RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '905718-2065354', '/home/buildd/filecache-default/274fe0420a2d0218d9c9f19c3187bd210e11f50c'] Synching the system clock with the buildd NTP service... 16 Mar 09:11:09 ntpdate[2995]: adjust time server 10.122.37.1 offset -0.000161 sec Unpacking chroot for build 905718-2065354 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '905718-2065354'] Mounting chroot for build 905718-2065354 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '905718-2065354', 'main'] Attempting OGRE for main in build-905718-2065354 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '905718-2065354', 'deb http://ftpmaster.internal/ubuntu jaunty main'] Overriding sources.list in build-905718-2065354 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '905718-2065354'] Updating debian chroot for build 905718-2065354 Get:1 http://ftpmaster.internal jaunty Release.gpg [189B] Get:2 http://ftpmaster.internal jaunty Release [74.6kB] Get:3 http://ftpmaster.internal jaunty/main Packages [1251kB] Fetched 1326kB in 1s (1186kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: python2.6-minimal The following packages will be upgraded: apt base-files bash cpp-4.3 debconf debconf-english g++-4.3 gcc-4.3 gcc-4.3-base initscripts libc6 libc6-dev libgcc1 libgmp3c2 libgomp1 libpam-modules libpam-runtime libpam0g libselinux1 libstdc++6 libstdc++6-4.3-dev libvolume-id1 linux-libc-dev lsb-base python-minimal sysv-rc sysvinit-utils 27 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/26.3MB of archives. After this operation, 5136kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpam-modules base-files bash linux-libc-dev libc6-dev libgomp1 cpp-4.3 gcc-4.3-base libgcc1 gcc-4.3 g++-4.3 libstdc++6-4.3-dev libstdc++6 libgmp3c2 libc6 python2.6-minimal python-minimal libselinux1 sysvinit-utils debconf-english debconf apt libpam-runtime libpam0g libvolume-id1 lsb-base initscripts sysv-rc Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9224 files and directories currently installed.) Preparing to replace libpam-modules 1.0.1-5ubuntu1 (using .../libpam-modules_1.0.1-7ubuntu1_amd64.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.0.1-7ubuntu1) ... (Reading database ... 9224 files and directories currently installed.) Preparing to replace base-files 5ubuntu2 (using .../base-files_5ubuntu3_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (5ubuntu3) ... (Reading database ... 9224 files and directories currently installed.) Preparing to replace bash 3.2-4ubuntu1 (using .../bash_3.2-5ubuntu1_amd64.deb) ... Unpacking replacement bash ... Setting up bash (3.2-5ubuntu1) ... (Reading database ... 9224 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.28-8.24 (using .../linux-libc-dev_2.6.28-9.31_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libc6-dev 2.9-0ubuntu11 (using .../libc6-dev_2.9-4ubuntu2_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libgomp1 4.3.3-3ubuntu5 (using .../libgomp1_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.3 4.3.3-3ubuntu5 (using .../cpp-4.3_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement cpp-4.3 ... Preparing to replace gcc-4.3-base 4.3.3-3ubuntu5 (using .../gcc-4.3-base_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement gcc-4.3-base ... Setting up gcc-4.3-base (4.3.3-5ubuntu3) ... (Reading database ... 9223 files and directories currently installed.) Preparing to replace libgcc1 1:4.3.3-3ubuntu5 (using .../libgcc1_1%3a4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.3.3-5ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9223 files and directories currently installed.) Preparing to replace gcc-4.3 4.3.3-3ubuntu5 (using .../gcc-4.3_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement gcc-4.3 ... Preparing to replace g++-4.3 4.3.3-3ubuntu5 (using .../g++-4.3_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement g++-4.3 ... Preparing to replace libstdc++6-4.3-dev 4.3.3-3ubuntu5 (using .../libstdc++6-4.3-dev_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement libstdc++6-4.3-dev ... Preparing to replace libstdc++6 4.3.3-3ubuntu5 (using .../libstdc++6_4.3.3-5ubuntu3_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.3.3-5ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9223 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.2.2+dfsg-3ubuntu1 (using .../libgmp3c2_2%3a4.2.4+dfsg-2ubuntu1_amd64.deb) ... Unpacking replacement libgmp3c2 ... Preparing to replace libc6 2.9-0ubuntu11 (using .../libc6_2.9-4ubuntu2_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.9-4ubuntu2) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc6 ... ldconfig deferred processing now taking place Selecting previously deselected package python2.6-minimal. (Reading database ... 9223 files and directories currently installed.) Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.1-1ubuntu1_amd64.deb) ... Setting up python2.6-minimal (2.6.1-1ubuntu1) ... Could not find platform dependent libraries Consider setting $PYTHONHOME to [:] (Reading database ... 9380 files and directories currently installed.) Preparing to replace python-minimal 2.5.4-0ubuntu3 (using .../python-minimal_2.6.1-0ubuntu3_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.6.1-0ubuntu3) ... (Reading database ... 9380 files and directories currently installed.) Preparing to replace libselinux1 2.0.65-5 (using .../libselinux1_2.0.65-5build1_amd64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.0.65-5build1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9380 files and directories currently installed.) Preparing to replace sysvinit-utils 2.86.ds1-61ubuntu5 (using .../sysvinit-utils_2.86.ds1-61ubuntu8_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.86.ds1-61ubuntu8) ... (Reading database ... 9380 files and directories currently installed.) Preparing to replace debconf-english 1.5.24ubuntu3 (using .../debconf-english_1.5.26ubuntu1_all.deb) ... Unpacking replacement debconf-english ... Setting up debconf-english (1.5.26ubuntu1) ... (Reading database ... 9380 files and directories currently installed.) Preparing to replace debconf 1.5.24ubuntu3 (using .../debconf_1.5.26ubuntu1_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.26ubuntu1) ... (Reading database ... 9382 files and directories currently installed.) Preparing to replace apt 0.7.20.2ubuntu1 (using .../apt_0.7.20.2ubuntu2_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.7.20.2ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9382 files and directories currently installed.) Preparing to replace libpam-runtime 1.0.1-5ubuntu1 (using .../libpam-runtime_1.0.1-7ubuntu1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.0.1-7ubuntu1) ... (Reading database ... 9382 files and directories currently installed.) Preparing to replace libpam0g 1.0.1-5ubuntu1 (using .../libpam0g_1.0.1-7ubuntu1_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.0.1-7ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9382 files and directories currently installed.) Preparing to replace libvolume-id1 138-1 (using .../libvolume-id1_140-1_amd64.deb) ... Unpacking replacement libvolume-id1 ... Setting up libvolume-id1 (140-1) ... (Reading database ... 9382 files and directories currently installed.) Preparing to replace lsb-base 3.2-20ubuntu3 (using .../lsb-base_3.2-20ubuntu4_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (3.2-20ubuntu4) ... (Reading database ... 9382 files and directories currently installed.) Preparing to replace initscripts 2.86.ds1-61ubuntu5 (using .../initscripts_2.86.ds1-61ubuntu8_amd64.deb) ... Unpacking replacement initscripts ... Preparing to replace sysv-rc 2.86.ds1-61ubuntu5 (using .../sysv-rc_2.86.ds1-61ubuntu8_all.deb) ... Unpacking replacement sysv-rc ... Setting up linux-libc-dev (2.6.28-9.31) ... Setting up libc6-dev (2.9-4ubuntu2) ... Setting up libgomp1 (4.3.3-5ubuntu3) ... Setting up libgmp3c2 (2:4.2.4+dfsg-2ubuntu1) ... Setting up cpp-4.3 (4.3.3-5ubuntu3) ... Setting up gcc-4.3 (4.3.3-5ubuntu3) ... Setting up initscripts (2.86.ds1-61ubuntu8) ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Setting up sysv-rc (2.86.ds1-61ubuntu8) ... Setting up libstdc++6-4.3-dev (4.3.3-5ubuntu3) ... Setting up g++-4.3 (4.3.3-5ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '905718-2065354', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=jaunty', '--comp=main', 'openbabel_2.2.0-2ubuntu2.dsc'] Initiating build Automatic build of openbabel_2.2.0-2ubuntu2 on yellow by sbuild/amd64 1.170.5 Build started at 20090316-0912 ****************************************************************************** openbabel_2.2.0-2ubuntu2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cdbs, zlib1g-dev, libxml2-dev, python-support (>= 0.4), python-all-dev, libboost1.35-dev Checking for already installed source dependencies... debhelper: missing cdbs: missing zlib1g-dev: missing libxml2-dev: missing python-support: missing python-all-dev: missing libboost1.35-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs zlib1g-dev libxml2-dev python-support python-all-dev libboost1.35-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libboost-serialization1.35-dev libboost-serialization1.35.0 libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libicu38 libmagic1 libncursesw5 libpython2.6 libreadline5 libsqlite3-0 libssl0.9.8 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase po-debconf python python-all python-dev python2.5 python2.5-dev python2.6 python2.6-dev readline-common Suggested packages: autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make cvs gettext-doc groff libdata-dump-perl libio-socket-ssl-perl less www-browser libmail-box-perl python-doc python-tk python-profiler python2.5-doc python2.6-doc python2.6-profiler Recommended packages: curl wget lynx libboost1.35-doc libboost-date-time1.35-dev libboost-filesystem1.35-dev libboost-graph1.35-dev libboost-iostreams1.35-dev libboost-program-options1.35-dev libboost-python1.35-dev libboost-regex1.35-dev libboost-signals1.35-dev libboost-test1.35-dev libboost-thread1.35-dev libboost-wave1.35-dev libglib2.0-data shared-mime-info libgpm2 libmailtools-perl libhtml-format-perl libcompress-zlib-perl xml-core ifupdown libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libboost-serialization1.35-dev libboost-serialization1.35.0 libboost1.35-dev libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libicu38 libmagic1 libncursesw5 libpython2.6 libreadline5 libsqlite3-0 libssl0.9.8 liburi-perl libwww-perl libxml-parser-perl libxml2 libxml2-dev m4 man-db mime-support netbase po-debconf python python-all python-all-dev python-dev python-support python2.5 python2.5-dev python2.6 python2.6-dev readline-common zlib1g-dev 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 10.6MB/37.9MB of archives. After this operation, 154MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file libncursesw5 readline-common libreadline5 libsqlite3-0 libssl0.9.8 mime-support netbase python2.6 python bsdmainutils gettext-base groff-base libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db python-support m4 autoconf autotools-dev automake html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs libicu38 libboost1.35-dev libboost-serialization1.35.0 libboost-serialization1.35-dev libpython2.6 zlib1g-dev libxml2-dev python2.5 python-all python2.6-dev python-dev python2.5-dev python-all-dev Authentication warning overridden. Get:1 http://ftpmaster.internal jaunty/main libicu38 3.8.1-3 [5935kB] Get:2 http://ftpmaster.internal jaunty/main libboost1.35-dev 1.35.0-8ubuntu5 [3366kB] Get:3 http://ftpmaster.internal jaunty/main libboost-serialization1.35.0 1.35.0-8ubuntu5 [499kB] Get:4 http://ftpmaster.internal jaunty/main libboost-serialization1.35-dev 1.35.0-8ubuntu5 [766kB] dpkg-preconfigure: unable to re-open stdin: Fetched 10.6MB in 2s (4620kB/s) Selecting previously deselected package libmagic1. (Reading database ... 9382 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_4.26-2ubuntu2_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_4.26-2ubuntu2_amd64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090207-1ubuntu1_amd64.deb) ... Selecting previously deselected package readline-common. Unpacking readline-common (from .../readline-common_5.2-4_all.deb) ... Selecting previously deselected package libreadline5. Unpacking libreadline5 (from .../libreadline5_5.2-4_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.10-1_amd64.deb) ... Selecting previously deselected package libssl0.9.8. Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8g-15ubuntu1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.44-1_all.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.34ubuntu2_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.1-1ubuntu1_amd64.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.1-0ubuntu3_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu3_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-4_amd64.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.37+dfsg-1ubuntu1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.59-1ubuntu1_amd64.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.820-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build2_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.6.32.dfsg-5ubuntu3_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.4-2_amd64.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_0.8.7ubuntu2_all.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.11-1_amd64.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.63-2ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20080123.2_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.10.2-0ubuntu1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-5_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.19.10-1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.15ubuntu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.0.17ubuntu4_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-1_amd64.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.40.5-1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.52ubuntu15_all.deb) ... Selecting previously deselected package libicu38. Unpacking libicu38 (from .../libicu38_3.8.1-3_amd64.deb) ... Selecting previously deselected package libboost1.35-dev. Unpacking libboost1.35-dev (from .../libboost1.35-dev_1.35.0-8ubuntu5_amd64.deb) ... Selecting previously deselected package libboost-serialization1.35.0. Unpacking libboost-serialization1.35.0 (from .../libboost-serialization1.35.0_1.35.0-8ubuntu5_amd64.deb) ... Selecting previously deselected package libboost-serialization1.35-dev. Unpacking libboost-serialization1.35-dev (from .../libboost-serialization1.35-dev_1.35.0-8ubuntu5_amd64.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.1-1ubuntu1_amd64.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.3.dfsg-12ubuntu1_amd64.deb) ... Selecting previously deselected package libxml2-dev. Unpacking libxml2-dev (from .../libxml2-dev_2.6.32.dfsg-5ubuntu3_amd64.deb) ... Selecting previously deselected package python2.5. Unpacking python2.5 (from .../python2.5_2.5.4-1ubuntu2_amd64.deb) ... Selecting previously deselected package python-all. Unpacking python-all (from .../python-all_2.6.1-0ubuntu3_all.deb) ... Selecting previously deselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.1-1ubuntu1_amd64.deb) ... Selecting previously deselected package python-dev. Unpacking python-dev (from .../python-dev_2.6.1-0ubuntu3_all.deb) ... Selecting previously deselected package python2.5-dev. Unpacking python2.5-dev (from .../python2.5-dev_2.5.4-1ubuntu2_amd64.deb) ... Selecting previously deselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.6.1-0ubuntu3_all.deb) ... Setting up libmagic1 (4.26-2ubuntu2) ... Setting up file (4.26-2ubuntu2) ... Setting up libncursesw5 (5.7+20090207-1ubuntu1) ... Setting up readline-common (5.2-4) ... Setting up libreadline5 (5.2-4) ... Setting up libsqlite3-0 (3.6.10-1) ... Setting up libssl0.9.8 (0.9.8g-15ubuntu1) ... Setting up mime-support (3.44-1) ... Setting up netbase (4.34ubuntu2) ... Setting up python2.6 (2.6.1-1ubuntu1) ... Setting up python (2.6.1-0ubuntu3) ... Setting up bsdmainutils (6.1.10ubuntu3) ... Setting up gettext-base (0.17-6ubuntu2) ... Setting up groff-base (1.18.1.1-22) ... Setting up libexpat1 (2.0.1-4) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.37+dfsg-1ubuntu1) ... Setting up libhtml-parser-perl (3.59-1ubuntu1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.820-1) ... Setting up libxml-parser-perl (2.36-1.1build2) ... Setting up libxml2 (2.6.32.dfsg-5ubuntu3) ... Setting up man-db (2.5.4-2) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up python-support (0.8.7ubuntu2) ... Setting up m4 (1.4.11-1) ... Setting up autoconf (2.63-2ubuntu1) ... Setting up autotools-dev (20080123.2) ... Setting up automake (1:1.10.2-0ubuntu1) ... Setting up html2text (1.3.2a-5) ... Setting up libglib2.0-0 (2.19.10-1) ... Setting up libcroco3 (0.6.1-2) ... Setting up gettext (0.17-6ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.15ubuntu1) ... Setting up debhelper (7.0.17ubuntu4) ... Setting up fdupes (1.50-PR2-1) ... Setting up intltool (0.40.5-1) ... Setting up cdbs (0.4.52ubuntu15) ... Setting up libicu38 (3.8.1-3) ... Setting up libboost-serialization1.35.0 (1.35.0-8ubuntu5) ... Setting up libpython2.6 (2.6.1-1ubuntu1) ... Setting up zlib1g-dev (1:1.2.3.3.dfsg-12ubuntu1) ... Setting up libxml2-dev (2.6.32.dfsg-5ubuntu3) ... Setting up python2.5 (2.5.4-1ubuntu2) ... Setting up python-all (2.6.1-0ubuntu3) ... Setting up python2.6-dev (2.6.1-1ubuntu1) ... Setting up python-dev (2.6.1-0ubuntu3) ... Setting up python2.5-dev (2.5.4-1ubuntu2) ... Setting up python-all-dev (2.6.1-0ubuntu3) ... Setting up libboost-serialization1.35-dev (1.35.0-8ubuntu5) ... Setting up libboost1.35-dev (1.35.0-8ubuntu5) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-4ubuntu2 make_3.81-5 dpkg-dev_1.14.24ubuntu1 g++-4.3_4.3.3-5ubuntu3 gcc-4.3_4.3.3-5ubuntu3 binutils_2.19.1-0ubuntu3 libstdc++6_4.3.3-5ubuntu3 libstdc++6-4.3-dev_4.3.3-5ubuntu3 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Mon Mar 16 08:50:53 2009 GMT using DSA key ID 5E0577F2 gpg: Can't check signature: public key not found dpkg-source: extracting openbabel in openbabel-2.2.0 dpkg-source: unpacking openbabel_2.2.0.orig.tar.gz dpkg-source: applying /home/buildd/build-905718-2065354/openbabel_2.2.0-2ubuntu2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package openbabel dpkg-buildpackage: source version 2.2.0-2ubuntu2 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules test "`id -u`" = 0 for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/openbabel-2.2.0' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-build rm -f debian/stamp-makefile-check rm -f debian/stamp-autotools-files dh_clean /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/openbabel-2.2.0' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: debian/patches/gauss_cube_format.patch Patch debian/patches/gauss_cube_format.patch is not applied. if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done cd scripts/python; python setup.py clean WARNING: Environment variable OPENBABEL_INSTALL is not set INFO: Looking for library and include files in ../../src and ../../include ERROR: Cannot find Open Babel include or library directory running clean rm -rf scripts/python/build debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/openbabel-2.2.0' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: debian/patches/gauss_cube_format.patch Trying patch debian/patches/gauss_cube_format.patch at level 1 ... 0 ... success. if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/build/buildd/openbabel-2.2.0' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/openbabel-2.2.0/./configure cd . && CC="cc" CXX="g++" CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/openbabel-2.2.0/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/openbabel" --disable-maintainer-mode --disable-dependency-tracking --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking auto silent in maintainer mode... auto-sleep-9 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for style of include used by make... 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creating src/formats/Makefile config.status: creating src/fingerprints/Makefile config.status: creating src/formats/xml/Makefile config.status: creating src/formats/inchi/Makefile config.status: creating src/forcefields/Makefile config.status: creating src/GUI/Makefile config.status: creating src/descriptors/Makefile config.status: creating src/ops/Makefile config.status: creating include/Makefile config.status: creating include/openbabel/Makefile config.status: creating include/openbabel/math/Makefile config.status: creating test/Makefile config.status: creating test/cmltest/Makefile config.status: creating tools/Makefile config.status: creating doc/Makefile config.status: creating scripts/Makefile config.status: creating openbabel-2.0.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/openbabel/babelconfig.h commands /usr/bin/make -C . make[1]: Entering directory `/build/buildd/openbabel-2.2.0' Making all in data make[2]: Entering directory `/build/buildd/openbabel-2.2.0/data' /usr/bin/make all-am make[3]: Entering directory `/build/buildd/openbabel-2.2.0/data' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/data' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/data' Making all in src make[2]: Entering directory `/build/buildd/openbabel-2.2.0/src' /usr/bin/make all-recursive make[3]: Entering directory `/build/buildd/openbabel-2.2.0/src' Making all in math make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/math' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o matrix3x3.lo matrix3x3.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c matrix3x3.cpp -fPIC -DPIC -o .libs/matrix3x3.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o vector3.lo vector3.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c vector3.cpp -fPIC -DPIC -o .libs/vector3.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o transform3d.lo transform3d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c transform3d.cpp -fPIC -DPIC -o .libs/transform3d.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o spacegroup.lo spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c spacegroup.cpp -fPIC -DPIC -o .libs/spacegroup.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libmath.la matrix3x3.lo vector3.lo transform3d.lo spacegroup.lo -lz -lm libtool: link: ar cru .libs/libmath.a .libs/matrix3x3.o .libs/vector3.o .libs/transform3d.o .libs/spacegroup.o libtool: link: ranlib .libs/libmath.a libtool: link: ( cd ".libs" && rm -f "libmath.la" && ln -s "../libmath.la" "libmath.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/math' Making all in fingerprints make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/fingerprints' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o finger2.lo finger2.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c finger2.cpp -fPIC -DPIC -o .libs/finger2.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o finger3.lo finger3.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c finger3.cpp -fPIC -DPIC -o .libs/finger3.o finger3.cpp: In member function 'virtual std::string OpenBabel::PatternFP::DescribeBits(std::vector >, bool)': finger3.cpp:164: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libfingerprints.la finger2.lo finger3.lo -lz -lm libtool: link: ar cru .libs/libfingerprints.a .libs/finger2.o .libs/finger3.o libtool: link: ranlib .libs/libfingerprints.a libtool: link: ( cd ".libs" && rm -f "libfingerprints.la" && ln -s "../libfingerprints.la" "libfingerprints.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/fingerprints' Making all in forcefields make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/forcefields' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c -o forcefieldghemical.lo forcefieldghemical.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c forcefieldghemical.cpp -fPIC -DPIC -o .libs/forcefieldghemical.o forcefieldghemical.cpp: In member function 'OpenBabel::OBFFParameter* OpenBabel::OBForceFieldGhemical::GetParameterGhemical(int, const char*, const char*, const char*, const char*, std::vector >&)': forcefieldghemical.cpp:1118: warning: suggest parentheses around && within || /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c -o forcefieldmmff94.lo forcefieldmmff94.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c forcefieldmmff94.cpp -fPIC -DPIC -o .libs/forcefieldmmff94.o forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()': forcefieldmmff94.cpp:3208: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetFormalCharges()': forcefieldmmff94.cpp:3658: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:3666: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetPartialCharges()': forcefieldmmff94.cpp:3805: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp: In member function 'int OpenBabel::OBForceFieldMMFF94::GetStrBndType(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)': forcefieldmmff94.cpp:4402: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:4407: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:4423: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:4428: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:4438: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp:4443: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::GetRuleBondLength(OpenBabel::OBAtom*, OpenBabel::OBAtom*)': forcefieldmmff94.cpp:4883: warning: suggest explicit braces to avoid ambiguous 'else' forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = true]': forcefieldmmff94.h:283: instantiated from here forcefieldmmff94.cpp:140: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Bond() [with bool = false]': forcefieldmmff94.h:283: instantiated from here forcefieldmmff94.cpp:140: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = true]': forcefieldmmff94.h:289: instantiated from here forcefieldmmff94.cpp:255: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Angle() [with bool = false]': forcefieldmmff94.h:289: instantiated from here forcefieldmmff94.cpp:255: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = true]': forcefieldmmff94.h:295: instantiated from here forcefieldmmff94.cpp:368: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_StrBnd() [with bool = false]': forcefieldmmff94.h:295: instantiated from here forcefieldmmff94.cpp:368: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = true]': forcefieldmmff94.h:301: instantiated from here forcefieldmmff94.cpp:504: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Torsion() [with bool = false]': forcefieldmmff94.h:301: instantiated from here forcefieldmmff94.cpp:504: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = true]': forcefieldmmff94.h:307: instantiated from here forcefieldmmff94.cpp:602: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_OOP() [with bool = false]': forcefieldmmff94.h:307: instantiated from here forcefieldmmff94.cpp:602: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = true]': forcefieldmmff94.h:313: instantiated from here forcefieldmmff94.cpp:699: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_VDW() [with bool = false]': forcefieldmmff94.h:313: instantiated from here forcefieldmmff94.cpp:699: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = true]': forcefieldmmff94.h:319: instantiated from here forcefieldmmff94.cpp:785: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'double OpenBabel::OBForceFieldMMFF94::E_Electrostatic() [with bool = false]': forcefieldmmff94.h:319: instantiated from here forcefieldmmff94.cpp:785: warning: comparison between signed and unsigned integer expressions forcefieldmmff94.cpp: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()': forcefieldmmff94.cpp:3858: warning: 'eeq' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'evdw' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'etor' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'estbn' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'eoop' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'eangle' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'ebond' may be used uninitialized in this function forcefieldmmff94.cpp:3858: warning: 'etot' may be used uninitialized in this function In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4061: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4064: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4094: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4096: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4126: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4128: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4157: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4161: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4165: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4169: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4173: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4177: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4181: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::OBForceFieldMMFF94::Validate()' at forcefieldmmff94.cpp:4186: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c -o forcefielduff.lo forcefielduff.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../include -g -O2 -g -Wall -O2 -c forcefielduff.cpp -fPIC -DPIC -o .libs/forcefielduff.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libforcefields.la forcefieldghemical.lo forcefieldmmff94.lo forcefielduff.lo -lz -lm libtool: link: ar cru .libs/libforcefields.a .libs/forcefieldghemical.o .libs/forcefieldmmff94.o .libs/forcefielduff.o libtool: link: ranlib .libs/libforcefields.a libtool: link: ( cd ".libs" && rm -f "libforcefields.la" && ln -s "../libforcefields.la" "libforcefields.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/forcefields' Making all in descriptors make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/descriptors' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o cmpdfilter.lo cmpdfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c cmpdfilter.cpp -fPIC -DPIC -o .libs/cmpdfilter.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o filters.lo filters.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c filters.cpp -fPIC -DPIC -o .libs/filters.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o groupcontrib.lo groupcontrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c groupcontrib.cpp -fPIC -DPIC -o .libs/groupcontrib.o groupcontrib.cpp: In member function 'virtual double OpenBabel::OBGroupContrib::Predict(OpenBabel::OBBase*)': groupcontrib.cpp:160: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o smartsdescriptors.lo smartsdescriptors.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c smartsdescriptors.cpp -fPIC -DPIC -o .libs/smartsdescriptors.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libdescriptors.la cmpdfilter.lo filters.lo groupcontrib.lo smartsdescriptors.lo -lz -lm libtool: link: ar cru .libs/libdescriptors.a .libs/cmpdfilter.o .libs/filters.o .libs/groupcontrib.o .libs/smartsdescriptors.o libtool: link: ranlib .libs/libdescriptors.a libtool: link: ( cd ".libs" && rm -f "libdescriptors.la" && ln -s "../libdescriptors.la" "libdescriptors.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/descriptors' Making all in ops make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/ops' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o addpolarh.lo addpolarh.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c addpolarh.cpp -fPIC -DPIC -o .libs/addpolarh.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o gen3d.lo gen3d.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c gen3d.cpp -fPIC -DPIC -o .libs/gen3d.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o loader.lo loader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c loader.cpp -fPIC -DPIC -o .libs/loader.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c -o optransform.lo optransform.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../src -I../../include -g -O2 -g -Wall -O2 -c optransform.cpp -fPIC -DPIC -o .libs/optransform.o optransform.cpp: In member function 'bool OpenBabel::OpTransform::Initialize()': optransform.cpp:64: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libops.la addpolarh.lo gen3d.lo loader.lo optransform.lo -lz -lm libtool: link: ar cru .libs/libops.a .libs/addpolarh.o .libs/gen3d.o .libs/loader.o .libs/optransform.o libtool: link: ranlib .libs/libops.a libtool: link: ( cd ".libs" && rm -f "libops.la" && ln -s "../libops.la" "libops.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/ops' Making all in . make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o atom.lo atom.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c atom.cpp -fPIC -DPIC -o .libs/atom.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o alias.lo alias.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c alias.cpp -fPIC -DPIC -o .libs/alias.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o base.lo base.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c base.cpp -fPIC -DPIC -o .libs/base.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o bitvec.lo bitvec.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c bitvec.cpp -fPIC -DPIC -o .libs/bitvec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o bond.lo bond.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c bond.cpp -fPIC -DPIC -o .libs/bond.