https://launchpad.net/ubuntu/+source/ncbi-vdb/2.9.3+dfsg-2/+build/17955161 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-018 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:04 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Jan 19:15:43 ntpdate[1863]: adjust time server 10.211.37.1 offset -0.000610 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-17955161 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-17955161 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-17955161 Starting target for build PACKAGEBUILD-17955161 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-17955161 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-17955161 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-17955161 Updating target for build PACKAGEBUILD-17955161 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x Packages [915 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main Translation-en [500 kB] Get:4 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8292 kB] Get:5 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5171 kB] Fetched 15.1 MB in 3s (5591 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 91 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 49.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.30-0ubuntu3 [2060 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.30-0ubuntu3 [63.9 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.4.0-9.12 [1081 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22-2 [546 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x libcc1-0 s390x 9.2.1-21ubuntu1 [46.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-6ubuntu3 [1468 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-6ubuntu3 [301 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-6ubuntu3 [3328 B] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9-base s390x 9.2.1-21ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libgcc1 s390x 1:9.2.1-21ubuntu1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libgomp1 s390x 9.2.1-21ubuntu1 [83.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libitm1 s390x 9.2.1-21ubuntu1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libatomic1 s390x 9.2.1-21ubuntu1 [8264 B] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libasan5 s390x 9.2.1-21ubuntu1 [361 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libubsan1 s390x 9.2.1-21ubuntu1 [125 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x g++-9 s390x 9.2.1-21ubuntu1 [8609 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++-9-dev s390x 9.2.1-21ubuntu1 [1673 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-9-dev s390x 9.2.1-21ubuntu1 [704 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x gcc-9 s390x 9.2.1-21ubuntu1 [8095 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x cpp-9 s390x 9.2.1-21ubuntu1 [7454 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++6 s390x 9.2.1-21ubuntu1 [504 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.30-0ubuntu3 [2289 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu2 [60.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-5ubuntu1 [622 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu4 [61.5 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu4 [128 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu4 [20.5 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu4 [160 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 3.0-1 [65.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu4 [137 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu4 [93.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu4 [113 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu4 [981 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.250ubuntu2 [6152 B] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.30-0ubuntu3 [547 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 244-3ubuntu1 [9364 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5ubuntu1 [18.3 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu1 [33.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu5 [37.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 244-3ubuntu1 [71.8 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu7 [122 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-1ubuntu1 [160 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.15.0-2 [36.9 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2 [684 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.2-2ubuntu2 [38.2 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu4 [110 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 244-3ubuntu1 [3325 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 244-3ubuntu1 [239 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-1 [217 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.5 [789 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.17-3ubuntu1 [186 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x apt s390x 1.9.5 [1242 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 3.0-1 [9880 B] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 3.0-1 [80.