https://launchpad.net/ubuntu/+source/openstructure/2.3.0~rc-1/+build/23077702 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-010 4.15.0-166-generic #174-Ubuntu SMP Wed Dec 8 19:07:44 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_206~519~ubuntu18.04.1 python3-lpbuildd_206~519~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 19 Jan 23:12:36 ntpdate[2069]: adjust time server 10.211.37.1 offset -0.003191 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23077702 --image-type chroot /home/buildd/filecache-default/b0c128df17a460089eca69348f06144377489985 Creating target for build PACKAGEBUILD-23077702 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23077702 Starting target for build PACKAGEBUILD-23077702 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23077702 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23077702 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23077702 Updating target for build PACKAGEBUILD-23077702 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1407 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5590 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [168 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [59.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [687 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [250 kB] Fetched 23.0 MB in 14s (1683 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libssl1.1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 ca-certificates cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd tzdata usrmerge util-linux 116 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 84.9 MB of archives. After this operation, 354 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam0g amd64 1.4.0-10ubuntu2 [61.5 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt-dev amd64 1:4.4.27-1 [112 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt1 amd64 1:4.4.27-1 [82.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu2 [63.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 debianutils amd64 5.5-1ubuntu1 [107 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 bash amd64 5.1-6ubuntu1 [769 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdutils amd64 1:2.37.2-4ubuntu1 [80.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 libgpg-error0 amd64 1.43-3 [69.7 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcrypt20 amd64 1.9.4-3ubuntu2 [515 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 bzip2 amd64 1.0.8-5 [34.8 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-1.0 amd64 1.0.8-5 [34.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libcc1-0 amd64 11.2.0-14ubuntu1 [53.6 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libctf0 amd64 2.37.50.20220119-0ubuntu1 [103 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libctf-nobfd0 amd64 2.37.50.20220119-0ubuntu1 [106 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.37.50.20220119-0ubuntu1 [2334 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libbinutils amd64 2.37.50.20220119-0ubuntu1 [660 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 binutils-common amd64 2.37.50.20220119-0ubuntu1 [221 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 binutils amd64 2.37.50.20220119-0ubuntu1 [3196 B] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11-base amd64 11.2.0-14ubuntu1 [21.3 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-s1 amd64 11.2.0-14ubuntu1 [45.5 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libgomp1 amd64 11.2.0-14ubuntu1 [117 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libitm1 amd64 11.2.0-14ubuntu1 [30.0 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libatomic1 amd64 11.2.0-14ubuntu1 [9998 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libasan6 amd64 11.2.0-14ubuntu1 [2284 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 liblsan0 amd64 11.2.0-14ubuntu1 [976 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libtsan0 amd64 11.2.0-14ubuntu1 [2260 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libubsan1 amd64 11.2.0-14ubuntu1 [921 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libquadmath0 amd64 11.2.0-14ubuntu1 [154 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 g++-11 amd64 11.2.0-14ubuntu1 [11.4 MB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++-11-dev amd64 11.2.0-14ubuntu1 [2103 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-11-dev amd64 11.2.0-14ubuntu1 [2532 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11 amd64 11.2.0-14ubuntu1 [20.1 MB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 cpp-11 amd64 11.2.0-14ubuntu1 [9961 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++6 amd64 11.2.0-14ubuntu1 [655 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgmp10 amd64 2:6.2.1+dfsg-3ubuntu1 [250 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 libssl3 amd64 3.0.1-0ubuntu1 [1898 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libblkid1 amd64 2.37.2-4ubuntu1 [103 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libuuid1 amd64 2.37.2-4ubuntu1 [23.8 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libcryptsetup12 amd64 2:2.4.2-1ubuntu4 [208 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libffi8 amd64 3.4.2-4 [22.3 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libp11-kit0 amd64 0.24.0-6 [252 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.18.0-4 [42.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 libgnutls30 amd64 3.7.2-5ubuntu1 [956 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-sysv amd64 249.5-2ubuntu4 [10.5 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-timesyncd amd64 249.5-2ubuntu4 [30.9 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 libapparmor1 amd64 3.0.3-0ubuntu5 [38.0 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu4 [19.8 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 libkmod2 amd64 29-1ubuntu1 [48.0 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-8-0 amd64 10.39-3 [220 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libselinux1 amd64 3.3-1build1 [74.5 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libmount1 amd64 2.37.2-4ubuntu1 [122 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libseccomp2 amd64 2.5.2-2ubuntu2 [48.3 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 login amd64 1:4.8.1-2ubuntu1 [188 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 util-linux amd64 2.37.2-4ubuntu1 [1063 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 mount amd64 2.37.2-4ubuntu1 [114 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd amd64 249.5-2ubuntu4 [4544 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main amd64 libsystemd0 amd64 249.5-2ubuntu4 [318 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 libudev1 amd64 249.5-2ubuntu4 [78.0 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 libxxhash0 amd64 0.8.1-1 [27.