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o bondtyper.lo bondtyper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c bondtyper.cpp -fPIC -DPIC -o .libs/bondtyper.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o canon.lo canon.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c canon.cpp -fPIC -DPIC -o .libs/canon.o canon.cpp: In function 'int OpenBabel::ExtendInvarients(std::vector, std::allocator > >&, OpenBabel::OBBitVec&, int, int)': canon.cpp:517: warning: comparison between signed and unsigned integer expressions canon.cpp: In function 'void OpenBabel::BreakChiralTies(OpenBabel::OBMol*, OpenBabel::OBBitVec&, int, std::vector, std::allocator > >&)': canon.cpp:661: warning: comparison between signed and unsigned integer expressions canon.cpp:725: warning: comparison between signed and unsigned integer expressions canon.cpp:754: warning: comparison between signed and unsigned integer expressions canon.cpp:756: warning: comparison between signed and unsigned integer expressions canon.cpp: In function 'void OpenBabel::FixCisTransBonds(OpenBabel::OBMol*, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)': canon.cpp:936: warning: comparison between signed and unsigned integer expressions canon.cpp:954: warning: comparison between signed and unsigned integer expressions canon.cpp: In function 'void OpenBabel::CanonicalLabels(OpenBabel::OBMol*, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)': canon.cpp:1117: warning: comparison between signed and unsigned integer expressions canon.cpp:1122: warning: comparison between signed and unsigned integer expressions canon.cpp:1124: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o builder.lo builder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c builder.cpp -fPIC -DPIC -o .libs/builder.o builder.cpp:148:5: warning: multi-line comment builder.cpp:150:5: warning: multi-line comment builder.cpp:157:5: warning: multi-line comment builder.cpp:159:5: warning: multi-line comment builder.cpp:207:5: warning: multi-line comment builder.cpp:240:5: warning: multi-line comment builder.cpp:711:9: warning: multi-line comment In file included from ../include/openbabel/rotamer.h:27, from builder.cpp:29: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions builder.cpp: In static member function 'static bool OpenBabel::OBBuilder::Swap(OpenBabel::OBMol&, int, int, int, int)': builder.cpp:424: warning: unused variable 'bondOrder1' builder.cpp: In static member function 'static void OpenBabel::OBBuilder::CorrectStereoBonds(OpenBabel::OBMol&)': builder.cpp:651: warning: comparison between signed and unsigned integer expressions builder.cpp:672: warning: comparison between signed and unsigned integer expressions builder.cpp:678: warning: 'angle' may be used uninitialized in this function /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o chains.lo chains.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c chains.cpp -fPIC -DPIC -o .libs/chains.o chains.cpp: In member function 'void OpenBabel::OBChainsParser::ConstrainBackbone(OpenBabel::OBMol&, OpenBabel::Template*, int)': chains.cpp:1213: warning: comparison between signed and unsigned integer expressions chains.cpp:1239: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o chiral.lo chiral.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c chiral.cpp -fPIC -DPIC -o .libs/chiral.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o data.lo data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c data.cpp -fPIC -DPIC -o .libs/data.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o descriptor.lo descriptor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c descriptor.cpp -fPIC -DPIC -o .libs/descriptor.o descriptor.cpp: In static member function 'static bool OpenBabel::OBDescriptor::ReadStringFromFilter(std::istream&, std::string&)': descriptor.cpp:259: warning: unused variable 'error' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o fingerprint.lo fingerprint.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c fingerprint.cpp -fPIC -DPIC -o .libs/fingerprint.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o forcefield.lo forcefield.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c forcefield.cpp -fPIC -DPIC -o .libs/forcefield.o In file included from ../include/openbabel/rotamer.h:27, from forcefield.cpp:72: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintType(int) const': forcefield.cpp:697: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'double OpenBabel::OBFFConstraints::GetConstraintValue(int) const': forcefield.cpp:705: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomA(int) const': forcefield.cpp:713: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomB(int) const': forcefield.cpp:721: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomC(int) const': forcefield.cpp:729: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'int OpenBabel::OBFFConstraints::GetConstraintAtomD(int) const': forcefield.cpp:737: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'void OpenBabel::OBForceField::RandomRotorSearchInitialize(unsigned int, unsigned int)': forcefield.cpp:1334: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In function 'void OpenBabel::Reweight(std::vector >, std::allocator > > >&, std::vector >, double)': forcefield.cpp:1410: warning: comparison between signed and unsigned integer expressions forcefield.cpp:1421: warning: comparison between signed and unsigned integer expressions forcefield.cpp:1440: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int)': forcefield.cpp:1587: warning: comparison between signed and unsigned integer expressions forcefield.cpp:1653: warning: comparison between signed and unsigned integer expressions forcefield.cpp:1656: warning: comparison between signed and unsigned integer expressions forcefield.cpp:1518: warning: unused variable 'confCount' forcefield.cpp: In member function 'double OpenBabel::OBForceField::LineSearch(double*, double*)': forcefield.cpp:2294: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'bool OpenBabel::OBForceField::SteepestDescentTakeNSteps(int)': forcefield.cpp:2544: warning: comparison between signed and unsigned integer expressions forcefield.cpp:2544: warning: comparison between signed and unsigned integer expressions forcefield.cpp:2533: warning: unused variable '_ncoords' forcefield.cpp: In member function 'void OpenBabel::OBForceField::ConjugateGradientsInitialize(int, double, int)': forcefield.cpp:2652: warning: comparison between signed and unsigned integer expressions forcefield.cpp:2652: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'bool OpenBabel::OBForceField::ConjugateGradientsTakeNSteps(int)': forcefield.cpp:2722: warning: comparison between signed and unsigned integer expressions forcefield.cpp:2722: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'void OpenBabel::OBForceField::GenerateVelocities()': forcefield.cpp:3170: warning: comparison between signed and unsigned integer expressions forcefield.cpp:3170: warning: comparison between signed and unsigned integer expressions forcefield.cpp: In member function 'void OpenBabel::OBForceField::MolecularDynamicsTakeNSteps(int, double, double, int)': forcefield.cpp:3272: warning: comparison between signed and unsigned integer expressions forcefield.cpp:3272: warning: comparison between signed and unsigned integer expressions forcefield.cpp:3259: warning: unused variable 'kB' In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::DistanceGeometry()' at forcefield.cpp:1897: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::DistanceGeometry()' at forcefield.cpp:1921: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::ValidateSteepestDescent(int)' at forcefield.cpp:2413: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::ValidateSteepestDescent(int)' at forcefield.cpp:2426: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::ValidateConjugateGradients(int)' at forcefield.cpp:2458: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::ValidateConjugateGradients(int)' at forcefield.cpp:2473: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OBForceField::ValidateConjugateGradients(int)' at forcefield.cpp:2493: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)' at forcefield.cpp:1369: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)' at forcefield.cpp:1390: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)' at forcefield.cpp:1254: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)' at forcefield.cpp:1275: /usr/include/bits/stdio2.h:66: warning: call to int __builtin___snprintf_chk(char*, long unsigned int, int, long unsigned int, const char*, ...) will always overflow destination buffer /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o format.lo format.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c format.cpp -fPIC -DPIC -o .libs/format.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o generic.lo generic.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c generic.cpp -fPIC -DPIC -o .libs/generic.o ../include/openbabel/generic.h: In copy constructor 'OpenBabel::OBSymmetryData::OBSymmetryData(const OpenBabel::OBSymmetryData&)': ../include/openbabel/generic.h:458: warning: 'OpenBabel::OBSymmetryData::_pointGroup' will be initialized after ../include/openbabel/generic.h:457: warning: 'std::string OpenBabel::OBSymmetryData::_spaceGroup' generic.cpp:640: warning: when initialized here /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o griddata.lo griddata.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c griddata.cpp -fPIC -DPIC -o .libs/griddata.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o grid.lo grid.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c grid.cpp -fPIC -DPIC -o .libs/grid.o grid.cpp: In member function 'void OpenBabel::OBFloatGrid::SetVals(const std::vector >&)': grid.cpp:258: warning: unused variable 'size' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o locale.lo locale.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c locale.cpp -fPIC -DPIC -o .libs/locale.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o kekulize.lo kekulize.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c kekulize.cpp -fPIC -DPIC -o .libs/kekulize.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o matrix.lo matrix.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c matrix.cpp -fPIC -DPIC -o .libs/matrix.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o mol.lo mol.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c mol.cpp -fPIC -DPIC -o .libs/mol.o In file included from ../include/openbabel/rotamer.h:27, from mol.cpp:23: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'OpenBabel::OBAtom* OpenBabel::OBMol::NewAtom()': mol.cpp:1484: warning: comparison between signed and unsigned integer expressions mol.cpp:1506: warning: comparison between signed and unsigned integer expressions mol.cpp:1506: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'OpenBabel::OBBond* OpenBabel::OBMol::NewBond()': mol.cpp:1544: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'bool OpenBabel::OBMol::AddAtom(OpenBabel::OBAtom&)': mol.cpp:1574: warning: comparison between signed and unsigned integer expressions mol.cpp:1596: warning: comparison between signed and unsigned integer expressions mol.cpp:1596: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'bool OpenBabel::OBMol::StripSalts(int)': mol.cpp:1661: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'bool OpenBabel::OBMol::AddBond(int, int, int, int, int)': mol.cpp:2709: warning: comparison between signed and unsigned integer expressions mol.cpp: In member function 'void OpenBabel::OBMol::PerceiveBondOrders()': mol.cpp:3514: warning: suggest parentheses around && within || mol.cpp: In member function 'void OpenBabel::OBMol::SetConformer(int)': mol.cpp:3729: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o molchrg.lo molchrg.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c molchrg.cpp -fPIC -DPIC -o .libs/molchrg.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o obconversion.lo obconversion.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c obconversion.cpp -fPIC -DPIC -o .libs/obconversion.o ../include/openbabel/obconversion.h: In constructor 'OpenBabel::OBConversion::OBConversion(std::istream*, std::ostream*)': ../include/openbabel/obconversion.h:329: warning: 'OpenBabel::OBConversion::pAuxConv' will be initialized after ../include/openbabel/obconversion.h:320: warning: 'OpenBabel::FilteringInputStreambuf* OpenBabel::OBConversion::pLineEndBuf' obconversion.cpp:201: warning: when initialized here obconversion.cpp: In static member function 'static bool OpenBabel::OBConversion::CheckForUnintendedBatch(const std::string&, const std::string&)': obconversion.cpp:1030: warning: unused variable 'ret' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o oberror.lo oberror.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c oberror.cpp -fPIC -DPIC -o .libs/oberror.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o obiter.lo obiter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c obiter.cpp -fPIC -DPIC -o .libs/obiter.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o obmolecformat.lo obmolecformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c obmolecformat.cpp -fPIC -DPIC -o .libs/obmolecformat.o obmolecformat.cpp: In static member function 'static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)': obmolecformat.cpp:61: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o obutil.lo obutil.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c obutil.cpp -fPIC -DPIC -o .libs/obutil.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o ops.lo ops.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c ops.cpp -fPIC -DPIC -o .libs/ops.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o parsmart.lo parsmart.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c parsmart.cpp -fPIC -DPIC -o .libs/parsmart.o parsmart.cpp: In function 'bool OpenBabel::match(OpenBabel::OBMol&, OpenBabel::Pattern*, std::vector >, std::allocator > > >&, bool)': parsmart.cpp:2768: warning: suggest explicit braces to avoid ambiguous 'else' parsmart.cpp:2777: warning: suggest explicit braces to avoid ambiguous 'else' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o patty.lo patty.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c patty.cpp -fPIC -DPIC -o .libs/patty.o patty.cpp: In member function 'int OpenBabel::patty::type_to_int(const std::string&, bool)': patty.cpp:233: warning: 'result' may be used uninitialized in this function /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o phmodel.lo phmodel.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c phmodel.cpp -fPIC -DPIC -o .libs/phmodel.o phmodel.cpp: In member function 'bool OpenBabel::OBChemTsfm::IsAcid()': phmodel.cpp:380: warning: comparison between signed and unsigned integer expressions phmodel.cpp: In member function 'bool OpenBabel::OBChemTsfm::IsBase()': phmodel.cpp:395: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o plugin.lo plugin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c plugin.cpp -fPIC -DPIC -o .libs/plugin.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o pointgroup.lo pointgroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c pointgroup.cpp -fPIC -DPIC -o .libs/pointgroup.o pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::establish_pairs(OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*)': pointgroup.cpp:256: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:257: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:264: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_order(OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*)': pointgroup.cpp:298: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::same_transform(OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*, OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*)': pointgroup.cpp:337: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:344: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_* OpenBabel::PointGroupPrivate::alloc_symmetry_element()': pointgroup.cpp:369: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'int OpenBabel::PointGroupPrivate::check_transform_quality(OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*)': pointgroup.cpp:392: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'double OpenBabel::PointGroupPrivate::eval_optimization_target_function(OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_*, int*)': pointgroup.cpp:446: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_* OpenBabel::PointGroupPrivate::init_ultimate_plane()': pointgroup.cpp:736: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:785: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_* OpenBabel::PointGroupPrivate::init_ultimate_axis()': pointgroup.cpp:907: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:942: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'OpenBabel::PointGroupPrivate::_SYMMETRY_ELEMENT_* OpenBabel::PointGroupPrivate::init_axis_parameters(double*, double*, double*)': pointgroup.cpp:1120: warning: suggest explicit braces to avoid ambiguous 'else' pointgroup.cpp:1117: warning: suggest explicit braces to avoid ambiguous 'else' pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_center_of_something()': pointgroup.cpp:1291: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1305: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_planes()': pointgroup.cpp:1332: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_c2_axes()': pointgroup.cpp:1391: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1425: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1439: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1445: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1447: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_higher_axes()': pointgroup.cpp:1481: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1482: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1487: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'void OpenBabel::PointGroupPrivate::find_improper_axes()': pointgroup.cpp:1513: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1514: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1515: warning: comparison between signed and unsigned integer expressions pointgroup.cpp: In member function 'const char* OpenBabel::PointGroupPrivate::identify_point_group()': pointgroup.cpp:1769: warning: comparison between signed and unsigned integer expressions pointgroup.cpp:1782: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o rand.lo rand.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c rand.cpp -fPIC -DPIC -o .libs/rand.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o residue.lo residue.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c residue.cpp -fPIC -DPIC -o .libs/residue.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o ring.lo ring.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c ring.cpp -fPIC -DPIC -o .libs/ring.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o rotor.lo rotor.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c rotor.cpp -fPIC -DPIC -o .libs/rotor.o In file included from rotor.cpp:23: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o rotamer.lo rotamer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c rotamer.cpp -fPIC -DPIC -o .libs/rotamer.o In file included from ../include/openbabel/rotamer.h:27, from rotamer.cpp:21: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o tokenst.lo tokenst.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c tokenst.cpp -fPIC -DPIC -o .libs/tokenst.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o typer.lo typer.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c typer.cpp -fPIC -DPIC -o .libs/typer.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o transform.lo transform.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c transform.cpp -fPIC -DPIC -o .libs/transform.o transform.cpp: In member function 'virtual OpenBabel::OBBase* OpenBabel::OBMol::DoTransformations(const std::map, std::allocator >, std::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator >, std::basic_string, std::allocator > > > >*)': transform.cpp:178: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c -o dlhandler_unix.lo dlhandler_unix.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../include -I../data/ -I../include -DOB_MODULE_PATH=\"/usr/lib/openbabel/2.2.0\" -DUSING_DYNAMIC_LIBS -g -O2 -g -Wall -O2 -c dlhandler_unix.cpp -fPIC -DPIC -o .libs/dlhandler_unix.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -version-info 3:0:0 -no-undefined -Wl,-Bsymbolic-functions -o libopenbabel.la -rpath /usr/lib atom.lo alias.lo base.lo bitvec.lo bond.lo bondtyper.lo canon.lo builder.lo chains.lo chiral.lo data.lo descriptor.lo fingerprint.lo forcefield.lo format.lo generic.lo griddata.lo grid.lo locale.lo kekulize.lo matrix.lo mol.lo molchrg.lo obconversion.lo oberror.lo obiter.lo obmolecformat.lo obutil.lo ops.lo parsmart.lo patty.lo phmodel.lo plugin.lo pointgroup.lo rand.lo residue.lo ring.lo rotor.lo rotamer.lo tokenst.lo typer.lo transform.lo dlhandler_unix.lo math/libmath.la fingerprints/libfingerprints.la forcefields/libforcefields.la ops/libops.la descriptors/libdescriptors.la -ldl -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/atom.o .libs/alias.o .libs/base.o .libs/bitvec.o .libs/bond.o .libs/bondtyper.o .libs/canon.o .libs/builder.o .libs/chains.o .libs/chiral.o .libs/data.o .libs/descriptor.o .libs/fingerprint.o .libs/forcefield.o .libs/format.o .libs/generic.o .libs/griddata.o .libs/grid.o .libs/locale.o .libs/kekulize.o .libs/matrix.o .libs/mol.o .libs/molchrg.o .libs/obconversion.o .libs/oberror.o .libs/obiter.o .libs/obmolecformat.o .libs/obutil.o .libs/ops.o .libs/parsmart.o .libs/patty.o .libs/phmodel.o .libs/plugin.o .libs/pointgroup.o .libs/rand.o .libs/residue.o .libs/ring.o .libs/rotor.o .libs/rotamer.o .libs/tokenst.o .libs/typer.o .libs/transform.o .libs/dlhandler_unix.o -Wl,--whole-archive math/.libs/libmath.a fingerprints/.libs/libfingerprints.a forcefields/.libs/libforcefields.a ops/.libs/libops.a descriptors/.libs/libdescriptors.a -Wl,--no-whole-archive -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,libopenbabel.so.3 -o .libs/libopenbabel.so.3.0.0 libtool: link: (cd ".libs" && rm -f "libopenbabel.so.3" && ln -s "libopenbabel.so.3.0.0" "libopenbabel.so.3") libtool: link: (cd ".libs" && rm -f "libopenbabel.so" && ln -s "libopenbabel.so.3.0.0" "libopenbabel.so") libtool: link: ( cd ".libs" && rm -f "libopenbabel.la" && ln -s "../libopenbabel.la" "libopenbabel.la" ) make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src' Making all in formats make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' /usr/bin/make all-recursive make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' Making all in xml make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/xml' /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o pubchem.lo pubchem.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c pubchem.cpp -fPIC -DPIC -o .libs/pubchem.o /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o xml.lo xml.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c xml.cpp -fPIC -DPIC -o .libs/xml.o /bin/bash ../../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o pubchem.la -rpath /usr/lib/openbabel/2.2.0 pubchem.lo xml.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pubchem.o .libs/xml.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs /usr/lib/libxml2.so ../../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pubchem.so -o .libs/pubchem.so libtool: link: ( cd ".libs" && rm -f "pubchem.la" && ln -s "../pubchem.la" "pubchem.la" ) /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o xmlformat.lo xmlformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c xmlformat.cpp -fPIC -DPIC -o .libs/xmlformat.o /bin/bash ../../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o xmlformat.la -rpath /usr/lib/openbabel/2.2.0 xmlformat.lo xml.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xmlformat.o .libs/xml.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs /usr/lib/libxml2.so ../../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xmlformat.so -o .libs/xmlformat.so libtool: link: ( cd ".libs" && rm -f "xmlformat.la" && ln -s "../xmlformat.la" "xmlformat.la" ) /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o cdxmlformat.lo cdxmlformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c cdxmlformat.cpp -fPIC -DPIC -o .libs/cdxmlformat.o /bin/bash ../../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cdxmlformat.la -rpath /usr/lib/openbabel/2.2.0 cdxmlformat.lo xml.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cdxmlformat.o .libs/xml.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs /usr/lib/libxml2.so ../../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cdxmlformat.so -o .libs/cdxmlformat.so libtool: link: ( cd ".libs" && rm -f "cdxmlformat.la" && ln -s "../cdxmlformat.la" "cdxmlformat.la" ) /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o cmlformat.lo cmlformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c cmlformat.cpp -fPIC -DPIC -o .libs/cmlformat.o cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::DoAtoms()': cmlformat.cpp:524: warning: suggest parentheses around && within || cmlformat.cpp:524: warning: suggest parentheses around && within || cmlformat.cpp:526: warning: suggest parentheses around && within || cmlformat.cpp:526: warning: suggest parentheses around && within || cmlformat.cpp:528: warning: suggest parentheses around && within || cmlformat.cpp:528: warning: suggest parentheses around && within || cmlformat.cpp: In member function 'void OpenBabel::CMLFormat::MakeAtomIds(OpenBabel::OBMol&, std::vector, std::allocator >, std::allocator, std::allocator > > >&)': cmlformat.cpp:1657: warning: comparison between signed and unsigned integer expressions cmlformat.cpp: In member function 'bool OpenBabel::CMLFormat::WriteVibrationData(OpenBabel::OBMol&)': cmlformat.cpp:1976: warning: comparison between signed and unsigned integer expressions cmlformat.cpp:1962: warning: unused variable 'C_SCALAR' /bin/bash ../../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cmlformat.la -rpath /usr/lib/openbabel/2.2.0 cmlformat.lo xml.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cmlformat.o .libs/xml.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs /usr/lib/libxml2.so ../../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cmlformat.so -o .libs/cmlformat.so libtool: link: ( cd ".libs" && rm -f "cmlformat.la" && ln -s "../cmlformat.la" "cmlformat.la" ) /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c -o cmlreactformat.lo cmlreactformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../../src -I../../../include -I../../../include -I/usr/include/libxml2 -g -O2 -g -Wall -O2 -c cmlreactformat.cpp -fPIC -DPIC -o .libs/cmlreactformat.o cmlreactformat.cpp: In member function 'virtual bool OpenBabel::CMLReactFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': cmlreactformat.cpp:458: warning: comparison between signed and unsigned integer expressions cmlreactformat.cpp:480: warning: comparison between signed and unsigned integer expressions cmlreactformat.cpp: In member function 'bool OpenBabel::CMLReactFormat::WriteRateData(OpenBabel::OBReaction*, xmlChar*)': cmlreactformat.cpp:642: warning: enumeration value 'ARRHENIUS' not handled in switch cmlreactformat.cpp:670: warning: enumeration value 'ARRHENIUS' not handled in switch cmlreactformat.cpp:670: warning: enumeration value 'SRI' not handled in switch cmlreactformat.cpp: In member function 'virtual bool OpenBabel::CMLReactFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': cmlreactformat.cpp:543: warning: 'mollistPos' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cmlreactformat.la -rpath /usr/lib/openbabel/2.2.0 cmlreactformat.lo xml.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cmlreactformat.o .libs/xml.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs /usr/lib/libxml2.so ../../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cmlreactformat.so -o .libs/cmlreactformat.so libtool: link: ( cd ".libs" && rm -f "cmlreactformat.la" && ln -s "../cmlreactformat.la" "cmlreactformat.la" ) make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/xml' Making all in inchi make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichi_bns.lo ichi_bns.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichi_bns.c -fPIC -DPIC -o .libs/ichi_bns.o ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': ichi_bns.c:693: warning: suggest parentheses around && within || ichi_bns.c: In function 'MarkAtomsAtTautGroups': ichi_bns.c:1139: warning: suggest parentheses around && within || ichi_bns.c:1146: warning: suggest parentheses around && within || ichi_bns.c:1166: warning: suggest parentheses around && within || ichi_bns.c:1197: warning: suggest parentheses around && within || ichi_bns.c: In function 'fix_special_bonds': ichi_bns.c:1724: warning: suggest parentheses around assignment used as truth value ichi_bns.c:2025: warning: suggest parentheses around && within || ichi_bns.c:2112: warning: suggest parentheses around && within || ichi_bns.c: In function 'GetAtomChargeType': ichi_bns.c:2332: warning: suggest parentheses around && within || ichi_bns.c:2471: warning: suggest parentheses around && within || ichi_bns.c: In function 'CreateCGroupInBnStruct': ichi_bns.c:2883: warning: suggest parentheses around && within || ichi_bns.c: In function 'RemoveNPProtonsAndAcidCharges': ichi_bns.c:3926: warning: suggest parentheses around assignment used as truth value ichi_bns.c: In function 'bRestoreBnsAfterCheckAltPath': ichi_bns.c:5695: warning: suggest parentheses around assignment used as truth value ichi_bns.c:5711: warning: suggest parentheses around assignment used as truth value ichi_bns.c: In function 'bExistsAltPath': ichi_bns.c:6620: warning: suggest parentheses around && within || ichi_bns.c: In function 'bIgnoreVertexNonTACN_group': ichi_bns.c:7946: warning: suggest parentheses around && within || ichi_bns.c: In function 'MarkRingSystemsAltBns': ichi_bns.c:8796: warning: suggest parentheses around && within || ichi_bns.c:8915: warning: suggest parentheses around && within || ichi_bns.c: In function 'AddRemoveProtonsRestr': ichi_bns.c:9318: warning: suggest parentheses around assignment used as truth value ichi_bns.c:9413: warning: suggest parentheses around assignment used as truth value ichi_bns.c: In function 'EliminatePlusMinusChargeAmbiguity': ichi_bns.c:694: warning: 'cgNeg' may be used uninitialized in this function ichi_bns.c:694: warning: 'cgPos' may be used uninitialized in this function ichi_bns.c: In function 'fix_special_bonds': ichi_bns.c:1713: warning: 'k_N' may be used uninitialized in this function ichi_bns.c:1713: warning: 'k_O' may be used uninitialized in this function ichi_bns.c:1710: warning: 'i4' may be used uninitialized in this function ichi_bns.c:1710: warning: 'i2' may be used uninitialized in this function ichi_bns.c:1710: warning: 'n3' may be used uninitialized in this function ichi_bns.c:1710: warning: 'n2' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichican2.lo ichican2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichican2.c -fPIC -DPIC -o .libs/ichican2.o ichican2.c: In function 'CellGetMinNode': ichican2.c:1083: warning: suggest parentheses around && within || ichican2.c: In function 'CtPartCompare': ichican2.c:1588: warning: suggest parentheses around assignment used as truth value ichican2.c:1621: warning: suggest parentheses around assignment used as truth value ichican2.c:1682: warning: suggest parentheses around assignment used as truth value ichican2.c:1685: warning: suggest parentheses around assignment used as truth value ichican2.c: In function 'CtFullCompare': ichican2.c:1862: warning: suggest parentheses around assignment used as truth value ichican2.c:1891: warning: suggest parentheses around assignment used as truth value ichican2.c:1944: warning: suggest parentheses around assignment used as truth value ichican2.c: In function 'CanonGraph': ichican2.c:2916: warning: suggest parentheses around && within || ichican2.c:2955: warning: suggest parentheses around && within || ichican2.c:2974: warning: suggest parentheses around && within || ichican2.c:3046: warning: suggest parentheses around && within || ichican2.c:3048: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' ichican2.c:3050: warning: the address of 'kLeast_rho_fix' will always evaluate as 'true' ichican2.c:3088: warning: the address of 'kLeast_rho' will always evaluate as 'true' ichican2.c:3179: warning: suggest parentheses around && within || ichican2.c: In function 'GetBaseCanonRanking': ichican2.c:3806: warning: suggest parentheses around && within || ichican2.c:3809: warning: suggest parentheses around && within || ichican2.c:4352: warning: suggest parentheses around && within || ichican2.c:4353: warning: suggest parentheses around && within || ichican2.c:4368: warning: suggest parentheses around && within || ichican2.c:4378: warning: suggest parentheses around && within || ichican2.c:4421: warning: suggest parentheses around assignment used as truth value ichican2.c:4669: warning: suggest parentheses around && within || ichican2.c: In function 'CanonGraph': ichican2.c:2663: warning: 'tvh' may be used uninitialized in this function ichican2.c:2663: warning: 'tvc' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichicano.lo ichicano.