPL=objmgr -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.so .libid1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id1__.o id1___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libid1.so /bin/ln -f .id1.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.id1.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_setters.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_setters.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_info.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_annot_info.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_info.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blast__.cpp -o blast__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blast___.cpp -o blast___.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.so .libxnetblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast__.o blast___.o names.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxnetblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxnetblast.so /bin/ln -f .xnetblast.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' cd objtools/readers/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers TMPL=xobjread -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_table_info.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/table_field.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/read_util.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map_switch.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_switch.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/format_guess_ex.cpp:45: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/snp_annot_info.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/snp_annot_info.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_seq_entry.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:58:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, entries, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:74:74: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here void AgpRead(CNcbiIstream& is, ^~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:123:42: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", fields); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_read.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_types_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/table_field.cpp -o table_field.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu+In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_loc_cvt.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_cvt.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_validate_reaIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_validate_reader.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/aln_reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/aln_reader.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_selector.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/bed_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_descr_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/cigar.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/cigar.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/feat_ci.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/feat_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/graph_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/graph_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_aln_builder.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast TMPL=xnetblastcli -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp: In member function ‘virtual bool ncbi::objects::CFastaReader::ParseGapLine(const TStr&, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:1441:35: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_param.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/blastclient_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/blastclient.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient_.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient.cpp -o blastclient.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxnetblastcli.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastclient.o blastclient_.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxnetblastcli.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/featuredump.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/getfeature.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/getfeature.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_object_index.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object_index.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objects/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2 TMPL=id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stltypes.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialimpl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/id2___.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/id2/ID2S_Reply_Get_Chunk.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/ID2S_Reply_Get_Chunk.cpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/id2__.cpp:2: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ +11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -WformaIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/id2__.cpp -o id2__.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.so .libid2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC id2__.o id2___.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libid2.so /bin/ln -f .id2.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:48, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp: In function ‘Uint4 TestUtil::EndianIndependentBufferHash(const char*, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:257:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] Uint4 end_value = *((int *) & end_bytes); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual bool ncbi::objects::CGFFReader::x_ParseStructuredComment(const TStr&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:408:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "# \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CGFFReader::x_ParseFeatureInterval(const TStr&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:479:55: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, "\t", v, NStr::eNoMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:482:58: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t", v, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2685:26: note: declared here vector& Tokenize( const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp: In member function ‘virtual void ncbi::objects::CGFFReader::x_ParseV3Attributes(ncbi::objects::CGFFReader::SRecord&, const TStrVec&, ncbi::SIZE_TYPE&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:930:53: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v[i], ";", v2, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:938:45: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(values, ",", vals); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiutil.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff_reader.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o /bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_unit_test_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_unit_test_util.a /bin/ln -f .blast_unit_test_util.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_unit_test_util.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' der.cpp -o agp_validate_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/cigar.cpp -o cigar.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/neutral_seqalign.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/track_data.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o /bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqalign_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqalign_util.a /bin/ln -f .seqalign_util.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqalign_util.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blast_app_util -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info_object.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/microarray_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/phrap.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_base_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp: In member function ‘virtual bool ncbi::objects::CReaderBase::xIsTrackTerminator(const ncbi::CTempString&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:650:41: warning: ‘static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)’ is deprecated [-Wdeprecated-declarations] return (NStr::TruncateSpaces(strLine) == "###"); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2212:24: note: declared here static CTempString TruncateSpaces(const CTempString str, ^~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_app_util.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_app_util.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp: In function ‘ncbi::CRef ncbi::objects::{anonymous}::GetBestId(const TId&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:146:29: warning: large integer implicitly truncated to unsigned type [-Woverflow] Uint1 best_weight = UINT_MAX; ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp: In constructor ‘ncbi::objects::CFeature_table_reader_imp::CFeature_table_reader_imp(ncbi::ILineReader*, unsigned int, ncbi::objects::ILineErrorListener*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:438:18: warning: ‘ncbi::objects::CFeature_table_reader_imp::m_reader’ will be initialized after [-Wreorder] ILineReader* m_reader; ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:435:18: warning: ‘unsigned int ncbi::objects::CFeature_table_reader_imp::m_line_num’ [-Wreorder] unsigned int m_line_num; ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp:789:1: warning: when initialized here [-Wreorder] CFeature_table_reader_imp::CFeature_table_reader_imp(ILineReader* reader, unsigned int line_num, ILineErrorListener* pMessageListener) ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp: In member function ‘virtual bool ncbi::objects::CRepeatMaskerReader::ParseRecord(const string&, ncbi::objects::SRepeatRegion&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:893:43: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] if ( NStr::Split( line, " \t", values ).size() < MIN_VALUE_COUNT ) { ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ cd objtools/blast/services/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services TMPL=blast_services -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/blast_services.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_base_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_info.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/wiggle_reader.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.so .libblast_services.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblast_services.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_services.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblast_services.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblast_services.so /bin/ln -f .blast_services.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blast_services.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/gff3_sofa.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_sofa.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info.cpp -o tse_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/data_source.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_source.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gtf_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp: In static member function ‘static void ncbi::objects::CGff2Record::TokenizeGFF(std::vector&, const ncbi::CTempStringEx&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:221:68: warning: ‘static std::vector& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector&, ncbi::NStr::TSplitFlags, std::vector*, ncbi::CTempString_Storage*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(in_line, "\t", columns, NStr::fSplit_MergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2675:28: note: declared here vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gvf_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/priority.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/vcf_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_impl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/best_feat_finder.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/source_mod_parser.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/source_mod_parser.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta_exception.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_exception.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_seq_entry.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/agp_converter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp: In member function ‘void ncbi::CAgpConverter::LoadChromosomeMap(ncbi::CNcbiIstream&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:143:44: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(line, " \t", split_line); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbitime.hpp:62, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbi_system.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbifile.hpp:46, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/prefetch_actions.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_actions.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp: In member function ‘void ncbi::objects::CUCSCRegionReader::xSmartFieldSplit(std::vector >&, ncbi::CTempString)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:184:62: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(line, " \t.-:", fields, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -WdateIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/struct_cmt_reader.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_source.cpp -o data_source.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/priority.cpp -o priority.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope.cpp -o scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_impl.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/heap_scope.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.so .libxobjread.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjread.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC read_util.o format_guess_ex.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o aln_reader.o bed_reader.o cigar.o fasta.o fasta_aln_builder.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o message_listener.o line_error.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lcreaders -lxutil -lpub -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjread.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjread.so /bin/ln -f .xobjread.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjread.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_info.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_handle.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_map_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_ci.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_info.cpp -o scope_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopeIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_table_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_handle.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_handle.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_handle.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/tse_handle.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_annot_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_handle.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ nmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/align_ci.cpp -o align_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader.cpp -o data_loader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-securIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_types_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/align_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/align_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/handle_range_map.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range_map.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/object_manager.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector_ci.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_descr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_descr_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seqdesc_ci.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seqdesc_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ity -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range.cpp -o handle_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/object_manager.cpp -o object_manager.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_split_info.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_split_info.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_chunk_info.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_chunk_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_ci.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/SeqFeatData.hpp:93, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_type_index.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_type_index.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_loc_mapper.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_mapper.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_mapper.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_selector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/annot_collector.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader_factory.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader_factory.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/mapped_feat.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/mapped_feat.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_feat_handle.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_feat_handle.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp: In member function ‘bool ncbi::objects::CAnnot_Collector::x_SearchMapped(const ncbi::objects::CSeqMap_CI&, ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_id_Handle&, const ncbi::objects::CHandleRange&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_collector.cpp:3509:72: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if ( m_SearchSegments != numeric_limits::max() && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ x_MaxSearchSegmentsLimitIsReached() || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqres/Seq_graph_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqres/Seq_graph.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_graph_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_graph_handle.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_align_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_handle.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_assigner.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction_impl.cpp In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/scope_transaction.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edit_commands_impl.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_edit_commands.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_edit_commands.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_impl.hpp:49, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edit_saver.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/unsupp_editsaver.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -o scope_transaction_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /usr/bin/g++ -std=gnu++11 -c -WallIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_finder.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/edit_saver.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/unsupp_editsaver.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/edits_db_saver.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_saver.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/gc_assembly_parser.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/gc_assembly_parser.