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 libapt-pkg6.0 amd64 2.3.14 [905 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 dpkg amd64 1.21.1ubuntu1 [1254 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-3 [91.8 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 grep amd64 3.7-1 [156 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libncurses6 amd64 6.3-2 [111 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libncursesw6 amd64 6.3-2 [149 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtinfo6 amd64 6.3-2 [104 kB] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ncurses-bin amd64 6.3-2 [184 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 sed amd64 4.8-1ubuntu1 [188 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 init-system-helpers all 1.61 [39.3 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ncurses-base all 6.3-2 [20.1 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgv amd64 2.2.27-3ubuntu1 [137 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 apt amd64 2.3.14 [1387 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 libsepol2 amd64 3.3-1 [281 kB] Get:79 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsemanage2 amd64 3.3-1build1 [92.4 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main amd64 passwd amd64 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http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 fakeroot amd64 1.27-1ubuntu1 [60.3 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg amd64 2.2.27-3ubuntu1 [517 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgconf amd64 2.2.27-3ubuntu1 [94.4 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg-agent amd64 2.2.27-3ubuntu1 [209 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm-compat4 amd64 1.22-1 [6450 B] Get:117 http://ftpmaster.internal/ubuntu jammy/main amd64 linux-libc-dev amd64 5.15.0-17.17 [1255 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main amd64 lockfile-progs amd64 0.1.19 [10.0 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main amd64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.9 MB in 8s (10.4 MB/s) (Reading database ... 13258 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu2_amd64.deb ... Unpacking libpam0g:amd64 (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam0g:amd64 (1.4.0-10ubuntu2) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.27-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.27-1) over (1:4.4.18-4ubuntu2) ... Preparing to unpack .../libcrypt1_1%3a4.4.27-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.27-1) over (1:4.4.18-4ubuntu2) ... Setting up libcrypt1:amd64 (1:4.4.27-1) ... (Reading database ... 13257 files and directories currently installed.) Preparing to unpack .../base-files_12ubuntu2_amd64.deb ... 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Setting up libctf-nobfd0:amd64 (2.37.50.20220119-0ubuntu1) ... Setting up libgomp1:amd64 (11.2.0-14ubuntu1) ... Setting up bzip2 (1.0.8-5) ... Setting up libfakeroot:amd64 (1.27-1ubuntu1) ... Setting up libasan6:amd64 (11.2.0-14ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 19 23:14:27 UTC 2022. Universal Time is now: Wed Jan 19 23:14:27 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.27-1ubuntu1) ... Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:amd64 (6.3-2) ... Setting up libquadmath0:amd64 (11.2.0-14ubuntu1) ... Setting up libmpc3:amd64 (1.2.1-1) ... Setting up systemd-timesyncd (249.5-2ubuntu4) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:amd64 (11.2.0-14ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:amd64 (1.46.5-2ubuntu1) ... Setting up libncursesw6:amd64 (6.3-2) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up logsave (1.46.5-2ubuntu1) ... Setting up libubsan1:amd64 (11.2.0-14ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up libbinutils:amd64 (2.37.50.20220119-0ubuntu1) ... Setting up libisl23:amd64 (0.24-2) ... Setting up openssl (3.0.1-0ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1) ... Setting up libcc1-0:amd64 (11.2.0-14ubuntu1) ... Setting up liblsan0:amd64 (11.2.0-14ubuntu1) ... Setting up libitm1:amd64 (11.2.0-14ubuntu1) ... Setting up libgdbm6:amd64 (1.22-1) ... Setting up libtsan0:amd64 (11.2.0-14ubuntu1) ... Setting up libctf0:amd64 (2.37.50.20220119-0ubuntu1) ... Setting up cpp-11 (11.2.0-14ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up libreadline8:amd64 (8.1.2-1) ... Setting up e2fsprogs (1.46.5-2ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:amd64 (1.22-1) ... Setting up libgcc-11-dev:amd64 (11.2.0-14ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu1) ... Setting up gpg (2.2.27-3ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.37.50.20220119-0ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu1) ... Setting up binutils (2.37.50.20220119-0ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-14ubuntu1) ... Setting up gcc-11 (11.2.0-14ubuntu1) ... Setting up g++-11 (11.2.0-14ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23077702 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-23077702 --arch=amd64 --dist=jammy-proposed --nolog -A 'openstructure_2.3.0~rc-1.dsc' Initiating build PACKAGEBUILD-23077702 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-166-generic #174-Ubuntu SMP Wed Dec 8 19:07:44 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-010.buildd +==============================================================================+ | openstructure 2.3.0~rc-1 (amd64) Wed, 19 Jan 2022 23:14:39 +0000 | +==============================================================================+ Package: openstructure Version: 2.3.0~rc-1 Source Version: 2.3.0~rc-1 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23077702/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- openstructure_2.3.0~rc-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/openstructure-VIjlzS/openstructure-2.3.0~rc' with '<>' I: NOTICE: Log filtering will replace 'build/openstructure-VIjlzS' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-QVLezw/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-QVLezw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-QVLezw/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-QVLezw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-QVLezw/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-QVLezw/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (35.