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1ubuntu1 [504 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.17-3ubuntu1 [442 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.17-3ubuntu1 [119 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.17-3ubuntu1 [217 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 1s (80.8 MB/s) (Reading database ... 12530 files and directories currently installed.) 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up binutils (2.33.1-6ubuntu3) ... Setting up libgcc-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-21ubuntu1) ... Setting up libc6-dev:s390x (2.30-0ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.2.2-1ubuntu1) ... Setting up gcc-9 (9.2.1-21ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.2.1-21ubuntu1) ... Setting up systemd (244-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.2.1-21ubuntu1) ... Setting up systemd-sysv (244-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17955161 s390x focal -c chroot:build-PACKAGEBUILD-17955161 --arch=s390x --dist=focal --nolog ncbi-vdb_2.9.3+dfsg-2.dsc Initiating build PACKAGEBUILD-17955161 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:04 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-018.buildd +==============================================================================+ | ncbi-vdb 2.9.3+dfsg-2 (s390x) 10 Jan 2020 19:16 | +==============================================================================+ Package: ncbi-vdb Version: 2.9.3+dfsg-2 Source Version: 2.9.3+dfsg-2 Distribution: focal Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/ncbi-vdb-YzHiC3/ncbi-vdb-2.9.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-vdb-YzHiC3' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17955161/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ncbi-vdb_2.9.3+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-2AG9b_/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-2AG9b_/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2AG9b_/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2AG9b_/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2AG9b_/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-2AG9b_/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-2AG9b_/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14445 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.82), libbz2-dev, libxml2-dev, libhdf5-dev, libmagic-dev, libngs-sdk-dev, libngs-java, libmbedtls-dev, zlib1g-dev, default-jdk-headless Filtered Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.82), libbz2-dev, libxml2-dev, libhdf5-dev, libmagic-dev, libngs-sdk-dev, libngs-java, libmbedtls-dev, zlib1g-dev, default-jdk-headless dpkg-deb: building package 'sbuild-build-depends-ncbi-vdb-dummy' in '/<>/resolver-SJH6wk/apt_archive/sbuild-build-depends-ncbi-vdb-dummy.deb'. Ign:1 copy:/<>/resolver-SJH6wk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-SJH6wk/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-SJH6wk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-SJH6wk/apt_archive ./ Sources [286 B] Get:5 copy:/<>/resolver-SJH6wk/apt_archive ./ Packages [607 B] Fetched 3012 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ncbi-vdb build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java d-shlibs debhelper default-jdk-headless default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian java-common libaec-dev libaec0 libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libbz2-dev libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-103 libhdf5-cpp-103 libhdf5-dev libicu-dev libicu63 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic-dev libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libngs-java libngs-sdk-dev libngs-sdk2 libnspr4 libnss3 libpcsclite1 libpipeline1 libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxml2-dev libxrender1 libxtst6 m4 man-db openjdk-11-jdk-headless openjdk-11-jre-headless po-debconf ucf x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make default-jre gettext-doc libasprintf-dev libgettextpo-dev groff libasound2-plugins alsa-utils cups-common krb5-doc krb5-user libhdf5-doc icu-doc liblcms2-utils libmbedtls-doc pcscd libtool-doc gfortran | fortran95-compiler gcj-jdk pkg-config m4-doc apparmor less www-browser openjdk-11-demo openjdk-11-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates-java d-shlibs debhelper default-jdk-headless default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian java-common libaec-dev libaec0 libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbsd0 libbz2-dev libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhdf5-103 libhdf5-cpp-103 libhdf5-dev libicu-dev libicu63 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic-dev libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libngs-java libngs-sdk-dev libngs-sdk2 libnspr4 libnss3 libpcsclite1 