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichicano.c -fPIC -DPIC -o .libs/ichicano.o ichicano.c: In function 'InchiTimeMsecDiff': ichicano.c:156: warning: suggest parentheses around && within || ichicano.c: In function 'bInchiTimeIsOver': ichicano.c:237: warning: suggest parentheses around && within || ichicano.c: In function 'AllocateCS': ichicano.c:508: warning: suggest parentheses around && within || ichicano.c:557: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichicans.lo ichicans.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichicans.c -fPIC -DPIC -o .libs/ichicans.o ichicans.c: In function 'UnmarkNonStereo': ichicans.c:254: warning: suggest parentheses around && within || ichicans.c: In function 'FillSingleStereoDescriptors': ichicans.c:366: warning: suggest parentheses around && within || ichicans.c: In function 'MarkKnownEqualStereoBondParities': ichicans.c:754: warning: suggest parentheses around && within || ichicans.c: In function 'PathsHaveIdenticalKnownParities': ichicans.c:1016: warning: suggest parentheses around && within || ichicans.c: In function 'UnmarkNonStereo': ichicans.c:184: warning: 'j' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiisot.lo ichiisot.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiisot.c -fPIC -DPIC -o .libs/ichiisot.o /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichilnct.lo ichilnct.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichilnct.c -fPIC -DPIC -o .libs/ichilnct.o In file included from ichilnct.c:50: ../../../include/inchi/aux2atom.h: In function 'll_INChIToInchi_Atom': ../../../include/inchi/aux2atom.h:506: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:524: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:727: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:759: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:932: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:953: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:967: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:1029: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:1461: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:1474: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:1486: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h:1503: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:1958: warning: suggest parentheses around assignment used as truth value In file included from ichilnct.c:50: ../../../include/inchi/aux2atom.h: In function 'Extract0DParities': ../../../include/inchi/aux2atom.h:2650: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:2668: warning: suggest parentheses around && within || ../../../include/inchi/aux2atom.h:2860: warning: suggest parentheses around assignment used as truth value ichilnct.c: In function 'INChIToInchi_Input': ichilnct.c:199: warning: suggest parentheses around assignment used as truth value ichilnct.c:217: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/aux2atom.h: In function 'Extract0DParities': ../../../include/inchi/aux2atom.h:2700: warning: 'next_ord' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichimak2.lo ichimak2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichimak2.c -fPIC -DPIC -o .libs/ichimak2.o ichimak2.c: In function 'AllocateAndFillHillFormula': ichimak2.c:283: warning: suggest parentheses around assignment used as truth value ichimak2.c: In function 'CopyLinearCTStereoToINChIStereo': ichimak2.c:404: warning: suggest parentheses around && within || ichimak2.c: In function 'UnmarkAllUndefinedUnknownStereo': ichimak2.c:536: warning: suggest parentheses around && within || ichimak2.c: In function 'FillOutINChI': ichimak2.c:728: warning: suggest parentheses around && within || ichimak2.c:915: warning: suggest parentheses around && within || ichimak2.c:978: warning: suggest parentheses around assignment used as truth value ichimak2.c:1003: warning: suggest parentheses around && within || ichimak2.c:1139: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichimake.lo ichimake.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichimake.c -fPIC -DPIC -o .libs/ichimake.o ichimake.c: In function 'CompareHillFormulas': ichimake.c:183: warning: suggest parentheses around assignment used as truth value ichimake.c:186: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompareHillFormulasNoH': ichimake.c:215: warning: suggest parentheses around assignment used as truth value ichimake.c:218: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompareTautNonIsoPartOfINChI': ichimake.c:237: warning: suggest parentheses around assignment used as truth value ichimake.c:241: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompINChITautVsNonTaut': ichimake.c:288: warning: suggest parentheses around assignment used as truth value ichimake.c:297: warning: suggest parentheses around assignment used as truth value ichimake.c:303: warning: suggest parentheses around assignment used as truth value ichimake.c:309: warning: suggest parentheses around assignment used as truth value ichimake.c:313: warning: suggest parentheses around assignment used as truth value ichimake.c:319: warning: suggest parentheses around assignment used as truth value ichimake.c:335: warning: suggest parentheses around assignment used as truth value ichimake.c:393: warning: suggest parentheses around assignment used as truth value ichimake.c:398: warning: suggest parentheses around assignment used as truth value ichimake.c:400: warning: suggest parentheses around assignment used as truth value ichimake.c:406: warning: suggest parentheses around assignment used as truth value ichimake.c:408: warning: suggest parentheses around assignment used as truth value ichimake.c:410: warning: suggest parentheses around assignment used as truth value ichimake.c:416: warning: suggest parentheses around assignment used as truth value ichimake.c:451: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompINChILayers': ichimake.c:965: warning: suggest parentheses around assignment used as truth value ichimake.c:967: warning: suggest parentheses around assignment used as truth value ichimake.c:970: warning: suggest parentheses around assignment used as truth value ichimake.c:972: warning: suggest parentheses around assignment used as truth value ichimake.c:974: warning: suggest parentheses around assignment used as truth value ichimake.c:980: warning: suggest parentheses around assignment used as truth value ichimake.c:982: warning: suggest parentheses around assignment used as truth value ichimake.c:984: warning: suggest parentheses around assignment used as truth value ichimake.c:986: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompareInchiStereo': ichimake.c:1109: warning: suggest parentheses around assignment used as truth value ichimake.c:1111: warning: suggest parentheses around assignment used as truth value ichimake.c:1113: warning: suggest parentheses around assignment used as truth value ichimake.c:1116: warning: suggest parentheses around assignment used as truth value ichimake.c:1129: warning: suggest parentheses around assignment used as truth value ichimake.c:1131: warning: suggest parentheses around assignment used as truth value ichimake.c:1134: warning: suggest parentheses around assignment used as truth value ichimake.c:1138: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompINChI2': ichimake.c:1216: warning: suggest parentheses around assignment used as truth value ichimake.c:1225: warning: suggest parentheses around assignment used as truth value ichimake.c:1231: warning: suggest parentheses around assignment used as truth value ichimake.c:1237: warning: suggest parentheses around assignment used as truth value ichimake.c:1241: warning: suggest parentheses around assignment used as truth value ichimake.c:1247: warning: suggest parentheses around assignment used as truth value ichimake.c:1263: warning: suggest parentheses around assignment used as truth value ichimake.c:1285: warning: suggest parentheses around && within || ichimake.c:1302: warning: suggest parentheses around assignment used as truth value ichimake.c:1366: warning: suggest parentheses around assignment used as truth value ichimake.c:1371: warning: suggest parentheses around assignment used as truth value ichimake.c:1373: warning: suggest parentheses around assignment used as truth value ichimake.c:1379: warning: suggest parentheses around assignment used as truth value ichimake.c:1381: warning: suggest parentheses around assignment used as truth value ichimake.c:1383: warning: suggest parentheses around assignment used as truth value ichimake.c:1389: warning: suggest parentheses around assignment used as truth value ichimake.c:1393: warning: suggest parentheses around assignment used as truth value ichimake.c:1395: warning: suggest parentheses around assignment used as truth value ichimake.c:1397: warning: suggest parentheses around assignment used as truth value ichimake.c:1399: warning: suggest parentheses around assignment used as truth value ichimake.c:1421: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompareDfsDescendants4CT': ichimake.c:1506: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'GetDfsOrder4CT': ichimake.c:1647: warning: suggest parentheses around assignment used as truth value ichimake.c:1685: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'CompareReversedStereoINChI2': ichimake.c:2122: warning: suggest parentheses around && within || ichimake.c: In function 'CompareReversedINChI': ichimake.c:2340: warning: suggest parentheses around assignment used as truth value ichimake.c:2351: warning: suggest parentheses around assignment used as truth value ichimake.c: In function 'Create_INChI': ichimake.c:2791: warning: suggest parentheses around && within || ichimake.c:2992: warning: suggest parentheses around && within || ichimake.c:3130: warning: suggest parentheses around assignment used as truth value ichimake.c:3155: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichimap1.lo ichimap1.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichimap1.c -fPIC -DPIC -o .libs/ichimap1.o ichimap1.c: In function 'CompareLinCtStereoDble': ichimap1.c:143: warning: suggest parentheses around assignment used as truth value ichimap1.c:145: warning: suggest parentheses around assignment used as truth value ichimap1.c:147: warning: suggest parentheses around assignment used as truth value ichimap1.c: In function 'CompareLinCtStereoCarb': ichimap1.c:172: warning: suggest parentheses around assignment used as truth value ichimap1.c:174: warning: suggest parentheses around assignment used as truth value ichimap1.c: In function 'Next_SB_At_CanonRanks2': ichimap1.c:403: warning: suggest parentheses around && within || ichimap1.c:429: warning: suggest parentheses around && within || ichimap1.c: In function 'CurTreeAlloc': ichimap1.c:647: warning: suggest parentheses around assignment used as truth value ichimap1.c: In function 'CurTreeReAlloc': ichimap1.c:661: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichimap2.lo ichimap2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichimap2.c -fPIC -DPIC -o .libs/ichimap2.o ichimap2.c: In function 'HalfStereoBondParity': ichimap2.c:709: warning: suggest parentheses around && within || ichimap2.c:712: warning: suggest parentheses around && within || ichimap2.c: In function 'BreakNeighborsTie': ichimap2.c:1204: warning: suggest parentheses around && within || ichimap2.c:1205: warning: suggest parentheses around && within || ichimap2.c:1226: warning: suggest parentheses around && within || ichimap2.c: In function 'CalculatedPathsParitiesAreIdentical': ichimap2.c:1851: warning: suggest parentheses around && within || ichimap2.c:1876: warning: suggest parentheses around && within || ichimap2.c:2106: warning: suggest parentheses around && within || ichimap2.c:2116: warning: suggest parentheses around && within || ichimap2.c:2131: warning: suggest parentheses around && within || ichimap2.c:2133: warning: suggest parentheses around && within || ichimap2.c:2234: warning: suggest parentheses around && within || ichimap2.c:2235: warning: suggest parentheses around && within || ichimap2.c:2262: warning: suggest parentheses around && within || ichimap2.c:2273: warning: suggest parentheses around && within || ichimap2.c:2281: warning: suggest parentheses around && within || ichimap2.c:2292: warning: suggest parentheses around && within || ichimap2.c: In function 'RemoveCalculatedNonStereoBondParities': ichimap2.c:2496: warning: suggest parentheses around && within || ichimap2.c: In function 'RemoveCalculatedNonStereoCenterParities': ichimap2.c:2720: warning: suggest parentheses around && within || ichimap2.c: In function 'parity_of_mapped_atom2': ichimap2.c:869: warning: 'neigh_canon_from_min' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichimap4.lo ichimap4.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichimap4.c -fPIC -DPIC -o .libs/ichimap4.o ichimap4.c: In function 'map_stereo_bonds4': ichimap4.c:137: warning: suggest parentheses around && within || ichimap4.c:168: warning: suggest parentheses around assignment used as truth value ichimap4.c:181: warning: suggest parentheses around && within || ichimap4.c:181: warning: suggest parentheses around && within || ichimap4.c:753: warning: suggest parentheses around && within || ichimap4.c: In function 'map_stereo_atoms4': ichimap4.c:998: warning: suggest parentheses around && within || ichimap4.c:1218: warning: suggest parentheses around && within || ichimap4.c:1397: warning: suggest parentheses around && within || ichimap4.c:1518: warning: suggest parentheses around && within || ichimap4.c: In function 'map_stereo_bonds4': ichimap4.c:112: warning: 'prevBond2.parity' may be used uninitialized in this function ichimap4.c:112: warning: 'prevBond2.at_num2' may be used uninitialized in this function ichimap4.c:112: warning: 'prevBond2.at_num1' may be used uninitialized in this function ichimap4.c:677: warning: 'at_to_n2' may be used uninitialized in this function ichimap4.c:613: warning: 'at_to_n1' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichinorm.lo ichinorm.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichinorm.c -fPIC -DPIC -o .libs/ichinorm.o /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiparm.lo ichiparm.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiparm.c -fPIC -DPIC -o .libs/ichiparm.o In file included from ichiparm.c:52: ../../../include/inchi/ichiparm.h: In function 'ReadCommandLineParms': ../../../include/inchi/ichiparm.h:430: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/ichiparm.h:441: warning: suggest parentheses around && within || ../../../include/inchi/ichiparm.h:847: warning: suggest parentheses around assignment used as truth value ../../../include/inchi/ichiparm.h:891: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiprt1.lo ichiprt1.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiprt1.c -fPIC -DPIC -o .libs/ichiprt1.o ichiprt1.c: In function 'Needs2addXmlEntityRefs': ichiprt1.c:394: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'OutputINChIXmlStructStartTag': ichiprt1.c:498: warning: suggest parentheses around assignment used as truth value ichiprt1.c:499: warning: suggest parentheses around assignment used as truth value ichiprt1.c:504: warning: suggest parentheses around assignment used as truth value ichiprt1.c:505: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'OutputINChIXmlError': ichiprt1.c:573: warning: suggest parentheses around assignment used as truth value ichiprt1.c:574: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'OutputINChI1': ichiprt1.c:1422: warning: suggest parentheses around && within || ichiprt1.c:1424: warning: suggest parentheses around && within || ichiprt1.c:1489: warning: suggest parentheses around && within || ichiprt1.c:1493: warning: suggest parentheses around && within || ichiprt1.c:1515: warning: suggest parentheses around && within || ichiprt1.c:1520: warning: suggest parentheses around && within || ichiprt1.c:1670: warning: suggest parentheses around && within || ichiprt1.c:1839: warning: suggest parentheses around assignment used as truth value ichiprt1.c:1859: warning: suggest parentheses around assignment used as truth value ichiprt1.c:1880: warning: suggest parentheses around assignment used as truth value ichiprt1.c:1899: warning: suggest parentheses around assignment used as truth value ichiprt1.c:1949: warning: suggest parentheses around assignment used as truth value ichiprt1.c:1972: warning: suggest parentheses around assignment used as truth value ichiprt1.c:2006: warning: suggest parentheses around assignment used as truth value ichiprt1.c:2027: warning: suggest parentheses around assignment used as truth value ichiprt1.c:2046: warning: suggest parentheses around assignment used as truth value ichiprt1.c:2063: warning: suggest parentheses around assignment used as truth value ichiprt1.c:2291: warning: suggest parentheses around && within || ichiprt1.c:2484: warning: suggest parentheses around && within || ichiprt1.c:2486: warning: suggest parentheses around && within || ichiprt1.c: In function 'CleanOrigCoord': ichiprt1.c:3057: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'WriteOrigCoord': ichiprt1.c:3109: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'WriteOrigAtoms': ichiprt1.c:3211: warning: suggest parentheses around assignment used as truth value ichiprt1.c:3218: warning: suggest parentheses around assignment used as truth value ichiprt1.c:3222: warning: suggest parentheses around assignment used as truth value ichiprt1.c:3244: warning: suggest parentheses around assignment used as truth value ichiprt1.c: In function 'WriteOrigBonds': ichiprt1.c:3407: warning: suggest parentheses around && within || ichiprt1.c: In function 'FillOutOrigStruct': ichiprt1.c:3569: warning: suggest parentheses around assignment used as truth value ichiprt1.c:3592: warning: suggest parentheses around assignment used as truth value ichiprt1.c:3611: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiprt2.lo ichiprt2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiprt2.c -fPIC -DPIC -o .libs/ichiprt2.o ichiprt2.c: In function 'Eql_INChI_Isotopic': ichiprt2.c:153: warning: suggest parentheses around && within || ichiprt2.c:157: warning: suggest parentheses around && within || ichiprt2.c: In function 'Eql_INChI_Aux_Num': ichiprt2.c:224: warning: suggest parentheses around && within || ichiprt2.c: In function 'MakeCtStringOld': ichiprt2.c:507: warning: suggest parentheses around && within || ichiprt2.c: In function 'MakeAbcNumber': ichiprt2.c:1459: warning: suggest parentheses around assignment used as truth value ichiprt2.c: In function 'MakeDecNumber': ichiprt2.c:1572: warning: suggest parentheses around assignment used as truth value ichiprt2.c: In function 'MakeIsoTautString': ichiprt2.c:1214: warning: 'nValue' may be used uninitialized in this function ichiprt2.c: In function 'MakeIsoAtomString': ichiprt2.c:1105: warning: 'nValue' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiprt3.lo ichiprt3.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiprt3.c -fPIC -DPIC -o .libs/ichiprt3.o ichiprt3.c: In function 'str_AuxInvIsoSp3': ichiprt3.c:1942: warning: suggest parentheses around && within || ichiprt3.c: In function 'str_Charge2': ichiprt3.c:2571: warning: suggest parentheses around assignment used as truth value ichiprt3.c:2640: warning: suggest parentheses around assignment used as truth value ichiprt3.c:2648: warning: suggest parentheses around assignment used as truth value ichiprt3.c: In function 'bin_AuxTautTrans': ichiprt3.c:2958: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiqueu.lo ichiqueu.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiqueu.c -fPIC -DPIC -o .libs/ichiqueu.o ichiqueu.c: In function 'bIsCenterPointStrict': ichiqueu.c:159: warning: suggest parentheses around && within || ichiqueu.c: In function 'DFS_FindTautAltPath': ichiqueu.c:519: warning: suggest parentheses around && within || ichiqueu.c: In function 'AddBondsPos': ichiqueu.c:635: warning: suggest parentheses around && within || ichiqueu.c: In function 'Check7MembTautRing': ichiqueu.c:808: warning: suggest parentheses around && within || ichiqueu.c:810: warning: suggest parentheses around && within || ichiqueu.c:810: warning: suggest parentheses around && within || ichiqueu.c:819: warning: suggest parentheses around assignment used as truth value ichiqueu.c: In function 'Check6MembTautRing': ichiqueu.c:1059: warning: suggest parentheses around assignment used as truth value ichiqueu.c: In function 'Check15TautPath': ichiqueu.c:1254: warning: suggest parentheses around assignment used as truth value ichiqueu.c: In function 'Check5MembTautRing': ichiqueu.c:1393: warning: suggest parentheses around && within || ichiqueu.c:1395: warning: suggest parentheses around && within || ichiqueu.c:1395: warning: suggest parentheses around && within || ichiqueu.c:1403: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiread.lo ichiread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiread.c -fPIC -DPIC -o .libs/ichiread.o ichiread.c: In function 'ReadWriteInChI': ichiread.c:784: warning: the address of 'szMessage' will always evaluate as 'true' ichiread.c: In function 'OutputInChIAsRequested': ichiread.c:1048: warning: suggest parentheses around && within || ichiread.c:1077: warning: suggest parentheses around && within || ichiread.c:1149: warning: suggest parentheses around && within || ichiread.c:1179: warning: suggest parentheses around && within || ichiread.c: In function 'bInpInchiComponentExists': ichiread.c:1378: warning: suggest parentheses around && within || ichiread.c: In function 'bInpInchiComponentDeleted': ichiread.c:1390: warning: suggest parentheses around && within || ichiread.c: In function 'bRevInchiComponentExists': ichiread.c:1402: warning: suggest parentheses around && within || ichiread.c:1403: warning: suggest parentheses around && within || ichiread.c: In function 'bRevInchiComponentDeleted': ichiread.c:1416: warning: suggest parentheses around && within || ichiread.c:1417: warning: suggest parentheses around && within || ichiread.c: In function 'bInChIHasReconnectedMetal': ichiread.c:1525: warning: suggest parentheses around && within || ichiread.c: In function 'SetProtonsAndXchgIsoH': ichiread.c:1627: warning: suggest parentheses around && within || ichiread.c: In function 'InChILine2Data': ichiread.c:1950: warning: suggest parentheses around && within || ichiread.c:1958: warning: suggest parentheses around && within || ichiread.c:2022: warning: suggest parentheses around && within || ichiread.c:2102: warning: suggest parentheses around && within || ichiread.c:2109: warning: suggest parentheses around && within || ichiread.c:2156: warning: suggest parentheses around && within || ichiread.c:2198: warning: suggest parentheses around && within || ichiread.c:2281: warning: suggest parentheses around && within || ichiread.c: In function 'ParseAuxSegmentNumbers': ichiread.c:2665: warning: suggest parentheses around && within || ichiread.c: In function 'ReadInChICoord': ichiread.c:3193: warning: suggest parentheses around && within || ichiread.c: In function 'ReadInChILine': ichiread.c:3473: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentIsoAtoms': ichiread.c:3990: warning: suggest parentheses around && within || ichiread.c:4018: warning: suggest parentheses around && within || ichiread.c:4132: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentSp3s': ichiread.c:4310: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentSp3m': ichiread.c:4411: warning: suggest parentheses around && within || ichiread.c:4472: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentSp3': ichiread.c:4578: warning: suggest parentheses around && within || ichiread.c:4580: warning: suggest parentheses around && within || ichiread.c:4613: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentSp2': ichiread.c:4970: warning: suggest parentheses around && within || ichiread.c:5204: warning: suggest parentheses around && within || ichiread.c:5231: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentCharge': ichiread.c:5351: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentMobileH': ichiread.c:5613: warning: suggest parentheses around assignment used as truth value ichiread.c:5719: warning: suggest parentheses around assignment used as truth value ichiread.c:5812: warning: suggest parentheses around && within || ichiread.c: In function 'ParseSegmentConnections': ichiread.c:6323: warning: suggest parentheses around assignment used as truth value ichiread.c:6330: warning: suggest parentheses around assignment used as truth value ichiread.c:6331: warning: suggest parentheses around assignment used as truth value ichiread.c:6345: warning: suggest parentheses around assignment used as truth value ichiread.c:6346: warning: suggest parentheses around assignment used as truth value ichiread.c:6389: warning: suggest parentheses around assignment used as truth value ichiread.c:6405: warning: suggest parentheses around assignment used as truth value ichiread.c:6417: warning: suggest parentheses around assignment used as truth value ichiread.c:6424: warning: suggest parentheses around assignment used as truth value ichiread.c:6446: warning: suggest parentheses around assignment used as truth value ichiread.c: In function 'ParseSegmentFormula': ichiread.c:6643: warning: suggest parentheses around assignment used as truth value ichiread.c:6654: warning: suggest parentheses around assignment used as truth value ichiread.c: In function 'CopySegment': ichiread.c:6878: warning: suggest parentheses around && within || ichiread.c:6931: warning: suggest parentheses around && within || ichiread.c: In function 'ParseAuxSegmentNumbers': ichiread.c:2604: warning: 'bIso_From' may be used uninitialized in this function ichiread.c: In function 'ParseSegmentIsoAtoms': ichiread.c:3968: warning: 'len' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichiring.lo ichiring.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichiring.c -fPIC -DPIC -o .libs/ichiring.o ichiring.c: In function 'GetMinRingSize': ichiring.c:194: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr1.lo ichirvr1.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr1.c -fPIC -DPIC -o .libs/ichirvr1.o ichirvr1.c: In function 'cmp_charge_val': ichirvr1.c:664: warning: suggest parentheses around assignment used as truth value ichirvr1.c:666: warning: suggest parentheses around assignment used as truth value ichirvr1.c:668: warning: suggest parentheses around assignment used as truth value ichirvr1.c: In function 'bMayBeACationInMobileHLayer': ichirvr1.c:688: warning: suggest parentheses around assignment used as truth value ichirvr1.c:696: warning: suggest parentheses around assignment used as truth value ichirvr1.c: In function 'clean_charge_val': ichirvr1.c:757: warning: suggest parentheses around && within || ichirvr1.c: In function 'BondFlowMaxcapMinorder': ichirvr1.c:1481: warning: suggest parentheses around && within || ichirvr1.c:1502: warning: suggest parentheses around && within || ichirvr1.c: In function 'nAddSuperCGroups': ichirvr1.c:1976: warning: suggest parentheses around && within || ichirvr1.c: In function 'AddCGroups2TCGBnStruct': ichirvr1.c:2963: warning: suggest parentheses around && within || ichirvr1.c:3051: warning: suggest parentheses around && within || ichirvr1.c: In function 'comp_cc_cand': ichirvr1.c:3821: warning: suggest parentheses around assignment used as truth value ichirvr1.c:3823: warning: suggest parentheses around assignment used as truth value ichirvr1.c:3825: warning: suggest parentheses around assignment used as truth value ichirvr1.c:3827: warning: suggest parentheses around assignment used as truth value ichirvr1.c:3829: warning: suggest parentheses around assignment used as truth value ichirvr1.c: In function 'AddToEdgeList': ichirvr1.c:3943: warning: suggest parentheses around assignment used as truth value ichirvr1.c: In function 'RemoveFromEdgeListByValue': ichirvr1.c:3983: warning: suggest parentheses around assignment used as truth value ichirvr1.c: In function 'MakeOneInChIOutOfStrFromINChI': ichirvr1.c:4338: warning: suggest parentheses around assignment used as truth value ichirvr1.c:4361: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr2.lo ichirvr2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr2.c -fPIC -DPIC -o .libs/ichirvr2.o ichirvr2.c: In function 'RestoreAtomConnectionsSetStereo': ichirvr2.c:163: warning: suggest parentheses around assignment used as truth value ichirvr2.c:265: warning: suggest parentheses around && within || ichirvr2.c: In function 'CopyBnsToAtom': ichirvr2.c:746: warning: suggest parentheses around assignment used as truth value ichirvr2.c:753: warning: suggest parentheses around assignment used as truth value ichirvr2.c:765: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'set_cumulene_0D_parity': ichirvr2.c:1314: warning: suggest parentheses around assignment used as truth value ichirvr2.c:1325: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'MoveRadToAtomsAddCharges': ichirvr2.c:1502: warning: suggest parentheses around assignment used as truth value ichirvr2.c:1573: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': ichirvr2.c:1767: warning: suggest parentheses around && within || ichirvr2.c:1768: warning: suggest parentheses around && within || ichirvr2.c:2270: warning: suggest parentheses around && within || ichirvr2.c:2454: warning: suggest parentheses around && within || ichirvr2.c: In function 'RearrangePlusMinusEdgesFlow': ichirvr2.c:2722: warning: suggest parentheses around assignment used as truth value ichirvr2.c:2755: warning: suggest parentheses around assignment used as truth value ichirvr2.c:2763: warning: suggest parentheses around assignment used as truth value ichirvr2.c:2770: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'IncrementZeroOrderBondsToHeteroat': ichirvr2.c:2861: warning: suggest parentheses around assignment used as truth value ichirvr2.c:2875: warning: suggest parentheses around assignment used as truth value ichirvr2.c:2914: warning: suggest parentheses around && within || ichirvr2.c:2922: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'MovePlusFromS2DiaminoCarbon': ichirvr2.c:3065: warning: suggest parentheses around && within || ichirvr2.c: In function 'EliminateChargeSeparationOnHeteroatoms': ichirvr2.c:3196: warning: suggest parentheses around && within || ichirvr2.c: In function 'RestoreCyanoGroup': ichirvr2.c:3696: warning: suggest parentheses around && within || ichirvr2.c: In function 'RestoreIsoCyanoGroup': ichirvr2.c:3762: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3767: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3775: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3780: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3786: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3866: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3869: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3872: warning: suggest parentheses around assignment used as truth value ichirvr2.c:3903: warning: suggest parentheses around && within || ichirvr2.c:3942: warning: suggest parentheses around && within || ichirvr2.c: In function 'FixMetal_Nminus_Ominus': ichirvr2.c:4034: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4040: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4046: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4086: warning: suggest parentheses around && within || ichirvr2.c: In function 'RestoreNNNgroup': ichirvr2.c:4202: warning: suggest parentheses around && within || ichirvr2.c:4208: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4211: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4240: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4248: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4252: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4302: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4310: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4320: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4330: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4333: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4343: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4346: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4424: warning: suggest parentheses around && within || ichirvr2.c:4497: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4500: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4503: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4506: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4509: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4519: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4522: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4525: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4528: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4540: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4543: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4546: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4549: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4565: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4568: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4571: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4583: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4586: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4589: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4600: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4605: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4634: warning: suggest parentheses around && within || ichirvr2.c:4640: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4643: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4646: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4649: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4652: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'EliminateNitrogen5Val3Bonds': ichirvr2.c:4736: warning: suggest parentheses around && within || ichirvr2.c: In function 'Convert_SIV_to_SVI': ichirvr2.c:4901: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4910: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4930: warning: suggest parentheses around assignment used as truth value ichirvr2.c:4996: warning: suggest parentheses around && within || ichirvr2.c:5018: warning: suggest parentheses around assignment used as truth value ichirvr2.c: In function 'PlusFromDB_N_DB_O_to_Metal': ichirvr2.c:5080: warning: suggest parentheses around assignment used as truth value ichirvr2.c:5085: warning: suggest parentheses around assignment used as truth value ichirvr2.c:5122: warning: suggest parentheses around assignment used as truth value ichirvr2.c:5150: warning: suggest parentheses around && within || ichirvr2.c: In function 'RemoveRadFromMobileHEndpoint': ichirvr2.c:5347: warning: suggest parentheses around && within || ichirvr2.c:5353: warning: suggest parentheses around && within || ichirvr2.c:5353: warning: suggest parentheses around && within || ichirvr2.c:5470: warning: suggest parentheses around && within || ichirvr2.c:5476: warning: suggest parentheses around && within || ichirvr2.c:5476: warning: suggest parentheses around && within || ichirvr2.c:5555: warning: suggest parentheses around && within || ichirvr2.c: In function 'RemoveRadFromMobileHEndpointFixH': ichirvr2.c:5748: warning: suggest parentheses around && within || ichirvr2.c:5754: warning: suggest parentheses around && within || ichirvr2.c:5754: warning: suggest parentheses around && within || ichirvr2.c:5860: warning: suggest parentheses around && within || ichirvr2.c:5866: warning: suggest parentheses around && within || ichirvr2.c:5866: warning: suggest parentheses around && within || ichirvr2.c:5892: warning: suggest parentheses around && within || ichirvr2.c:5991: warning: suggest parentheses around && within || ichirvr2.c:5993: warning: suggest parentheses around && within || ichirvr2.c:6062: warning: suggest parentheses around && within || ichirvr2.c:6138: warning: suggest parentheses around && within || ichirvr2.c:6140: warning: suggest parentheses around && within || ichirvr2.c: In function 'MoveChargeToMakeCenerpoints': ichirvr2.c:6256: warning: suggest parentheses around assignment used as truth value ichirvr2.c:6272: warning: suggest parentheses around && within || ichirvr2.c:6311: warning: suggest parentheses around && within || ichirvr2.c: In function 'AdjustTgroupsToForbiddenEdges2': ichirvr2.c:1647: warning: 'ev1' may be used uninitialized in this function ichirvr2.c:1647: warning: 'e' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr3.lo ichirvr3.