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-QVLezw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (51.2 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev, libopenmm-plugins, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, sip-dev, voronota Filtered Build-Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev, libopenmm-plugins, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, sip-dev, voronota dpkg-deb: building package 'sbuild-build-depends-openstructure-dummy' in '/<>/resolver-QVLezw/apt_archive/sbuild-build-depends-openstructure-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-openstructure-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-QVLezw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-QVLezw/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-QVLezw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-QVLezw/apt_archive ./ Sources [653 B] Get:5 copy:/<>/resolver-QVLezw/apt_archive ./ Packages [714 B] Fetched 2330 B in 0s (49.9 kB/s) Reading package lists... Reading package lists... Install openstructure build dependencies (apt-based resolver) ------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libssl1.1 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils clustalw cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dssp dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base gfortran-11 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-container-dev libboost-container1.74-dev libboost-container1.74.0 libboost-context-dev libboost-context1.74-dev libboost-context1.74.0 libboost-coroutine-dev libboost-coroutine1.74-dev libboost-coroutine1.74.0 libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-exception-dev libboost-exception1.74-dev libboost-fiber-dev libboost-fiber1.74-dev libboost-fiber1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.74-dev libboost-graph-parallel1.74.0 libboost-graph1.74-dev libboost-graph1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-locale-dev libboost-locale1.74-dev libboost-locale1.74.0 libboost-log-dev libboost-log1.74-dev libboost-log1.74.0 libboost-math-dev libboost-math1.74-dev libboost-math1.74.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.74-dev libboost-mpi-python1.74.0 libboost-mpi1.74-dev libboost-mpi1.74.0 libboost-nowide-dev libboost-nowide1.74-dev libboost-nowide1.74.0 libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-random-dev libboost-random1.74-dev libboost-random1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization-dev libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-stacktrace-dev libboost-stacktrace1.74-dev libboost-stacktrace1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost-test-dev libboost-test1.74-dev libboost-test1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost-timer-dev libboost-timer1.74-dev libboost-timer1.74.0 libboost-tools-dev libboost-type-erasure-dev libboost-type-erasure1.74-dev libboost-type-erasure1.74.0 libboost-wave-dev libboost-wave1.74-dev libboost-wave1.74.0 libboost1.74-dev libboost1.74-tools-dev libbrotli1 libbsd0 libcbor0.6 libcifpp-data libcifpp1 libcups2 libcurl3-gnutls libcurl4 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgfortran-11-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu-dev libicu67 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp25 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libllvm13 libltdl-dev libltdl7 liblzma-dev libmagic-mgc libmagic1 libmd0 libmd4c0 libmpdec3 libmtdev1 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopengl-dev libopengl0 libopenjp2-7 libopenmm-dev libopenmm-plugins libopenmm7.6 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre2-16-0 libpipeline1 libpmix-dev libpmix2 libpng-dev libpsl5 libpsm-infinipath1 libpsm2-2 libpthread-stubs0-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libraqm0 librdmacm1 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-dev libssh-4 libsub-override-perl libtcl8.6 libtiff-dev libtiff5 libtiffxx5 libtk8.6 libtool libuchardet0 libucx0 libuv1 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxxf86vm1 m4 man-db media-types mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing python3-pyqt5 python3-pyqt5.sip python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser shared-mime-info sip-dev tk8.6-blt2.5 ucf unicode-data voronota x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo clustalx seaview cmake-doc ninja-build cmake-format dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff lrzip libboost-doc graphviz libboost1.74-doc gccxml libboost-contract1.74-dev libmpfrc++-dev libntl-dev xsltproc doxygen docbook-xml docbook-xsl default-jdk fop cups-common libeigen3-doc libfftw3-doc libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs liblcms2-utils libtool-doc liblzma-doc openmpi-doc pciutils libthai0 qt5-image-formats-plugins qtwayland5 lm-sensors sqlite3-doc tcl8.6 tk8.6 gcj-jdk libx11-doc libxcb-doc libxext-doc m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest python-pil-doc python3-setuptools python-pyparsing-doc python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc default-libmysqlclient-dev firebird-dev libpq-dev unixodbc-dev python-sip-doc Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data xdg-user-dirs javascript-common libldap-common libcoarrays-openmpi-dev libpng-tools publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules mesa-vulkan-drivers | vulkan-icd libwacom-bin xauth libmail-sendmail-perl python3-bs4 python3-html5lib python3-olefile python3-sip-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils clustalw cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-python dh-strip-nondeterminism dssp dwz emacsen-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base gfortran-11 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-all-dev libboost-atomic-dev libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono-dev libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-container-dev libboost-container1.74-dev libboost-container1.74.0 libboost-context-dev libboost-context1.74-dev libboost-context1.74.0 libboost-coroutine-dev libboost-coroutine1.74-dev libboost-coroutine1.74.0 libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-exception-dev libboost-exception1.74-dev libboost-fiber-dev libboost-fiber1.74-dev libboost-fiber1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-graph-dev libboost-graph-parallel-dev libboost-graph-parallel1.74-dev libboost-graph-parallel1.74.0 libboost-graph1.74-dev libboost-graph1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-locale-dev libboost-locale1.74-dev libboost-locale1.74.0 libboost-log-dev libboost-log1.74-dev libboost-log1.74.0 libboost-math-dev libboost-math1.74-dev libboost-math1.74.0 libboost-mpi-dev libboost-mpi-python-dev libboost-mpi-python1.74-dev libboost-mpi-python1.74.0 libboost-mpi1.74-dev libboost-mpi1.74.0 libboost-nowide-dev libboost-nowide1.74-dev libboost-nowide1.74.0 libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-random-dev libboost-random1.74-dev libboost-random1.74.0 libboost-regex-dev libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization-dev libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-stacktrace-dev libboost-stacktrace1.74-dev libboost-stacktrace1.74.0 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python3-pyqt5 python3-pyqt5.sip python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-minimal qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser sbuild-build-depends-openstructure-dummy shared-mime-info sip-dev tk8.6-blt2.5 ucf unicode-data voronota x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 427 newly installed, 0 to remove and 0 not upgraded. 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11.2.0-14ubuntu1 [842 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main amd64 gfortran-11 amd64 11.2.0-14ubuntu1 [11.2 MB] Get:113 http://ftpmaster.internal/ubuntu jammy/main amd64 libnl-3-200 amd64 3.4.0-1build3 [58.6 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main amd64 libnl-route-3-200 amd64 3.4.0-1build3 [168 kB] Get:115 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libibverbs1 amd64 38.0-1build1 [69.4 kB] Get:116 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ibverbs-providers amd64 38.0-1build1 [340 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main amd64 icu-devtools amd64 67.1-7ubuntu1 [194 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main amd64 libavahi-common-data amd64 0.8-5ubuntu4 [24.2 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main amd64 libavahi-common3 amd64 0.8-5ubuntu4 [23.8 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main amd64 libavahi-client3 amd64 0.8-5ubuntu4 [28.0 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main amd64 libblas3 amd64 3.10.0-2ubuntu1 [228 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost1.74-dev amd64 1.74.0-14ubuntu1 [9617 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-dev amd64 1.74.0.3ubuntu6 [3452 B] Get:124 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost1.74-tools-dev amd64 1.74.0-14ubuntu1 [1351 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-tools-dev amd64 1.74.0.3ubuntu6 [3386 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-atomic1.74.0 amd64 1.74.0-14ubuntu1 [224 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-atomic1.74-dev amd64 1.74.0-14ubuntu1 [222 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-atomic-dev amd64 1.74.0.3ubuntu6 [3504 B] Get:129 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-chrono1.74.0 amd64 1.74.0-14ubuntu1 [232 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-chrono1.74-dev amd64 1.74.0-14ubuntu1 [239 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-chrono-dev amd64 1.74.0.3ubuntu6 [3814 B] Get:132 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-container1.74.0 amd64 1.74.0-14ubuntu1 [246 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-container1.74-dev amd64 1.74.0-14ubuntu1 [254 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-container-dev amd64 1.74.0.3ubuntu6 [3672 B] Get:135 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-date-time1.74.0 amd64 1.74.0-14ubuntu1 [221 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-serialization1.74.0 amd64 1.74.0-14ubuntu1 [328 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-serialization1.74-dev amd64 1.74.0-14ubuntu1 [375 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-date-time1.74-dev amd64 1.74.0-14ubuntu1 [226 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-system1.74.0 amd64 1.74.0-14ubuntu1 [221 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-system1.74-dev amd64 1.74.0-14ubuntu1 [218 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-thread1.74.0 amd64 1.74.0-14ubuntu1 [262 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-thread1.74-dev amd64 1.74.0-14ubuntu1 [271 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-context1.74.0 amd64 1.74.0-14ubuntu1 [223 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-context1.74-dev amd64 1.74.0-14ubuntu1 [220 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-context-dev amd64 1.74.0.3ubuntu6 [3414 B] Get:146 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-coroutine1.74.0 amd64 1.74.0-14ubuntu1 [235 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-coroutine1.74-dev amd64 1.74.0-14ubuntu1 [244 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-coroutine-dev amd64 1.74.0.3ubuntu6 [3476 B] Get:149 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-date-time-dev amd64 1.74.0.3ubuntu6 [3204 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-exception1.74-dev amd64 1.74.0-14ubuntu1 [216 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-exception-dev amd64 1.74.0.3ubuntu6 [3184 B] Get:152 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-14ubuntu1 [265 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-14ubuntu1 [287 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-fiber1.74.0 amd64 1.74.0-14ubuntu1 [242 kB] Get:155 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-fiber1.74-dev amd64 1.74.0-14ubuntu1 [254 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-fiber-dev amd64 1.74.0.3ubuntu6 [3628 B] Get:157 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-filesystem-dev