openms 2.4.0-real-1 source package in Ubuntu

Changelog

openms (2.4.0-real-1) unstable; urgency=low

  * Really released 2.4.0 version with Qt5 port merged;

  * d/control: update website url to http://www.openms.de (thanks to Adrian Bunk
    <email address hidden>; Closes: #906561);

  * d/copyright: update website url and copyright years.
    add Design Science License (Thanks to Dmitry Smirnov
    <email address hidden>, Closes: #822412);

  * d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev
    (>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks
    to Adrian Bunk <email address hidden>, Closes: #906666);

  * Use secure copyright file specification URI.
  * Trim trailing whitespace.
    Jelmer Vernooij <email address hidden>  Mon, 15 Oct 2018 06:59:37 +0000

  * debian/control: Change "Conflicts:" to "Breaks:" (Closes:
    #816562);

 -- Filippo Rusconi <email address hidden>  Sat, 17 Nov 2018 17:24:48 +0100

Upload details

Uploaded by:
Debichem Team on 2018-11-18
Uploaded to:
Sid
Original maintainer:
Debichem Team
Architectures:
any all
Section:
misc
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Disco release on 2018-11-24 universe misc

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File Size SHA-256 Checksum
openms_2.4.0-real-1.dsc 2.9 KiB 4cde603e3b74a18660744b339830754976192e20f8627fc53880eec497edeb73
openms_2.4.0-real.orig.tar.gz 175.7 MiB 9dc0a2ec0c12a3b8892f50a981656ee924586703c1c404b10a61c0a0176eb8ae
openms_2.4.0-real-1.debian.tar.xz 15.8 KiB 63883c5c12b9c53b8837a977e203d69a6dfca49856ceaeb12453344fc026d7db

Available diffs

No changes file available.

Binary packages built by this source

libopenms-dev: library for LC/MS data management and analysis - dev files

 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package ships the library development files.

libopenms2.4.0: library for LC/MS data management and analysis - runtime

 OpenMS is a library for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.

libopenms2.4.0-dbgsym: debug symbols for libopenms2.4.0
openms: package for LC/MS data management and analysis

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem.
 .
 This package is a metapackage that depends on both the libopenms
 library package (libOpenMS and libOpenMS_GUI) and the OpenMS
 Proteomic Pipeline (topp) package.

openms-common: package for LC/MS data management and analysis - shared data

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings data shared by the different binaries of the
 OpenMS software package (libOpenMS and libOpenMS_GUI libraries and
 the OpenMS Proteomic Pipeline binary tools).

openms-doc: package for LC/MS data management and analysis - documentation

 OpenMS is a package for LC/MS data management and analysis. OpenMS
 offers an infrastructure for the development of mass
 spectrometry-related software and powerful 2D and 3D visualization
 solutions.
 .
 OpenMS offers analyses for various quantitation protocols, including
 label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
 .
 It provides built-in algorithms for de-novo identification and
 database search, as well as adapters to other state-of-the art tools
 like X!Tandem, Mascot, OMSSA…
 .
 OpenMS supports the Proteomics Standard Initiative (PSI) formats for
 MS data and supports easy integration of tools into workflow engines
 like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
 and a unified parameter handling.
 .
 This package brings full documentation for both the libopenms library
 package (libOpenMS and libOpenMS_GUI) and the OpenMS Proteomic
 Pipeline (topp) package.

topp: set of programs implementing The OpenMS Proteomic Pipeline

 TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
 of HPLC/MS data. It consists of a set of numerous small applications
 that can be chained together to create analysis pipelines tailored
 for a specific problem. The applications make use of the libopenms
 library. Some examples of these applications are :
 .
   - TOPPView: A viewer for mass spectrometry data.
   - TOPPAS: An assistant for GUI-driven TOPP workflow design.
   - DTAExtractor: Extracts spectra of an MS run file to several
     files in DTA format.
   - FileConverter: Converts between different MS file formats.
   - FileFilter: Extracts or manipulates portions of data from peak,
     feature or consensus feature files.
   - SpectraMerger: Merges spectra from an LC/MS map, either by
     precursor or by RT blocks.
   - BaselineFilter: Removes the baseline from profile spectra using a
     top-hat filter.
   - InternalCalibration: Applies an internal calibration.
   - PTModel: Trains a model for the prediction of proteotypic
     peptides from a training set.
   - RTPredict: Predicts retention times for peptides using a model
     trained by RTModel.
   - ExecutePipeline: Executes workflows created by TOPPAS.

topp-dbgsym: debug symbols for topp