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bio_object_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info_object.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/tse_info.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split_parser.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/impl/seq_id_sort.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_id_sort.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null cd objmgr/util/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null cd algo/dustmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util TMPL=util -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/dustmask TMPL=xalgodustmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/dustmask/symdust.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/weight.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgodustmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC symdust.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgodustmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgodustmask.so /bin/ln -f .xalgodustmask.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgodustmask.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/sequence.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/segmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/segmask TMPL=xalgosegmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/segmask/segmask.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/segmask/segmask.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/segmask/segmask.cpp -o segmask.o /bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgosegmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC segmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgosegmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgosegmask.so /bin/ln -f .xalgosegmask.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' cd objmgr/split/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split TMPL=id2_split -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_blob.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp:50: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp: In function ‘ncbi::objects::feature::ELocationInFrame ncbi::objects::feature::IsLocationInFrame(const ncbi::objects::CSeq_feat_Handle&, const ncbi::objects::CSeq_loc&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:3357:89: warning: ‘ncbi::objects::sequence::ECompare ncbi::objects::sequence::Compare(const ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*)’ is deprecated [-Wdeprecated-declarations] sequence::ECompare cmp = sequence::Compare(cds.GetLocation(), loc, &(cds.GetScope())); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/feature.hpp:39:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp:84: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/seq_loc_util.hpp:200:20: note: declared here sequence::ECompare Compare(const CSeq_loc& loc1, ^~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqsplit/ID2S_Chunk_Id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/split_blob.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/blob_splitter_impl.hpp:47, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘std::__cxx11::string ncbi::s_SeqDB_TryPaths(const string&, const string&, char, bool, ncbi::CSeqDB_FileExistence&, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:356:79: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blast_paths, s_GetPathSplitter(), roads, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbireg.hpp:50, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/metareg.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/seqref.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/seqref.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/blob_id.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/blob_id.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seqtitle.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/MolInfo_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/MolInfo.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘const string* ncbi::s_CheckUniqueValues(const std::map, std::__cxx11::basic_string >&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2050:37: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(v, ":", items); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In member function ‘void ncbi::CSeqDB_IdRemapper::AddMapping(int, int, const string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2084:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp: In function ‘void ncbi::s_GetDetails(const string&, std::__cxx11::string&, std::__cxx11::string&, std::__cxx11::string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:2260:36: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(desc, ":", items); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbithr_conf.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimtx.hpp:62, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:51, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/n/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetFlags(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:804:45: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( clause, ";", kywds ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘bool x_EndsWithStrain(const ncbi::CTempString&, const ncbi::CTempString&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1068:80: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase (taxname, strain, 0, taxname.size() - 1, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘std::__cxx11::string s_RemoveBracketedOrgFromEnd(std::__cxx11::string, std::__cxx11::string)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1709:61: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:1787:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (offset > 0 && offset < m_MainTitle.length()) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::__cxx11::string&, ncbi::CTempString)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2400:68: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(title, taxname, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2401:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (pos == idx + 2) { ~~~~^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_AdjustProteinTitleSuffix(const ncbi::objects::CBioseq_Handle&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2471:83: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] pos = NStr::FindNoCase(m_MainTitle, "][", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/strsearch.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/create_defline.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::__cxx11::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp:2656:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/id_range.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/object_splitinfo.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/object_splitinfo.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/obj_sniff.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/obj_sniff.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_loc_util.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/asn_sizer.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/id_range.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/annot_piece.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/annot_piece.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:56, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/place_id.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/chunk_info.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/chunk_info.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2kIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_align_util.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/split/asn_sizer.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/size.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-2.6.0/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/size.cpp -o size.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o /bin/rm -f libid2_split.so .libid2_split.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libid2_split.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ gaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libid2_split.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libid2_split.so /bin/ln -f .id2_split.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.id2_split.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&, ncbi::CSeqDBLockHold&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:938:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] int found_short(-1); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:1804:81: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp:1732:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ AD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objmgr/util/objutil.cpp -o objutil.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjutil.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC weight.o sequence.o feature.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjmgr -lseqset -lseq -lpub -lbiblio -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjutil.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjutil.so /bin/ln -f .xobjutil.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/column_reader.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ast+-2.6.0/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.a /build/ncbi-blast+-rSgaEP/ncbi-blcd objtools/alnmgr/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr TMPL=alnmgr -w -j --jobserver-fds=3,4 all ast+-2.6.0/c++/BUILD/lib/libncbi_xreader.a /bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader.so /bin/ln -f .ncbi_xreader-static.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader-static.dep /bin/ln -f .ncbi_xreader.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_builders.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/cleanup/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup TMPL=cleanup -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /bin/rm -f libseqdb.so .libseqdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqdb.so /bin/ln -f .seqdb.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/seqmasks_io/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_converters.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/dbindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::s_TitleEndsInOrganism(const string&, const string&, ncbi::SIZE_TYPE*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:2006:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::FindNoCase(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence)’ is deprecated [-Wdeprecated-declarations] answer = NStr::FindNoCase(sTitle, sPattern, 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2082:22: note: declared here static SIZE_TYPE FindNoCase(const CTempString str, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp: In function ‘void ncbi::objects::s_RemoveOrgFromEndOfProtein(ncbi::objects::CBioseq&, std::__cxx11::string)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:2060:73: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] SIZE_TYPE cp = NStr::Find(str, "[", 0, NPOS, NStr::eLast); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:5501:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp: In function ‘void ncbi::InitSplicedsegFromPairwiseAln(ncbi::objects::CSpliced_seg&, const ncbi::CPairwiseAln&, ncbi::objects::CScope*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp:538:44: warning: typedef ‘TAlnRngColl’ locally defined but not used [-Wunused-local-typedefs] typedef CAlignRangeCollection TAlnRngColl; ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] unsigned long tmp; ^~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_int.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_seqid.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/nIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::__cxx11::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:53: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string idstr = objects::sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_util_macros.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/biblio/biblio_macros.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/misc/sequence_macros.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:41: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libseqmasks_io.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libseqmasks_io.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libseqmasks_io.so /bin/ln -f .seqmasks_io.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.seqmasks_io.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/dbindex.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_search.cpp:47: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_SeqFeatTRNABC(ncbi::objects::CSeq_feat&, ncbi::objects::CTrna_ext&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:5893:19: warning: unused variable ‘comment’ [-Wunused-variable] const string &comment = ( FIELD_IS_SET(feat, Comment) ? GET_FIELD(feat, Comment) : kEmptyStr ); ^~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::__cxx11::string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:7004:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { ~~~~~~~~~~^~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp:7018:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if( first_pos > last_pos ) { ~~~~~~~~~~^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp:1467:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (TNumrow row = 0; row < selected_rows.size(); row++) { ~~~~^~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /usIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /usr/bin/g++ -std=gnu++11 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgoblastdbindex.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgoblastdbindex.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgoblastdbindex.so /bin/ln -f .xalgoblastdbindex.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] match1->m_ChainScore == match2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ match1->m_Score > match2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] (aln_seq1->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand1 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore > 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 == eNa_strand_minus || ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] aln_seq2->m_StrandScore < 0 && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ strand2 != eNa_strand_minus)) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_cache.a /bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_cache.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_cache.o writer_cache.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_cache.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_cache.so /bin/ln -f .ncbi_xreader_cache-static.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_cache-static.dep /bin/ln -f .ncbi_xreader_cache.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:140:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (start_its_i->second->first != -1) { ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:1232:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (m_AlnMixMatches->m_ContainsNA && m_AlnMixMatches->m_ContainsAA || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_Merge()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp:151:17: warning: ‘width2’ may be used uninitialized in this function [-Wmaybe-uninitialized] int width1, width2; ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id1.a /bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id1.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id1.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id1.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id1.so /bin/ln -f .ncbi_xreader_id1-static.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id1-static.dep /bin/ln -f .ncbi_xreader_id1.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id1.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmix.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp: At global scope: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config /* = CSeqFormatterConfig() */) ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id2.a /bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xreader_id2.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC reader_id2.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xreader_id2.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xreader_id2.so /bin/ln -f .ncbi_xreader_id2-static.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id2-static.dep /bin/ln -f .ncbi_xreader_id2.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xreader_id2.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmerger.hpp:42:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnseq.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (plus && prev_start_plus_len < start || ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /bin/rm -f libxcleanup.so .libxcleanup.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxcleanup.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o newcleanupp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjutil -lvalid -lsubmit -ltaxon3 -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxcleanup.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxcleanup.so /bin/ln -f .xcleanup.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xcleanup.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:37:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp: In member function ‘bool ncbi::objects::CAlnMixSegment::SSeqComp::operator()(const ncbi::objects::CAlnMixSeq*, const ncbi::objects::CAlnMixSeq*) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnsegments.hpp:102:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_SeqIdx == seq2->m_SeqIdx && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_ChildIdx < seq2->m_ChildIdx; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp: In static member function ‘static bool ncbi::objects::CAlnMixSequences::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp:84:51: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] seq1->m_ChainScore == seq2->m_ChainScore && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ seq1->m_Score > seq2->m_Score || ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ r/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_blastdb.so /bin/ln -f .ncbi_xloader_blastdb.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o mkindex_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o makembindex /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makembindex /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/makembindex make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastdb_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastdb_format.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastdb_format.so /bin/ln -f .blastdb_format.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blastdb_format.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp: In function ‘void s_TestPartialAmbigRange(ncbi::CSeqDB&, int, int, int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:79:18: warning: variable ‘wholeL’ set but not used [-Wunused-but-set-variable] int wholeL(0); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gene_info_reader_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o gene_info_reader /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gene_info_reader /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/gene_info_reader make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (left_seg < 0 || seg > right_seg && right_seg > 0) { ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_demo.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_demo /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_demo /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_demo make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_inst.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/aln_seqid.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/pairwise_aln.