libpipeline1 libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxml2-dev libxrender1 libxtst6 m4 man-db openjdk-11-jdk-headless openjdk-11-jre-headless po-debconf sbuild-build-depends-ncbi-vdb-dummy ucf x11-common zlib1g-dev 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu focal/universe s390x libhdf5-cpp-103 s390x 1.10.4+repack-10 [106 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1ubuntu3 [173 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-turbo8-dev s390x 2.0.3-0ubuntu1 [214 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:88 http://ftpmaster.internal/ubuntu focal/universe s390x libaec-dev s390x 1.0.4-1 [17.5 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe s390x libhdf5-dev s390x 1.10.4+repack-10 [2374 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x libicu-dev s390x 63.2-2 [8890 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-dev s390x 1:5.37-6ubuntu1 [85.8 kB] Get:92 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedcrypto3 s390x 2.16.3-1 [144 kB] Get:93 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedx509-0 s390x 2.16.3-1 [40.4 kB] Get:94 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedtls12 s390x 2.16.3-1 [63.3 kB] Get:95 http://ftpmaster.internal/ubuntu focal/universe s390x libmbedtls-dev s390x 2.16.3-1 [427 kB] Get:96 http://ftpmaster.internal/ubuntu focal/universe s390x libngs-sdk2 s390x 2.10.0-3 [45.5 kB] Get:97 http://ftpmaster.internal/ubuntu focal/universe s390x libngs-sdk-dev s390x 2.10.0-3 [85.8 kB] Get:98 http://ftpmaster.internal/ubuntu focal/universe s390x libngs-java s390x 2.10.0-3 [76.2 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main s390x libxml2-dev s390x 2.9.4+dfsg1-8ubuntu2 [779 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 263 MB in 8s (31.5 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 14445 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_s390x.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.2-2_s390x.deb ... Unpacking libpipeline1:s390x (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-2_s390x.deb ... Unpacking man-db (2.9.0-2) ... 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Unpacking libaec-dev:s390x (1.0.4-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../87-libhdf5-dev_1.10.4+repack-10_s390x.deb ... Unpacking libhdf5-dev (1.10.4+repack-10) ... Selecting previously unselected package libicu-dev:s390x. Preparing to unpack .../88-libicu-dev_63.2-2_s390x.deb ... Unpacking libicu-dev:s390x (63.2-2) ... Selecting previously unselected package libmagic-dev:s390x. Preparing to unpack .../89-libmagic-dev_1%3a5.37-6ubuntu1_s390x.deb ... Unpacking libmagic-dev:s390x (1:5.37-6ubuntu1) ... Selecting previously unselected package libmbedcrypto3:s390x. Preparing to unpack .../90-libmbedcrypto3_2.16.3-1_s390x.deb ... Unpacking libmbedcrypto3:s390x (2.16.3-1) ... Selecting previously unselected package libmbedx509-0:s390x. Preparing to unpack .../91-libmbedx509-0_2.16.3-1_s390x.deb ... Unpacking libmbedx509-0:s390x (2.16.3-1) ... Selecting previously unselected package libmbedtls12:s390x. 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Selecting previously unselected package sbuild-build-depends-ncbi-vdb-dummy. Preparing to unpack .../98-sbuild-build-depends-ncbi-vdb-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-ncbi-vdb-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.2.9-1) ... Setting up libpipeline1:s390x (1.5.2-2) ... Setting up liblcms2-2:s390x (2.9-4) ... Setting up libxau6:s390x (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:s390x (1.6-6ubuntu1) ... Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up java-common (0.72) ... Setting up libmagic-mgc (1:5.37-6ubuntu1) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.3-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up x11-common (1:7.7+19ubuntu13) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:s390x (1:5.37-6ubuntu1) ... Setting up libngs-sdk2 (2.10.0-3) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6ubuntu1) ... Setting up libmagic-dev:s390x (1:5.37-6ubuntu1) ... Setting up libaec0:s390x (1.0.4-1) ... Setting up libicu63:s390x (63.2-2) ... Setting up libkrb5support0:s390x (1.17-6ubuntu3) ... Setting up libasound2-data (1.1.9-0ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libfreetype6:s390x (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libnspr4:s390x (2:4.24-1) ... Setting up libavahi-common-data:s390x (0.7-4ubuntu6) ... Setting up libdbus-1-3:s390x (1.12.16-2ubuntu2) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up icu-devtools (63.2-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up d-shlibs (0.88) ... Setting up libngs-sdk-dev (2.10.0-3) ... Setting up libpcsclite1:s390x (1.8.26-1ubuntu1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:s390x (1.17-6ubuntu3) ... Setting up libjpeg-turbo8:s390x (2.0.3-0ubuntu1) ... Setting up libgfortran5:s390x (9.2.1-21ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libasound2:s390x (1.1.9-0ubuntu1) ... Setting up libmbedcrypto3:s390x (2.16.