amd64 1.74.0.3ubuntu6 [3234 B] Get:158 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-regex1.74.0 amd64 1.74.0-14ubuntu1 [511 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph1.74.0 amd64 1.74.0-14ubuntu1 [304 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu-dev amd64 67.1-7ubuntu1 [11.1 MB] Get:161 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-regex1.74-dev amd64 1.74.0-14ubuntu1 [595 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-test1.74.0 amd64 1.74.0-14ubuntu1 [445 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-test1.74-dev amd64 1.74.0-14ubuntu1 [564 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph1.74-dev amd64 1.74.0-14ubuntu1 [335 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph-dev amd64 1.74.0.3ubuntu6 [3300 B] Get:166 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1build2 [94.1 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1build2 [7652 B] Get:168 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [170 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpsm2-2 amd64 11.2.185-1 [182 kB] Get:170 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 librdmacm1 amd64 38.0-1build1 [71.1 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe amd64 libfabric1 amd64 1.11.0-3 [558 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhwloc15 amd64 2.7.0-1 [159 kB] Get:173 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcurl3-gnutls amd64 7.81.0-1 [282 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/main amd64 libpciaccess0 amd64 0.16-3 [19.1 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/main amd64 libxnvctrl0 amd64 470.57.01-0ubuntu3 [11.3 kB] Get:176 http://ftpmaster.internal/ubuntu jammy/universe amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [39.1 kB] Get:177 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhwloc-plugins amd64 2.7.0-1 [15.6 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpmix2 amd64 4.1.1~rc6-1ubuntu1 [603 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/universe amd64 libucx0 amd64 1.12.0-1 [890 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmpi3 amd64 4.1.2-1ubuntu1 [2594 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi1.74.0 amd64 1.74.0-14ubuntu1 [259 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph-parallel1.74.0 amd64 1.74.0-14ubuntu1 [266 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph-parallel1.74-dev amd64 1.74.0-14ubuntu1 [277 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-graph-parallel-dev amd64 1.74.0.3ubuntu6 [3322 B] Get:185 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-iostreams1.74-dev amd64 1.74.0-14ubuntu1 [252 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-iostreams-dev amd64 1.74.0.3ubuntu6 [3194 B] Get:187 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-locale1.74.0 amd64 1.74.0-14ubuntu1 [413 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-locale1.74-dev amd64 1.74.0-14ubuntu1 [593 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-locale-dev amd64 1.74.0.3ubuntu6 [3524 B] Get:190 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-log1.74.0 amd64 1.74.0-14ubuntu1 [591 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-log1.74-dev amd64 1.74.0-14ubuntu1 [853 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-log-dev amd64 1.74.0.3ubuntu6 [3400 B] Get:193 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-math1.74.0 amd64 1.74.0-14ubuntu1 [424 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-math1.74-dev amd64 1.74.0-14ubuntu1 [621 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-math-dev amd64 1.74.0.3ubuntu6 [3400 B] Get:196 http://ftpmaster.internal/ubuntu jammy/universe amd64 openmpi-common all 4.1.2-1ubuntu1 [162 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/main amd64 libnl-3-dev amd64 3.4.0-1build3 [99.8 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/main amd64 libnl-route-3-dev amd64 3.4.0-1build3 [188 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libibverbs-dev amd64 38.0-1build1 [628 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/main amd64 libnuma-dev amd64 2.0.14-3ubuntu1 [35.9 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/main amd64 libltdl7 amd64 2.4.6-15build1 [39.7 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/main amd64 libltdl-dev amd64 2.4.6-15build1 [167 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhwloc-dev amd64 2.7.0-1 [256 kB] Get:204 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-2.1-7 amd64 2.1.12-stable-1build2 [148 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-1build2 [65.4 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-1build2 [15.7 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/main amd64 libevent-dev amd64 2.1.12-stable-1build2 [278 kB] Get:208 http://ftpmaster.internal/ubuntu jammy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpmix-dev amd64 4.1.1~rc6-1ubuntu1 [800 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:211 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-jquery-ui all 1.13.0+dfsg-1 [253 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/universe amd64 openmpi-bin amd64 4.1.2-1ubuntu1 [116 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmpi-dev amd64 4.1.2-1ubuntu1 [867 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/universe amd64 mpi-default-dev amd64 1.14 [3698 B] Get:215 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi1.74-dev amd64 1.74.0-14ubuntu1 [285 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi-dev amd64 1.74.0.3ubuntu6 [3280 B] Get:217 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-python1.74.0 amd64 1.74.0-14ubuntu1 [316 kB] Get:218 http://ftpmaster.internal/ubuntu jammy/universe amd64 mpi-default-bin amd64 1.14 [2898 B] Get:219 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi-python1.74.0 amd64 1.74.0-14ubuntu1 [351 kB] Get:220 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi-python1.74-dev amd64 1.74.0-14ubuntu1 [225 kB] Get:221 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-mpi-python-dev amd64 1.74.0.3ubuntu6 [3336 B] Get:222 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-numpy1.74.0 amd64 1.74.0-14ubuntu1 [229 kB] Get:223 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-numpy1.74-dev amd64 1.74.0-14ubuntu1 [233 kB] Get:224 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-numpy-dev amd64 1.74.0.3ubuntu6 [3238 B] Get:225 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-program-options1.74-dev amd64 1.74.0-14ubuntu1 [380 kB] Get:226 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-program-options-dev amd64 1.74.0.3ubuntu6 [3204 B] Get:227 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3.10 amd64 3.10.2-1 [1948 kB] Get:228 http://ftpmaster.internal/ubuntu jammy/main amd64 libexpat1-dev amd64 2.4.3-1 [147 kB] Get:229 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3.10-dev amd64 3.10.2-1 [4683 kB] Get:230 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3-dev amd64 3.10.1-0ubuntu1 [7572 B] Get:231 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3.10-dev amd64 3.10.2-1 [508 kB] Get:232 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-underscore all 1.9.1~dfsg-4 [103 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:234 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-dev amd64 3.10.1-0ubuntu1 [26.0 kB] Get:235 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-python1.74-dev amd64 1.74.0-14ubuntu1 [325 kB] Get:236 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-python-dev amd64 1.74.0.3ubuntu6 [3488 B] Get:237 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-random1.74.0 amd64 1.74.0-14ubuntu1 [231 kB] Get:238 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-random1.74-dev amd64 1.74.0-14ubuntu1 [231 kB] Get:239 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-random-dev amd64 1.74.0.3ubuntu6 [3206 B] Get:240 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-regex-dev amd64 1.74.0.3ubuntu6 [3462 B] Get:241 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-serialization-dev amd64 1.74.0.3ubuntu6 [3416 B] Get:242 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-stacktrace1.74.0 amd64 1.74.0-14ubuntu1 [267 kB] Get:243 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-stacktrace1.74-dev amd64 1.74.0-14ubuntu1 [232 kB] Get:244 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-stacktrace-dev amd64 1.74.0.3ubuntu6 [3214 B] Get:245 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-system-dev amd64 1.74.0.3ubuntu6 [3346 B] Get:246 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-test-dev amd64 1.74.0.3ubuntu6 [3228 B] Get:247 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-thread-dev amd64 1.74.0.3ubuntu6 [3226 B] Get:248 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-timer1.74.0 amd64 1.74.0-14ubuntu1 [228 kB] Get:249 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-timer1.74-dev amd64 1.74.0-14ubuntu1 [231 kB] Get:250 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-timer-dev amd64 1.74.0.3ubuntu6 [3326 B] Get:251 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-type-erasure1.74.0 amd64 1.74.0-14ubuntu1 [234 kB] Get:252 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-type-erasure1.74-dev amd64 1.74.0-14ubuntu1 [239 kB] Get:253 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-type-erasure-dev amd64 1.74.0.3ubuntu6 [3302 B] Get:254 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-wave1.74.0 amd64 1.74.0-14ubuntu1 [449 kB] Get:255 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-wave1.74-dev amd64 1.74.0-14ubuntu1 [496 kB] Get:256 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-wave-dev amd64 1.74.0.3ubuntu6 [3240 B] Get:257 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-nowide1.74.0 amd64 1.74.0-14ubuntu1 [223 kB] Get:258 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-nowide1.74-dev amd64 1.74.0-14ubuntu1 [220 kB] Get:259 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-nowide-dev amd64 1.74.0.3ubuntu6 [3284 B] Get:260 http://ftpmaster.internal/ubuntu jammy/universe amd64 libboost-all-dev amd64 1.74.0.3ubuntu6 [2274 B] Get:261 http://ftpmaster.internal/ubuntu jammy/main amd64 libcups2 amd64 2.3.3op2-7ubuntu2 [261 kB] Get:262 http://ftpmaster.internal/ubuntu jammy/main amd64 libdeflate0 amd64 1.8-1ubuntu1 [56.4 kB] Get:263 http://ftpmaster.internal/ubuntu jammy/main amd64 libdeflate-dev amd64 1.8-1ubuntu1 [48.2 kB] Get:264 http://ftpmaster.internal/ubuntu jammy/universe amd64 libdouble-conversion3 amd64 3.1.7-4 [39.0 kB] Get:265 http://ftpmaster.internal/ubuntu jammy/main amd64 libdrm-amdgpu1 amd64 2.4.107-8ubuntu1 [19.8 kB] Get:266 http://ftpmaster.internal/ubuntu jammy/main amd64 libdrm-intel1 amd64 2.4.107-8ubuntu1 [67.7 kB] Get:267 http://ftpmaster.internal/ubuntu jammy/main amd64 libdrm-nouveau2 amd64 2.4.107-8ubuntu1 [17.3 kB] Get:268 http://ftpmaster.internal/ubuntu jammy/main amd64 libdrm-radeon1 amd64 2.4.107-8ubuntu1 [21.6 kB] Get:269 http://ftpmaster.internal/ubuntu jammy/main amd64 libglvnd0 amd64 1.4.0-1 [73.6 kB] Get:270 http://ftpmaster.internal/ubuntu jammy/main amd64 libwayland-server0 amd64 1.19.0-2build1 [33.5 kB] Get:271 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgbm1 amd64 21.3.4-1 [31.2 kB] Get:272 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libglapi-mesa amd64 21.3.4-1 [35.1 kB] Get:273 http://ftpmaster.internal/ubuntu jammy/main amd64 libwayland-client0 amd64 1.19.0-2build1 [25.0 kB] Get:274 http://ftpmaster.internal/ubuntu jammy/main amd64 libx11-xcb1 amd64 2:1.7.2-2 [7786 B] Get:275 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-dri2-0 amd64 1.14-3ubuntu2 [7218 B] Get:276 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-dri3-0 amd64 1.14-3ubuntu2 [6978 B] Get:277 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-present0 amd64 1.14-3ubuntu2 [5726 B] Get:278 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-sync1 amd64 1.14-3ubuntu2 [9392 B] Get:279 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-xfixes0 amd64 1.14-3ubuntu2 [9980 B] Get:280 http://ftpmaster.internal/ubuntu jammy/main amd64 libxshmfence1 amd64 1.3-1build3 [5324 B] Get:281 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libegl-mesa0 amd64 21.3.4-1 [107 kB] Get:282 http://ftpmaster.internal/ubuntu jammy/main amd64 libegl1 amd64 1.4.0-1 [28.6 kB] Get:283 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-glx0 amd64 1.14-3ubuntu2 [25.9 kB] Get:284 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-shm0 amd64 1.14-3ubuntu2 [5792 B] Get:285 http://ftpmaster.internal/ubuntu jammy/main amd64 libxfixes3 amd64 1:5.0.3-2build2 [11.3 kB] Get:286 http://ftpmaster.internal/ubuntu jammy/main amd64 libxxf86vm1 amd64 1:1.1.4-1build2 [10.5 kB] Get:287 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 