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/pairwise_aln.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In constructor ‘ncbi::CWriteDB_File::CWriteDB_File(const string&, const string&, int, Uint8, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:115:24: warning: unused variable ‘MAX_FILE_SIZE’ [-Wunused-variable] static const Uint8 MAX_FILE_SIZE = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp: In member function ‘int ncbi::CWriteDB_File::Write(const ncbi::CTempString&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:147:24: warning: unused variable ‘MAX_OFFSET’ [-Wunused-variable] static const Uint8 MAX_OFFSET = (1L << MAX_OFFSET_BITS) - 1L; ^~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_perf.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o seqdb_perf /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_perf /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_perf make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/general__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alntext.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Align_def.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/writedb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ .6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/score_builder_base.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_filter_program_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_filter_program.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_services_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_services_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_services_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' cd algo/winmask/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask TMPL=xalgowinmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqdb_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o seqdb_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqdb_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seqdb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j --jobserver-fds=3,4 all SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalnmgr.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalnmgr.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalnmgr.so /bin/ln -f .xalnmgr.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xalnmgr.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_score.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Giimport_id.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/seqloc__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbload_util.o /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.a /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_genbank.a /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_genbank.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC gbloader.o gbload_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lxconnect -lconnect -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_genbank.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_genbank.so /bin/ln -f .ncbi_xloader_genbank-static.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_genbank-static.dep /bin/ln -f .ncbi_xloader_genbank.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' cd objtools/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format TMPL=xformat -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/accession_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbiIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/basecount_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /bin/rm -f libwritedb.so .libwritedb.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libwritedb.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libwritedb.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libwritedb.so /bin/ln -f .writedb.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' cd objtools/simple/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/simple TMPL=xobjsimple -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/Seq_feat.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/comment_item.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/simple/simple_om.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/dustmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker TMPL=dustmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/main.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxobjsimple.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC simple_om.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxobjsimple.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxobjsimple.so /bin/ln -f .xobjsimple.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp: At global scope: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:128:43: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:130:54: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter& operator=(const CSeqFormatter& rhs); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestNoFormatSpecifier::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:55:41: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_Empty::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:119:57: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] #define NcbiEmptyString NCBI_NS_NCBI::CNcbiEmptyString::Get() ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:120:19: note: in expansion of macro ‘NcbiEmptyString’ #define kEmptyStr NcbiEmptyString ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:62:41: note: in expansion of macro ‘kEmptyStr’ BOOST_REQUIRE_THROW(CSeqFormatter f(kEmptyStr, db, std::cout), ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestInvalidFormatSpecifiers_InvalidAlgoId::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:69:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:71:40: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] BOOST_REQUIRE_THROW(CSeqFormatter f("%m", db, std::cout, config), ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:101:9: note: in definition of macro ‘BOOST_CHECK_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestValidFormatSpecifiers::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:78:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:94:24: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(*itr, db, std::cout, config); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:98:20: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f("%m", db, std::cout, config); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiOidLength::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:109:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqId::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:151:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSeqIdLong::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:195:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestAccessionPIGTaxidTitle::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:228:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestGiGivenPIG::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:259:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestRequestSequenceDataLength::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:284:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedFasta::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:314:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:319:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out, config); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function ‘void seq_writer::TestMaskedSequenceData::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:358:25: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] CSeqFormatterConfig config; ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here struct NCBI_DEPRECATED CSeqFormatterConfig { ^~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:361:21: warning: ‘CSeqFormatter’ is deprecated [-Wdeprecated-declarations] CSeqFormatter f(format_spec, db, out, config); ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter ^~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Delta_ext_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Delta_ext.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/contig_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o dust_mask_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o dustmasker /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f dustmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/date_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blasIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/dbsource_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -ldl -lm -lpthread -o blastdb_format_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdb_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdb_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blastdb/Blast_def_line.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp:59, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/accession_item.cpp -o accession_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/comment_item.cpp -o comment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/contig_item.cpp -o contig_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/date_item.cpp -o date_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/defline_item.In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/defline_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd objtools/align_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format TMPL=align_format -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:45: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/align_format_util.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_SplitCommaSeparatedStringInParens(std::vector >&, const string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:874:120: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize( string_to_split.substr( 1, string_to_split.length() - amount_to_chop_off_end - 1), ",", output_vec ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:1393:49: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( raw_exception, ",", exceptions ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:1790:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In function ‘void ncbi::objects::s_ParseParentQual(const ncbi::objects::CGb_qual&, std::__cxx11::list >&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:3355:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(val, "(,)", vals); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddRptUnitQual(const string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:3787:39: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(tmp, ",", units); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp:44: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ t+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/buIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp: In constructor ‘ncbi::CSeqMaskerIstatOAscii::CSeqMaskerIstatOAscii(const string&, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4, Uint4)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:113:49: warning: ‘unit_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] if( k == 0U || k > (Uint4)(2*unit_size - 1) ) ~^~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o writedb_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f writedb_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/writedb_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_item.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showdefline.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ctrl_items.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/align_format/align_format_util.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/PIR_block_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/PIR_block.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_dup_table.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp: In member function ‘void ncbi::objects::CKeywordsItem::x_AddKeyword(const string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:378:38: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split( keyword, ";", kywds ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::__cxx11::string&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:4433:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp:4433:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/tabular.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Date.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/locus_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ild/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEPIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:213:63: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp:214:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (this_start < (15 + last_stop) ) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/align_format/vectorscreen.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:130:45: warning: ‘std::__cxx11::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] string id_str = sequence::GetTitle( bsh ); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp:37:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:288:8: note: declared here string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp: In static member function ‘static void ncbi::objects::CReferenceItem::ChangeMedlineAuthorsToISO(ncbi::CRef)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:1300:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(author_name, " ", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/win_mask_config.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/align_format/seqalignfilter.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/seqalignfilter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(type == eAny || type >= eGenerateMasksWithDuster) ^~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ arg_desc.AddDefaultKey( "dust_level", "dust_level", ^~~~~~~~ cpp -o defline_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/feature_item.cpp -o feature_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_item.cpp -o genome_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/locus_item.cpp -o locus_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/primary_item.cpp -o primary_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/reference_item.cpp -o reference_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/taxon1/taxon1.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/taxFormat.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/segment_item.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/aln_printer.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/sequence_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat.cpp:32: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/GB_block_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqblock/GB_block.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp:257:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( genome >= s_organelle_prefix_size ) { ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/version_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxalgowinmask.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxalgowinmask.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxalgowinmask.so /bin/ln -f .xalgowinmask.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' cd algo/blast/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api TMPL=xblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/winmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker TMPL=winmasker -w -j --jobserver-fds=3,4 all D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libalign_format.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalnmgr -lncbi_xloader_genbank -lseqdb -lblast_services -lxobjread -lxobjutil -lxobjmgr -lxnetblast -lblastdb -lgene_info -ltaxon1 -lseqset -lseq -lgeneral -lxser -lxcgi -lxhtml -ltables -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libalign_format.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libalign_format.so /bin/ln -f .align_format.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' cd objtools/align_format/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/wgs_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_app.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/tsa_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/dustmask/symdust.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Int_fuzz_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Int_fuzz.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_seqloc.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/main.cpp -o main.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o windowmasker /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f windowmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/windowmasker make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ enmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/segment_item.cpp -o segment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/source_item.cpp -o source_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/version_item.cpp -o version_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Dbtag.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/qualifiers.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:379:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp:388:9: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return true; ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/context.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_gather.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp: In member function ‘void ncbi::objects::CFlatGatherer::x_IdComments(ncbi::objects::CBioseqContext&, ncbi::objects::CFlatGatherer::EGenomeAnnotComment) const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:1018:34: warning: unused variable ‘format’ [-Wunused-variable] CCommentItem::ECommentFormat format = ctx.Config().DoHTML() ? ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp: At global scope: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp:748:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) ^~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/Object_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_gather.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buiIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Seq_entry.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/biblio/Cit_book_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/biblio/Cit_book.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/item_formatter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:99:36: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:105:37: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp: In member function ‘void ncbi::objects::CFlatFileGenerator::Generate(const ncbi::objects::CSeq_entry_Handle&, ncbi::objects::CFlatItemOStream&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:185:10: warning: unused variable ‘nearFeatsSuppress’ [-Wunused-variable] bool nearFeatsSuppress = false; ^~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:188:10: warning: variable ‘isNgNtNwNz’ set but not used [-Wunused-but-set-variable] bool isNgNtNwNz = false; ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:189:10: warning: variable ‘isGED’ set but not used [-Wunused-but-set-variable] bool isGED = false; ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp:190:10: warning: variable ‘isTPA’ set but not used [-Wunused-but-set-variable] bool isTPA = false; ^~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/context.cpp -o context.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_items.cpp -o gather_items.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_formatter.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath,/usr/lib/ncbiIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ -blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o align_format_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f align_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/align_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/format_item_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/format_item_ostream.