https://launchpad.net/ubuntu/+source/ncbi-vdb/2.9.2-1+dfsg-1build1/+build/15767272 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-028 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 Dec 07:51:05 ntpdate[1826]: adjust time server 10.211.37.1 offset -0.013646 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15767272 /home/buildd/filecache-default/c94e68d26d8f9980ef1477bde7a83b553e812c5f Creating target for build PACKAGEBUILD-15767272 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15767272 Starting target for build PACKAGEBUILD-15767272 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15767272 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15767272 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15767272 Updating target for build PACKAGEBUILD-15767272 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [958 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8650 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5148 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [59.0 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [35.0 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [467 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [234 kB] Fetched 16.5 MB in 6s (2572 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common cpp cpp-8 dash dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi6 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgmp10 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libip4tc0 libkmod2 libmpfr6 libnettle6 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 linux-libc-dev lockfile-progs openssl perl perl-base sed systemd systemd-sysv tar tzdata 76 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 46.6 MB of archives. After this operation, 40.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf base-files armhf 10.1ubuntu8 [59.8 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf tar armhf 1.30+dfsg-3 [218 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dpkg armhf 1.19.2ubuntu2 [1056 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dash armhf 0.5.10.2-2 [81.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf findutils armhf 4.6.0+git+20181018-1 [279 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf grep armhf 3.1-3 [140 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf hostname armhf 3.21 [10.3 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf perl-modules-5.28 all 5.28.1-3 [2812 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm6 armhf 1.18.1-2 [24.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf libgdbm-compat4 armhf 1.18.1-2 [5788 B] Get:11 http://ftpmaster.internal/ubuntu disco/main armhf libperl5.28 armhf 5.28.1-3 [3140 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf perl armhf 5.28.1-3 [204 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf perl-base armhf 5.28.1-3 [1399 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.2 [590 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.5-2 [178 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf init-system-helpers all 1.56 [38.8 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf libcc1-0 armhf 8.2.0-12ubuntu1 [32.5 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8-base armhf 8.2.0-12ubuntu1 [18.7 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf libgcc1 armhf 1:8.2.0-12ubuntu1 [37.1 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf libgomp1 armhf 8.2.0-12ubuntu1 [66.6 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libatomic1 armhf 8.2.0-12ubuntu1 [7052 B] Get:22 http://ftpmaster.internal/ubuntu disco/main armhf libasan5 armhf 8.2.0-12ubuntu1 [348 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libubsan1 armhf 8.2.0-12ubuntu1 [109 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf g++-8 armhf 8.2.0-12ubuntu1 [6428 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++-8-dev armhf 8.2.0-12ubuntu1 [1596 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libgcc-8-dev armhf 8.2.0-12ubuntu1 [632 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf gcc-8 armhf 8.2.0-12ubuntu1 [6350 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf cpp-8 armhf 8.2.0-12ubuntu1 [5643 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libstdc++6 armhf 8.2.0-12ubuntu1 [350 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf libgmp10 armhf 2:6.1.2+dfsg-4 [191 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf libmpfr6 armhf 4.0.1-2 [196 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libbinutils armhf 2.31.1-10ubuntu1 [309 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf binutils-common armhf 2.31.1-10ubuntu1 [194 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf binutils armhf 2.31.1-10ubuntu1 [3348 B] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-10ubuntu1 [2152 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libudev1 armhf 239-7ubuntu15 [49.0 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libapt-pkg5.0 armhf 1.8.0~alpha2ubuntu1 [731 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf libnettle6 armhf 3.4.1~rc1-1 [124 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main armhf libhogweed4 armhf 3.4.1~rc1-1 [129 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf libgnutls30 armhf 3.6.4-2ubuntu2 [688 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libseccomp2 armhf 2.3.3-3ubuntu2 [30.5 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf apt armhf 1.8.0~alpha2ubuntu1 [1130 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf systemd-sysv armhf 239-7ubuntu15 [9396 B] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf libapparmor1 armhf 2.12-4ubuntu10 [25.7 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:46 http://ftpmaster.internal/ubuntu disco/main armhf libcap-ng0 armhf 0.7.9-1build1 [9600 B] Get:47 http://ftpmaster.internal/ubuntu disco/main armhf libaudit1 armhf 1:2.8.3-1ubuntu3 [35.5 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main armhf libgpg-error0 armhf 1.32-3 [48.1 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libkmod2 armhf 25-1ubuntu2 [35.5 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main armhf systemd armhf 239-7ubuntu15 [2807 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main armhf libsystemd0 armhf 239-7ubuntu15 [192 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main armhf libext2fs2 armhf 1.44.4-2ubuntu1 [145 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main armhf