libllvm13 amd64 1:13.0.1~+rc1-1~exp4build1 [22.1 MB] Get:288 http://ftpmaster.internal/ubuntu jammy/main amd64 libsensors-config all 1:3.6.0-7build1 [5364 B] Get:289 http://ftpmaster.internal/ubuntu jammy/main amd64 libsensors5 amd64 1:3.6.0-7build1 [26.5 kB] Get:290 http://ftpmaster.internal/ubuntu jammy/main amd64 libvulkan1 amd64 1.2.198.1-2 [117 kB] Get:291 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgl1-mesa-dri amd64 21.3.4-1 [12.3 MB] Get:292 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libglx-mesa0 amd64 21.3.4-1 [157 kB] Get:293 http://ftpmaster.internal/ubuntu jammy/main amd64 libglx0 amd64 1.4.0-1 [41.0 kB] Get:294 http://ftpmaster.internal/ubuntu jammy/main amd64 libgl1 amd64 1.4.0-1 [110 kB] Get:295 http://ftpmaster.internal/ubuntu jammy/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:296 http://ftpmaster.internal/ubuntu jammy/main amd64 x11proto-dev all 2021.5-1 [604 kB] Get:297 http://ftpmaster.internal/ubuntu jammy/main amd64 libxau-dev amd64 1:1.0.9-1build4 [9734 B] Get:298 http://ftpmaster.internal/ubuntu jammy/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu4 [26.5 kB] Get:299 http://ftpmaster.internal/ubuntu jammy/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:300 http://ftpmaster.internal/ubuntu jammy/main amd64 libpthread-stubs0-dev amd64 0.4-1build1 [5456 B] Get:301 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb1-dev amd64 1.14-3ubuntu2 [86.5 kB] Get:302 http://ftpmaster.internal/ubuntu jammy/main amd64 libx11-dev amd64 2:1.7.2-2 [742 kB] Get:303 http://ftpmaster.internal/ubuntu jammy/main amd64 libglx-dev amd64 1.4.0-1 [14.1 kB] Get:304 http://ftpmaster.internal/ubuntu jammy/main amd64 libgl-dev amd64 1.4.0-1 [101 kB] Get:305 http://ftpmaster.internal/ubuntu jammy/main amd64 libegl-dev amd64 1.4.0-1 [18.0 kB] Get:306 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-double3 amd64 3.3.8-2ubuntu7 [680 kB] Get:307 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu7 [292 kB] Get:308 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu7 [643 kB] Get:309 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu7 [703 kB] Get:310 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu7 [29.2 kB] Get:311 http://ftpmaster.internal/ubuntu jammy/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu7 [2162 kB] Get:312 http://ftpmaster.internal/ubuntu jammy/main amd64 libgles1 amd64 1.4.0-1 [11.5 kB] Get:313 http://ftpmaster.internal/ubuntu jammy/main amd64 libgles2 amd64 1.4.0-1 [18.0 kB] Get:314 http://ftpmaster.internal/ubuntu jammy/main amd64 libgles-dev amd64 1.4.0-1 [49.4 kB] Get:315 http://ftpmaster.internal/ubuntu jammy/main amd64 libglu1-mesa amd64 9.0.1-1build2 [145 kB] Get:316 http://ftpmaster.internal/ubuntu jammy/main amd64 libglvnd-core-dev amd64 1.4.0-1 [12.7 kB] Get:317 http://ftpmaster.internal/ubuntu jammy/main amd64 libopengl0 amd64 1.4.0-1 [36.5 kB] Get:318 http://ftpmaster.internal/ubuntu jammy/main amd64 libopengl-dev amd64 1.4.0-1 [3400 B] Get:319 http://ftpmaster.internal/ubuntu jammy/main amd64 libglvnd-dev amd64 1.4.0-1 [3162 B] Get:320 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgl1-mesa-dev amd64 21.3.4-1 [6404 B] Get:321 http://ftpmaster.internal/ubuntu jammy/main amd64 libglu1-mesa-dev amd64 9.0.1-1build2 [232 kB] Get:322 http://ftpmaster.internal/ubuntu jammy/main amd64 libgraphite2-3 amd64 1.3.14-1build1 [71.2 kB] Get:323 http://ftpmaster.internal/ubuntu jammy/main amd64 libgudev-1.0-0 amd64 1:237-2 [16.3 kB] Get:324 http://ftpmaster.internal/ubuntu jammy/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu2 [351 kB] Get:325 http://ftpmaster.internal/ubuntu jammy/main amd64 libice6 amd64 2:1.0.10-1build1 [42.6 kB] Get:326 http://ftpmaster.internal/ubuntu jammy/main amd64 libimagequant0 amd64 2.17.0-1 [34.6 kB] Get:327 http://ftpmaster.internal/ubuntu jammy/main amd64 libevdev2 amd64 1.12.0+dfsg-1 [39.5 kB] Get:328 http://ftpmaster.internal/ubuntu jammy/main amd64 libwacom-common all 1.12-1 [52.4 kB] Get:329 http://ftpmaster.internal/ubuntu jammy/main amd64 libwacom2 amd64 1.12-1 [22.4 kB] Get:330 http://ftpmaster.internal/ubuntu jammy/main amd64 libinput-bin amd64 1.19.3-1 [19.7 kB] Get:331 http://ftpmaster.internal/ubuntu jammy/main amd64 libmtdev1 amd64 1.1.6-1build3 [14.4 kB] Get:332 http://ftpmaster.internal/ubuntu jammy/main amd64 libinput10 amd64 1.19.3-1 [130 kB] Get:333 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-turbo8 amd64 2.1.1-0ubuntu1 [134 kB] Get:334 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-turbo8-dev amd64 2.1.1-0ubuntu1 [257 kB] Get:335 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:336 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:337 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:338 http://ftpmaster.internal/ubuntu jammy/main amd64 liblapack3 amd64 3.10.0-2ubuntu1 [2504 kB] Get:339 http://ftpmaster.internal/ubuntu jammy/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-10 [29.9 kB] Get:340 http://ftpmaster.internal/ubuntu jammy/main amd64 liblcms2-2 amd64 2.12~rc1-2build1 [159 kB] Get:341 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmd4c0 amd64 0.4.8-1 [42.0 kB] Get:342 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmm7.6 amd64 7.6.0+dfsg-1 [855 kB] Get:343 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmm-dev amd64 7.6.0+dfsg-1 [147 kB] Get:344 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmm-plugins amd64 7.6.0+dfsg-1 [358 kB] Get:345 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-16-0 amd64 10.39-3 [202 kB] Get:346 http://ftpmaster.internal/ubuntu jammy/main amd64 libpng-dev amd64 1.6.37-3build4 [192 kB] Get:347 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqhull-r8.0 amd64 2020.2-4 [196 kB] Get:348 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5core5a amd64 5.15.2+dfsg-14ubuntu3 [2005 kB] Get:349 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5concurrent5 amd64 5.15.2+dfsg-14ubuntu3 [36.2 kB] Get:350 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5dbus5 amd64 5.15.2+dfsg-14ubuntu3 [222 kB] Get:351 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5network5 amd64 5.15.2+dfsg-14ubuntu3 [730 kB] Get:352 http://ftpmaster.internal/ubuntu jammy/main amd64 libsm6 amd64 2:1.2.3-1build1 [17.0 kB] Get:353 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-icccm4 amd64 0.4.1-1.1build1 [11.4 kB] Get:354 