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/item_ostream.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/ostream_text_ostream.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ostream_text_ostream.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:38:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGapItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::COriginItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CContigItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CPrimaryItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CTSAItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CWGSItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDBSourceItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSequenceItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CBaseCountItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatureItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceFeatureItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CFeatHeaderItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CCommentItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CReferenceItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSourceItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CSegmentItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CKeywordsItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CHtmlAnchorItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CGenomeProjectItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CVersionItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CAccessionItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CDeflineItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CLocusItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp: In instantiation of ‘ncbi::objects::{anonymous}::CWrapperForFlatTextOStream::~CWrapperForFlatTextOStream() [with TFlatItemClass = ncbi::objects::CEndSectionItem]’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:2342:1: required from here /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: warning: throw will always call terminate() [-Wterminate] throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:530:25: note: in C++11 destructors default to noexcept throw (exception_var) ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiexpt.hpp:549:9: note: in expansion of macro ‘NCBI_EXCEPTION_THROW’ NCBI_EXCEPTION_THROW(NCBI_EXCEPTION(exception_class, err_code, \ ^~~~~~~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp:120:17: note: in expansion of macro ‘NCBI_THROW’ NCBI_THROW(CFlatException, eHaltRequested, ^~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seqdesc.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/origin_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/item_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_gather.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ FSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/origin_item.cpp -o origin_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -WdatIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_formatter.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostr.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In function ‘void ncbi::objects::s_GBSeqStringCleanup(std::__cxx11::string&, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:82:36: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(str, " \n\r\t\b", l); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘virtual void ncbi::objects::CGBSeqFormatter::FormatGenomeProject(const ncbi::objects::CGenomeProjectItem&, ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:358:37: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split(second, ",", ids); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp: In member function ‘void ncbi::objects::CGBSeqFormatter::x_StrOStreamToTextOStream(ncbi::objects::IFlatTextOStream&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:685:70: warning: ‘static std::__cxx11::list >& ncbi::NStr::Split(ncbi::CTempString, ncbi::CTempString, std::__cxx11::list >&)’ is deprecated [-Wdeprecated-declarations] NStr::Split((string)CNcbiOstrstreamToString(m_StrStream), "\n", l); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2484:26: note: declared here static list& Split(const CTempString str, ^~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/text_ostream.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/alignment_item.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/accession_item.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp: In function ‘ncbi::objects::CFlatFileConfig::TGenbankBlocks ncbi::objects::{anonymous}::x_GetGenbankBlocks(const ncbi::CArgs&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:841:52: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(blocks_arg, ",", vecOfBlockNames); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/flat_file_config.hpp:34, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blastx_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blastx_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/gap_item.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gap_item.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_project_item.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ e-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gap_item.cpp -o gap_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/alnmgr/alnmap.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/cigar_formatter.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/sam_formatter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/cigar_formatter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ ld/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/tblastx_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqset/Bioseq_set.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_set_handle.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_entry_ci.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/gather_iter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_iter.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/tblastn_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/item_base.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/html_anchor_item.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/gene_finder.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gene_finder.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/OrgMod_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqfeat/OrgMod.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/items/flat_qual_slots.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_qual_slots.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_blast.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.READ_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.so .libxformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_maIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_blast.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ p.o gene_finder.o flat_qual_slots.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxformat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxformat.so /bin/ln -f .xformat.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xformat.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /usr/bin/g++ -std=gnu++11 -c -WalIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bl2seq.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/seq_vector.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psibl2seq.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psibl2seq.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ l -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/pIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (k < m_Msa->dimensions->query_length && ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ siblast.cpp -o psiblast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/search_strategy.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rps_aux.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/setup_factory.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ 0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/version.cpp -o version.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/traceback_stage.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/uniform_search.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/Pssm_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/Pssm.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_search.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_results.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Dense_diag.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/seqalign__.hpp:1, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_search.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/query_data.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/local_search.cpp -o local_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/query_data.cpp -o query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_dbindex.cpp:43: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_cxx.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ T -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=formaIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_blk.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/subj_ranges_set.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpsblast_local.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp: In member function ‘void ncbi::blast::CSeedTop::x_ParsePattern()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:66:56: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::TSplitFlags, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(NStr::ToUpper(m_Pattern), "-", units); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2658:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/deltablast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast_options.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ t-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/psiblast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/magicblast_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast_options.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/general/User_object.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /bin/rm -f libxblast.so .libxblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgowinmask -lxalgodustmask -lseqmasks_io -lseqdb -lxobjread -lvariation -lcreaders -lsubmit -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -lxconnect -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxblast.so /bin/ln -f .xblast.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' cd algo/blast/blastinput/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/igblast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format TMPL=xblastformat -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput TMPL=blastinput -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast TMPL=igblast -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_results.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp: In constructor ‘ncbi::blast::CIgAnnotationInfo::CIgAnnotationInfo(ncbi::CConstRef&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:92:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:116:65: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*l, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/igblast/igblast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_ScreenByAlignLength(ncbi::CRef&, int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp:138:73: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if((*it)->GetAlignLength() - (*it)->GetTotalGapCount(0) < length){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aalookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aalookup_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f aalookup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/aalookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:501:86: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::__cxx11::string&, std::__cxx11::string&, bool, bool)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:785:89: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/tempstr.hpp:39:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/object_manager.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objostrxml.hpp:66:26: note: declared here NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbimisc.hpp:1216:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED ^~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.so .libigblast.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libigblast.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC igblast.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libigblast.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libigblast.so /bin/ln -f .igblast.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.igblast.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml2_format.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_args.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdiag_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastdiag_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdiag_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdiag_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie aascan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o aascan_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f aascan_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function ‘void blastengine::testBlastpPrelimSearch::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:441:33: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:49:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:51:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp: In member function ‘void ncbi::CBlastFormat::x_SplitSeqAlign(ncbi::CConstRef, ncbi::objects::CSeq_align_set&, ncbi::objects::CSeq_align_set&, ncbi::blast::CPsiBlastIterationState::TSeqIds&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp:520:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(count >= m_NumSummary) ~~~~~~^~~~~~~~~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastengine_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastengine_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastengine_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastengine_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastextend_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastextend_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastextend_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRAIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:37:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:155:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/build_archive.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:36:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::__cxx11::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:140:40: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/data4xml2format.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/data4xml2format.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Icd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/simple/simple_om.hpp:35, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/blast_format.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/format/sam_formatter.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/format/sam.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/sam.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blasthits_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blasthits_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blasthits_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blasthits_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ NT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/format/sam.cpp -o sam.o /bin/rm -f libxblastformat.so .libxblastformat.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libxblastformat.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxformat -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libxblastformat.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libxblastformat.so /bin/ln -f .xblastformat.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35:0: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::RemoteOptionsTest::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:71:60: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ ^ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:145:9: note: in definition of macro ‘BOOST_CHECK_NO_THROW_IMPL’ S; \ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testRemoteFilterString::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1327:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1331:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1336:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1342:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1348:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1354:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:38: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:175:26: note: declared here NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); ^~~~~~~~~~~~~~~ In file included from /usr/include/boost/test/test_tools.hpp:45:0, from /usr/include/boost/test/unit_test.hpp:18, from /usr/include/boost/test/auto_unit_test.hpp:16, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/test_boost.hpp:66, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function ‘void blastoptions::testOptionsDeepCopy::test_method()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1395:57: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:173:27: note: declared here NCBI_DEPRECATED char* GetFilterString() const; ^~~~~~~~~~~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastfilter_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastfilter_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastfilter_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastfilter_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gapinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxncbi -ldl -lm -lpthread -o gapinfo_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gapinfo_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastoptions_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastoptions_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastoptions_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastoptions_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_besthit_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspfilter_besthit_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/hspfilter_besthit_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o gencode_singleton_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f gencode_singleton_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspfilter_culling_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspfilter_culling_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/hspfilter_culling_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastsetup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastsetup_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastsetup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITSIn file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o hspstream_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f hspstream_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/hspstream_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o msa2pssm_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f msa2pssm_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/msa2pssm_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie linkhsp_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o linkhsp_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f linkhsp_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntlookup_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntlookup_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f ntlookup_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie ntscan_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o ntscan_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f ntscan_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/ntscan_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp: In constructor ‘ncbi::blast::CKBlastpAppArgs::CKBlastpAppArgs()’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp:50:16: warning: unused variable ‘kFilterByDefault’ [-Wunused-variable] bool const kFilterByDefault = false; ^~~~~~~~~~~~~~~~ =64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protemake[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie phiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o phiblast_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f phiblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie optionshandle_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o optionshandle_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f optionshandle_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/optionshandle_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o prelimsearch_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f prelimsearch_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/prelimsearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j --jobserver-fds=3,4 all ctor-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.so .libblastinput.so.stamp /usr/bin/g++ -std=gnu++11 -shared -o libblastinput.