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:s390x (1.17-6ubuntu3) ... Setting up libngs-java (2.10.0-3) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libicu-dev:s390x (63.2-2) ... Setting up libxml2:s390x (2.9.4+dfsg1-8ubuntu2) ... Setting up libsz2:s390x (1.0.4-1) ... Setting up libbz2-dev:s390x (1.0.8-2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libjpeg-turbo8-dev:s390x (2.0.3-0ubuntu1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu1) ... Setting up libxcb1:s390x (1.13.1-3build1) ... Setting up libtool (2.4.6-11) ... Setting up libmbedx509-0:s390x (2.16.3-1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libmbedtls12:s390x (2.16.3-1) ... Setting up libaec-dev:s390x (1.0.4-1) ... Setting up libavahi-common3:s390x (0.7-4ubuntu6) ... Setting up m4 (1.4.18-4) ... Setting up libnss3:s390x (2:3.47-1ubuntu2) ... Setting up libmbedtls-dev:s390x (2.16.3-1) ... Setting up libxml2-dev:s390x (2.9.4+dfsg1-8ubuntu2) ... Setting up libhdf5-103:s390x (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:s390x (1.17-6ubuntu3) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libx11-6:s390x (2:1.6.8-1) ... Setting up libfontconfig1:s390x (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libavahi-client3:s390x (0.7-4ubuntu6) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libhdf5-cpp-103:s390x (1.10.4+repack-10) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libcups2:s390x (2.3.0-7ubuntu1) ... Setting up libxi6:s390x (2:1.7.10-0ubuntu1) ... Setting up libxtst6:s390x (2:1.2.3-1) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:s390x (11.0.5+10-2ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up debhelper (12.7.1ubuntu1) ... Setting up openjdk-11-jdk-headless:s390x (11.0.5+10-2ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-s390x/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode Setting up default-jdk-headless (2:1.11-72) ... Setting up ca-certificates-java (20190405ubuntu1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Secure_Global_CA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:AffirmTrust_Networking.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:AffirmTrust_Premium.pem Adding debian:ISRG_Root_X1.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:AddTrust_External_Root.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Izenpe.com.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:EC-ACC.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Certigna.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:ACCVRAIZ1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem done. Setting up sbuild-build-depends-ncbi-vdb-dummy (0.invalid.0) ... Processing triggers for systemd (244-3ubuntu1) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-171-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-21ubuntu1 gcc-9_9.2.1-21ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 linux-libc-dev_5.4.0-9.12 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 binutils-s390x-linux-gnu_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 ca-certificates-java_20190405ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-21ubuntu1 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9.1 default-jdk-headless_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu4 file_1:5.37-6ubuntu1 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-21ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-21ubuntu1 gcc-9-base_9.2.1-21ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.3-1build1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hdf5-helpers_1.10.4+repack-10 hostname_3.23 icu-devtools_63.2-2 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 java-common_0.72 libacl1_2.2.53-5ubuntu1 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.5 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-21ubuntu1 libasound2_1.1.9-0ubuntu1 libasound2-data_1.1.9-0ubuntu1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-21ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libavahi-client3_0.7-4ubuntu6 libavahi-common-data_0.7-4ubuntu6 libavahi-common3_0.7-4ubuntu6 libbinutils_2.33.1-6ubuntu3 libblkid1_2.34-0.1ubuntu4 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-21ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-1ubuntu1 libcups2_2.3.0-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdbus-1-3_1.12.16-2ubuntu2 libdebconfclient0_0.250ubuntu2 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu7 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu4 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-21ubuntu1 libgcc1_1:9.2.1-21ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-21ubuntu1 libglib2.0-0_2.63.