e2fsprogs armhf 1.44.4-2ubuntu1 [490 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main armhf init armhf 1.56 [6652 B] Get:55 http://ftpmaster.internal/ubuntu disco/main armhf libgcrypt20 armhf 1.8.4-3ubuntu1 [364 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main armhf libselinux1 armhf 2.8-1build2 [59.1 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-1build2 [6892 B] Get:58 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-1build2 [72.5 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main armhf libffi6 armhf 3.2.1-9 [16.1 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main armhf libcom-err2 armhf 1.44.4-2ubuntu1 [7956 B] Get:61 http://ftpmaster.internal/ubuntu disco/main armhf libss2 armhf 1.44.4-2ubuntu1 [9324 B] Get:62 http://ftpmaster.internal/ubuntu disco/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu4 [118 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu4 [73.6 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main armhf libip4tc0 armhf 1.6.1-2ubuntu3 [17.7 kB] Get:65 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.26.0-3 [449 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main armhf libssl1.1 armhf 1.1.1a-1ubuntu2 [1064 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main armhf openssl armhf 1.1.1a-1ubuntu2 [592 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018g-1 [188 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main armhf g++ armhf 4:8.2.0-2ubuntu2 [1616 B] Get:70 http://ftpmaster.internal/ubuntu disco/main armhf gcc armhf 4:8.2.0-2ubuntu2 [5236 B] Get:71 http://ftpmaster.internal/ubuntu disco/main armhf cpp armhf 4:8.2.0-2ubuntu2 [27.6 kB] Get:72 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:73 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main armhf e2fslibs armhf 1.44.4-2ubuntu1 [2712 B] Get:75 http://ftpmaster.internal/ubuntu disco/main armhf libfakeroot armhf 1.23-1 [21.4 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main armhf fakeroot armhf 1.23-1 [60.3 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main armhf libcomerr2 armhf 1.44.4-2ubuntu1 [2712 B] Get:78 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.19.0-9.10 [1024 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main armhf lockfile-progs armhf 0.1.18 [9372 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.6 MB in 2s (22.0 MB/s) (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_armhf.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-3_armhf.deb ... Unpacking tar (1.30+dfsg-3) over (1.30+dfsg-2) ... Setting up tar (1.30+dfsg-3) ... (Reading database ... 12386 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_armhf.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.0.5ubuntu5) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12372 files and directories currently installed.) 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Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15767272 armhf disco-proposed -c chroot:build-PACKAGEBUILD-15767272 --arch=armhf --dist=disco-proposed --nolog ncbi-vdb_2.9.2-1+dfsg-1build1.dsc Initiating build PACKAGEBUILD-15767272 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:10:28 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-028.buildd +==============================================================================+ | ncbi-vdb 2.9.2-1+dfsg-1build1 (armhf) 13 Dec 2018 07:51 | +==============================================================================+ Package: ncbi-vdb Version: 2.9.2-1+dfsg-1build1 Source Version: 2.9.2-1+dfsg-1build1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/ncbi-vdb-0lnM0l/ncbi-vdb-2.9.2-1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-vdb-0lnM0l' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15767272/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-vdb_2.9.2-1+dfsg-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-rtc2qD/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-rtc2qD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rtc2qD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rtc2qD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rtc2qD/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-rtc2qD/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (131 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-rtc2qD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14242 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.82), libbz2-dev, libxml2-dev, libhdf5-dev, libmagic-dev, libngs-sdk-dev, libngs-java, libmbedtls-dev, zlib1g-dev, default-jdk-headless Filtered Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.82), libbz2-dev, libxml2-dev, libhdf5-dev, libmagic-dev, libngs-sdk-dev, libngs-java, libmbedtls-dev, zlib1g-dev, default-jdk-headless dpkg-deb: building package 'sbuild-build-depends-ncbi-vdb-dummy' in '/<>/resolver-r4cS7Y/apt_archive/sbuild-build-depends-ncbi-vdb-dummy.deb'. Ign:1 copy:/<>/resolver-r4cS7Y/apt_archive ./ InRelease Get:2 copy:/<>/resolver-r4cS7Y/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-r4cS7Y/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-r4cS7Y/apt_archive ./ Sources [286 B] Get:5 copy:/<>/resolver-r4cS7Y/apt_archive ./ Packages [606 B] Fetched 3011 B in 0s (110 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-vdb build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-ncbi-vdb-dummy : Depends: libngs-sdk-dev but it is not installable Depends: libngs-java but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. Package installation failed Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following packages will be REMOVED: sbuild-build-depends-core-dummy* 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 0 B of additional disk space will be used. (Reading database ... 14242 files and directories currently installed.) Removing sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 0 Build-Time: 0 Distribution: disco-proposed Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: ncbi-vdb_2.9.2-1+dfsg-1build1.dsc Machine Architecture: arm64 Package: ncbi-vdb Package-Time: 0 Source-Version: 2.9.2-1+dfsg-1build1 Space: 0 Status: failed Version: 2.9.2-1+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 20181213-0751 Build needed 00:00:00, 0k disc space E: Package build dependencies not satisfied; skipping RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-15767272 Scanning for processes to kill in build PACKAGEBUILD-15767272