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr3.c -fPIC -DPIC -o .libs/ichirvr3.o ichirvr3.c: In function 'FillTgDiffHChgFH': ichirvr3.c:226: warning: suggest parentheses around assignment used as truth value ichirvr3.c: In function 'FixFixedHRestoredStructure': ichirvr3.c:304: warning: suggest parentheses around assignment used as truth value ichirvr3.c:317: warning: suggest parentheses around assignment used as truth value ichirvr3.c:320: warning: suggest parentheses around assignment used as truth value ichirvr3.c:324: warning: suggest parentheses around assignment used as truth value ichirvr3.c:338: warning: suggest parentheses around assignment used as truth value ichirvr3.c:348: warning: suggest parentheses around assignment used as truth value ichirvr3.c:370: warning: suggest parentheses around assignment used as truth value ichirvr3.c:374: warning: suggest parentheses around assignment used as truth value ichirvr3.c:384: warning: suggest parentheses around && within || ichirvr3.c:414: warning: suggest parentheses around assignment used as truth value ichirvr3.c:426: warning: suggest parentheses around assignment used as truth value ichirvr3.c:432: warning: suggest parentheses around assignment used as truth value ichirvr3.c:455: warning: suggest parentheses around && within || ichirvr3.c:482: warning: suggest parentheses around assignment used as truth value ichirvr3.c:488: warning: suggest parentheses around assignment used as truth value ichirvr3.c:518: warning: suggest parentheses around && within || ichirvr3.c:527: warning: suggest parentheses around assignment used as truth value ichirvr3.c:539: warning: suggest parentheses around && within || ichirvr3.c:547: warning: suggest parentheses around assignment used as truth value ichirvr3.c:552: warning: suggest parentheses around assignment used as truth value ichirvr3.c:576: warning: suggest parentheses around && within || ichirvr3.c:610: warning: suggest parentheses around assignment used as truth value ichirvr3.c:616: warning: suggest parentheses around assignment used as truth value ichirvr3.c:662: warning: suggest parentheses around assignment used as truth value ichirvr3.c:684: warning: suggest parentheses around assignment used as truth value ichirvr3.c:689: warning: suggest parentheses around assignment used as truth value ichirvr3.c:712: warning: suggest parentheses around && within || ichirvr3.c:739: warning: suggest parentheses around assignment used as truth value ichirvr3.c:745: warning: suggest parentheses around assignment used as truth value ichirvr3.c:797: warning: suggest parentheses around && within || ichirvr3.c:801: warning: suggest parentheses around assignment used as truth value ichirvr3.c:806: warning: suggest parentheses around assignment used as truth value ichirvr3.c:830: warning: suggest parentheses around && within || ichirvr3.c:857: warning: suggest parentheses around assignment used as truth value ichirvr3.c:863: warning: suggest parentheses around assignment used as truth value ichirvr3.c:896: warning: suggest parentheses around && within || ichirvr3.c:906: warning: suggest parentheses around assignment used as truth value ichirvr3.c:926: warning: suggest parentheses around assignment used as truth value ichirvr3.c:931: warning: suggest parentheses around assignment used as truth value ichirvr3.c:954: warning: suggest parentheses around && within || ichirvr3.c:981: warning: suggest parentheses around assignment used as truth value ichirvr3.c:987: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1012: warning: suggest parentheses around && within || ichirvr3.c:1022: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1038: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1043: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1066: warning: suggest parentheses around && within || ichirvr3.c:1093: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1099: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1140: warning: suggest parentheses around && within || ichirvr3.c:1149: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1180: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1202: warning: suggest parentheses around && within || ichirvr3.c:1233: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1239: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1284: warning: suggest parentheses around && within || ichirvr3.c:1287: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1298: warning: suggest parentheses around && within || ichirvr3.c:1302: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1307: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1337: warning: suggest parentheses around && within || ichirvr3.c:1368: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1374: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1398: warning: suggest parentheses around && within || ichirvr3.c:1409: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1421: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1427: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1450: warning: suggest parentheses around && within || ichirvr3.c:1477: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1483: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1493: warning: suggest parentheses around && within || ichirvr3.c:1541: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1563: warning: suggest parentheses around && within || ichirvr3.c:1591: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1597: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1606: warning: suggest parentheses around && within || ichirvr3.c:1656: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1686: warning: suggest parentheses around && within || ichirvr3.c:1717: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1723: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1808: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1822: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1882: warning: suggest parentheses around && within || ichirvr3.c:1899: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1918: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1924: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1966: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1986: warning: suggest parentheses around assignment used as truth value ichirvr3.c:1991: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2014: warning: suggest parentheses around && within || ichirvr3.c:2041: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2047: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2085: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2108: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2113: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2136: warning: suggest parentheses around && within || ichirvr3.c:2163: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2169: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2210: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2229: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2234: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2261: warning: suggest parentheses around && within || ichirvr3.c:2290: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2296: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2366: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2369: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2392: warning: suggest parentheses around && within || ichirvr3.c:2422: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2428: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2453: warning: suggest parentheses around && within || ichirvr3.c:2506: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2526: warning: suggest parentheses around && within || ichirvr3.c:2569: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2575: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2610: warning: suggest parentheses around && within || ichirvr3.c:2639: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2644: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2691: warning: suggest parentheses around && within || ichirvr3.c:2751: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2757: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2798: warning: suggest parentheses around && within || ichirvr3.c:2848: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2851: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2857: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2863: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2870: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2897: warning: suggest parentheses around && within || ichirvr3.c:2923: warning: suggest parentheses around assignment used as truth value ichirvr3.c:2929: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3024: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3029: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3056: warning: suggest parentheses around && within || ichirvr3.c:3082: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3088: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3106: warning: suggest parentheses around && within || ichirvr3.c:3172: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3181: warning: suggest parentheses around && within || ichirvr3.c:3188: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3283: warning: suggest parentheses around && within || ichirvr3.c:3314: warning: suggest parentheses around && within || ichirvr3.c:3371: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3377: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3390: warning: suggest parentheses around && within || ichirvr3.c:3443: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3448: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3495: warning: suggest parentheses around && within || ichirvr3.c:3524: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3530: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3577: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3603: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3631: warning: suggest parentheses around && within || ichirvr3.c:3662: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3668: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3698: warning: suggest parentheses around && within || ichirvr3.c:3714: warning: suggest parentheses around && within || ichirvr3.c:3725: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3730: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3779: warning: suggest parentheses around && within || ichirvr3.c:3808: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3814: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3860: warning: suggest parentheses around && within || ichirvr3.c:3865: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3878: warning: suggest parentheses around && within || ichirvr3.c:3903: warning: suggest parentheses around && within || ichirvr3.c:3933: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3939: warning: suggest parentheses around assignment used as truth value ichirvr3.c:3982: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4033: warning: suggest parentheses around && within || ichirvr3.c:4063: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4069: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4118: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4156: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4162: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4184: warning: suggest parentheses around && within || ichirvr3.c:4210: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4216: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4264: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4330: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4353: warning: suggest parentheses around && within || ichirvr3.c:4379: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4385: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4491: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4497: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4503: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4510: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4521: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4543: warning: suggest parentheses around && within || ichirvr3.c:4574: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4580: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4640: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4645: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4672: warning: suggest parentheses around && within || ichirvr3.c:4699: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4705: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4827: warning: suggest parentheses around assignment used as truth value ichirvr3.c:4970: warning: suggest parentheses around && within || ichirvr3.c:5007: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5013: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5217: warning: suggest parentheses around && within || ichirvr3.c:5252: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5258: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5329: warning: suggest parentheses around && within || ichirvr3.c:5338: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5346: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5349: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5438: warning: suggest parentheses around && within || ichirvr3.c:5473: warning: suggest parentheses around assignment used as truth value ichirvr3.c:5479: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr4.lo ichirvr4.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr4.c -fPIC -DPIC -o .libs/ichirvr4.o ichirvr4.c: In function 'ForbidCarbonChargeEdges': ichirvr4.c:56: warning: suggest parentheses around assignment used as truth value ichirvr4.c:78: warning: suggest parentheses around assignment used as truth value ichirvr4.c: In function 'ForbidNintrogenPlus2BondsInSmallRings': ichirvr4.c:115: warning: suggest parentheses around assignment used as truth value ichirvr4.c: In function 'FixLessHydrogenInFormula': ichirvr4.c:152: warning: suggest parentheses around assignment used as truth value ichirvr4.c:157: warning: suggest parentheses around assignment used as truth value ichirvr4.c:163: warning: suggest parentheses around assignment used as truth value ichirvr4.c:246: warning: suggest parentheses around && within || ichirvr4.c:261: warning: suggest parentheses around assignment used as truth value ichirvr4.c:277: warning: suggest parentheses around && within || ichirvr4.c: In function 'FixMoreHydrogenInFormula': ichirvr4.c:332: warning: suggest parentheses around assignment used as truth value ichirvr4.c:338: warning: suggest parentheses around assignment used as truth value ichirvr4.c:344: warning: suggest parentheses around assignment used as truth value ichirvr4.c:394: warning: suggest parentheses around && within || ichirvr4.c: In function 'FixRemoveExtraTautEndpoints': ichirvr4.c:480: warning: suggest parentheses around assignment used as truth value ichirvr4.c:486: warning: suggest parentheses around assignment used as truth value ichirvr4.c:492: warning: suggest parentheses around assignment used as truth value ichirvr4.c:556: warning: suggest parentheses around && within || ichirvr4.c: In function 'FillOutExtraFixedHDataRestr': ichirvr4.c:608: warning: suggest parentheses around && within || ichirvr4.c: In function 'CheckAndRefixStereobonds': ichirvr4.c:1428: warning: suggest parentheses around assignment used as truth value ichirvr4.c: In function 'MoveChargeToRemoveCenerpoints': ichirvr4.c:1488: warning: suggest parentheses around && within || ichirvr4.c:1507: warning: suggest parentheses around assignment used as truth value ichirvr4.c:1537: warning: suggest parentheses around && within || ichirvr4.c:1549: warning: suggest parentheses around && within || ichirvr4.c:1618: warning: suggest parentheses around && within || ichirvr4.c:1661: warning: suggest parentheses around && within || ichirvr4.c:1685: warning: suggest parentheses around && within || ichirvr4.c: In function 'SaltBondsToCoordBonds': ichirvr4.c:1952: warning: suggest parentheses around assignment used as truth value ichirvr4.c:2003: warning: suggest parentheses around && within || ichirvr4.c:2071: warning: suggest parentheses around && within || ichirvr4.c: In function 'RunBnsRestore1': ichirvr4.c:2209: warning: suggest parentheses around && within || ichirvr4.c: In function 'AddRemIsoProtonsInRestrStruct': ichirvr4.c:3110: warning: the address of 'num_prot' will always evaluate as 'true' /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr5.lo ichirvr5.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr5.c -fPIC -DPIC -o .libs/ichirvr5.o ichirvr5.c: In function 'GetPlusMinusVertex': ichirvr5.c:70: warning: suggest parentheses around && within || ichirvr5.c: In function 'FixMobileHRestoredStructure': ichirvr5.c:158: warning: suggest parentheses around assignment used as truth value ichirvr5.c:170: warning: suggest parentheses around assignment used as truth value ichirvr5.c:179: warning: suggest parentheses around assignment used as truth value ichirvr5.c:182: warning: suggest parentheses around assignment used as truth value ichirvr5.c:186: warning: suggest parentheses around assignment used as truth value ichirvr5.c:211: warning: suggest parentheses around assignment used as truth value ichirvr5.c:215: warning: suggest parentheses around assignment used as truth value ichirvr5.c:240: warning: suggest parentheses around assignment used as truth value ichirvr5.c:246: warning: suggest parentheses around assignment used as truth value ichirvr5.c:296: warning: suggest parentheses around assignment used as truth value ichirvr5.c:334: warning: suggest parentheses around && within || ichirvr5.c:379: warning: suggest parentheses around assignment used as truth value ichirvr5.c:382: warning: suggest parentheses around assignment used as truth value ichirvr5.c:495: warning: suggest parentheses around assignment used as truth value ichirvr5.c:528: warning: suggest parentheses around assignment used as truth value ichirvr5.c:574: warning: suggest parentheses around && within || ichirvr5.c:633: warning: suggest parentheses around assignment used as truth value ichirvr5.c:636: warning: suggest parentheses around assignment used as truth value ichirvr5.c:672: warning: suggest parentheses around assignment used as truth value ichirvr5.c:675: warning: suggest parentheses around assignment used as truth value ichirvr5.c:735: warning: suggest parentheses around assignment used as truth value ichirvr5.c:753: warning: suggest parentheses around assignment used as truth value ichirvr5.c:788: warning: suggest parentheses around && within || ichirvr5.c:824: warning: suggest parentheses around assignment used as truth value ichirvr5.c:827: warning: suggest parentheses around assignment used as truth value ichirvr5.c:891: warning: suggest parentheses around && within || ichirvr5.c:918: warning: suggest parentheses around assignment used as truth value ichirvr5.c:921: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1038: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1052: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1057: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1061: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1102: warning: suggest parentheses around && within || ichirvr5.c:1139: warning: suggest parentheses around assignment used as truth value ichirvr5.c:1142: warning: suggest parentheses around assignment used as truth value ichirvr5.c:408: warning: 'peCent2' may be used uninitialized in this function ichirvr5.c:408: warning: 'peTg2' may be used uninitialized in this function ichirvr5.c:407: warning: 'vEndp2' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr6.lo ichirvr6.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr6.c -fPIC -DPIC -o .libs/ichirvr6.o ichirvr6.c: In function 'FixRestoredStructureStereo': ichirvr6.c:279: warning: suggest parentheses around assignment used as truth value ichirvr6.c:364: warning: suggest parentheses around assignment used as truth value ichirvr6.c:420: warning: suggest parentheses around assignment used as truth value ichirvr6.c:530: warning: suggest parentheses around assignment used as truth value ichirvr6.c:536: warning: suggest parentheses around assignment used as truth value ichirvr6.c:541: warning: suggest parentheses around assignment used as truth value ichirvr6.c:547: warning: suggest parentheses around assignment used as truth value ichirvr6.c:555: warning: suggest parentheses around assignment used as truth value ichirvr6.c:594: warning: suggest parentheses around && within || ichirvr6.c:626: warning: suggest parentheses around assignment used as truth value ichirvr6.c:722: warning: suggest parentheses around assignment used as truth value ichirvr6.c:729: warning: suggest parentheses around && within || ichirvr6.c:731: warning: suggest parentheses around assignment used as truth value ichirvr6.c:738: warning: suggest parentheses around assignment used as truth value ichirvr6.c:742: warning: suggest parentheses around assignment used as truth value ichirvr6.c:750: warning: suggest parentheses around assignment used as truth value ichirvr6.c:790: warning: suggest parentheses around && within || ichirvr6.c:822: warning: suggest parentheses around assignment used as truth value ichirvr6.c:920: warning: suggest parentheses around && within || ichirvr6.c:962: warning: suggest parentheses around assignment used as truth value ichirvr6.c:969: warning: suggest parentheses around && within || ichirvr6.c:973: warning: suggest parentheses around assignment used as truth value ichirvr6.c:981: warning: suggest parentheses around assignment used as truth value ichirvr6.c:997: warning: suggest parentheses around assignment used as truth value ichirvr6.c:1009: warning: suggest parentheses around && within || ichirvr6.c:1043: warning: suggest parentheses around assignment used as truth value ichirvr6.c:1130: warning: suggest parentheses around && within || ichirvr6.c:1159: warning: suggest parentheses around assignment used as truth value ichirvr6.c:1166: warning: suggest parentheses around && within || ichirvr6.c:1170: warning: suggest parentheses around assignment used as truth value ichirvr6.c:1178: warning: suggest parentheses around assignment used as truth value ichirvr6.c:1207: warning: suggest parentheses around && within || ichirvr6.c:1231: warning: suggest parentheses around assignment used as truth value ichirvr6.c:64: warning: 'pe' may be used uninitialized in this function ichirvr6.c:62: warning: 'e' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichirvr7.lo ichirvr7.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichirvr7.c -fPIC -DPIC -o .libs/ichirvr7.o ichirvr7.c: In function 'InChI2Atom': ichirvr7.c:96: warning: suggest parentheses around && within || ichirvr7.c: In function 'MarkDisconectedIdenticalToReconnected': ichirvr7.c:163: warning: suggest parentheses around && within || ichirvr7.c: In function 'MergeStructureComponents': ichirvr7.c:233: warning: suggest parentheses around assignment used as truth value ichirvr7.c:237: warning: suggest parentheses around assignment used as truth value ichirvr7.c:241: warning: suggest parentheses around assignment used as truth value ichirvr7.c:245: warning: suggest parentheses around assignment used as truth value ichirvr7.c:296: warning: suggest parentheses around assignment used as truth value ichirvr7.c:298: warning: suggest parentheses around assignment used as truth value ichirvr7.c: In function 'AllInchiToStructure': ichirvr7.c:727: warning: suggest parentheses around && within || ichirvr7.c: In function 'AddProtonAndIsoHBalanceToMobHStruct': ichirvr7.c:827: warning: suggest parentheses around && within || ichirvr7.c: In function 'CompareOneOrigInchiToRevInChI': ichirvr7.c:1608: warning: suggest parentheses around && within || ichirvr7.c:1630: warning: suggest parentheses around && within || ichirvr7.c: In function 'CompareReversedStereoINChI3': ichirvr7.c:1788: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichisort.lo ichisort.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichisort.c -fPIC -DPIC -o .libs/ichisort.o ichisort.c: In function 'insertions_sort_NeighListBySymmAndCanonRank': ichisort.c:131: warning: suggest parentheses around && within || ichisort.c: In function 'CreateNeighListFromLinearCT': ichisort.c:351: warning: suggest parentheses around assignment used as truth value ichisort.c:352: warning: suggest parentheses around assignment used as truth value ichisort.c: In function 'CreateNeighList': ichisort.c:443: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichister.lo ichister.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichister.c -fPIC -DPIC -o .libs/ichister.o ichister.c: In function 'get_z_coord': ichister.c:130: warning: suggest parentheses around assignment used as truth value ichister.c: In function 'Get2DTetrahedralAmbiguity': ichister.c:632: warning: suggest parentheses around && within || ichister.c: In function 'bInpAtomHasRequirdNeigh': ichister.c:1064: warning: suggest parentheses around && within || ichister.c: In function 'bIsSuitableHeteroInpAtom': ichister.c:1256: warning: suggest parentheses around && within || ichister.c: In function 'half_stereo_bond_parity': ichister.c:1712: warning: suggest parentheses around && within || ichister.c: In function 'can_be_a_stereo_bond_with_isotopic_H': ichister.c:2062: warning: suggest parentheses around && within || ichister.c:2110: warning: suggest parentheses around && within || ichister.c:2125: warning: suggest parentheses around && within || ichister.c: In function 'set_stereo_bonds_parity': ichister.c:2467: warning: suggest parentheses around && within || ichister.c:2485: warning: suggest parentheses around && within || ichister.c:2546: warning: suggest parentheses around && within || ichister.c:2776: warning: suggest parentheses around && within || ichister.c:2781: warning: suggest parentheses around && within || ichister.c:2809: warning: suggest parentheses around && within || ichister.c:2816: warning: suggest parentheses around && within || ichister.c: In function 'set_stereo_atom_parity': ichister.c:3290: warning: suggest parentheses around && within || ichister.c: In function 'set_stereo_parity': ichister.c:3511: warning: suggest parentheses around assignment used as truth value ichister.c: In function 'ReconcileAllCmlBondParities': ichister.c:3569: warning: suggest parentheses around assignment used as truth value ichister.c: In function 'set_stereo_atom_parity': ichister.c:2919: warning: 'rmin' may be used uninitialized in this function ichister.c:2919: warning: 'rmax' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ichitaut.lo ichitaut.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ichitaut.c -fPIC -DPIC -o .libs/ichitaut.o ichitaut.c: In function 'AddAtom2DA': ichitaut.c:234: warning: suggest parentheses around && within || ichitaut.c:253: warning: suggest parentheses around && within || ichitaut.c:264: warning: suggest parentheses around && within || ichitaut.c: In function 'RegisterEndPoints': ichitaut.c:484: warning: suggest parentheses around assignment used as truth value ichitaut.c:584: warning: suggest parentheses around assignment used as truth value ichitaut.c:734: warning: suggest parentheses around assignment used as truth value ichitaut.c: In function 'GetNeutralRepsIfNeeded': ichitaut.c:869: warning: suggest parentheses around assignment used as truth value ichitaut.c:905: warning: suggest parentheses around assignment used as truth value ichitaut.c: In function 'FindAccessibleEndPoints': ichitaut.c:1051: warning: suggest parentheses around && within || ichitaut.c: In function 'GetChargeType': ichitaut.c:1329: warning: suggest parentheses around && within || ichitaut.c: In function 'CmpCCandidates': ichitaut.c:1345: warning: suggest parentheses around assignment used as truth value ichitaut.c:1347: warning: suggest parentheses around assignment used as truth value ichitaut.c: In function 'GetSaltChargeType': ichitaut.c:1620: warning: suggest parentheses around && within || ichitaut.c:1622: warning: suggest parentheses around && within || ichitaut.c:1647: warning: suggest parentheses around && within || ichitaut.c: In function 'GetOtherSaltChargeType': ichitaut.c:1782: warning: suggest parentheses around && within || ichitaut.c:1786: warning: suggest parentheses around && within || ichitaut.c: In function 'GetOtherSaltType': ichitaut.c:1882: warning: suggest parentheses around && within || ichitaut.c:1891: warning: suggest parentheses around && within || ichitaut.c: In function 'MarkSaltChargeGroups2': ichitaut.c:2174: warning: suggest parentheses around && within || ichitaut.c:2175: warning: suggest parentheses around && within || ichitaut.c:2217: warning: suggest parentheses around && within || ichitaut.c: In function 'MergeSaltTautGroups': ichitaut.c:2783: warning: suggest parentheses around && within || ichitaut.c:2785: warning: suggest parentheses around && within || ichitaut.c:2797: warning: suggest parentheses around && within || ichitaut.c:2832: warning: suggest parentheses around && within || ichitaut.c: In function 'MakeIsotopicHGroup': ichitaut.c:2963: warning: suggest parentheses around && within || ichitaut.c:2964: warning: suggest parentheses around && within || ichitaut.c:2965: warning: suggest parentheses around && within || ichitaut.c:2967: warning: suggest parentheses around && within || ichitaut.c: In function 'MarkTautomerGroups': ichitaut.c:3120: warning: suggest parentheses around assignment used as truth value ichitaut.c:3264: warning: suggest parentheses around assignment used as truth value ichitaut.c:3429: warning: the address of 'DfsPath' will always evaluate as 'true' ichitaut.c:3577: warning: suggest parentheses around && within || ichitaut.c: In function 'make_a_copy_of_t_group_info': ichitaut.c:3868: warning: suggest parentheses around assignment used as truth value ichitaut.c:3878: warning: suggest parentheses around assignment used as truth value ichitaut.c:3888: warning: suggest parentheses around assignment used as truth value ichitaut.c:3898: warning: suggest parentheses around assignment used as truth value ichitaut.c: In function 'CountTautomerGroups': ichitaut.c:4110: warning: suggest parentheses around assignment used as truth value ichitaut.c:4146: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o inchi_dll.lo inchi_dll.