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-21ubuntu1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6ubuntu3 libhdf5-103_1.10.4+repack-10 libhdf5-cpp-103_1.10.4+repack-10 libhdf5-dev_1.10.4+repack-10 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libisl22_0.22-2 libitm1_9.2.1-21ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg-turbo8-dev_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6ubuntu3 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-3_1.17-6ubuntu3 libkrb5support0_1.17-6ubuntu3 liblcms2-2_2.9-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-dev_1:5.37-6ubuntu1 libmagic-mgc_1:5.37-6ubuntu1 libmagic1_1:5.37-6ubuntu1 libmbedcrypto3_2.16.3-1 libmbedtls-dev_2.16.3-1 libmbedtls12_2.16.3-1 libmbedx509-0_2.16.3-1 libmount1_2.34-0.1ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libngs-java_2.10.0-3 libngs-sdk-dev_2.10.0-3 libngs-sdk2_2.10.0-3 libnpth0_1.6-1 libnspr4_2:4.24-1 libnss3_2:3.47-1ubuntu2 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libpcsclite1_1.8.26-1ubuntu1 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libreadline8_8.0-3 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu4 libsqlite3-0_3.30.1-1ubuntu1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-21ubuntu1 libstdc++6_9.2.1-21ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244-3ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.15.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libubsan1_9.2.1-21ubuntu1 libuchardet0_0.0.6-3 libudev1_244-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu4 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.13.1-3build1 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxi6_2:1.7.10-0ubuntu1 libxml2_2.9.4+dfsg1-8ubuntu2 libxml2-dev_2.9.4+dfsg1-8ubuntu2 libxrender1_1:0.9.10-1 libxtst6_2:1.2.3-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-9.12 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu4 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openjdk-11-jdk-headless_11.0.5+10-2ubuntu1 openjdk-11-jre-headless_11.0.5+10-2ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-vdb-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu4 x11-common_1:7.7+19ubuntu13 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jan 14 21:19:04 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-vdb_2.9.3+dfsg-2.dsc dpkg-source: info: extracting ncbi-vdb in ncbi-vdb-2.9.3+dfsg dpkg-source: info: unpacking ncbi-vdb_2.9.3+dfsg.orig.tar.xz dpkg-source: info: unpacking ncbi-vdb_2.9.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debug_configure.patch dpkg-source: info: applying find_hdf5_serial.patch dpkg-source: info: applying find_ngs-sdk.patch dpkg-source: info: applying skip_failing_test.patch dpkg-source: info: applying fix_install_target.patch dpkg-source: info: applying use_debian_packaged_zlib.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying remove_-m64_flag.patch dpkg-source: info: applying add_-msse2.patch dpkg-source: info: applying use_debian_packaged_libmbedx.patch dpkg-source: info: applying mbedtls_ssl_init.patch dpkg-source: info: applying i386-uint64_msbit.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17955161 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17955161 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17955161 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-vdb dpkg-buildpackage: info: source version 2.9.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/ncbi-vdb-2.9.3+dfsg' if [ -e ngs-sdk/Makefile.config.linux.s390x ] ; then \ dh_auto_clean ; \ fi rm -rf ncbi-vdb/s390x-linux-gnu make[1]: Leaving directory '/<>/ncbi-vdb-2.9.3+dfsg' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/ncbi-vdb-2.9.3+dfsg' # that's no standard configure script lacking support of default options # The build system shamelessly ignores those options like # --with-ngs-java-prefix=/usr/share/java # so we need to go with patches. The options are specified anyway. ln -s /usr/lib/jvm/default-java/include/jni.h libs/ngs-jni ln -s /usr/lib/jvm/default-java/include/linux/jni_md.h libs/ngs-jni ./configure --build=s390x-linux-gnu --prefix=/usr --build-prefix=/<>/ncbi-vdb-2.9.3+dfsg/debian/tmp/usr --with-ngs-sdk-prefix=/usr --with-debug --with-ngs-java-prefix=/usr/share/java Configuring NCBI-VDB package checking system type... Linux checking OS distributor... checking machine architecture... s390x configure: error: unsupported architecture 'Linux' make[1]: *** [debian/rules:41: override_dh_auto_configure] Error 1 make[1]: Leaving directory '/<>/ncbi-vdb-2.9.3+dfsg' make: *** [debian/rules:26: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20200110-1916 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 67236 Build-Time: 1 Distribution: focal Fail-Stage: build Host Architecture: s390x Install-Time: 28 Job: ncbi-vdb_2.9.3+dfsg-2.dsc Machine Architecture: s390x Package: ncbi-vdb Package-Time: 32 Source-Version: 2.9.3+dfsg-2 Space: 67236 Status: attempted Version: 2.9.3+dfsg-2 -------------------------------------------------------------------------------- Finished at 20200110-1916 Build needed 00:00:32, 67236k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-17955161 Scanning for processes to kill in build PACKAGEBUILD-17955161