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lcreaders -lsubmit -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -ldl -lm -lpthread /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib /bin/ln -f libblastinput.so /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib/libblastinput.so /bin/ln -f .blastinput.dep /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/status/.blastinput.dep make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_iteration_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast_iteration_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast_iteration_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psibl2seq_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psibl2seq_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/psibl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmenginefreqratios_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f pssmenginefreqratios_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie querydata_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o querydata_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f querydata_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/querydata_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_interval.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/services/blast_services.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie queryinfo_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o queryinfo_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f queryinfo_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/queryinfo_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o pssmcreate_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f pssmcreate_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/pssmcreate_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Std_seg.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/util/sequence.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../core /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie redoalignment_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o redoalignment_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f redoalignment_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/redoalignment_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/remote_blast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/search_strategy.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rps_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o rps_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rps_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie scoreblk_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o scoreblk_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f scoreblk_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/scoreblk_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie remote_blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o remote_blast_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f remote_blast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie search_strategy_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o search_strategy_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f search_strategy_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/search_strategy_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqinfosrc_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqinfosrc_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie stat_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o stat_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f stat_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/stat_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie setupfactory_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o setupfactory_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f setupfactory_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/setupfactory_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j --jobserver-fds=3,4 all cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seqsrc_seqdb.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/subj_ranges_set.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o seqsrc_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seqsrc_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seqsrc_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o subj_ranges_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f subj_ranges_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/subj_ranges_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/traceback_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/uniform_search.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie split_query_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o split_query_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f split_query_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/split_query_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie traceback_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o traceback_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f traceback_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie version_reference_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o version_reference_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f version_reference_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/version_reference_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o tracebacksearch_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tracebacksearch_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/tracebacksearch_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie uniform_search_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o uniform_search_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f uniform_search_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/uniform_search_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blast_formatter -w -j --jobserver-fds=3,4 all cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blast_formatter.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastn_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I../ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bdbloader_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bdbloader_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f bdbloader_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/bdbloader_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastn /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastp -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_formatter.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blast_formatter /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_formatter /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_formatter make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=blastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastp_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastx_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=deltablast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/deltablast.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/deltablast_app.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o blast_format_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_format_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_format_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=psiblast -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastp_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastp /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastp /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastp make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=rpsblast -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/blast/Blast4_value.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_options.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/psiblast_app.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastx /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastx /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastx make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=rpstblastn -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/rpsblast_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/rpstblastn_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie deltablast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o deltablast /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f deltablast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/deltablast make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=seedtop -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/seedtop.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/seedtop_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpsblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o rpsblast /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rpsblast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/rpsblast make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=tblastn -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o psiblast /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blast/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast TMPL=tblastx -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/tblastn_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie rpstblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o rpstblastn /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f rpstblastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_aux.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/query_data.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/local_blast.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/tblastx_app.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdb_aliastool.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie seedtop_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o seedtop /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f seedtop /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/seedtop make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcheck -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:39: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastn_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o tblastn /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tblastn /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcmd -w -j --jobserver-fds=3,4 all /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘int CAliasTest::DoTest(const string&, TSeen&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:720:72: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(*line, " \t\n\r", tokens, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual bool CDbTest::Test(CTestActionList&)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:941:54: warning: ‘static std::vector >& ncbi::NStr::Tokenize(ncbi::CTempString, ncbi::CTempString, std::vector >&, ncbi::NStr::EMergeDelims, std::vector*)’ is deprecated [-Wdeprecated-declarations] NStr::Tokenize(m_Db, " ", dbs, NStr::eMergeDelims); ^ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistd.hpp:37:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbicntr.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiobj.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiargs.hpp:84, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbiapp.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/corelib/ncbistr.hpp:2666:28: note: declared here static vector& Tokenize(const CTempString str, ^~~~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdb_aliastool.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdb_aliastool /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdb_aliastool /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=blastdbcp -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie tblastx_app.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o tblastx /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f tblastx /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=convert2blastmask -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcmd.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcp.cpp:33: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Bioseq.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/readers/fasta.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/convert2blastmask.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcheck.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcheck /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcheck /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=makeblastdb -w -j --jobserver-fds=3,4 all make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcp.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcp /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcp /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcp make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie convert2blastmask.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o convert2blastmask /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f convert2blastmask /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/convert2blastmask make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/blastdb/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb TMPL=makeprofiledb -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/blast/seqdb_writer/build_db.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.hpp:33, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.cpp:31: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_id.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/seq_id_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/scope.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeblastdb.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistrasn.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeprofiledb.cpp:40: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastdbcmd.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o blastdbcmd /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastdbcmd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastdbcmd make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd app/segmasker/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/segmasker TMPL=segmasker -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Seq_loc.hpp:44, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/segmasker/segmasker.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie segmasker.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -ldl -lm -lpthread -o segmasker /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f segmasker /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/segmasker make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j --jobserver-fds=3,4 all /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqalign/Seq_align_set.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/blast_types.hpp:38, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/api/bl2seq.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seqloc/Na_strand.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/bioseq_handle.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeprofiledb.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o makeprofiledb /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makeprofiledb /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/makeprofiledb make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -ldl -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -ldl -lm -lpthread -o makeblastdb /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f makeblastdb /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/makeblastdb make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot_.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objects/seq/Seq_annot.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/annot_type_selector.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objmgr/data_loader.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/algo/blast/blastinput/blast_scope_src.hpp:43, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:37: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blast_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:38: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objhook.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objistr.hpp:42, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:36: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie delta_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o delta_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f delta_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j --jobserver-fds=3,4 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j --jobserver-fds=3,4 all In file included from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bm.h:68:0, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/ncbi_bitset.hpp:53, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/serialbase.hpp:45, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/stdtypes.