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c inchi_dll.c -fPIC -DPIC -o .libs/inchi_dll.o inchi_dll.c: In function 'GetINCHI': inchi_dll.c:240: warning: suggest parentheses around && within || inchi_dll.c: In function 'AddMOLfileError': inchi_dll.c:469: warning: suggest parentheses around && within || inchi_dll.c:471: warning: suggest parentheses around && within || inchi_dll.c:472: warning: suggest parentheses around && within || inchi_dll.c: In function 'SetBondProperties': inchi_dll.c:967: warning: suggest parentheses around && within || inchi_dll.c:987: warning: suggest parentheses around && within || inchi_dll.c: In function 'SetAtomAndBondProperties': inchi_dll.c:1071: warning: suggest parentheses around && within || inchi_dll.c: In function 'InpAtom0DToInchiAtom': inchi_dll.c:1230: warning: suggest parentheses around && within || inchi_dll.c: In function 'GetINCHIfromINCHI': inchi_dll.c:1596: warning: suggest parentheses around && within || inchi_dll.c: In function 'GetStructFromINCHI': inchi_dll.c:1861: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o inchi_dll_main.lo inchi_dll_main.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c inchi_dll_main.c -fPIC -DPIC -o .libs/inchi_dll_main.o /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o runichi.lo runichi.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c runichi.c -fPIC -DPIC -o .libs/runichi.o runichi.c: In function 'CreateOneComponentINChI': runichi.c:1986: warning: suggest parentheses around && within || runichi.c:2112: warning: suggest parentheses around && within || runichi.c:2128: warning: suggest parentheses around && within || runichi.c: In function 'PreprocessOneStructure': runichi.c:2830: warning: suggest parentheses around assignment used as truth value runichi.c:2861: warning: suggest parentheses around assignment used as truth value runichi.c:2955: warning: suggest parentheses around assignment used as truth value runichi.c: In function 'CreateOneStructureINChI': runichi.c:3810: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o strutil.lo strutil.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c strutil.c -fPIC -DPIC -o .libs/strutil.o strutil.c: In function 'fix_odd_things': strutil.c:123: warning: suggest parentheses around assignment used as truth value strutil.c:157: warning: suggest parentheses around && within || strutil.c:285: warning: suggest parentheses around && within || strutil.c: In function 'remove_ion_pairs': strutil.c:495: warning: suggest parentheses around assignment used as truth value strutil.c:507: warning: suggest parentheses around assignment used as truth value strutil.c:611: warning: suggest parentheses around && within || strutil.c:864: warning: suggest parentheses around && within || strutil.c:936: warning: suggest parentheses around && within || strutil.c:1194: warning: suggest parentheses around && within || strutil.c:1216: warning: suggest parentheses around && within || strutil.c:1220: warning: suggest parentheses around && within || strutil.c: In function 'RemoveInpAtBond': strutil.c:1322: warning: suggest parentheses around && within || strutil.c: In function 'DisconnectInpAtBond': strutil.c:1473: warning: suggest parentheses around assignment used as truth value strutil.c:1476: warning: suggest parentheses around assignment used as truth value strutil.c: In function 'bIsAmmoniumSalt': strutil.c:1517: warning: suggest parentheses around && within || strutil.c:1518: warning: suggest parentheses around && within || strutil.c:1537: warning: suggest parentheses around && within || strutil.c: In function 'bIsMetalSalt': strutil.c:1687: warning: suggest parentheses around && within || strutil.c:1689: warning: suggest parentheses around && within || strutil.c:1716: warning: suggest parentheses around && within || strutil.c:1726: warning: suggest parentheses around && within || strutil.c: In function 'DisconnectSalts': strutil.c:1802: warning: suggest parentheses around && within || strutil.c: In function 'DisconnectOneLigand': strutil.c:2169: warning: suggest parentheses around && within || strutil.c: In function 'bHeteroAtomMayHaveXchgIsoH': strutil.c:2598: warning: suggest parentheses around && within || strutil.c:2644: warning: suggest parentheses around && within || strutil.c: In function 'bNumHeterAtomHasIsotopicH': strutil.c:2683: warning: suggest parentheses around && within || strutil.c:2731: warning: suggest parentheses around && within || strutil.c: In function 'cmp_components': strutil.c:2763: warning: suggest parentheses around assignment used as truth value strutil.c: In function 'Free_INChI': strutil.c:3052: warning: suggest parentheses around assignment used as truth value strutil.c: In function 'WriteOrigAtomDataToSDfile': strutil.c:3730: warning: suggest parentheses around assignment used as truth value strutil.c:3740: warning: suggest parentheses around && within || strutil.c:3740: warning: suggest parentheses around && within || strutil.c:3740: warning: suggest parentheses around && within || strutil.c:3740: warning: suggest parentheses around && within || strutil.c:3776: warning: suggest parentheses around && within || strutil.c:3776: warning: suggest parentheses around && within || strutil.c:3813: warning: suggest parentheses around && within || strutil.c:3813: warning: suggest parentheses around && within || strutil.c:3813: warning: suggest parentheses around && within || strutil.c:3813: warning: suggest parentheses around && within || strutil.c:3849: warning: suggest parentheses around assignment used as truth value strutil.c:3926: warning: suggest parentheses around && within || strutil.c:3948: warning: suggest parentheses around && within || strutil.c:3980: warning: suggest parentheses around && within || strutil.c:3980: warning: suggest parentheses around && within || strutil.c:3980: warning: suggest parentheses around && within || strutil.c:3980: warning: suggest parentheses around && within || strutil.c:3981: warning: suggest parentheses around && within || strutil.c:3985: warning: suggest parentheses around && within || strutil.c:4000: warning: suggest parentheses around && within || strutil.c: In function 'GetMinDistDistribution': strutil.c:2233: warning: 'rt' may be used uninitialized in this function strutil.c:2233: warning: 'ft' may be used uninitialized in this function strutil.c: In function 'fix_odd_things': strutil.c:118: warning: 'c' may be used uninitialized in this function /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o util.lo util.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c util.c -fPIC -DPIC -o .libs/util.o util.c: In function 'extract_ChargeRadical': util.c:371: warning: suggest parentheses around assignment used as truth value util.c:379: warning: suggest parentheses around assignment used as truth value util.c: In function 'get_num_H': util.c:499: warning: suggest parentheses around assignment used as truth value util.c: In function 'mystrncpy': util.c:843: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ikey_base26.lo ikey_base26.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ikey_base26.c -fPIC -DPIC -o .libs/ikey_base26.o /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o inchi_dll_a2.lo inchi_dll_a2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c inchi_dll_a2.c -fPIC -DPIC -o .libs/inchi_dll_a2.o inchi_dll_a2.c: In function 'NormOneStructureINChI': inchi_dll_a2.c:388: warning: unused variable 'res' inchi_dll_a2.c: In function 'NormOneComponentINChI': inchi_dll_a2.c:642: warning: suggest parentheses around && within || inchi_dll_a2.c:756: warning: suggest parentheses around && within || inchi_dll_a2.c:771: warning: suggest parentheses around && within || inchi_dll_a2.c: In function 'CanonOneComponentINChI': inchi_dll_a2.c:952: warning: suggest parentheses around && within || inchi_dll_a2.c:967: warning: suggest parentheses around && within || inchi_dll_a2.c: In function 'Normalization_step': inchi_dll_a2.c:1056: warning: suggest parentheses around && within || inchi_dll_a2.c:1352: warning: suggest parentheses around && within || inchi_dll_a2.c: In function 'Canonicalization_step': inchi_dll_a2.c:1563: warning: suggest parentheses around assignment used as truth value inchi_dll_a2.c:1596: warning: suggest parentheses around assignment used as truth value inchi_dll_a2.c: In function 'CreateCompositeNormAtom': inchi_dll_a2.c:1800: warning: suggest parentheses around && within || inchi_dll_a2.c: In function 'FillOutINChIReducedWarn': inchi_dll_a2.c:2055: warning: suggest parentheses around && within || inchi_dll_a2.c:2242: warning: suggest parentheses around && within || inchi_dll_a2.c:2305: warning: suggest parentheses around assignment used as truth value inchi_dll_a2.c:2330: warning: suggest parentheses around && within || inchi_dll_a2.c:2466: warning: suggest parentheses around assignment used as truth value /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o inchi_dll_a.lo inchi_dll_a.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c inchi_dll_a.c -fPIC -DPIC -o .libs/inchi_dll_a.o inchi_dll_a.c: In function 'INCHIGEN_Setup': inchi_dll_a.c:190: warning: suggest parentheses around && within || /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o ikey_dll.lo ikey_dll.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c ikey_dll.c -fPIC -DPIC -o .libs/ikey_dll.o /bin/bash ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c -o sha2.lo sha2.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../../src -I../../../include/inchi -g -O2 -g -Wall -O2 -c sha2.c -fPIC -DPIC -o .libs/sha2.o /bin/bash ../../../libtool --tag=CC --mode=link cc -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o libinchi.la ichi_bns.lo ichican2.lo ichicano.lo ichicans.lo ichiisot.lo ichilnct.lo ichimak2.lo ichimake.lo ichimap1.lo ichimap2.lo ichimap4.lo ichinorm.lo ichiparm.lo ichiprt1.lo ichiprt2.lo ichiprt3.lo ichiqueu.lo ichiread.lo ichiring.lo ichirvr1.lo ichirvr2.lo ichirvr3.lo ichirvr4.lo ichirvr5.lo ichirvr6.lo ichirvr7.lo ichisort.lo ichister.lo ichitaut.lo inchi_dll.lo inchi_dll_main.lo runichi.lo strutil.lo util.lo ikey_base26.lo inchi_dll_a2.lo inchi_dll_a.lo ikey_dll.lo sha2.lo -lz -lm libtool: link: ar cru .libs/libinchi.a .libs/ichi_bns.o .libs/ichican2.o .libs/ichicano.o .libs/ichicans.o .libs/ichiisot.o .libs/ichilnct.o .libs/ichimak2.o .libs/ichimake.o .libs/ichimap1.o .libs/ichimap2.o .libs/ichimap4.o .libs/ichinorm.o .libs/ichiparm.o .libs/ichiprt1.o .libs/ichiprt2.o .libs/ichiprt3.o .libs/ichiqueu.o .libs/ichiread.o .libs/ichiring.o .libs/ichirvr1.o .libs/ichirvr2.o .libs/ichirvr3.o .libs/ichirvr4.o .libs/ichirvr5.o .libs/ichirvr6.o .libs/ichirvr7.o .libs/ichisort.o .libs/ichister.o .libs/ichitaut.o .libs/inchi_dll.o .libs/inchi_dll_main.o .libs/runichi.o .libs/strutil.o .libs/util.o .libs/ikey_base26.o .libs/inchi_dll_a2.o .libs/inchi_dll_a.o .libs/ikey_dll.o .libs/sha2.o libtool: link: ranlib .libs/libinchi.a libtool: link: ( cd ".libs" && rm -f "libinchi.la" && ln -s "../libinchi.la" "libinchi.la" ) make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o APIInterface.lo APIInterface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c APIInterface.cpp -fPIC -DPIC -o .libs/APIInterface.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o APIInterface.la -rpath /usr/lib/openbabel/2.2.0 APIInterface.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/APIInterface.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,APIInterface.so -o .libs/APIInterface.so libtool: link: ( cd ".libs" && rm -f "APIInterface.la" && ln -s "../APIInterface.la" "APIInterface.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o CSRformat.lo CSRformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c CSRformat.cpp -fPIC -DPIC -o .libs/CSRformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o CSRformat.la -rpath /usr/lib/openbabel/2.2.0 CSRformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/CSRformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,CSRformat.so -o .libs/CSRformat.so libtool: link: ( cd ".libs" && rm -f "CSRformat.la" && ln -s "../CSRformat.la" "CSRformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o PQSformat.lo PQSformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c PQSformat.cpp -fPIC -DPIC -o .libs/PQSformat.o PQSformat.cpp: In member function 'virtual bool OpenBabel::PQSFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': PQSformat.cpp:250: warning: 'pFormat' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o PQSformat.la -rpath /usr/lib/openbabel/2.2.0 PQSformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/PQSformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,PQSformat.so -o .libs/PQSformat.so libtool: link: ( cd ".libs" && rm -f "PQSformat.la" && ln -s "../PQSformat.la" "PQSformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o MCDLformat.lo MCDLformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c MCDLformat.cpp -fPIC -DPIC -o .libs/MCDLformat.o MCDLformat.cpp:1322:2: warning: "/*" within comment MCDLformat.cpp:1325:2: warning: "/*" within comment MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::setMCDL(std::string, OpenBabel::OBMol*, std::string&)': MCDLformat.cpp:1593: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:1605: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:1685: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:1769: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::indexOf(std::string, std::string, int)': MCDLformat.cpp:2051: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2052: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp: In member function 'int OpenBabel::MCDLFormat::lastIndexOf(std::string, std::string)': MCDLformat.cpp:2065: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp: In member function 'bool OpenBabel::MCDLFormat::parseFormula(std::string, std::vector >&)': MCDLformat.cpp:2083: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2085: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2095: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2098: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2108: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2118: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp:2121: warning: comparison between signed and unsigned integer expressions MCDLformat.cpp: In member function 'void OpenBabel::MCDLFormat::solve(int, int (*)[4], int)': MCDLformat.cpp:276: warning: 'jump' may be used uninitialized in this function MCDLformat.cpp:276: warning: 'numdups' may be used uninitialized in this function MCDLformat.cpp:276: warning: 'dupfrag' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o MCDLformat.la -rpath /usr/lib/openbabel/2.2.0 MCDLformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/MCDLformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o 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OpenBabel::ACRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': acrformat.cpp:161: warning: comparison between signed and unsigned integer expressions acrformat.cpp:165: warning: comparison between signed and unsigned integer expressions acrformat.cpp:94: warning: 'scale' may be used uninitialized in this function acrformat.cpp:93: warning: 'bonds' may be used uninitialized in this function acrformat.cpp:93: warning: 'atoms' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o acrformat.la -rpath /usr/lib/openbabel/2.2.0 acrformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/acrformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 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bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': gausscubeformat.cpp:402: warning: comparison between signed and unsigned integer expressions gausscubeformat.cpp:422: warning: comparison between signed and unsigned integer expressions gausscubeformat.cpp:437: warning: comparison between signed and unsigned integer expressions gausscubeformat.cpp:469: warning: comparison between signed and unsigned integer expressions gausscubeformat.cpp:104: warning: unused variable 'title' gausscubeformat.cpp: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': gausscubeformat.cpp:606: warning: format '%5d' expects type 'int', but argument 4 has type 'size_t' gausscubeformat.cpp:606: warning: format '%5d' expects type 'int', but argument 4 has type 'size_t' gausscubeformat.cpp:640: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool 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g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o hinformat.lo hinformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c hinformat.cpp -fPIC -DPIC -o .libs/hinformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o hinformat.la -rpath /usr/lib/openbabel/2.2.0 hinformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/hinformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,hinformat.so -o .libs/hinformat.so libtool: link: ( cd ".libs" && rm -f "hinformat.la" && ln -s "../hinformat.la" "hinformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o inchiformat.lo inchiformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c inchiformat.cpp -fPIC -DPIC -o .libs/inchiformat.o inchiformat.cpp: In member function 'char* OpenBabel::InChIFormat::GetInChIOptions(OpenBabel::OBConversion*, bool)': inchiformat.cpp:966: warning: comparison between signed and unsigned integer expressions inchiformat.cpp: In member function 'virtual bool OpenBabel::InChIFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': inchiformat.cpp:504: warning: 'pX' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o getinchi.lo getinchi.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c getinchi.cpp -fPIC -DPIC -o .libs/getinchi.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la inchi/libinchi.la -Wl,-Bsymbolic-functions -o inchiformat.la -rpath /usr/lib/openbabel/2.2.0 inchiformat.lo getinchi.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/inchiformat.o .libs/getinchi.o -Wl,--whole-archive inchi/.libs/libinchi.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz 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jaguarformat.la -rpath /usr/lib/openbabel/2.2.0 jaguarformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/jaguarformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,jaguarformat.so -o .libs/jaguarformat.so libtool: link: ( cd ".libs" && rm -f "jaguarformat.la" && ln -s "../jaguarformat.la" "jaguarformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o mdlformat.lo mdlformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c mdlformat.cpp -fPIC -DPIC -o .libs/mdlformat.o mdlformat.cpp: In member function 'virtual bool OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': mdlformat.cpp:370: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o alias.lo `test -f '../alias.cpp' || echo './'`../alias.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c ../alias.cpp -fPIC -DPIC -o .libs/alias.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mdlformat.la -rpath /usr/lib/openbabel/2.2.0 mdlformat.lo alias.lo -lz -lm 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-I../../data -I../../include -g -O2 -g -Wall -O2 -c mmcifformat.cpp -fPIC -DPIC -o .libs/mmcifformat.o mmcifformat.cpp: In member function 'virtual const char* OpenBabel::mmCIFFormat::Description()': mmcifformat.cpp:44: warning: statement has no effect mmcifformat.cpp: In member function 'OpenBabel::CIFResidueID& OpenBabel::CIFResidueID::operator=(const OpenBabel::CIFResidueID&)': mmcifformat.cpp:147: warning: no return statement in function returning non-void mmcifformat.cpp: In member function 'virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': mmcifformat.cpp:543: warning: enumeration value 'unread_CIFDataName' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_atom_site_label_entity_id' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_atom_site' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_length_a' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_length_b' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_length_c' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_angle_alpha' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_angle_beta' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_cell_angle_gamma' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_cell' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_name_common' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_name_structure_type' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_name_mineral' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_name_systematic' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_chemical' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_formula_moiety' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_formula_iupac' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_formula_structural' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_chemical_formula_analytical' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_chemical_formula' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_symmetry_Int_Tables_number' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_symmetry_space_group_name_Hall' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_symmetry_space_group_name_H_M' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_symmetry' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_symmetry_equiv_pos_as_xyz' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_symmetry_equiv' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_space_group_IT_number' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_space_group_name_Hall' not handled in switch mmcifformat.cpp:543: warning: enumeration value '_space_group_name_H_M_alt' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_space_group' not handled in switch mmcifformat.cpp:543: warning: enumeration value 'MAX_CIFDataName' not handled in switch mmcifformat.cpp: In member function 'virtual bool OpenBabel::mmCIFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': mmcifformat.cpp:833: warning: format '%d' expects type 'int', but argument 4 has type 'time_t' mmcifformat.cpp:833: warning: format '%d' expects type 'int', but argument 4 has type 'time_t' mmcifformat.cpp:901: warning: format '%u' expects type 'unsigned int', but argument 5 has type 'size_t' mmcifformat.cpp:901: warning: format '%u' expects type 'unsigned int', but argument 5 has type 'size_t' /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mmcifformat.la -rpath /usr/lib/openbabel/2.2.0 mmcifformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mmcifformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mmcifformat.so -o .libs/mmcifformat.so libtool: link: ( cd ".libs" && rm -f "mmcifformat.la" && ln -s "../mmcifformat.la" "mmcifformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o mmodformat.lo mmodformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c mmodformat.cpp -fPIC -DPIC -o .libs/mmodformat.o mmodformat.cpp: In member function 'virtual bool OpenBabel::MacroModFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': mmodformat.cpp:217: warning: suggest explicit braces to avoid ambiguous 'else' /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mmodformat.la -rpath /usr/lib/openbabel/2.2.0 mmodformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mmodformat.o -Wl,-rpath 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OpenBabel::MSIFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': msiformat.cpp:141: warning: comparison between signed and unsigned integer expressions msiformat.cpp:71: warning: unused variable 'title' msiformat.cpp:100: warning: 'bondOrder' may be used uninitialized in this function msiformat.cpp:100: warning: 'endBondAtom' may be used uninitialized in this function msiformat.cpp:100: warning: 'startBondAtom' may be used uninitialized in this function msiformat.cpp:103: warning: 'atom' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o msiformat.la -rpath /usr/lib/openbabel/2.2.0 msiformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/msiformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs 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-c -o pngformat.lo pngformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c pngformat.cpp -fPIC -DPIC -o .libs/pngformat.o pngformat.cpp: In member function 'virtual bool OpenBabel::PNGFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': pngformat.cpp:170: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o pngformat.la -rpath /usr/lib/openbabel/2.2.0 pngformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pngformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib 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OpenBabel::OBMol&)': pqrformat.cpp:176: warning: unused variable 'atom' /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o pqrformat.la -rpath /usr/lib/openbabel/2.2.0 pqrformat.lo atomrecord.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pqrformat.o .libs/atomrecord.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pqrformat.so -o .libs/pqrformat.so libtool: link: ( cd ".libs" && rm -f 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comparison between signed and unsigned integer expressions smilesformat.cpp:2707: warning: comparison between signed and unsigned integer expressions smilesformat.cpp:2709: warning: comparison between signed and unsigned integer expressions smilesformat.cpp:2657: warning: unused variable 'is2D' smilesformat.cpp: In member function 'std::vector > OpenBabel::OBMol2Cansmi::GetCanonClosureDigits(OpenBabel::OBAtom*, OpenBabel::OBBitVec&, std::vector >&)': smilesformat.cpp:2907: warning: unused variable 'bo' smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::ToCansmilesString(OpenBabel::OBCanSmiNode*, char*, OpenBabel::OBBitVec&, std::vector >&, std::vector >&)': smilesformat.cpp:3110: warning: unused variable 'up' smilesformat.cpp:3111: warning: unused variable 'down' smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&, OpenBabel::OBBitVec&, char*)': smilesformat.cpp:3201: warning: comparison between signed and unsigned integer expressions smilesformat.cpp:3232: warning: comparison between signed and unsigned integer expressions smilesformat.cpp: In member function 'void OpenBabel::OBMol2Cansmi::AddHydrogenToChiralCenters(OpenBabel::OBMol&, OpenBabel::OBBitVec&)': smilesformat.cpp:3250: warning: unused variable 'is_modified' smilesformat.cpp: At global scope: smilesformat.cpp:1900: warning: 'bool OpenBabel::IsCisOrTransH(OpenBabel::OBAtom*)' defined but not used /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o smilesformat.la -rpath /usr/lib/openbabel/2.2.0 smilesformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/smilesformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 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g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c xedformat.cpp -fPIC -DPIC -o .libs/xedformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xedformat.la -rpath /usr/lib/openbabel/2.2.0 xedformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xedformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xedformat.so -o .libs/xedformat.so libtool: link: ( cd ".libs" && rm -f "xedformat.la" && ln -s "../xedformat.la" "xedformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o xtcformat.lo xtcformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c xtcformat.cpp -fPIC -DPIC -o .libs/xtcformat.o xtcformat.cpp: In member function 'virtual bool OpenBabel::XTCFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': xtcformat.cpp:159: warning: comparison between signed and unsigned integer expressions xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofint(int)': xtcformat.cpp:402: warning: comparison between signed and unsigned integer expressions xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::sizeofints(int, unsigned int*)': xtcformat.cpp:442: warning: comparison between signed and unsigned integer expressions xtcformat.cpp: In member function 'void OpenBabel::XTCFormat::sendints(int*, int, int, unsigned int*, unsigned int*)': xtcformat.cpp:497: warning: comparison between signed and unsigned integer expressions xtcformat.cpp:498: warning: comparison between signed and unsigned integer expressions xtcformat.cpp:503: warning: comparison between signed and unsigned integer expressions xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::receivebits(int*, int)': xtcformat.cpp:538: warning: comparison between signed and unsigned integer expressions xtcformat.cpp: In member function 'int OpenBabel::XTCFormat::xdr3dfcoord(XDR*, float*, int*, float*)': xtcformat.cpp:778: warning: comparison between signed and unsigned integer expressions xtcformat.cpp:782: warning: comparison between signed and unsigned integer expressions xtcformat.cpp:958: warning: comparison between signed and unsigned integer expressions xtcformat.cpp:675: warning: 'oldsize' may be used uninitialized in this function xtcformat.cpp:682: warning: 'buf' may be used uninitialized in this function xtcformat.cpp:625: warning: 'bitsizeint[0]' may be used uninitialized in this function xtcformat.cpp:625: warning: 'bitsizeint[1]' may be used uninitialized in this function xtcformat.cpp:625: warning: 'bitsizeint[2]' may be used uninitialized in this function xtcformat.cpp:629: warning: 'prevcoord[0]' may be used uninitialized in this function xtcformat.cpp:629: warning: 'prevcoord[1]' may be used uninitialized in this function xtcformat.cpp:629: warning: 'prevcoord[2]' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xtcformat.la -rpath /usr/lib/openbabel/2.2.0 xtcformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xtcformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xtcformat.so -o .libs/xtcformat.so libtool: link: ( cd ".libs" && rm -f "xtcformat.la" && ln -s "../xtcformat.la" "xtcformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o xyzformat.lo xyzformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c xyzformat.cpp -fPIC -DPIC -o .libs/xyzformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xyzformat.la -rpath /usr/lib/openbabel/2.2.0 xyzformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xyzformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xyzformat.so -o .libs/xyzformat.so libtool: link: ( cd ".libs" && rm -f "xyzformat.la" && ln -s "../xyzformat.la" "xyzformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o yasaraformat.lo yasaraformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c yasaraformat.cpp -fPIC -DPIC -o .libs/yasaraformat.o yasaraformat.cpp: In function 'OpenBabel::mobatom* OpenBabel::mob_next(OpenBabel::mobatom*)': yasaraformat.cpp:221: warning: dereferencing type-punned pointer will break strict-aliasing rules yasaraformat.cpp: In function 'void OpenBabel::mob_getid(OpenBabel::atomid*, OpenBabel::mobatom*)': yasaraformat.cpp:239: warning: array subscript is above array bounds yasaraformat.cpp:247: warning: array subscript is above array bounds /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o yasaraformat.la -rpath /usr/lib/openbabel/2.2.0 yasaraformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/yasaraformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,yasaraformat.so -o .libs/yasaraformat.so libtool: link: ( cd ".libs" && rm -f "yasaraformat.la" && ln -s "../yasaraformat.la" "yasaraformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o zindoformat.lo zindoformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c zindoformat.cpp -fPIC -DPIC -o .libs/zindoformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o zindoformat.la -rpath /usr/lib/openbabel/2.2.0 zindoformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/zindoformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,zindoformat.so -o .libs/zindoformat.so libtool: link: ( cd ".libs" && rm -f "zindoformat.la" && ln -s "../zindoformat.la" "zindoformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o chemdrawcdx.lo chemdrawcdx.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c chemdrawcdx.cpp -fPIC -DPIC -o .libs/chemdrawcdx.o chemdrawcdx.cpp: In member function 'int OpenBabel::ChemDrawBinaryFormat::readBond(std::istream*, UINT32, OpenBabel::OBMol*, std::list >&)': chemdrawcdx.cpp:929: warning: 'endID' may be used uninitialized in this function chemdrawcdx.cpp:929: warning: 'bgnID' may be used uninitialized in this function /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o chemdrawcdxformat.la -rpath /usr/lib/openbabel/2.2.0 chemdrawcdx.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/chemdrawcdx.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,chemdrawcdxformat.so -o .libs/chemdrawcdxformat.so libtool: link: ( cd ".libs" && rm -f "chemdrawcdxformat.la" && ln -s "../chemdrawcdxformat.la" "chemdrawcdxformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o chemkinformat.lo chemkinformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c chemkinformat.cpp -fPIC -DPIC -o .libs/chemkinformat.o chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ReadHeader(std::istream&, OpenBabel::OBConversion*)': chemkinformat.cpp:302: warning: comparison between signed and unsigned integer expressions chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ParseReactionLine(OpenBabel::OBReaction*, OpenBabel::OBConversion*)': chemkinformat.cpp:446: warning: comparison between signed and unsigned integer expressions chemkinformat.cpp:566: warning: comparison between signed and unsigned integer expressions chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)': chemkinformat.cpp:630: warning: comparison between signed and unsigned integer expressions chemkinformat.cpp:631: warning: operation on 'i' may be undefined chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::WriteHeader(OpenBabel::OBConversion*)': chemkinformat.cpp:830: warning: comparison between signed and unsigned integer expressions chemkinformat.cpp: In member function 'bool OpenBabel::ChemKinFormat::WriteReactionLine(OpenBabel::OBReaction*, OpenBabel::OBConversion*)': chemkinformat.cpp:898: warning: enumeration value 'ARRHENIUS' not handled in switch chemkinformat.cpp:898: warning: enumeration value 'THREEBODY' not handled in switch chemkinformat.cpp:977: warning: enumeration value 'ARRHENIUS' not handled in switch chemkinformat.cpp:977: warning: enumeration value 'SRI' not handled in switch /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o chemkinformat.la -rpath /usr/lib/openbabel/2.2.0 chemkinformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/chemkinformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,chemkinformat.so -o .libs/chemkinformat.so libtool: link: ( cd ".libs" && rm -f "chemkinformat.la" && ln -s "../chemkinformat.la" "chemkinformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o rxnformat.lo rxnformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c rxnformat.cpp -fPIC -DPIC -o .libs/rxnformat.o rxnformat.cpp: In member function 'virtual bool OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': rxnformat.cpp:217: warning: comparison between signed and unsigned integer expressions rxnformat.cpp:224: warning: comparison between signed and unsigned integer expressions /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o rxnformat.la -rpath /usr/lib/openbabel/2.2.0 rxnformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/rxnformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,rxnformat.so -o .libs/rxnformat.so libtool: link: ( cd ".libs" && rm -f "rxnformat.la" && ln -s "../rxnformat.la" "rxnformat.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c -o rsmiformat.lo rsmiformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -I../../include -I../../data -I../../include -g -O2 -g -Wall -O2 -c rsmiformat.cpp -fPIC -DPIC -o .libs/rsmiformat.o /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o rsmiformat.la -rpath /usr/lib/openbabel/2.2.0 rsmiformat.lo -lz -lm libtool: link: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/rsmiformat.o -Wl,-rpath -Wl,/build/buildd/openbabel-2.2.0/src/.libs ../.libs/libopenbabel.so -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,rsmiformat.so -o .libs/rsmiformat.so libtool: link: ( cd ".libs" && rm -f "rsmiformat.la" && ln -s "../rsmiformat.la" "rsmiformat.la" ) make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/src' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/src' Making all in test make[2]: Entering directory `/build/buildd/openbabel-2.2.0/test' Making all in cmltest make[3]: Entering directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/test' g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o roundtrip.o roundtrip.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o roundtrip roundtrip.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/roundtrip roundtrip.o ../src/.libs/libopenbabel.so -ldl -lz -lm make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/test' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/test' Making all in tools make[2]: Entering directory `/build/buildd/openbabel-2.2.0/tools' g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -g -O2 -g -Wall -O2 -c -o babel.o babel.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o babel babel.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/babel babel.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -g -O2 -g -Wall -O2 -c -o obchiral.o obchiral.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o obchiral obchiral.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/obchiral obchiral.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -g -O2 -g -Wall -O2 -c -o obconformer.o obconformer.cpp In file included from ../include/openbabel/rotamer.h:27, from obconformer.cpp:28: ../include/openbabel/rotor.h: In member function 'bool OpenBabel::rotor_digit::next()': ../include/openbabel/rotor.h:396: warning: comparison between signed and unsigned integer expressions /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o obconformer obconformer.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/obconformer obconformer.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -g -O2 -g -Wall -O2 -c -o obenergy.o obenergy.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o obenergy obenergy.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/obenergy obenergy.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -g -O2 -g -Wall -O2 -c -o obfit.o obfit.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o obfit obfit.o ../src/libopenbabel.la -ldl 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`/build/buildd/openbabel-2.2.0/test' /usr/bin/make aromatic atom bond cansmi cmlreadfile conversion data format formula formalcharge ffghemical ffuff ffmmff94 inchiwrite internalcoord invalidsmarts invalidsmiles iterators logp_psa math mol phmodel residue rings smarts smilesmatch unitcell make[4]: Entering directory `/build/buildd/openbabel-2.2.0/test' g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o aromatest.o aromatest.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o aromatic aromatest.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/aromatic aromatest.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o atom.o atom.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 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-DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o inchiwrite.o inchiwrite.cpp g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o getinchi.o `test -f '../src/formats/getinchi.cpp' || echo './'`../src/formats/getinchi.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o inchiwrite inchiwrite.o getinchi.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/inchiwrite inchiwrite.o getinchi.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o internalcoord.o internalcoord.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o internalcoord internalcoord.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/internalcoord internalcoord.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o invalidsmarts.o invalidsmarts.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o invalidsmarts invalidsmarts.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/invalidsmarts invalidsmarts.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o invalidsmiles.o invalidsmiles.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o invalidsmiles invalidsmiles.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/invalidsmiles invalidsmiles.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o iterators.o iterators.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o iterators iterators.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/iterators iterators.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o logp_psa.o logp_psa.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o logp_psa logp_psa.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/logp_psa logp_psa.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o math.o math.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o math math.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/math math.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o mol.o mol.cpp mol.cpp: In function 'int main(int, char**)': mol.cpp:127: warning: unused variable 'a3' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o mol mol.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/mol mol.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o phmodel.o phmodel.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o phmodel phmodel.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/phmodel phmodel.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o residue.o residue.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o residue residue.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/residue residue.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o ringtest.o ringtest.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o rings ringtest.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/rings ringtest.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o smartstest.o smartstest.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o smarts smartstest.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/smarts smartstest.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o smilesmatch.o smilesmatch.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o smilesmatch smilesmatch.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/smilesmatch smilesmatch.o ../src/.libs/libopenbabel.so -ldl -lz -lm g++ -DHAVE_CONFIG_H -I. -I../src -I../include -I../include -DTESTDATADIR="\"../test/files/\"" -g -O2 -g -Wall -O2 -c -o unitcell.o unitcell.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o unitcell unitcell.o ../src/libopenbabel.la -ldl -lz -lm libtool: link: g++ -g -O2 -g -Wall -O2 -Wl,-Bsymbolic-functions -o .libs/unitcell unitcell.o ../src/.libs/libopenbabel.so -ldl -lz -lm make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/test' /usr/bin/make check-TESTS make[4]: Entering directory `/build/buildd/openbabel-2.2.0/test' top srcdir: .. aromatic......ok atom..........ok bond..........ok cansmi........ok cmlreadfile...ok conversion....ok data..........ok ffghemical....ok ffmmff94......ok ffuff.........ok format........ok formula.......ok formalcharge..ok internalcoord.ok iterators.....ok invalidsmarts.ok invalidsmiles.ok logp_psa......ok math..........ok mol...........ok phmodel.......ok residue.......ok rings.........ok smarts........ok smilesmatch...ok unitcell......ok cml...........ok test-set......skipped all skipped: - roundtrip test set not found. ./inchi.......ok ./inchi2......ok All tests successful, 1 test skipped. Files=30, Tests=107748, 27 wallclock secs (15.02 cusr + 2.34 csys = 17.36 CPU) PASS: wrapper.sh ================== All 1 tests passed ================== make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/test' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/test' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/test' Making check in tools make[2]: Entering directory `/build/buildd/openbabel-2.2.0/tools' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/tools' Making check in doc make[2]: Entering directory `/build/buildd/openbabel-2.2.0/doc' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/doc' Making check in include make[2]: Entering directory `/build/buildd/openbabel-2.2.0/include' Making check in openbabel make[3]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel' Making check in math make[4]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/include' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/include' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/include' Making check in scripts make[2]: Entering directory `/build/buildd/openbabel-2.2.0/scripts' /usr/bin/make check-am make[3]: Entering directory `/build/buildd/openbabel-2.2.0/scripts' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/scripts' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/scripts' make[2]: Entering directory `/build/buildd/openbabel-2.2.0' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/openbabel-2.2.0' make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' touch debian/stamp-makefile-check cd scripts/python; python2.5 setup.py build WARNING: Environment variable OPENBABEL_INSTALL is not set INFO: Looking for library and include files in ../../src and ../../include running build running build_py creating build creating build/lib.linux-x86_64-2.5 copying openbabel.py -> build/lib.linux-x86_64-2.5 copying pybel.py -> build/lib.linux-x86_64-2.5 running build_ext building '_openbabel' extension creating build/temp.linux-x86_64-2.5 gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -g -Wall -O2 -fPIC -I../../include -I/usr/include/python2.5 -c openbabel_python.cpp -o build/temp.linux-x86_64-2.5/openbabel_python.o cc1plus: warning: command line option "-Wstrict-prototypes" is valid for Ada/C/ObjC but not for C++ g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 -g -Wall -O2 build/temp.linux-x86_64-2.5/openbabel_python.o -L../../src/.libs -lopenbabel -o build/lib.linux-x86_64-2.5/_openbabel.so touch build-python-openbabel2.5 cd scripts/python; python2.6 setup.py build WARNING: Environment variable OPENBABEL_INSTALL is not set INFO: Looking for library and include files in ../../src and ../../include running build running build_py creating build/lib.linux-x86_64-2.6 copying openbabel.py -> build/lib.linux-x86_64-2.6 copying pybel.py -> build/lib.linux-x86_64-2.6 running build_ext building '_openbabel' extension creating build/temp.linux-x86_64-2.6 gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -g -Wall -O2 -fPIC -I../../include -I/usr/include/python2.6 -c openbabel_python.cpp -o build/temp.linux-x86_64-2.6/openbabel_python.o cc1plus: warning: command line option "-Wstrict-prototypes" is valid for Ada/C/ObjC but not for C++ g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 -g -Wall -O2 build/temp.linux-x86_64-2.6/openbabel_python.o -L../../src/.libs -lopenbabel -o build/lib.linux-x86_64-2.6/_openbabel.so touch build-python-openbabel2.6 /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules test "`id -u`" = 0 dh_clean -k dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi /usr/bin/make -C . install DESTDIR=/build/buildd/openbabel-2.2.0/debian/tmp/ make[1]: Entering directory `/build/buildd/openbabel-2.2.0' Making install in data make[2]: Entering directory `/build/buildd/openbabel-2.2.0/data' /usr/bin/make install-am make[3]: Entering directory `/build/buildd/openbabel-2.2.0/data' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/data' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/openbabel/2.2.0" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0" /usr/bin/install -c -m 644 'aromatic.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/aromatic.txt' /usr/bin/install -c -m 644 'bondtyp.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/bondtyp.txt' /usr/bin/install -c -m 644 'isotope.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/isotope.txt' /usr/bin/install -c -m 644 'resdata.txt' 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'/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/space-groups.txt' /usr/bin/install -c -m 644 'SMARTS_InteLigand.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/SMARTS_InteLigand.txt' /usr/bin/install -c -m 644 'fragments.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/fragments.txt' /usr/bin/install -c -m 644 'ghemical.prm' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/ghemical.prm' /usr/bin/install -c -m 644 'UFF.prm' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/UFF.prm' /usr/bin/install -c -m 644 'ringtyp.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/ringtyp.txt' /usr/bin/install -c -m 644 'mmffoop.par' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/mmffoop.par' /usr/bin/install -c -m 644 'mmffchg.par' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/mmffchg.par' /usr/bin/install -c -m 644 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'/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/mr.txt' /usr/bin/install -c -m 644 'plugindefines.txt' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/openbabel/2.2.0/plugindefines.txt' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/data' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/data' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/data' Making install in src make[2]: Entering directory `/build/buildd/openbabel-2.2.0/src' /usr/bin/make install-recursive make[3]: Entering directory `/build/buildd/openbabel-2.2.0/src' Making install in math make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/math' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/math' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/math' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/math' Making install in fingerprints make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/fingerprints' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/fingerprints' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/fingerprints' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/fingerprints' Making install in forcefields make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/forcefields' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/forcefields' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/forcefields' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/forcefields' Making install in descriptors make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/descriptors' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/descriptors' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/descriptors' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/descriptors' Making install in ops make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/ops' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/ops' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/ops' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/ops' Making install in . make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src' test -z "/usr/lib" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c 'libopenbabel.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/libopenbabel.la' libtool: install: /usr/bin/install -c .libs/libopenbabel.so.3.0.0 /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/libopenbabel.so.3.0.0 libtool: install: (cd /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib && { ln -s -f libopenbabel.so.3.0.0 libopenbabel.so.3 || { rm -f libopenbabel.so.3 && ln -s libopenbabel.so.3.0.0 libopenbabel.so.3; }; }) libtool: install: (cd /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib && { ln -s -f libopenbabel.so.3.0.0 libopenbabel.so || { rm -f libopenbabel.so && ln -s libopenbabel.so.3.0.0 libopenbabel.so; }; }) libtool: install: /usr/bin/install -c .libs/libopenbabel.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/libopenbabel.la libtool: install: warning: remember to run `libtool --finish /usr/lib' make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src' Making install in formats make[4]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' /usr/bin/make install-recursive make[5]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' Making install in xml make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/xml' make[7]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/xml' make[7]: Nothing to be done for `install-exec-am'. test -z "/usr/lib/openbabel/2.2.0" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0" /bin/bash ../../../libtool --mode=install /usr/bin/install -c 'pubchem.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pubchem.la' libtool: install: warning: relinking `pubchem.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats/xml; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o pubchem.la -rpath /usr/lib/openbabel/2.2.0 pubchem.lo xml.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pubchem.o .libs/xml.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lxml2 -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pubchem.so -o .libs/pubchem.so libtool: install: /usr/bin/install -c .libs/pubchem.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pubchem.so libtool: install: /usr/bin/install -c .libs/pubchem.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pubchem.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../../libtool --mode=install /usr/bin/install -c 'xmlformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xmlformat.la' libtool: install: warning: relinking `xmlformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats/xml; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o xmlformat.la -rpath /usr/lib/openbabel/2.2.0 xmlformat.lo xml.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xmlformat.o .libs/xml.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lxml2 -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xmlformat.so -o .libs/xmlformat.so libtool: install: /usr/bin/install -c .libs/xmlformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xmlformat.so libtool: install: /usr/bin/install -c .libs/xmlformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xmlformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../../libtool --mode=install /usr/bin/install -c 'cdxmlformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cdxmlformat.la' libtool: install: warning: relinking `cdxmlformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats/xml; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cdxmlformat.la -rpath /usr/lib/openbabel/2.2.0 cdxmlformat.lo xml.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cdxmlformat.o .libs/xml.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lxml2 -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cdxmlformat.so -o .libs/cdxmlformat.so libtool: install: /usr/bin/install -c .libs/cdxmlformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cdxmlformat.so libtool: install: /usr/bin/install -c .libs/cdxmlformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cdxmlformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../../libtool --mode=install /usr/bin/install -c 'cmlformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlformat.la' libtool: install: warning: relinking `cmlformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats/xml; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cmlformat.la -rpath /usr/lib/openbabel/2.2.0 cmlformat.lo xml.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cmlformat.o .libs/xml.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lxml2 -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cmlformat.so -o .libs/cmlformat.so libtool: install: /usr/bin/install -c .libs/cmlformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlformat.so libtool: install: /usr/bin/install -c .libs/cmlformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../../libtool --mode=install /usr/bin/install -c 'cmlreactformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlreactformat.la' libtool: install: warning: relinking `cmlreactformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats/xml; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined -lz -lm -lxml2 ../../libopenbabel.la -Wl,-Bsymbolic-functions -o cmlreactformat.la -rpath /usr/lib/openbabel/2.2.0 cmlreactformat.lo xml.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/cmlreactformat.o .libs/xml.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lxml2 -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,cmlreactformat.so -o .libs/cmlreactformat.so libtool: install: /usr/bin/install -c .libs/cmlreactformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlreactformat.so libtool: install: /usr/bin/install -c .libs/cmlreactformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/cmlreactformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' make[7]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/xml' make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/xml' Making install in inchi make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' make[7]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' make[7]: Nothing to be done for `install-exec-am'. make[7]: Nothing to be done for `install-data-am'. make[7]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats/inchi' make[6]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' make[7]: Entering directory `/build/buildd/openbabel-2.2.0/src/formats' make[7]: Nothing to be done for `install-exec-am'. test -z "/usr/lib/openbabel/2.2.0" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0" /bin/bash ../../libtool --mode=install /usr/bin/install -c 'APIInterface.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/APIInterface.la' libtool: install: warning: relinking `APIInterface.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o APIInterface.la -rpath /usr/lib/openbabel/2.2.0 APIInterface.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/APIInterface.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,APIInterface.so -o .libs/APIInterface.so libtool: install: /usr/bin/install -c .libs/APIInterface.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/APIInterface.so libtool: install: /usr/bin/install -c .libs/APIInterface.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/APIInterface.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'CSRformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/CSRformat.la' libtool: install: warning: relinking `CSRformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o CSRformat.la -rpath /usr/lib/openbabel/2.2.0 CSRformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/CSRformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,CSRformat.so -o .libs/CSRformat.so libtool: install: /usr/bin/install -c .libs/CSRformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/CSRformat.so libtool: install: /usr/bin/install -c .libs/CSRformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/CSRformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'PQSformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/PQSformat.la' libtool: install: warning: relinking `PQSformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o PQSformat.la -rpath /usr/lib/openbabel/2.2.0 PQSformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/PQSformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,PQSformat.so -o .libs/PQSformat.so libtool: install: /usr/bin/install -c .libs/PQSformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/PQSformat.so libtool: install: /usr/bin/install -c .libs/PQSformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/PQSformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'MCDLformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/MCDLformat.la' libtool: install: warning: relinking `MCDLformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o MCDLformat.la -rpath /usr/lib/openbabel/2.2.0 MCDLformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/MCDLformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,MCDLformat.so -o .libs/MCDLformat.so libtool: install: /usr/bin/install -c .libs/MCDLformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/MCDLformat.so libtool: install: /usr/bin/install -c .libs/MCDLformat.lai 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/build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o boxformat.la -rpath /usr/lib/openbabel/2.2.0 boxformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/boxformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,boxformat.so -o .libs/boxformat.so libtool: install: 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-L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,fastaformat.so -o .libs/fastaformat.so libtool: install: /usr/bin/install -c .libs/fastaformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/fastaformat.so libtool: install: /usr/bin/install -c .libs/fastaformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/fastaformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fchkformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/fchkformat.la' libtool: install: warning: relinking `fchkformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o fchkformat.la -rpath /usr/lib/openbabel/2.2.0 fchkformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/fchkformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions 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libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/featformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,featformat.so -o .libs/featformat.so libtool: install: /usr/bin/install -c .libs/featformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/featformat.so libtool: install: /usr/bin/install -c .libs/featformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/featformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'fhformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/fhformat.la' libtool: install: warning: relinking `fhformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o fhformat.la -rpath /usr/lib/openbabel/2.2.0 fhformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/fhformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ 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-Wl,-Bsymbolic-functions -o fingerprintformat.la -rpath /usr/lib/openbabel/2.2.0 fingerprintformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/fingerprintformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,fingerprintformat.so -o .libs/fingerprintformat.so libtool: install: /usr/bin/install -c .libs/fingerprintformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/fingerprintformat.so libtool: install: 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-L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,freefracformat.so -o .libs/freefracformat.so libtool: install: /usr/bin/install -c .libs/freefracformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/freefracformat.so libtool: install: /usr/bin/install -c .libs/freefracformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/freefracformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'gamessformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gamessformat.la' libtool: install: warning: relinking `gamessformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o gamessformat.la -rpath /usr/lib/openbabel/2.2.0 gamessformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/gamessformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,gamessformat.so -o .libs/gamessformat.so libtool: install: /usr/bin/install -c .libs/gamessformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gamessformat.so libtool: install: /usr/bin/install -c .libs/gamessformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gamessformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'gamessukformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gamessukformat.la' libtool: install: warning: relinking `gamessukformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la 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-L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,gaussformat.so -o .libs/gaussformat.so libtool: install: /usr/bin/install -c .libs/gaussformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gaussformat.so libtool: install: /usr/bin/install -c .libs/gaussformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gaussformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'ghemicalformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/ghemicalformat.la' libtool: install: warning: relinking `ghemicalformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o ghemicalformat.la -rpath /usr/lib/openbabel/2.2.0 ghemicalformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/ghemicalformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,ghemicalformat.so -o .libs/ghemicalformat.so libtool: install: /usr/bin/install -c .libs/ghemicalformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/ghemicalformat.so libtool: install: /usr/bin/install -c .libs/ghemicalformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/ghemicalformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'gausscubeformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausscubeformat.la' libtool: install: warning: relinking `gausscubeformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o gausscubeformat.la -rpath /usr/lib/openbabel/2.2.0 gausscubeformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/gausscubeformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,gausscubeformat.so -o .libs/gausscubeformat.so libtool: install: /usr/bin/install -c .libs/gausscubeformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausscubeformat.so libtool: install: /usr/bin/install -c .libs/gausscubeformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausscubeformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'gausszmatformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausszmatformat.la' libtool: install: warning: relinking `gausszmatformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o gausszmatformat.la -rpath /usr/lib/openbabel/2.2.0 gausszmatformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/gausszmatformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,gausszmatformat.so -o .libs/gausszmatformat.so libtool: install: /usr/bin/install -c .libs/gausszmatformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausszmatformat.so libtool: install: /usr/bin/install -c .libs/gausszmatformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gausszmatformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'gromos96format.