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/objectinfo.hpp:40, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/impl/objecttype.hpp:36, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/serial/iterator.hpp:37, from /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h: In function ‘unsigned int bm::gap_test(const T*, unsigned int)’: /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:521:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include/util/bitset/bmfunc.h:530:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘else’ return ((*buf) & 1) ^ ((--start) & 1); ^~~~~~ make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie magicblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -lm -lpthread -o magicblast_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f magicblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/magicblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/../../api /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie psiblast_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o psiblast_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f psiblast_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/psiblast_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie bl2seq_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o bl2seq_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f bl2seq_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o /usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/inc -I/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/include /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o /usr/bin/g++ -std=gnu++11 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -L/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lsubmit -lmlacli -lmla -lmedlars -lpubmed -lvalid -ltaxon3 -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lblast -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lcreaders -lsubmit -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lgnutls -lp11-kit -lgmp -lhogweed -lgmp -lnettle -ltasn1 -lidn -lp11-kit -lz -lz -lnsl -lz -lbz2 -ldl -ldl -lm -lpthread -o blastinput_unit_test /bin/bash /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin /bin/ln -f blastinput_unit_test /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/bin/blastinput_unit_test make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' dh_auto_test /usr/bin/make -j1 check VERBOSE=1 make[2]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++' if test -s ""; then \ cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -w check_p RUN_CHECK=Y; \ else \ cd /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build && /usr/bin/make -w check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' ====================================================================== make[4]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' /usr/bin/make -C corelib -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/corelib' /usr/bin/make -C util -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make -C regexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/regexp TMPL=regexp -w mark-as-disabled make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/regexp' /usr/bin/make -C xregexp -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/xregexp' /usr/bin/make -C compress -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress' /usr/bin/make -C bzip2 -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/bzip2 TMPL=bzip2 -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/bzip2' /usr/bin/make -C zlib -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/util/compress/zlib TMPL=zlib -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/zlib' /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/compress' /bin/echo 'Warning: non-existent sub-project "diff"' Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" /usr/bin/make -C tables -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/tables' /usr/bin/make -C creaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/creaders' /usr/bin/make -C sequtil -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/sequtil' /usr/bin/make -C bitset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/util' /usr/bin/make -C connect -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -C services -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect/services' /bin/echo 'Warning: non-existent sub-project "ext"' Warning: non-existent sub-project "ext" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/connect' /usr/bin/make -C cgi -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/cgi' /usr/bin/make -C html -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/html' /usr/bin/make -C build-system -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system' /usr/bin/make -C helpers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/helpers' /usr/bin/make -C project_tree_builder -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder /usr/bin/make -C msbuild -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w mark-as-disabled make[9]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/build-system' /usr/bin/make -C serial -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /usr/bin/make -C datatool -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial/datatool' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/serial' /bin/echo 'Warning: non-existent sub-project "db"' Warning: non-existent sub-project "db" /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" /usr/bin/make -C objects -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects' /usr/bin/make -C general -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/general' /usr/bin/make -C biblio -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biblio' /usr/bin/make -C medline -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medline' /usr/bin/make -C pub -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pub' /usr/bin/make -C seqcode -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqcode' /usr/bin/make -C seq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seq' /usr/bin/make -C seqset -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqset' /usr/bin/make -C submit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/submit' /usr/bin/make -C seqedit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqedit' /usr/bin/make -C seqsplit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqsplit' /usr/bin/make -C id1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id1' /usr/bin/make -C id2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/id2' /usr/bin/make -C entrez2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrez2' /usr/bin/make -C pubmed -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pubmed' /usr/bin/make -C medlars -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/medlars' /usr/bin/make -C mla -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mla' /usr/bin/make -C proj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/proj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/proj' /usr/bin/make -C scoremat -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/scoremat' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blast' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastdb' /usr/bin/make -C blastxml -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml' /usr/bin/make -C blastxml2 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/blastxml2' /usr/bin/make -C mmdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mmdb' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mmdb' /usr/bin/make -C cn3d -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cn3d' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cn3d' /usr/bin/make -C cdd -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cdd' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/cdd' /usr/bin/make -C ncbimime -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/ncbimime' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/ncbimime' /usr/bin/make -C pcsubstance -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcsubstance' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcsubstance' /usr/bin/make -C pcassay -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcassay' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/pcassay' /usr/bin/make -C gbseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbseq' /usr/bin/make -C insdseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/insdseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/insdseq' /usr/bin/make -C tinyseq -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/tinyseq' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/tinyseq' /usr/bin/make -C biotree -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biotree' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/biotree' /usr/bin/make -C entrezgene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrezgene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/entrezgene' /usr/bin/make -C omssa -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/omssa' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/omssa' /usr/bin/make -C remap -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/remap' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/remap' /usr/bin/make -C seqtest -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqtest' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/seqtest' /usr/bin/make -C taxon1 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon1' /usr/bin/make -C taxon3 -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/taxon3' /usr/bin/make -C gbproj -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbproj' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/gbproj' /usr/bin/make -C trackmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/trackmgr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/trackmgr' /usr/bin/make -C valerr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valerr' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valerr' /usr/bin/make -C valid -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/valid' /usr/bin/make -C access -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/access' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/access' /usr/bin/make -C docsum -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/docsum' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/docsum' /usr/bin/make -C featdef -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/featdef' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/featdef' /usr/bin/make -C genomecoll -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genomecoll' /usr/bin/make -C homologene -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/homologene' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/homologene' /usr/bin/make -C mim -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mim' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/mim' /usr/bin/make -C objprt -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/objprt' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/objprt' /usr/bin/make -C variation -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/variation' /usr/bin/make -C macro -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/macro' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/macro' /usr/bin/make -C genesbyloc -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genesbyloc' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/genesbyloc' /usr/bin/make -C coords -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/coords' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/coords' /usr/bin/make -C varrep -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/varrep' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects/varrep' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objects' /usr/bin/make -C objmgr -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /usr/bin/make -C util -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/util' /usr/bin/make -C split -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objmgr' /usr/bin/make -C objtools -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" /usr/bin/make -C readers -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/readers' /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/demo' /usr/bin/make -C test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make -C seqdb_writer -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/make -C gene_info_reader -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/make -C demo -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/demo' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" /usr/bin/make -C services -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/services' /usr/bin/make -C blastdb_format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/blastdb_format' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C data_loaders -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C genbank -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /usr/bin/make -C cache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" /usr/bin/make -C id2 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id2' /usr/bin/make -C id1 -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" /usr/bin/make -C gicache -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' NOTE: Skipping project gicache due to unmet requirements: LMDB make[9]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /usr/bin/make -f /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w mark-as-disabled make[10]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[10]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[9]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" /usr/bin/make -C blastdb -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders/blastdb' /bin/echo 'Warning: non-existent sub-project "patcher"' Warning: non-existent sub-project "patcher" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/data_loaders' /usr/bin/make -C simple -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/simple' /usr/bin/make -C alnmgr -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/alnmgr' /bin/echo 'Warning: non-existent sub-project "cddalignview"' Warning: non-existent sub-project "cddalignview" /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" /usr/bin/make -C cleanup -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/cleanup' /usr/bin/make -C format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/format' /usr/bin/make -C edit -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/edit' /bin/echo 'Warning: non-existent sub-project "validator"' Warning: non-existent sub-project "validator" /bin/echo 'Warning: non-existent sub-project "asniotest"' Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /usr/bin/make -C seqmasks_io -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/seqmasks_io' /bin/echo 'Warning: non-existent sub-project "eutils"' Warning: non-existent sub-project "eutils" /usr/bin/make -C align_format -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format/unit_test' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/align_format' /bin/echo 'Warning: non-existent sub-project "snputil"' Warning: non-existent sub-project "snputil" /bin/echo 'Warning: non-existent sub-project "uudutil"' Warning: non-existent sub-project "uudutil" /bin/echo 'Warning: non-existent sub-project "variation"' Warning: non-existent sub-project "variation" /bin/echo 'Warning: non-existent sub-project "writers"' Warning: non-existent sub-project "writers" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" /usr/bin/make -C algo -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo' /usr/bin/make -C dustmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/dustmask' /usr/bin/make -C winmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast' /usr/bin/make -C composition_adjustment -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/make -C core -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/core' /usr/bin/make -C dbindex -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /usr/bin/make -C makeindex -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" /usr/bin/make -C api -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/api' /usr/bin/make -C format -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/format' /usr/bin/make -C blastinput -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /usr/bin/make -C unit_test -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput/unit_test' /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" /usr/bin/make -C igblast -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" /usr/bin/make -C unit_tests -w check_add_r || exit 5 make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests' /usr/bin/make -C blast_format -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blast_format' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/blastdb' /usr/bin/make -C seqdb_reader -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /usr/bin/make -C api -w check_add_r || exit 5 make[8]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test TEST -- algo/blast/unit_tests/api/aalookup_unit_test TEST -- algo/blast/unit_tests/api/seqsrc_unit_test TEST -- algo/blast/unit_tests/api/delta_unit_test TEST -- algo/blast/unit_tests/api/ntlookup_unit_test TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test TEST -- algo/blast/unit_tests/api/setupfactory_unit_test TEST -- algo/blast/unit_tests/api/search_strategy_unit_test TEST -- algo/blast/unit_tests/api/redoalignment_unit_test TEST -- algo/blast/unit_tests/api/queryinfo_unit_test TEST -- algo/blast/unit_tests/api/querydata_unit_test TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test TEST -- algo/blast/unit_tests/api/blastsetup_unit_test TEST -- algo/blast/unit_tests/api/blastextend_unit_test TEST -- algo/blast/unit_tests/api/blastdiag_unit_test TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test TEST -- algo/blast/unit_tests/api/optionshandle_unit_test TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test TEST -- algo/blast/unit_tests/api/traceback_unit_test TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test TEST -- algo/blast/unit_tests/api/psiblast_unit_test TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test TEST -- algo/blast/unit_tests/api/phiblast_unit_test TEST -- algo/blast/unit_tests/api/split_query_unit_test TEST -- algo/blast/unit_tests/api/scoreblk_unit_test TEST -- algo/blast/unit_tests/api/hspstream_unit_test TEST -- algo/blast/unit_tests/api/rps_unit_test TEST -- algo/blast/unit_tests/api/gapinfo_unit_test TEST -- algo/blast/unit_tests/api/blasthits_unit_test TEST -- algo/blast/unit_tests/api/linkhsp_unit_test TEST -- algo/blast/unit_tests/api/blastengine_unit_test TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test TEST -- algo/blast/unit_tests/api/version_reference_unit_test TEST -- algo/blast/unit_tests/api/ntscan_unit_test TEST -- algo/blast/unit_tests/api/aascan_unit_test TEST -- algo/blast/unit_tests/api/remote_blast_unit_test TEST -- algo/blast/unit_tests/api/uniform_search_unit_test TEST -- algo/blast/unit_tests/api/blastfilter_unit_test TEST -- algo/blast/unit_tests/api/blastoptions_unit_test TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test TEST -- algo/blast/unit_tests/api/bl2seq_unit_test TEST -- algo/blast/unit_tests/api/stat_unit_test TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[8]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast' /usr/bin/make -C segmask -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" /bin/echo 'Warning: non-existent sub-project "structure"' Warning: non-existent sub-project "structure" /bin/echo 'Warning: non-existent sub-project "ms"' Warning: non-existent sub-project "ms" /bin/echo 'Warning: non-existent sub-project "gnomon"' Warning: non-existent sub-project "gnomon" /bin/echo 'Warning: non-existent sub-project "tree"' Warning: non-existent sub-project "tree" /bin/echo 'Warning: non-existent sub-project "phy_tree"' Warning: non-existent sub-project "phy_tree" /bin/echo 'Warning: non-existent sub-project "seqqa"' Warning: non-existent sub-project "seqqa" /bin/echo 'Warning: non-existent sub-project "cobalt"' Warning: non-existent sub-project "cobalt" /bin/echo 'Warning: non-existent sub-project "text"' Warning: non-existent sub-project "text" /bin/echo 'Warning: non-existent sub-project "volume_merge"' Warning: non-existent sub-project "volume_merge" /bin/echo 'Warning: non-existent sub-project "primer"' Warning: non-existent sub-project "primer" /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo' /usr/bin/make -C misc -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc' /usr/bin/make -C third_party -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party' make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party' /usr/bin/make -C third_party_static -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc/third_party_static' /bin/echo 'Warning: non-existent sub-project "clog"' Warning: non-existent sub-project "clog" /bin/echo 'Warning: non-existent sub-project "grid_cgi"' Warning: non-existent sub-project "grid_cgi" /bin/echo 'Warning: non-existent sub-project "xmlwrapp"' Warning: non-existent sub-project "xmlwrapp" /bin/echo 'Warning: non-existent sub-project "eutils_client"' Warning: non-existent sub-project "eutils_client" /bin/echo 'Warning: non-existent sub-project "hydra_client"' Warning: non-existent sub-project "hydra_client" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "discrepancy"' Warning: non-existent sub-project "discrepancy" /bin/echo 'Warning: non-existent sub-project "xmlreaders"' Warning: non-existent sub-project "xmlreaders" /bin/echo 'Warning: non-existent sub-project "hgvs"' Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "jsonwrapp"' Warning: non-existent sub-project "jsonwrapp" /bin/echo 'Warning: non-existent sub-project "biosample_util"' Warning: non-existent sub-project "biosample_util" /bin/echo 'Warning: non-existent sub-project "data_loaders_util"' Warning: non-existent sub-project "data_loaders_util" /bin/echo 