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gromos96format.la' libtool: install: warning: relinking `gromos96format.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o gromos96format.la -rpath /usr/lib/openbabel/2.2.0 gromos96format.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/gromos96format.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,gromos96format.so -o .libs/gromos96format.so libtool: install: /usr/bin/install -c .libs/gromos96format.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gromos96format.so libtool: install: /usr/bin/install -c .libs/gromos96format.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/gromos96format.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'hinformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/hinformat.la' libtool: install: warning: relinking `hinformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o hinformat.la -rpath /usr/lib/openbabel/2.2.0 hinformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/hinformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,hinformat.so -o .libs/hinformat.so libtool: install: /usr/bin/install -c .libs/hinformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/hinformat.so libtool: install: /usr/bin/install -c .libs/hinformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/hinformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'inchiformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/inchiformat.la' libtool: install: warning: relinking `inchiformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la inchi/libinchi.la -Wl,-Bsymbolic-functions -o inchiformat.la -rpath /usr/lib/openbabel/2.2.0 inchiformat.lo getinchi.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/inchiformat.o .libs/getinchi.o -Wl,--whole-archive inchi/.libs/libinchi.a -Wl,--no-whole-archive -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,inchiformat.so -o .libs/inchiformat.so libtool: install: /usr/bin/install -c .libs/inchiformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/inchiformat.so libtool: install: /usr/bin/install -c .libs/inchiformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/inchiformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'jaguarformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/jaguarformat.la' libtool: install: warning: relinking `jaguarformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o jaguarformat.la -rpath /usr/lib/openbabel/2.2.0 jaguarformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/jaguarformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,jaguarformat.so -o .libs/jaguarformat.so libtool: install: /usr/bin/install -c .libs/jaguarformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/jaguarformat.so libtool: install: /usr/bin/install -c .libs/jaguarformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/jaguarformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mdlformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mdlformat.la' libtool: install: warning: relinking `mdlformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mdlformat.la -rpath /usr/lib/openbabel/2.2.0 mdlformat.lo alias.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mdlformat.o .libs/alias.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mdlformat.so -o .libs/mdlformat.so libtool: install: /usr/bin/install -c .libs/mdlformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mdlformat.so libtool: install: /usr/bin/install -c .libs/mdlformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mdlformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mmcifformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmcifformat.la' libtool: install: warning: relinking `mmcifformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mmcifformat.la -rpath /usr/lib/openbabel/2.2.0 mmcifformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mmcifformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mmcifformat.so -o .libs/mmcifformat.so libtool: install: /usr/bin/install -c .libs/mmcifformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmcifformat.so libtool: install: /usr/bin/install -c .libs/mmcifformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmcifformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mmodformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmodformat.la' libtool: install: warning: relinking `mmodformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mmodformat.la -rpath /usr/lib/openbabel/2.2.0 mmodformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mmodformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mmodformat.so -o .libs/mmodformat.so libtool: install: /usr/bin/install -c .libs/mmodformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmodformat.so libtool: install: /usr/bin/install -c .libs/mmodformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mmodformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mpdformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mpdformat.la' libtool: install: warning: relinking `mpdformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mpdformat.la -rpath /usr/lib/openbabel/2.2.0 mpdformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mpdformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mpdformat.so -o .libs/mpdformat.so libtool: install: /usr/bin/install -c .libs/mpdformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mpdformat.so libtool: install: /usr/bin/install -c .libs/mpdformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mpdformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mol2format.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mol2format.la' libtool: install: warning: relinking `mol2format.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mol2format.la -rpath /usr/lib/openbabel/2.2.0 mol2format.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mol2format.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mol2format.so -o .libs/mol2format.so libtool: install: /usr/bin/install -c .libs/mol2format.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mol2format.so libtool: install: /usr/bin/install -c .libs/mol2format.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mol2format.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'moldenformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/moldenformat.la' libtool: install: warning: relinking `moldenformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o moldenformat.la -rpath /usr/lib/openbabel/2.2.0 moldenformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/moldenformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,moldenformat.so -o .libs/moldenformat.so libtool: install: /usr/bin/install -c .libs/moldenformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/moldenformat.so libtool: install: /usr/bin/install -c .libs/moldenformat.lai 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-lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,molreportformat.so -o .libs/molreportformat.so libtool: install: /usr/bin/install -c .libs/molreportformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/molreportformat.so libtool: install: /usr/bin/install -c .libs/molreportformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/molreportformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'mopacformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mopacformat.la' libtool: install: warning: relinking `mopacformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o mopacformat.la -rpath /usr/lib/openbabel/2.2.0 mopacformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mopacformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mopacformat.so -o .libs/mopacformat.so libtool: install: /usr/bin/install -c .libs/mopacformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mopacformat.so libtool: install: /usr/bin/install -c .libs/mopacformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mopacformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'msiformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/msiformat.la' libtool: install: warning: relinking `msiformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o msiformat.la -rpath /usr/lib/openbabel/2.2.0 msiformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared 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-o mpqcformat.la -rpath /usr/lib/openbabel/2.2.0 mpqcformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/mpqcformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,mpqcformat.so -o .libs/mpqcformat.so libtool: install: /usr/bin/install -c .libs/mpqcformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/mpqcformat.so libtool: install: /usr/bin/install -c .libs/mpqcformat.lai 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-lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,nwchemformat.so -o .libs/nwchemformat.so libtool: install: /usr/bin/install -c .libs/nwchemformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/nwchemformat.so libtool: install: /usr/bin/install -c .libs/nwchemformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/nwchemformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'pcmodelformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pcmodelformat.la' libtool: install: warning: relinking `pcmodelformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o pcmodelformat.la -rpath /usr/lib/openbabel/2.2.0 pcmodelformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pcmodelformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pcmodelformat.so -o .libs/pcmodelformat.so libtool: install: /usr/bin/install -c .libs/pcmodelformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pcmodelformat.so libtool: install: /usr/bin/install -c .libs/pcmodelformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pcmodelformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'pngformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pngformat.la' libtool: install: warning: relinking `pngformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o pngformat.la -rpath /usr/lib/openbabel/2.2.0 pngformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ 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--mode=install /usr/bin/install -c 'pdbformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pdbformat.la' libtool: install: warning: relinking `pdbformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o pdbformat.la -rpath /usr/lib/openbabel/2.2.0 pdbformat.lo atomrecord.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/pdbformat.o .libs/atomrecord.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pdbformat.so -o .libs/pdbformat.so libtool: install: /usr/bin/install -c .libs/pdbformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pdbformat.so libtool: install: /usr/bin/install -c .libs/pdbformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pdbformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'povrayformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/povrayformat.la' libtool: install: warning: relinking `povrayformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o povrayformat.la -rpath /usr/lib/openbabel/2.2.0 povrayformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/povrayformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,povrayformat.so -o .libs/povrayformat.so libtool: install: /usr/bin/install -c .libs/povrayformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/povrayformat.so libtool: 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-L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,pqrformat.so -o .libs/pqrformat.so libtool: install: /usr/bin/install -c .libs/pqrformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pqrformat.so libtool: install: /usr/bin/install -c .libs/pqrformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/pqrformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'opendxformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/opendxformat.la' libtool: install: 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-Wl,-soname -Wl,opendxformat.so -o .libs/opendxformat.so libtool: install: /usr/bin/install -c .libs/opendxformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/opendxformat.so libtool: install: /usr/bin/install -c .libs/opendxformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/opendxformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'qchemformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/qchemformat.la' libtool: install: warning: relinking `qchemformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o qchemformat.la -rpath /usr/lib/openbabel/2.2.0 qchemformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/qchemformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,qchemformat.so -o .libs/qchemformat.so libtool: install: /usr/bin/install -c .libs/qchemformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/qchemformat.so libtool: install: /usr/bin/install -c .libs/qchemformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/qchemformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'reportformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/reportformat.la' libtool: install: warning: relinking `reportformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o reportformat.la -rpath /usr/lib/openbabel/2.2.0 reportformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/reportformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,reportformat.so -o .libs/reportformat.so libtool: install: /usr/bin/install -c .libs/reportformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/reportformat.so libtool: install: /usr/bin/install -c .libs/reportformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/reportformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'shelxformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/shelxformat.la' libtool: install: warning: relinking `shelxformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o shelxformat.la -rpath /usr/lib/openbabel/2.2.0 shelxformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/shelxformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,shelxformat.so -o .libs/shelxformat.so libtool: install: /usr/bin/install -c .libs/shelxformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/shelxformat.so libtool: install: /usr/bin/install -c .libs/shelxformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/shelxformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'smilesformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/smilesformat.la' libtool: install: warning: relinking `smilesformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o smilesformat.la -rpath /usr/lib/openbabel/2.2.0 smilesformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/smilesformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,smilesformat.so -o .libs/smilesformat.so libtool: install: /usr/bin/install -c .libs/smilesformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/smilesformat.so libtool: install: /usr/bin/install -c .libs/smilesformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/smilesformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'thermoformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/thermoformat.la' libtool: install: warning: relinking `thermoformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o thermoformat.la -rpath /usr/lib/openbabel/2.2.0 thermoformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/thermoformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,thermoformat.so -o .libs/thermoformat.so libtool: install: /usr/bin/install -c .libs/thermoformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/thermoformat.so libtool: install: /usr/bin/install -c .libs/thermoformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/thermoformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'tinkerformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/tinkerformat.la' libtool: install: warning: relinking `tinkerformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o tinkerformat.la -rpath /usr/lib/openbabel/2.2.0 tinkerformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/tinkerformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,tinkerformat.so -o .libs/tinkerformat.so libtool: install: /usr/bin/install -c .libs/tinkerformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/tinkerformat.so libtool: install: /usr/bin/install -c .libs/tinkerformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/tinkerformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'titleformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/titleformat.la' libtool: install: warning: relinking `titleformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o titleformat.la -rpath /usr/lib/openbabel/2.2.0 titleformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/titleformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,titleformat.so -o .libs/titleformat.so libtool: install: /usr/bin/install -c .libs/titleformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/titleformat.so libtool: install: /usr/bin/install -c .libs/titleformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/titleformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'turbomoleformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/turbomoleformat.la' libtool: install: warning: relinking `turbomoleformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o turbomoleformat.la -rpath /usr/lib/openbabel/2.2.0 turbomoleformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/turbomoleformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,turbomoleformat.so -o .libs/turbomoleformat.so libtool: install: /usr/bin/install -c .libs/turbomoleformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/turbomoleformat.so libtool: install: /usr/bin/install -c .libs/turbomoleformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/turbomoleformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'unichemformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/unichemformat.la' libtool: install: warning: relinking `unichemformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o unichemformat.la -rpath /usr/lib/openbabel/2.2.0 unichemformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/unichemformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,unichemformat.so -o .libs/unichemformat.so libtool: install: /usr/bin/install -c .libs/unichemformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/unichemformat.so libtool: install: /usr/bin/install -c .libs/unichemformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/unichemformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'viewmolformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/viewmolformat.la' libtool: install: warning: relinking `viewmolformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o viewmolformat.la -rpath /usr/lib/openbabel/2.2.0 viewmolformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/viewmolformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,viewmolformat.so -o .libs/viewmolformat.so libtool: install: /usr/bin/install -c .libs/viewmolformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/viewmolformat.so libtool: install: /usr/bin/install -c .libs/viewmolformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/viewmolformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'xedformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xedformat.la' libtool: install: warning: relinking `xedformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xedformat.la -rpath /usr/lib/openbabel/2.2.0 xedformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xedformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xedformat.so -o .libs/xedformat.so libtool: install: /usr/bin/install -c .libs/xedformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xedformat.so libtool: install: /usr/bin/install -c .libs/xedformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xedformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'xtcformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xtcformat.la' libtool: install: warning: relinking `xtcformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xtcformat.la -rpath /usr/lib/openbabel/2.2.0 xtcformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xtcformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xtcformat.so -o .libs/xtcformat.so libtool: install: /usr/bin/install -c .libs/xtcformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xtcformat.so libtool: install: /usr/bin/install -c .libs/xtcformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xtcformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'xyzformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xyzformat.la' libtool: install: warning: relinking `xyzformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o xyzformat.la -rpath /usr/lib/openbabel/2.2.0 xyzformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/xyzformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,xyzformat.so -o .libs/xyzformat.so libtool: install: /usr/bin/install -c .libs/xyzformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xyzformat.so libtool: install: /usr/bin/install -c .libs/xyzformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/xyzformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'yasaraformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/yasaraformat.la' libtool: install: warning: relinking `yasaraformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o yasaraformat.la -rpath /usr/lib/openbabel/2.2.0 yasaraformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/yasaraformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,yasaraformat.so -o .libs/yasaraformat.so libtool: install: /usr/bin/install -c .libs/yasaraformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/yasaraformat.so libtool: install: /usr/bin/install -c .libs/yasaraformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/yasaraformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'zindoformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/zindoformat.la' libtool: install: warning: relinking `zindoformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o zindoformat.la -rpath /usr/lib/openbabel/2.2.0 zindoformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/zindoformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,zindoformat.so -o .libs/zindoformat.so libtool: install: /usr/bin/install -c .libs/zindoformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/zindoformat.so libtool: install: /usr/bin/install -c .libs/zindoformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/zindoformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'chemdrawcdxformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemdrawcdxformat.la' libtool: install: warning: relinking `chemdrawcdxformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o chemdrawcdxformat.la -rpath /usr/lib/openbabel/2.2.0 chemdrawcdx.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/chemdrawcdx.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,chemdrawcdxformat.so -o .libs/chemdrawcdxformat.so libtool: install: /usr/bin/install -c .libs/chemdrawcdxformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemdrawcdxformat.so libtool: install: /usr/bin/install -c .libs/chemdrawcdxformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemdrawcdxformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'chemkinformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemkinformat.la' libtool: install: warning: relinking `chemkinformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o chemkinformat.la -rpath /usr/lib/openbabel/2.2.0 chemkinformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/chemkinformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,chemkinformat.so -o .libs/chemkinformat.so libtool: install: /usr/bin/install -c .libs/chemkinformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemkinformat.so libtool: install: /usr/bin/install -c .libs/chemkinformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/chemkinformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'rxnformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rxnformat.la' libtool: install: warning: relinking `rxnformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o rxnformat.la -rpath /usr/lib/openbabel/2.2.0 rxnformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/rxnformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,rxnformat.so -o .libs/rxnformat.so libtool: install: /usr/bin/install -c .libs/rxnformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rxnformat.so libtool: install: /usr/bin/install -c .libs/rxnformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rxnformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' /bin/bash ../../libtool --mode=install /usr/bin/install -c 'rsmiformat.la' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rsmiformat.la' libtool: install: warning: relinking `rsmiformat.la' libtool: install: (cd /build/buildd/openbabel-2.2.0/src/formats; /bin/bash /build/buildd/openbabel-2.2.0/libtool --tag CXX --mode=relink g++ -g -O2 -g -Wall -O2 -module -avoid-version -no-undefined ../libopenbabel.la -Wl,-Bsymbolic-functions -o rsmiformat.la -rpath /usr/lib/openbabel/2.2.0 rsmiformat.lo -lz -lm -inst-prefix-dir /build/buildd/openbabel-2.2.0/debian/tmp/) libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtbeginS.o .libs/rsmiformat.o -L/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib -L/usr/lib -lopenbabel -ldl -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.3.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,rsmiformat.so -o .libs/rsmiformat.so libtool: install: /usr/bin/install -c .libs/rsmiformat.soT /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rsmiformat.so libtool: install: /usr/bin/install -c .libs/rsmiformat.lai /build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/openbabel/2.2.0/rsmiformat.la libtool: install: warning: remember to run `libtool --finish /usr/lib/openbabel/2.2.0' make[7]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[6]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/src/formats' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/src' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/src' Making install in test make[2]: Entering directory `/build/buildd/openbabel-2.2.0/test' Making install in cmltest make[3]: Entering directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/test/cmltest' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/test' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/test' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c 'roundtrip' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/roundtrip' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/roundtrip /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/roundtrip make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/test' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/test' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/test' Making install in tools make[2]: Entering directory `/build/buildd/openbabel-2.2.0/tools' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/tools' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c 'babel' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/babel' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/babel /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/babel /bin/bash ../libtool --mode=install /usr/bin/install -c 'obchiral' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obchiral' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obchiral /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obchiral /bin/bash ../libtool --mode=install /usr/bin/install -c 'obconformer' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obconformer' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obconformer /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obconformer /bin/bash ../libtool --mode=install /usr/bin/install -c 'obenergy' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obenergy' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obenergy /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obenergy /bin/bash ../libtool --mode=install /usr/bin/install -c 'obfit' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obfit' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obfit /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obfit /bin/bash ../libtool --mode=install /usr/bin/install -c 'obgen' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obgen' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obgen /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obgen /bin/bash ../libtool --mode=install /usr/bin/install -c 'obgrep' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obgrep' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obgrep /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obgrep /bin/bash ../libtool --mode=install /usr/bin/install -c 'obminimize' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obminimize' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obminimize /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obminimize /bin/bash ../libtool --mode=install /usr/bin/install -c 'obprobe' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obprobe' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obprobe /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obprobe /bin/bash ../libtool --mode=install /usr/bin/install -c 'obprop' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obprop' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obprop /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obprop /bin/bash ../libtool --mode=install /usr/bin/install -c 'obrotamer' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obrotamer' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obrotamer /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obrotamer /bin/bash ../libtool --mode=install /usr/bin/install -c 'obrotate' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obrotate' libtool: install: warning: `../src/libopenbabel.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/obrotate /build/buildd/openbabel-2.2.0/debian/tmp//usr/bin/obrotate make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/tools' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/tools' Making install in doc make[2]: Entering directory `/build/buildd/openbabel-2.2.0/doc' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/doc' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/man/man1" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1" /usr/bin/install -c -m 644 './babel.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/babel.1' /usr/bin/install -c -m 644 './obchiral.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obchiral.1' /usr/bin/install -c -m 644 './obfit.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obfit.1' /usr/bin/install -c -m 644 './obgrep.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obgrep.1' /usr/bin/install -c -m 644 './obrotate.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obrotate.1' /usr/bin/install -c -m 644 './obprop.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obprop.1' /usr/bin/install -c -m 644 './obminimize.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obminimize.1' /usr/bin/install -c -m 644 './obenergy.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obenergy.1' /usr/bin/install -c -m 644 './obrotamer.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obrotamer.1' /usr/bin/install -c -m 644 './obprobe.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obprobe.1' /usr/bin/install -c -m 644 './obgen.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obgen.1' /usr/bin/install -c -m 644 './obconformer.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/obconformer.1' /usr/bin/install -c -m 644 './roundtrip.1' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/share/man/man1/roundtrip.1' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/doc' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/doc' Making install in include make[2]: Entering directory `/build/buildd/openbabel-2.2.0/include' Making install in openbabel make[3]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel' Making install in math make[4]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[5]: Nothing to be done for `install-exec-am'. test -z "/usr/include/openbabel-2.0/openbabel/math" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/math" /usr/bin/install -c -m 644 'matrix3x3.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/math/matrix3x3.h' /usr/bin/install -c -m 644 'vector3.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/math/vector3.h' /usr/bin/install -c -m 644 'transform3d.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/math/transform3d.h' /usr/bin/install -c -m 644 'spacegroup.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/math/spacegroup.h' make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel/math' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[5]: Entering directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[5]: Nothing to be done for `install-exec-am'. test -z "/usr/include/openbabel-2.0/openbabel" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel" /usr/bin/install -c -m 644 'alias.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/alias.h' /usr/bin/install -c -m 644 'atom.