'Warning: non-existent sub-project "lapackwrapp"' Warning: non-existent sub-project "lapackwrapp" /bin/echo 'Warning: non-existent sub-project "cgi_redirect"' Warning: non-existent sub-project "cgi_redirect" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" /usr/bin/make -C app -w check_add_r || exit 5 make[5]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' Warning: non-existent sub-project "asn2fasta" /bin/echo 'Warning: non-existent sub-project "asn2flat"' Warning: non-existent sub-project "asn2flat" /bin/echo 'Warning: non-existent sub-project "asnval"' Warning: non-existent sub-project "asnval" /bin/echo 'Warning: non-existent sub-project "asn_cleanup"' Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" /usr/bin/make -C blast -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp SKIP -- app/blast/blastn SKIP -- app/blast/blastx SKIP -- app/blast/tblastn SKIP -- app/blast/tblastx SKIP -- app/blast/psiblast SKIP -- app/blast/rpsblast SKIP -- app/blast/rpstblastn SKIP -- app/blast/blast_formatter SKIP -- app/blast/deltablast SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blast' /bin/echo 'Warning: non-existent sub-project "convert_seq"' Warning: non-existent sub-project "convert_seq" /bin/echo 'Warning: non-existent sub-project "nmer_repeats"' Warning: non-existent sub-project "nmer_repeats" /bin/echo 'Warning: non-existent sub-project "objmgr"' Warning: non-existent sub-project "objmgr" /bin/echo 'Warning: non-existent sub-project "gi2taxid"' Warning: non-existent sub-project "gi2taxid" /bin/echo 'Warning: non-existent sub-project "netschedule"' Warning: non-existent sub-project "netschedule" /bin/echo 'Warning: non-existent sub-project "grid"' Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" /usr/bin/make -C winmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/winmasker' /usr/bin/make -C dustmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/dustmasker' /usr/bin/make -C segmasker -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/segmasker' /usr/bin/make -C blastdb -w check_add_r || exit 5 make[6]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd SKIP -- app/blastdb/makeblastdb SKIP -- app/blastdb/blastdb_aliastool SKIP -- app/blastdb/blastdbcheck SKIP -- app/blastdb/convert2blastmask SKIP -- app/blastdb/blastdbcp SKIP -- app/blastdb/makeprofiledb make[6]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app/blastdb' /bin/echo 'Warning: non-existent sub-project "vecscreen"' Warning: non-existent sub-project "vecscreen" /bin/echo 'Warning: non-existent sub-project "agpconvert"' Warning: non-existent sub-project "agpconvert" /bin/echo 'Warning: non-existent sub-project "id2_fetch"' Warning: non-existent sub-project "id2_fetch" /bin/echo 'Warning: non-existent sub-project "agp_validate"' Warning: non-existent sub-project "agp_validate" /bin/echo 'Warning: non-existent sub-project "objextract"' Warning: non-existent sub-project "objextract" /bin/echo 'Warning: non-existent sub-project "bdb_env_keeper"' Warning: non-existent sub-project "bdb_env_keeper" /bin/echo 'Warning: non-existent sub-project "nw_aligner"' Warning: non-existent sub-project "nw_aligner" /bin/echo 'Warning: non-existent sub-project "speedtest"' Warning: non-existent sub-project "speedtest" /bin/echo 'Warning: non-existent sub-project "idmapper"' Warning: non-existent sub-project "idmapper" /bin/echo 'Warning: non-existent sub-project "formatguess"' Warning: non-existent sub-project "formatguess" /bin/echo 'Warning: non-existent sub-project "multireader"' Warning: non-existent sub-project "multireader" /bin/echo 'Warning: non-existent sub-project "read_blast_result"' Warning: non-existent sub-project "read_blast_result" /bin/echo 'Warning: non-existent sub-project "splign"' Warning: non-existent sub-project "splign" /bin/echo 'Warning: non-existent sub-project "hfilter"' Warning: non-existent sub-project "hfilter" /bin/echo 'Warning: non-existent sub-project "annotwriter"' Warning: non-existent sub-project "annotwriter" /bin/echo 'Warning: non-existent sub-project "compart"' Warning: non-existent sub-project "compart" /bin/echo 'Warning: non-existent sub-project "streamtest"' Warning: non-existent sub-project "streamtest" /bin/echo 'Warning: non-existent sub-project "lds2_indexer"' Warning: non-existent sub-project "lds2_indexer" /bin/echo 'Warning: non-existent sub-project "discrepancy_report"' Warning: non-existent sub-project "discrepancy_report" /bin/echo 'Warning: non-existent sub-project "biosample_chk"' Warning: non-existent sub-project "biosample_chk" /bin/echo 'Warning: non-existent sub-project "gap_stats"' Warning: non-existent sub-project "gap_stats" /bin/echo 'Warning: non-existent sub-project "table2asn"' Warning: non-existent sub-project "table2asn" /bin/echo 'Warning: non-existent sub-project "srcchk"' Warning: non-existent sub-project "srcchk" /bin/echo 'Warning: non-existent sub-project "tableval"' Warning: non-existent sub-project "tableval" /bin/echo 'Warning: non-existent sub-project "ncbi_encrypt"' Warning: non-existent sub-project "ncbi_encrypt" /bin/echo 'Warning: non-existent sub-project "ssub_fork"' Warning: non-existent sub-project "ssub_fork" /bin/echo 'Warning: non-existent sub-project "asn_cache"' Warning: non-existent sub-project "asn_cache" /bin/echo 'Warning: non-existent sub-project "magicblast"' Warning: non-existent sub-project "magicblast" /bin/echo 'Warning: non-existent sub-project "split_cache"' Warning: non-existent sub-project "split_cache" /bin/echo 'Warning: non-existent sub-project "wig2table"' Warning: non-existent sub-project "wig2table" /bin/echo 'Warning: non-existent sub-project "netcache"' Warning: non-existent sub-project "netcache" /bin/echo 'Warning: non-existent sub-project "rmblastn"' Warning: non-existent sub-project "rmblastn" /bin/echo 'Warning: non-existent sub-project "dblb"' Warning: non-existent sub-project "dblb" /bin/echo 'Warning: non-existent sub-project "tls"' Warning: non-existent sub-project "tls" /bin/echo 'Warning: non-existent sub-project "idfetch"' Warning: non-existent sub-project "idfetch" make[5]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/app' /bin/echo 'Warning: non-existent sub-project "sample"' Warning: non-existent sub-project "sample" /bin/echo 'Warning: non-existent sub-project "internal"' Warning: non-existent sub-project "internal" make[4]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' ---------------------------------------------------------------------- Building check script... SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_reader/test/seqdb_perf (unmet CHECK_REQUIRES) SKIP -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test (unmet CHECK_REQUIRES) SKIP -- objtools/align_format/unit_test/align_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/blastinput/unit_test/blastinput_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blast_format/blast_format_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/blastdb/bdbloader_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/aalookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqsrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/delta_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntlookup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/seqinfosrc_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/setupfactory_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/search_strategy_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/redoalignment_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/queryinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/querydata_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastsetup_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastextend_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/pssmcreate_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_iteration_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspfilter_culling_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/optionshandle_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/msa2pssm_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/tracebacksearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/traceback_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psibl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/psiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/prelimsearch_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/phiblast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/split_query_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/scoreblk_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/hspstream_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/rps_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gapinfo_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blasthits_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/linkhsp_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastengine_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/subj_ranges_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/version_reference_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/ntscan_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/remote_blast_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/uniform_search_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastfilter_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/blastoptions_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/gencode_singleton_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/bl2seq_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/stat_unit_test (unmet CHECK_REQUIRES) SKIP -- algo/blast/unit_tests/api/magicblast_unit_test (unmet CHECK_REQUIRES) Done. OK -- [serial/datatool] datatool.sh (real 0.16, user 0.10, sys 0.05) SKP -- [serial/datatool] datatool_xml.sh DIS -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.01, user 0.00, sys 0.00) ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.12, user 0.02, sys 0.01) Succeeded : 2 Timeout : 0 Failed : 1 Absent : 2 /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/build-system/Makefile.meta_r:46: recipe for target 'check_r.real' failed make[3]: *** [check_r.real] Error 7 make[3]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build' Makefile:33: recipe for target 'check' failed make[2]: *** [check] Error 2 make[2]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++' dh_auto_test: /usr/bin/make -j1 check VERBOSE=1 returned exit code 2 debian/rules:63: recipe for target 'override_dh_auto_test' failed make[1]: [override_dh_auto_test] Error 2 (ignored) c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err ERR [201] -- [algo/blast/unit_tests/api] aascan_unit_test (real 33.12, user 0.02, sys 0.01) ====================================================================== gene_info_unit_test ====================================================================== 12872/000/0000/PB A159324887D57EB1 0001/0001 2017-01-16T23:31:55.056600 z13-028 UNK_CLIENT UNK_SESSION gene_info_unit_test start /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test/gene_info_unit_test Test setup error: test tree is empty *** No errors detected 12872/000/0000/PE A159324887D57EB1 0002/0002 2017-01-16T23:31:55.057017 z13-028 UNK_CLIENT UNK_SESSION gene_info_unit_test stop 200 0.001459121 All tests are disabled in current configuration. (for autobuild scripts: NCBI_UNITTEST_DISABLED) Command exited with non-zero status 200 real 0.01 user 0.00 sys 0.00 Start time : 01/16/2017 23:31:55 Stop time : 01/16/2017 23:31:55 Load averages: 3.28 3.56 2.30 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 200 ====================================================================== aascan_unit_test ====================================================================== 13008/000/0000/PB A15932D087D57EB1 0001/0001 2017-01-16T23:31:55.132802 z13-028 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test Running 4 test cases... 13008/000/0000/PE A15932D087D57EB1 0002/0002 2017-01-16T23:31:55.202344 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#1000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0003/0003 2017-01-16T23:31:55.202372 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0004/0004 2017-01-16T23:31:55.202394 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0005/0005 2017-01-16T23:31:55.202410 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0007/0007 2017-01-16T23:31:55.203940 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#2000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0008/0008 2017-01-16T23:31:55.203956 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0009/0009 2017-01-16T23:31:55.203973 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0010/0010 2017-01-16T23:31:55.203986 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0012/0012 2017-01-16T23:31:56.205603 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#3000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0013/0013 2017-01-16T23:31:56.205625 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0014/0014 2017-01-16T23:31:56.205642 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0015/0015 2017-01-16T23:31:56.205655 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0017/0017 2017-01-16T23:31:58.707223 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#4000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0018/0018 2017-01-16T23:31:58.707248 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0019/0019 2017-01-16T23:31:58.707266 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0020/0020 2017-01-16T23:31:58.707279 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0022/0022 2017-01-16T23:32:03.459051 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#5000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0023/0023 2017-01-16T23:32:03.459098 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0024/0024 2017-01-16T23:32:03.459117 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0025/0025 2017-01-16T23:32:03.459132 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. 13008/000/0000/PE A15932D087D57EB1 0029/0029 2017-01-16T23:32:03.461046 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#6000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0030/0030 2017-01-16T23:32:03.461063 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0031/0031 2017-01-16T23:32:03.461080 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0032/0032 2017-01-16T23:32:03.461092 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0034/0034 2017-01-16T23:32:03.462364 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#7000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0035/0035 2017-01-16T23:32:03.462380 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0036/0036 2017-01-16T23:32:03.462396 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0037/0037 2017-01-16T23:32:03.462409 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0039/0039 2017-01-16T23:32:04.464047 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#8000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0040/0040 2017-01-16T23:32:04.464081 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0041/0041 2017-01-16T23:32:04.464099 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0042/0042 2017-01-16T23:32:04.464114 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0044/0044 2017-01-16T23:32:06.965773 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#9000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0045/0045 2017-01-16T23:32:06.965820 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0046/0046 2017-01-16T23:32:06.965839 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0047/0047 2017-01-16T23:32:06.965855 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0049/0049 2017-01-16T23:32:11.717678 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#10000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0050/0050 2017-01-16T23:32:11.717723 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0051/0051 2017-01-16T23:32:11.717741 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0052/0052 2017-01-16T23:32:11.717756 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanMaxHitsTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(331): last checkpoint: "ScanMaxHitsTest" fixture entry. 13008/000/0000/PE A15932D087D57EB1 0056/0056 2017-01-16T23:32:11.719650 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#11000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0057/0057 2017-01-16T23:32:11.719670 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0058/0058 2017-01-16T23:32:11.719688 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0059/0059 2017-01-16T23:32:11.719701 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0061/0061 2017-01-16T23:32:11.721051 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#12000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0062/0062 2017-01-16T23:32:11.721067 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0063/0063 2017-01-16T23:32:11.721084 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0064/0064 2017-01-16T23:32:11.721096 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0066/0066 2017-01-16T23:32:12.722573 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#13000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0067/0067 2017-01-16T23:32:12.722594 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0068/0068 2017-01-16T23:32:12.722612 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0069/0069 2017-01-16T23:32:12.722624 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0071/0071 2017-01-16T23:32:15.224206 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#14000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0072/0072 2017-01-16T23:32:15.224231 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0073/0073 2017-01-16T23:32:15.224249 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0074/0074 2017-01-16T23:32:15.224263 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0076/0076 2017-01-16T23:32:19.975938 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#15000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0077/0077 2017-01-16T23:32:19.975975 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0078/0078 2017-01-16T23:32:19.975994 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0079/0079 2017-01-16T23:32:19.976008 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/SkipMaskedRanges": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(384): last checkpoint: "SkipMaskedRanges" fixture entry. 13008/000/0000/PE A15932D087D57EB1 0083/0083 2017-01-16T23:32:19.977840 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#16000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0084/0084 2017-01-16T23:32:19.977856 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0085/0085 2017-01-16T23:32:19.977874 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0086/0086 2017-01-16T23:32:19.977886 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0088/0088 2017-01-16T23:32:19.979222 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#17000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0089/0089 2017-01-16T23:32:19.979238 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0090/0090 2017-01-16T23:32:19.979255 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0091/0091 2017-01-16T23:32:19.979267 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0093/0093 2017-01-16T23:32:20.980952 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#18000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0094/0094 2017-01-16T23:32:20.981000 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0095/0095 2017-01-16T23:32:20.981423 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0096/0096 2017-01-16T23:32:20.981441 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0098/0098 2017-01-16T23:32:23.483159 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#19000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0099/0099 2017-01-16T23:32:23.483198 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0100/0100 2017-01-16T23:32:23.483218 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0101/0101 2017-01-16T23:32:23.483234 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown 13008/000/0000/PE A15932D087D57EB1 0103/0103 2017-01-16T23:32:28.234941 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(302.22) "ncbi_socket.c", line 4066: UNK_FUNC --- SSOCK#20000[?]: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") 13008/000/0000/PE A15932D087D57EB1 0104/0104 2017-01-16T23:32:28.234978 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(303.7) "ncbi_connutil.c", line 1751: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=ID2&address=z13-028.buildd(10.189.64.128)&platform=s390x-ibm-linux-gnu] Failed to connect: Unknown 13008/000/0000/PE A15932D087D57EB1 0105/0105 2017-01-16T23:32:28.234998 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(308.5) "ncbi_service_connector.c", line 95: UNK_FUNC --- [ID2] Service not found 13008/000/0000/PE A15932D087D57EB1 0106/0106 2017-01-16T23:32:28.235013 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test Error: CONNECT(315.2) "ncbi_conn_streambuf.cpp", line 84: ncbi::CConn_Streambuf::CConn_Streambuf() --- CConn_Streambuf::CConn_Streambuf(): NULL connector: Unknown unknown location(0): fatal error: in "aascan/ScanCheckScores": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: ID2(CLoaderException::eConnectionFailed) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp", line 257: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: GENBANK(CLoaderException::eNoConnection) "/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/objtools/data_loaders/genbank/reader.cpp", line 186: ncbi::objects::CReader::OpenInitialConnection() --- cannot open initial connection /build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(434): last checkpoint: "ScanCheckScores" fixture entry. Executed 4 test cases. *** 4 failures are detected in the test module "Master Test Suite" 13008/000/0000/PE A15932D087D57EB1 0110/0110 2017-01-16T23:32:28.235792 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test extra ncbi_phid=A15932D087D57EB10000000000000001 13008/000/0000/PE A15932D087D57EB1 0111/0111 2017-01-16T23:32:28.235809 z13-028 UNK_CLIENT A15932D087D57EB1_0000SID aascan_unit_test stop 201 33.104443073 Command exited with non-zero status 201 real 33.12 user 0.02 sys 0.01 Start time : 01/16/2017 23:31:55 Stop time : 01/16/2017 23:32:28 Load averages: 1.98 3.22 2.23 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 201 make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' fakeroot debian/rules binary-arch dh binary-arch -Dc++ --with autotools_dev dh_testroot -a -O-Dc\+\+ dh_prep -a -O-Dc\+\+ dh_installdirs -a -O-Dc\+\+ debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' # cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp c++/BUILD/bin/* debian/ncbi-blast+/usr/bin/ make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' debian/rules override_dh_install-arch make[1]: Entering directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' # dh_install mv debian/ncbi-blast+/usr/bin/rpsblast debian/ncbi-blast+/usr/bin/rpsblast+ mv debian/ncbi-blast+/usr/bin/seedtop debian/ncbi-blast+/usr/bin/seedtop+ mv debian/ncbi-blast+/usr/bin/legacy_blast.pl debian/ncbi-blast+/usr/bin/legacy_blast mv debian/ncbi-blast+/usr/bin/update_blastdb.pl debian/ncbi-blast+/usr/bin/update_blastdb mv debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter.py \ debian/ncbi-blast+/usr/bin/windowmasker_2.2.22_adapter rm -f debian/ncbi-blast+/usr/bin/*test* debian/ncbi-blast+/usr/bin/seqdb_demo \ debian/ncbi-blast+/usr/bin/datatool debian/ncbi-blast+/usr/bin/run_with_lock \ debian/ncbi-blast+/usr/bin/project_tree_builder for x in debian/ncbi-blast+/usr/bin/*; do \ LD_LIBRARY_PATH=c++/BUILD/lib ldd $x; \ done 2>/dev/null | awk '/BUILD/ { print $3 }' | sort -u | \ xargs cp -v -t debian/ncbi-blast+/usr/lib/ncbi-blast+ 'c++/BUILD/lib/libalign_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libalign_format.so' 'c++/BUILD/lib/libbiblio.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libbiblio.so' 'c++/BUILD/lib/libblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast.so' 'c++/BUILD/lib/libblast_services.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblast_services.so' 'c++/BUILD/lib/libblastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb.so' 'c++/BUILD/lib/libblastdb_format.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastdb_format.so' 'c++/BUILD/lib/libblastinput.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastinput.so' 'c++/BUILD/lib/libblastxml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml.so' 'c++/BUILD/lib/libblastxml2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libblastxml2.so' 'c++/BUILD/lib/libcomposition_adjustment.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcomposition_adjustment.so' 'c++/BUILD/lib/libconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libconnect.so' 'c++/BUILD/lib/libcreaders.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libcreaders.so' 'c++/BUILD/lib/libgbseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgbseq.so' 'c++/BUILD/lib/libgene_info.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgene_info.so' 'c++/BUILD/lib/libgeneral.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgeneral.so' 'c++/BUILD/lib/libgenome_collection.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libgenome_collection.so' 'c++/BUILD/lib/libid1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid1.so' 'c++/BUILD/lib/libid2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libid2.so' 'c++/BUILD/lib/libmedlars.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedlars.so' 'c++/BUILD/lib/libmedline.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmedline.so' 'c++/BUILD/lib/libmla.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmla.so' 'c++/BUILD/lib/libmlacli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libmlacli.so' 'c++/BUILD/lib/libncbi_xloader_blastdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so' 'c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so' 'c++/BUILD/lib/libncbi_xloader_genbank.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so' 'c++/BUILD/lib/libncbi_xreader.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader.so' 'c++/BUILD/lib/libncbi_xreader_cache.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_cache.so' 'c++/BUILD/lib/libncbi_xreader_id1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id1.so' 'c++/BUILD/lib/libncbi_xreader_id2.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xreader_id2.so' 'c++/BUILD/lib/libpub.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpub.so' 'c++/BUILD/lib/libpubmed.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libpubmed.so' 'c++/BUILD/lib/libscoremat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libscoremat.so' 'c++/BUILD/lib/libseq.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseq.so' 'c++/BUILD/lib/libseqcode.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqcode.so' 'c++/BUILD/lib/libseqdb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqdb.so' 'c++/BUILD/lib/libseqedit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqedit.so' 'c++/BUILD/lib/libseqmasks_io.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqmasks_io.so' 'c++/BUILD/lib/libseqset.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqset.so' 'c++/BUILD/lib/libseqsplit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libseqsplit.so' 'c++/BUILD/lib/libsequtil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsequtil.so' 'c++/BUILD/lib/libsubmit.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libsubmit.so' 'c++/BUILD/lib/libtables.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtables.so' 'c++/BUILD/lib/libtaxon1.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon1.so' 'c++/BUILD/lib/libtaxon3.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libtaxon3.so' 'c++/BUILD/lib/libvalid.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libvalid.so' 'c++/BUILD/lib/libwritedb.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libwritedb.so' 'c++/BUILD/lib/libxalgoblastdbindex.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgoblastdbindex.so' 'c++/BUILD/lib/libxalgodustmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgodustmask.so' 'c++/BUILD/lib/libxalgosegmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgosegmask.so' 'c++/BUILD/lib/libxalgowinmask.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalgowinmask.so' 'c++/BUILD/lib/libxalnmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxalnmgr.so' 'c++/BUILD/lib/libxblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblast.so' 'c++/BUILD/lib/libxblastformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxblastformat.so' 'c++/BUILD/lib/libxcgi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcgi.so' 'c++/BUILD/lib/libxcleanup.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcleanup.so' 'c++/BUILD/lib/libxcompress.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxcompress.so' 'c++/BUILD/lib/libxconnect.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxconnect.so' 'c++/BUILD/lib/libxformat.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxformat.so' 'c++/BUILD/lib/libxhtml.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxhtml.so' 'c++/BUILD/lib/libxncbi.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxncbi.so' 'c++/BUILD/lib/libxnetblast.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblast.so' 'c++/BUILD/lib/libxnetblastcli.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxnetblastcli.so' 'c++/BUILD/lib/libxobjmgr.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjmgr.so' 'c++/BUILD/lib/libxobjread.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjread.so' 'c++/BUILD/lib/libxobjutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxobjutil.so' 'c++/BUILD/lib/libxregexp.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxregexp.so' 'c++/BUILD/lib/libxser.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxser.so' 'c++/BUILD/lib/libxutil.so' -> 'debian/ncbi-blast+/usr/lib/ncbi-blast+/libxutil.so' make[1]: Leaving directory '/build/ncbi-blast+-rSgaEP/ncbi-blast+-2.6.0' dh_installdocs -a -O-Dc\+\+ dh_installchangelogs -a -O-Dc\+\+ dh_installexamples -a -O-Dc\+\+ dh_installman -a -O-Dc\+\+ dh_installcatalogs -a -O-Dc\+\+ dh_installcron -a -O-Dc\+\+ dh_installdebconf -a -O-Dc\+\+ dh_installemacsen -a -O-Dc\+\+ dh_installifupdown -a -O-Dc\+\+ dh_installinfo -a -O-Dc\+\+ dh_installinit -a -O-Dc\+\+ dh_installmenu -a -O-Dc\+\+ dh_installmime -a -O-Dc\+\+ dh_installmodules -a -O-Dc\+\+ dh_installlogcheck -a -O-Dc\+\+ dh_installlogrotate -a -O-Dc\+\+ dh_installpam -a -O-Dc\+\+ dh_installppp -a -O-Dc\+\+ dh_installudev -a -O-Dc\+\+ dh_installgsettings -a -O-Dc\+\+ dh_bugfiles -a -O-Dc\+\+ dh_ucf -a -O-Dc\+\+ dh_lintian -a -O-Dc\+\+ dh_gconf -a -O-Dc\+\+ dh_icons -a -O-Dc\+\+ dh_perl -a -O-Dc\+\+ dh_usrlocal -a -O-Dc\+\+ dh_link -a -O-Dc\+\+ dh_installwm -a -O-Dc\+\+ dh_installxfonts -a -O-Dc\+\+ dh_strip_nondeterminism -a -O-Dc\+\+ dh_compress -a -O-Dc\+\+ dh_fixperms -a -O-Dc\+\+ dh_strip -a -O-Dc\+\+ dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: ncbi-blast+ dh_strip debug symbol extraction: packages to act on: ncbi-blast+ dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package ncbi-blast+: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a -O-Dc\+\+ dh_shlibdeps -a -O-Dc\+\+ dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ncbi-blast+/usr/lib/ncbi-blast+/libncbi_xloader_genbank.so was not linked against libconnect.so (it uses none of the library's symbols) dh_installdeb -a -O-Dc\+\+ dh_gencontrol -a -O-Dc\+\+ dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: ncbi-blast+ dh_gencontrol debug symbol wrapper: packages to act on: ncbi-blast+ dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package ncbi-blast+ (pkgdir debian/ncbi-blast+, ddeb package dir debian/ncbi-blast+-dbgsym) dh_gencontrol debug symbol wrapper: building ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O-Dc\+\+ dh_builddeb -a -O-Dc\+\+ INFO: pkgstriptranslations version 131 pkgstriptranslations: processing ncbi-blast+ (in debian/ncbi-blast+); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ncbi-blast+/DEBIAN/control, package ncbi-blast+, directory debian/ncbi-blast+ pkgstripfiles: Truncating usr/share/doc/ncbi-blast+/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package ncbi-blast+ ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.6.0-1_s390x.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ncbi-blast+_2.6.0-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ncbi-blast+-2.6.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170116-2336 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ncbi-blast+_2.6.0-1_s390x.changes: ---------------------------------- Format: 1.8 Date: Sun, 15 Jan 2017 17:12:27 +0000 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy blast2 Architecture: s390x Version: 2.6.0-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Olivier Sallou Description: blast2 - transitional dummy package to ncbi-blast+-legacy ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Changes: ncbi-blast+ (2.6.0-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 25b896130bc8df80d5e27a51fe725ff2a4950dee 100698462 ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb 75790ebe651487d121dd962a5f0b45b6095085d2 8612550 ncbi-blast+_2.6.0-1_s390x.deb Checksums-Sha256: 4709573b64ed1514f714f1e2562d86732d7ecfb82631c2d59080e5a0a3e98077 100698462 ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb 4fb134ec260ecca81747eb3288f5b2cc9d1757383d759497ed90dfb457f66962 8612550 ncbi-blast+_2.6.0-1_s390x.deb Files: e2e59ebf6b4cafedcb2f2304b0998529 100698462 science extra ncbi-blast+-dbgsym_2.6.0-1_s390x.ddeb 0b8ebc0da6bb04f0c7b11098fcd5fb75 8612550 science optional ncbi-blast+_2.6.0-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ncbi-blast+_2.6.0-1_s390x.deb ----------------------------- new debian package, version 2.0. size 8612550 bytes: control archive=3798 bytes. 1310 bytes, 25 lines control 6674 bytes, 101 lines md5sums Package: ncbi-blast+ Version: 2.6.0-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 40359 Depends: ncbi-data, python, perl:any, libbz2-1.0, libc6 (>= 2.15), libgcc1 (>= 1:3.0), libgnutls30 (>= 3.5.6), libgomp1 (>= 4.9), libpcre3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Enhances: t-coffee Section: science Priority: optional Multi-Arch: foreign Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM’s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. drwxr-xr-x root/root 0 2017-01-15 17:12 ./ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/bin/ -rwxr-xr-x root/root 231840 2017-01-15 17:12 ./usr/bin/blast_formatter -rwxr-xr-x root/root 108856 2017-01-15 17:12 ./usr/bin/blastdb_aliastool -rwxr-xr-x root/root 153872 2017-01-15 17:12 ./usr/bin/blastdbcheck -rwxr-xr-x root/root 121216 2017-01-15 17:12 ./usr/bin/blastdbcmd -rwxr-xr-x root/root 67792 2017-01-15 17:12 ./usr/bin/blastdbcp -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/blastn -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/blastp -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/blastx -rwxr-xr-x root/root 67760 2017-01-15 17:12 ./usr/bin/convert2blastmask -rwxr-xr-x root/root 215448 2017-01-15 17:12 ./usr/bin/deltablast -rwxr-xr-x root/root 43168 2017-01-15 17:12 ./usr/bin/dustmasker -rwxr-xr-x root/root 30888 2017-01-15 17:12 ./usr/bin/gene_info_reader -rwxr-xr-x root/root 51346 2017-01-15 17:12 ./usr/bin/legacy_blast -rwxr-xr-x root/root 190744 2017-01-15 17:12 ./usr/bin/makeblastdb -rwxr-xr-x root/root 55456 2017-01-15 17:12 ./usr/bin/makembindex -rwxr-xr-x root/root 149768 2017-01-15 17:12 ./usr/bin/makeprofiledb -rwxr-xr-x root/root 219544 2017-01-15 17:12 ./usr/bin/psiblast -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/rpsblast+ -rwxr-xr-x root/root 186776 2017-01-15 17:12 ./usr/bin/rpstblastn -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/seedtop+ -rwxr-xr-x root/root 43176 2017-01-15 17:12 ./usr/bin/segmasker -rwxr-xr-x root/root 43184 2017-01-15 17:12 ./usr/bin/seqdb_perf -rwxr-xr-x root/root 199064 2017-01-15 17:12 ./usr/bin/tblastn -rwxr-xr-x root/root 190872 2017-01-15 17:12 ./usr/bin/tblastx -rwxr-xr-x root/root 12488 2017-01-15 17:12 ./usr/bin/update_blastdb -rwxr-xr-x root/root 51360 2017-01-15 17:12 ./usr/bin/windowmasker -rwxr-xr-x root/root 5950 2017-01-15 17:12 ./usr/bin/windowmasker_2.2.22_adapter drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/lib/ drwxr-xr-x root/root 0 2017-01-15 17:12 ./usr/lib/ncbi-blast+/ -rw-r--r-- root/root 1005592 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libalign_format.so -rw-r--r-- root/root 358432 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libbiblio.so -rw-r--r-- root/root 730504 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblast.so -rw-r--r-- root/root 59408 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblast_services.so -rw-r--r-- root/root 88080 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastdb.so -rw-r--r-- root/root 161824 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastdb_format.so -rw-r--r-- root/root 678056 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastinput.so -rw-r--r-- root/root 79888 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastxml.so -rw-r--r-- root/root 182288 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libblastxml2.so -rw-r--r-- root/root 84072 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libcomposition_adjustment.so -rw-r--r-- root/root 440448 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libconnect.so -rw-r--r-- root/root 46944 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libcreaders.so -rw-r--r-- root/root 243728 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libgbseq.so -rw-r--r-- root/root 71688 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libgene_info.so -rw-r--r-- root/root 416176 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libgeneral.so -rw-r--r-- root/root 366608 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libgenome_collection.so -rw-r--r-- root/root 100368 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libid1.so -rw-r--r-- root/root 309264 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libid2.so -rw-r--r-- root/root 34832 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libmedlars.so -rw-r--r-- root/root 124944 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libmedline.so -rw-r--r-- root/root 75792 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libmla.so -rw-r--r-- root/root 51208 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libmlacli.so -rw-r--r-- root/root 125000 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb.so -rw-r--r-- root/root 120856 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xloader_blastdb_rmt.so -rw-r--r-- root/root 215352 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xloader_genbank.so -rw-r--r-- root/root 966784 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xreader.so -rw-r--r-- root/root 227488 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xreader_cache.so -rw-r--r-- root/root 141760 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xreader_id1.so -rw-r--r-- root/root 104936 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libncbi_xreader_id2.so -rw-r--r-- root/root 145424 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libpub.so -rw-r--r-- root/root 34832 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libpubmed.so -rw-r--r-- root/root 157712 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libscoremat.so -rw-r--r-- root/root 6375264 2017-01-15 17:12 ./usr/lib/ncbi-blast+/libseq.so -rw-r--r-- root/root 71696 2017-01-15 17:12 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 3249116 Build-Time: 1352 Distribution: zesty-proposed Host Architecture: s390x Install-Time: 51 Job: ncbi-blast+_2.6.0-1.dsc Machine Architecture: s390x Package: ncbi-blast+ Package-Time: 1404 Source-Version: 2.6.0-1 Space: 3249116 Status: successful Version: 2.6.0-1 -------------------------------------------------------------------------------- Finished at 20170116-2336 Build needed 00:23:24, 3249116k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11870429'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11870429/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11870429'] Unmounting chroot for build PACKAGEBUILD-11870429... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11870429'] Removing build PACKAGEBUILD-11870429