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/atom.h' /usr/bin/install -c -m 644 'atomclass.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/atomclass.h' /usr/bin/install -c -m 644 'babelconfig.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/babelconfig.h' /usr/bin/install -c -m 644 'base.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/base.h' /usr/bin/install -c -m 644 'bitvec.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/bitvec.h' /usr/bin/install -c -m 644 'bond.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/bond.h' /usr/bin/install -c -m 644 'bondtyper.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/bondtyper.h' /usr/bin/install -c -m 644 'builder.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/builder.h' /usr/bin/install -c -m 644 'canon.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/canon.h' /usr/bin/install -c -m 644 'chains.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/chains.h' /usr/bin/install -c -m 644 'chiral.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/chiral.h' /usr/bin/install -c -m 644 'data.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/data.h' /usr/bin/install -c -m 644 'descriptor.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/descriptor.h' /usr/bin/install -c -m 644 'dlhandler.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/dlhandler.h' /usr/bin/install -c -m 644 'fingerprint.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/fingerprint.h' /usr/bin/install -c -m 644 'forcefield.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/forcefield.h' /usr/bin/install -c -m 644 'format.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/format.h' /usr/bin/install -c -m 644 'generic.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/generic.h' /usr/bin/install -c -m 644 'grid.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/grid.h' /usr/bin/install -c -m 644 'griddata.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/griddata.h' /usr/bin/install -c -m 644 'groupcontrib.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/groupcontrib.h' /usr/bin/install -c -m 644 'internalcoord.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/internalcoord.h' /usr/bin/install -c -m 644 'kinetics.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/kinetics.h' /usr/bin/install -c -m 644 'locale.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/locale.h' /usr/bin/install -c -m 644 'lineend.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/lineend.h' /usr/bin/install -c -m 644 'matrix.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/matrix.h' /usr/bin/install -c -m 644 'mol.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/mol.h' /usr/bin/install -c -m 644 'molchrg.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/molchrg.h' /usr/bin/install -c -m 644 'obconversion.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/obconversion.h' /usr/bin/install -c -m 644 'oberror.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/oberror.h' /usr/bin/install -c -m 644 'obiter.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/obiter.h' /usr/bin/install -c -m 644 'obmolecformat.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/obmolecformat.h' /usr/bin/install -c -m 644 'obutil.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/obutil.h' /usr/bin/install -c -m 644 'op.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/op.h' /usr/bin/install -c -m 644 'optransform.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/optransform.h' /usr/bin/install -c -m 644 'parsmart.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/parsmart.h' /usr/bin/install -c -m 644 'patty.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/patty.h' /usr/bin/install -c -m 644 'phmodel.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/phmodel.h' /usr/bin/install -c -m 644 'plugin.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/plugin.h' /usr/bin/install -c -m 644 'pointgroup.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/pointgroup.h' /usr/bin/install -c -m 644 'rand.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/rand.h' /usr/bin/install -c -m 644 'reaction.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/reaction.h' /usr/bin/install -c -m 644 'residue.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/residue.h' /usr/bin/install -c -m 644 'ring.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/ring.h' /usr/bin/install -c -m 644 'rotamer.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/rotamer.h' /usr/bin/install -c -m 644 'rotor.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/rotor.h' /usr/bin/install -c -m 644 'tokenst.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/tokenst.h' /usr/bin/install -c -m 644 'typer.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/typer.h' /usr/bin/install -c -m 644 'xml.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/xml.h' make[5]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/include/openbabel' make[3]: Entering directory `/build/buildd/openbabel-2.2.0/include' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/include' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/include/inchi" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/inchi" /usr/bin/install -c -m 644 'inchi_api.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/inchi/inchi_api.h' test -z "/usr/include/openbabel-2.0/openbabel" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel" /usr/bin/install -c -m 644 'chemdrawcdx.h' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/include/openbabel-2.0/openbabel/chemdrawcdx.h' make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/include' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/include' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/include' Making install in scripts make[2]: Entering directory `/build/buildd/openbabel-2.2.0/scripts' /usr/bin/make install-am make[3]: Entering directory `/build/buildd/openbabel-2.2.0/scripts' make[4]: Entering directory `/build/buildd/openbabel-2.2.0/scripts' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/openbabel-2.2.0/scripts' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0/scripts' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0/scripts' make[2]: Entering directory `/build/buildd/openbabel-2.2.0' make[3]: Entering directory `/build/buildd/openbabel-2.2.0' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/lib/pkgconfig" || /bin/mkdir -p "/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/pkgconfig" /usr/bin/install -c -m 644 'openbabel-2.0.pc' '/build/buildd/openbabel-2.2.0/debian/tmp//usr/lib/pkgconfig/openbabel-2.0.pc' make[3]: Leaving directory `/build/buildd/openbabel-2.2.0' make[2]: Leaving directory `/build/buildd/openbabel-2.2.0' make[1]: Leaving directory `/build/buildd/openbabel-2.2.0' dh_installdirs -popenbabel dh_installdirs -plibopenbabel-dev dh_installdirs -plibopenbabel3 dh_installdirs -ppython-openbabel cd scripts/python; python2.5 setup.py install --root /build/buildd/openbabel-2.2.0/debian/python-openbabel --install-layout=deb WARNING: Environment variable OPENBABEL_INSTALL is not set INFO: Looking for library and include files in ../../src and ../../include running install running build running build_py running build_ext running install_lib creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5 creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages copying build/lib.linux-x86_64-2.5/openbabel.py -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages copying build/lib.linux-x86_64-2.5/pybel.py -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages copying build/lib.linux-x86_64-2.5/_openbabel.so -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages byte-compiling /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages/openbabel.py to openbabel.pyc byte-compiling /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages/pybel.py to pybel.pyc running install_egg_info Writing /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.5/site-packages/openbabel-1.3.egg-info cd scripts/python; python2.6 setup.py install --root /build/buildd/openbabel-2.2.0/debian/python-openbabel --install-layout=deb WARNING: Environment variable OPENBABEL_INSTALL is not set INFO: Looking for library and include files in ../../src and ../../include running install running build running build_py running build_ext running install_lib creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6 creating /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages copying build/lib.linux-x86_64-2.6/openbabel.py -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages copying build/lib.linux-x86_64-2.6/pybel.py -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages copying build/lib.linux-x86_64-2.6/_openbabel.so -> /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages byte-compiling /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages/openbabel.py to openbabel.pyc byte-compiling /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages/pybel.py to pybel.pyc running install_egg_info Writing /build/buildd/openbabel-2.2.0/debian/python-openbabel/usr/lib/python2.6/dist-packages/openbabel-1.3.egg-info dh_installdocs -popenbabel AUTHORS README THANKS dh_installexamples -popenbabel dh_installman -popenbabel debian/man/obenergy.1 debian/man/obminimize.1 debian/man/obrotamer.1 debian/man/roundtrip.1 dh_installinfo -popenbabel dh_installmenu -popenbabel dh_installcron -popenbabel dh_installinit -popenbabel dh_installdebconf -popenbabel dh_installemacsen -popenbabel dh_installcatalogs -popenbabel dh_installpam -popenbabel dh_installlogrotate -popenbabel dh_installlogcheck -popenbabel dh_installchangelogs -popenbabel dh_installudev -popenbabel dh_lintian -popenbabel dh_install -popenbabel dh_link -popenbabel dh_installmime -popenbabel dh_installdocs -plibopenbabel-dev AUTHORS README THANKS dh_installexamples -plibopenbabel-dev dh_installman -plibopenbabel-dev dh_installinfo -plibopenbabel-dev dh_installmenu -plibopenbabel-dev dh_installcron -plibopenbabel-dev dh_installinit -plibopenbabel-dev dh_installdebconf -plibopenbabel-dev dh_installemacsen -plibopenbabel-dev dh_installcatalogs -plibopenbabel-dev dh_installpam -plibopenbabel-dev dh_installlogrotate -plibopenbabel-dev dh_installlogcheck -plibopenbabel-dev dh_installchangelogs -plibopenbabel-dev dh_installudev -plibopenbabel-dev dh_lintian -plibopenbabel-dev dh_install -plibopenbabel-dev dh_link -plibopenbabel-dev dh_installmime -plibopenbabel-dev dh_installdocs -plibopenbabel3 AUTHORS README THANKS dh_installexamples -plibopenbabel3 dh_installman -plibopenbabel3 dh_installinfo -plibopenbabel3 dh_installmenu -plibopenbabel3 dh_installcron -plibopenbabel3 dh_installinit -plibopenbabel3 dh_installdebconf -plibopenbabel3 dh_installemacsen -plibopenbabel3 dh_installcatalogs -plibopenbabel3 dh_installpam -plibopenbabel3 dh_installlogrotate -plibopenbabel3 dh_installlogcheck -plibopenbabel3 dh_installchangelogs -plibopenbabel3 dh_installudev -plibopenbabel3 dh_lintian -plibopenbabel3 dh_install -plibopenbabel3 dh_link -plibopenbabel3 dh_installmime -plibopenbabel3 dh_installdocs -ppython-openbabel AUTHORS README THANKS dh_installexamples -ppython-openbabel dh_installman -ppython-openbabel dh_installinfo -ppython-openbabel dh_installmenu -ppython-openbabel dh_installcron -ppython-openbabel dh_installinit -ppython-openbabel dh_installdebconf -ppython-openbabel dh_installemacsen -ppython-openbabel dh_installcatalogs -ppython-openbabel dh_installpam -ppython-openbabel dh_installlogrotate -ppython-openbabel dh_installlogcheck -ppython-openbabel dh_installchangelogs -ppython-openbabel dh_installudev -ppython-openbabel dh_lintian -ppython-openbabel dh_install -ppython-openbabel dh_link -ppython-openbabel dh_installmime -ppython-openbabel dh_pysupport -ppython-openbabel /usr/bin/pysupport-movemodules:8: DeprecationWarning: the md5 module is deprecated; use hashlib instead import os,os.path,md5,re,sys dh_strip -popenbabel dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: openbabel libopenbabel-dev libopenbabel3 python-openbabel dh_strip debug symbol extraction: packages to act on: openbabel dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/openbabel-dbgsym/DEBIAN/control, package openbabel-dbgsym, directory ./debian/openbabel-dbgsym pkgstriptranslations: openbabel-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `/build/buildd/openbabel-2.2.0/debian/openbabel-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `openbabel-dbgsym' in `../openbabel-dbgsym_2.2.0-2ubuntu2_amd64.ddeb'. dh_compress -popenbabel dh_fixperms -popenbabel dh_makeshlibs -popenbabel dh_strip -plibopenbabel-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: openbabel libopenbabel-dev libopenbabel3 python-openbabel dh_strip debug symbol extraction: packages to act on: libopenbabel-dev dh_strip debug symbol extraction: ignored packages: dh_compress -plibopenbabel-dev dh_fixperms -plibopenbabel-dev dh_makeshlibs -plibopenbabel-dev dh_strip -plibopenbabel3 dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: openbabel libopenbabel-dev libopenbabel3 python-openbabel dh_strip debug symbol extraction: packages to act on: libopenbabel3 dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/libopenbabel3-dbgsym/DEBIAN/control, package libopenbabel3-dbgsym, directory ./debian/libopenbabel3-dbgsym pkgstriptranslations: libopenbabel3-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `/build/buildd/openbabel-2.2.0/debian/libopenbabel3-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `libopenbabel3-dbgsym' in `../libopenbabel3-dbgsym_2.2.0-2ubuntu2_amd64.ddeb'. dh_compress -plibopenbabel3 dh_fixperms -plibopenbabel3 dh_makeshlibs -plibopenbabel3 dh_strip -ppython-openbabel dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: openbabel libopenbabel-dev libopenbabel3 python-openbabel dh_strip debug symbol extraction: packages to act on: python-openbabel dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/python-openbabel-dbgsym/DEBIAN/control, package python-openbabel-dbgsym, directory ./debian/python-openbabel-dbgsym pkgstriptranslations: python-openbabel-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `/build/buildd/openbabel-2.2.0/debian/python-openbabel-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `python-openbabel-dbgsym' in `../python-openbabel-dbgsym_2.2.0-2ubuntu2_amd64.ddeb'. dh_compress -ppython-openbabel dh_fixperms -ppython-openbabel dh_makeshlibs -ppython-openbabel dh_installdeb -popenbabel dh_perl -popenbabel dh_shlibdeps -popenbabel dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obgen debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/roundtrip" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libdl.so.2 could be avoided if "debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obgen debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/roundtrip" were not uselessly linked against it (they use none of its symbols). dh_installdeb -plibopenbabel-dev dh_perl -plibopenbabel-dev dh_shlibdeps -plibopenbabel-dev dh_installdeb -plibopenbabel3 dh_perl -plibopenbabel3 dh_shlibdeps -plibopenbabel3 dh_installdeb -ppython-openbabel dh_perl -ppython-openbabel dh_shlibdeps -ppython-openbabel dh_gencontrol -popenbabel # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/openbabel/usr/share/doc ] || \ [ ! -d debian/openbabel/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/openbabel/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/openbabel/usr/share/doc/openbabel; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/openbabel/usr/share/doc/openbabel/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in openbabel to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libopenbabel3... symlinking ./AUTHORS in openbabel to file in libopenbabel3 symlinking ./README in openbabel to file in libopenbabel3 symlinking ./THANKS in openbabel to file in libopenbabel3 symlinking ./changelog.Debian.gz in openbabel to file in libopenbabel3 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/openbabel/usr/share/gnome/help ]; then \ cd debian/openbabel && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p openbabel dh_md5sums -popenbabel dh_builddeb -popenbabel pkgstriptranslations: processing control file: ./debian/openbabel/DEBIAN/control, package openbabel, directory ./debian/openbabel pkgstriptranslations: openbabel does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/openbabel/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `openbabel' in `../openbabel_2.2.0-2ubuntu2_amd64.deb'. dh_gencontrol -plibopenbabel-dev # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libopenbabel-dev/usr/share/doc ] || \ [ ! -d debian/libopenbabel-dev/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libopenbabel-dev/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libopenbabel-dev/usr/share/doc/libopenbabel-dev; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libopenbabel-dev/usr/share/doc/libopenbabel-dev/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libopenbabel-dev to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libopenbabel3... symlinking ./AUTHORS in libopenbabel-dev to file in libopenbabel3 symlinking ./README in libopenbabel-dev to file in libopenbabel3 symlinking ./THANKS in libopenbabel-dev to file in libopenbabel3 symlinking ./changelog.Debian.gz in libopenbabel-dev to file in libopenbabel3 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libopenbabel-dev/usr/share/gnome/help ]; then \ cd debian/libopenbabel-dev && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libopenbabel-dev dh_md5sums -plibopenbabel-dev dh_builddeb -plibopenbabel-dev pkgstriptranslations: processing control file: ./debian/openbabel/DEBIAN/control, package openbabel, directory ./debian/openbabel pkgstriptranslations: openbabel does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libopenbabel-dev/DEBIAN/control, package libopenbabel-dev, directory ./debian/libopenbabel-dev pkgstriptranslations: libopenbabel-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/libopenbabel-dev/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `libopenbabel-dev' in `../libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb'. dh_gencontrol -plibopenbabel3 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libopenbabel3/usr/share/doc ] || \ [ ! -d debian/libopenbabel3/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libopenbabel3/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libopenbabel3/usr/share/doc/libopenbabel3; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libopenbabel3/usr/share/doc/libopenbabel3/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libopenbabel3 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libopenbabel3/usr/share/gnome/help ]; then \ cd debian/libopenbabel3 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libopenbabel3 dh_md5sums -plibopenbabel3 dh_builddeb -plibopenbabel3 pkgstriptranslations: processing control file: ./debian/openbabel/DEBIAN/control, package openbabel, directory ./debian/openbabel pkgstriptranslations: openbabel does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libopenbabel-dev/DEBIAN/control, package libopenbabel-dev, directory ./debian/libopenbabel-dev pkgstriptranslations: libopenbabel-dev does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libopenbabel3/DEBIAN/control, package libopenbabel3, directory ./debian/libopenbabel3 pkgstriptranslations: libopenbabel3 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/libopenbabel3/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `libopenbabel3' in `../libopenbabel3_2.2.0-2ubuntu2_amd64.deb'. dh_gencontrol -ppython-openbabel # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/python-openbabel/usr/share/doc ] || \ [ ! -d debian/python-openbabel/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/python-openbabel/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/python-openbabel/usr/share/doc/python-openbabel; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/python-openbabel/usr/share/doc/python-openbabel/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in python-openbabel to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libopenbabel3... symlinking ./AUTHORS in python-openbabel to file in libopenbabel3 symlinking ./README in python-openbabel to file in libopenbabel3 symlinking ./THANKS in python-openbabel to file in libopenbabel3 symlinking ./changelog.Debian.gz in python-openbabel to file in libopenbabel3 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/python-openbabel/usr/share/gnome/help ]; then \ cd debian/python-openbabel && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p python-openbabel dh_md5sums -ppython-openbabel dh_builddeb -ppython-openbabel pkgstriptranslations: processing control file: ./debian/openbabel/DEBIAN/control, package openbabel, directory ./debian/openbabel pkgstriptranslations: openbabel does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libopenbabel-dev/DEBIAN/control, package libopenbabel-dev, directory ./debian/libopenbabel-dev pkgstriptranslations: libopenbabel-dev does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libopenbabel3/DEBIAN/control, package libopenbabel3, directory ./debian/libopenbabel3 pkgstriptranslations: libopenbabel3 does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/python-openbabel/DEBIAN/control, package python-openbabel, directory ./debian/python-openbabel pkgstriptranslations: python-openbabel does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/python-openbabel/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `python-openbabel' in `../python-openbabel_2.2.0-2ubuntu2_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../openbabel_2.2.0-2ubuntu2_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090316-0927 Publishing debug debs. chroot-autobuild/build/buildd/openbabel_2.2.0-2ubuntu2_amd64.deb: new debian package, version 2.0. size 111750 bytes: control archive= 2074 bytes. 1736 bytes, 36 lines control 2026 bytes, 33 lines md5sums Package: openbabel Version: 2.2.0-2ubuntu2 Architecture: amd64 Maintainer: Ubuntu Core Developers Installed-Size: 476 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libopenbabel3, libstdc++6 (>= 4.2.1), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://openbabel.sourceforge.net Description: Chemical toolbox utilities Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include: . * Hydrogen addition and deletion * Support for Molecular Mechanics * Support for SMARTS molecular matching syntax * Automatic feature perception (rings, bonds, hybridization, aromaticity) * Flexible atom typer and perception of multiple bonds from atomic coordinates * Gasteiger-Marsili partial charge calculation . File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC. . This package includes the following utilities: * babel: Convert between various chemical file formats * obenergy: Calculate the energy for a molecule * obminimize: Optimize the geometry, minimize the energy for a molecule * obgrep: Molecular search program using SMARTS pattern * obprop: Print standard molecular properties * obfit: Superimpose two molecules based on a pattern * obrotamer: Generate conformer/rotamer coordinates * obchiral: Print molecular chirality information * obrotate: Rotate dihedral angle of molecules in batch mode Original-Maintainer: Debichem Team chroot-autobuild/build/buildd/libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb: new debian package, version 2.0. size 124746 bytes: control archive= 2555 bytes. 1221 bytes, 28 lines control 4635 bytes, 58 lines md5sums Package: libopenbabel-dev Source: openbabel Version: 2.2.0-2ubuntu2 Architecture: amd64 Maintainer: Ubuntu Core Developers Installed-Size: 696 Depends: libopenbabel3 (= 2.2.0-2ubuntu2) Section: libdevel Priority: optional Homepage: http://openbabel.sourceforge.net Description: Chemical toolbox library (development files) Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include: . * Hydrogen addition and deletion * Support for Molecular Mechanics * Support for SMARTS molecular matching syntax * Automatic feature perception (rings, bonds, hybridization, aromaticity) * Flexible atom typer and perception of multiple bonds from atomic coordinates * Gasteiger-Marsili partial charge calculation . File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC. . This package contains the static library and the header files. Original-Maintainer: Debichem Team chroot-autobuild/build/buildd/libopenbabel3_2.2.0-2ubuntu2_amd64.deb: new debian package, version 2.0. size 2610318 bytes: control archive= 4603 bytes. 1243 bytes, 28 lines control 9111 bytes, 125 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 29 bytes, 1 lines shlibs Package: libopenbabel3 Source: openbabel Version: 2.2.0-2ubuntu2 Architecture: amd64 Maintainer: Ubuntu Core Developers Installed-Size: 7416 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.2.1), libxml2 (>= 2.6.27), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: http://openbabel.sourceforge.net Description: Chemical toolbox library Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include: . * Hydrogen addition and deletion * Support for Molecular Mechanics * Support for SMARTS molecular matching syntax * Automatic feature perception (rings, bonds, hybridization, aromaticity) * Flexible atom typer and perception of multiple bonds from atomic coordinates * Gasteiger-Marsili partial charge calculation . File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC. . This package contains the shared library. Original-Maintainer: Debichem Team chroot-autobuild/build/buildd/python-openbabel_2.2.0-2ubuntu2_amd64.deb: new debian package, version 2.0. size 1083456 bytes: control archive= 1645 bytes. 1351 bytes, 29 lines control 1407 bytes, 16 lines md5sums 186 bytes, 7 lines * postinst #!/bin/sh 189 bytes, 7 lines * prerm #!/bin/sh Package: python-openbabel Source: openbabel Version: 2.2.0-2ubuntu2 Architecture: amd64 Maintainer: Ubuntu Core Developers Installed-Size: 4736 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libopenbabel3, libstdc++6 (>= 4.2.1), python (<< 2.7), python (>= 2.5), python-support (>= 0.7.1) Provides: python2.5-openbabel, python2.6-openbabel Section: python Priority: optional Homepage: http://openbabel.sourceforge.net Description: Chemical toolbox library (python bindings) Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It allows to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. Features include: . * Hydrogen addition and deletion * Support for Molecular Mechanics * Support for SMARTS molecular matching syntax * Automatic feature perception (rings, bonds, hybridization, aromaticity) * Flexible atom typer and perception of multiple bonds from atomic coordinates * Gasteiger-Marsili partial charge calculation . File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC. . This package contains the Python binding. Original-Maintainer: Debichem Team chroot-autobuild/build/buildd/openbabel_2.2.0-2ubuntu2_amd64.deb: drwxr-xr-x root/root 0 2009-03-16 09:25 ./ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-03-16 09:27 ./usr/share/doc/openbabel/ -rw-r--r-- root/root 10824 2008-07-03 17:26 ./usr/share/doc/openbabel/FAQ.html -rw-r--r-- root/root 267 2007-11-29 23:01 ./usr/share/doc/openbabel/README.dioxin.pov -rw-r--r-- root/root 222 2009-03-16 09:12 ./usr/share/doc/openbabel/TODO.Debian -rw-r--r-- root/root 2338 2009-03-16 09:12 ./usr/share/doc/openbabel/copyright drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/doc/openbabel/examples/ -rw-r--r-- root/root 2365 2007-11-29 23:01 ./usr/share/doc/openbabel/examples/dioxin.mol2 -rw-r--r-- root/root 2350 2007-11-29 23:01 ./usr/share/doc/openbabel/README.povray.gz drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/man/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/man/man1/ -rw-r--r-- root/root 963 2009-03-16 09:25 ./usr/share/man/man1/obrotamer.1.gz -rw-r--r-- root/root 936 2009-03-16 09:25 ./usr/share/man/man1/roundtrip.1.gz -rw-r--r-- root/root 3356 2009-03-16 09:25 ./usr/share/man/man1/babel.1.gz -rw-r--r-- root/root 876 2009-03-16 09:25 ./usr/share/man/man1/obchiral.1.gz -rw-r--r-- root/root 984 2009-03-16 09:25 ./usr/share/man/man1/obconformer.1.gz -rw-r--r-- root/root 1232 2009-03-16 09:25 ./usr/share/man/man1/obfit.1.gz -rw-r--r-- root/root 1051 2009-03-16 09:25 ./usr/share/man/man1/obgen.1.gz -rw-r--r-- root/root 1177 2009-03-16 09:25 ./usr/share/man/man1/obprobe.1.gz -rw-r--r-- root/root 1094 2009-03-16 09:25 ./usr/share/man/man1/obprop.1.gz -rw-r--r-- root/root 1538 2009-03-16 09:25 ./usr/share/man/man1/obrotate.1.gz -rw-r--r-- root/root 1013 2009-03-16 09:25 ./usr/share/man/man1/obenergy.1.gz -rw-r--r-- root/root 1147 2009-03-16 09:25 ./usr/share/man/man1/obminimize.1.gz -rw-r--r-- root/root 1396 2009-03-16 09:25 ./usr/share/man/man1/obgrep.1.gz drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/povray/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/povray/include/ -rw-r--r-- root/root 31870 2007-11-29 23:01 ./usr/share/povray/include/babel31.inc drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/bin/ -rwxr-xr-x root/root 31248 2009-03-16 09:25 ./usr/bin/babel -rwxr-xr-x root/root 18936 2009-03-16 09:25 ./usr/bin/obchiral -rwxr-xr-x root/root 18920 2009-03-16 09:25 ./usr/bin/obconformer -rwxr-xr-x root/root 23096 2009-03-16 09:25 ./usr/bin/obenergy -rwxr-xr-x root/root 23072 2009-03-16 09:25 ./usr/bin/obfit -rwxr-xr-x root/root 18960 2009-03-16 09:25 ./usr/bin/obgen -rwxr-xr-x root/root 18928 2009-03-16 09:25 ./usr/bin/obgrep -rwxr-xr-x root/root 27232 2009-03-16 09:25 ./usr/bin/obminimize -rwxr-xr-x root/root 23080 2009-03-16 09:25 ./usr/bin/obprobe -rwxr-xr-x root/root 23080 2009-03-16 09:25 ./usr/bin/obprop -rwxr-xr-x root/root 18984 2009-03-16 09:25 ./usr/bin/obrotamer -rwxr-xr-x root/root 18904 2009-03-16 09:25 ./usr/bin/obrotate -rwxr-xr-x root/root 18896 2009-03-16 09:25 ./usr/bin/roundtrip lrwxrwxrwx root/root 0 2009-03-16 09:27 ./usr/share/doc/openbabel/AUTHORS -> ../libopenbabel3/AUTHORS lrwxrwxrwx root/root 0 2009-03-16 09:27 ./usr/share/doc/openbabel/README -> ../libopenbabel3/README lrwxrwxrwx root/root 0 2009-03-16 09:27 ./usr/share/doc/openbabel/THANKS -> ../libopenbabel3/THANKS lrwxrwxrwx root/root 0 2009-03-16 09:27 ./usr/share/doc/openbabel/changelog.Debian.gz -> ../libopenbabel3/changelog.Debian.gz chroot-autobuild/build/buildd/libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb: drwxr-xr-x root/root 0 2009-03-16 09:25 ./ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/ drwxr-xr-x root/root 0 2009-03-16 09:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-03-16 09:27 ./usr/share/doc/libopenbabel-dev/ -rw-r--r-- root/root 2338 2009-03-16 09:12 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amd64 Version: 2.2.0-2ubuntu2 Distribution: jaunty Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Alessio Treglia Description: libopenbabel-dev - Chemical toolbox library (development files) libopenbabel3 - Chemical toolbox library openbabel - Chemical toolbox utilities python-openbabel - Chemical toolbox library (python bindings) Launchpad-Bugs-Fixed: 342761 Changes: openbabel (2.2.0-2ubuntu2) jaunty; urgency=low . * Python 2.6 transition: (LP: #342761) - debian/rules: + Include /usr/share/python/python.mk. + Add py_setup_install_args macro to setup.py install. Checksums-Sha1: b7eded37b736bfce5ccd567ec32097854aec559f 111750 openbabel_2.2.0-2ubuntu2_amd64.deb b748c676f981f4b6fbb1bfd394351b313f5f57e6 124746 libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb b47ebe2ed10c1844965cf19c388ba6cd4c3f68e9 2610318 libopenbabel3_2.2.0-2ubuntu2_amd64.deb e2ca1e88e298217ca7e54bac46967a09036d3833 1083456 python-openbabel_2.2.0-2ubuntu2_amd64.deb Checksums-Sha256: a64313545ce269b00ec7eaf42e4b425f506a88787532c9b2c57aa043ea9ff224 111750 openbabel_2.2.0-2ubuntu2_amd64.deb c8b05896601f1c99a31a81fb09fa0101cb5e2dd4ba89140e96f9695cea10f380 124746 libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb 0a776028c725478fab472b0ea62b3e9189e30865660bcd827d9ef26e606f292a 2610318 libopenbabel3_2.2.0-2ubuntu2_amd64.deb 0ba8b528ab865f84113db675afe96c9754f2ef0497045a1f38b499ca7794d523 1083456 python-openbabel_2.2.0-2ubuntu2_amd64.deb Files: b0a1d3c54c27d6c09432709e16652474 111750 science optional openbabel_2.2.0-2ubuntu2_amd64.deb 43af02980f43ff0efe46c1de89db8732 124746 libdevel optional libopenbabel-dev_2.2.0-2ubuntu2_amd64.deb 5ae77a36de94e378cbbc7d56ea3fa2e3 2610318 libs optional libopenbabel3_2.2.0-2ubuntu2_amd64.deb 71fac33a62f7af43d41c0da62325b843 1083456 python optional python-openbabel_2.2.0-2ubuntu2_amd64.deb Original-Maintainer: Debichem Team ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/openbabel-2.2.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-905718-2065354/chroot-autobuild --purge groff-base libglib2.0-0 mime-support m4 readline-common gettext file zlib1g-dev libhtml-parser-perl intltool python2.5 libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf libboost1.35-dev python2.6 libxml-parser-perl libcroco3 libicu38 libhtml-tagset-perl python-support libxml2 netbase libpython2.6 automake python-all-dev python-all python-dev man-db libssl0.9.8 intltool-debian libxml2-dev libboost-serialization1.35.0 cdbs html2text gettext-base python2.6-dev debhelper python libboost-serialization1.35-dev libmagic1 libreadline5 libexpat1 libsqlite3-0 python2.5-dev bsdmainutils fdupes autoconf libncursesw5 (Reading database ... 17393 files and directories currently installed.) 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