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-util1 amd64 0.4.0-1build1 [11.2 kB] Get:355 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-image0 amd64 0.4.0-1build2 [12.7 kB] Get:356 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-keysyms1 amd64 0.4.0-1build2 [8708 B] Get:357 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-randr0 amd64 1.14-3ubuntu2 [18.3 kB] Get:358 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-render0 amd64 1.14-3ubuntu2 [16.4 kB] Get:359 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-render-util0 amd64 0.3.9-1build2 [10.2 kB] Get:360 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-shape0 amd64 1.14-3ubuntu2 [6138 B] Get:361 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-xinerama0 amd64 1.14-3ubuntu2 [5400 B] Get:362 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-xinput0 amd64 1.14-3ubuntu2 [34.3 kB] Get:363 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-xkb1 amd64 1.14-3ubuntu2 [32.8 kB] Get:364 http://ftpmaster.internal/ubuntu jammy/main amd64 libxkbcommon0 amd64 1.3.1-1 [125 kB] Get:365 http://ftpmaster.internal/ubuntu jammy/main amd64 libxkbcommon-x11-0 amd64 1.3.1-1 [14.3 kB] Get:366 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5gui5 amd64 5.15.2+dfsg-14ubuntu3 [3719 kB] Get:367 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5widgets5 amd64 5.15.2+dfsg-14ubuntu3 [2559 kB] Get:368 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5xml5 amd64 5.15.2+dfsg-14ubuntu3 [124 kB] Get:369 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5designer5 amd64 5.15.2-5 [2698 kB] Get:370 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5sql5 amd64 5.15.2+dfsg-14ubuntu3 [122 kB] Get:371 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5help5 amd64 5.15.2-5 [134 kB] Get:372 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5opengl5 amd64 5.15.2+dfsg-14ubuntu3 [154 kB] Get:373 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5printsupport5 amd64 5.15.2+dfsg-14ubuntu3 [214 kB] Get:374 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5test5 amd64 5.15.2+dfsg-14ubuntu3 [150 kB] Get:375 http://ftpmaster.internal/ubuntu jammy/main amd64 libvulkan-dev amd64 1.2.198.1-2 [806 kB] Get:376 http://ftpmaster.internal/ubuntu jammy/main amd64 libxext-dev amd64 2:1.3.4-1 [84.7 kB] Get:377 http://ftpmaster.internal/ubuntu jammy/universe amd64 qt5-qmake-bin amd64 5.15.2+dfsg-14ubuntu3 [1126 kB] Get:378 http://ftpmaster.internal/ubuntu jammy/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] Get:379 http://ftpmaster.internal/ubuntu jammy/universe amd64 qt5-qmake amd64 5.15.2+dfsg-14ubuntu3 [208 kB] Get:380 http://ftpmaster.internal/ubuntu jammy/universe amd64 qtbase5-dev-tools amd64 5.15.2+dfsg-14ubuntu3 [818 kB] Get:381 http://ftpmaster.internal/ubuntu jammy/universe amd64 qtbase5-dev amd64 5.15.2+dfsg-14ubuntu3 [1136 kB] Get:382 http://ftpmaster.internal/ubuntu jammy/universe amd64 libqt5opengl5-dev amd64 5.15.2+dfsg-14ubuntu3 [42.3 kB] Get:383 http://ftpmaster.internal/ubuntu jammy/main amd64 libraqm0 amd64 0.7.0-4ubuntu1 [11.7 kB] Get:384 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsqlite3-dev amd64 3.37.2-2 [847 kB] Get:385 http://ftpmaster.internal/ubuntu jammy/main amd64 libjbig0 amd64 2.1-3.1build2 [28.8 kB] Get:386 http://ftpmaster.internal/ubuntu jammy/main amd64 libjbig-dev amd64 2.1-3.1build2 [27.3 kB] Get:387 http://ftpmaster.internal/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2build1 [159 kB] Get:388 http://ftpmaster.internal/ubuntu jammy/main amd64 libwebp6 amd64 0.6.1-2.1build1 [198 kB] Get:389 http://ftpmaster.internal/ubuntu jammy/main amd64 libtiff5 amd64 4.3.0-2 [183 kB] Get:390 http://ftpmaster.internal/ubuntu jammy/main amd64 libtiffxx5 amd64 4.3.0-2 [5746 B] Get:391 http://ftpmaster.internal/ubuntu jammy/main amd64 libtiff-dev amd64 4.3.0-2 [313 kB] Get:392 http://ftpmaster.internal/ubuntu jammy/main amd64 libwebpdemux2 amd64 0.6.1-2.1build1 [10.1 kB] Get:393 http://ftpmaster.internal/ubuntu jammy/main amd64 libwebpmux3 amd64 0.6.1-2.1build1 [20.2 kB] Get:394 http://ftpmaster.internal/ubuntu jammy/main amd64 libxslt1.1 amd64 1.1.34-4build1 [165 kB] Get:395 http://ftpmaster.internal/ubuntu jammy/main amd64 pkg-config amd64 0.29.2-1ubuntu2 [48.2 kB] Get:396 http://ftpmaster.internal/ubuntu jammy/universe amd64 python-matplotlib-data all 3.5.1-1 [2942 kB] Get:397 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-appdirs all 1.4.4-2 [11.4 kB] Get:398 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-attr all 20.3.0-1ubuntu1 [41.0 kB] Get:399 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-brotli amd64 1.0.9-2build4 [319 kB] Get:400 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-cycler all 0.11.0-1 [8156 B] Get:401 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-six all 1.16.0-3 [12.5 kB] Get:402 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:403 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:404 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-numpy amd64 1:1.21.5-1 [3960 kB] Get:405 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-scipy amd64 1.7.1-1ubuntu1 [15.4 MB] Get:406 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-ufolib2 all 0.12.1+dfsg1-1 [26.4 kB] Get:407 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-mpmath all 1.2.1-2 [419 kB] Get:408 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-sympy all 1.7.1-3 [4017 kB] Get:409 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-tz all 2021.3-1 [33.3 kB] Get:410 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-fs all 2.4.12-1 [84.9 kB] Get:411 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-lxml amd64 4.7.1-1 [1591 kB] Get:412 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-lz4 amd64 3.1.3+dfsg-1build2 [34.0 kB] Get:413 http://ftpmaster.internal/ubuntu jammy/universe amd64 unicode-data all 14.0.0-1.1 [8206 kB] Get:414 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-fonttools amd64 4.28.5-1 [822 kB] Get:415 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-kiwisolver amd64 1.3.2-1 [62.6 kB] Get:416 http://ftpmaster.internal/ubuntu jammy/main amd64 libopenjp2-7 amd64 2.4.0-6 [158 kB] Get:417 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-pil amd64 9.0.0-1 [436 kB] Get:418 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-tk amd64 3.9.10-1 [111 kB] Get:419 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-pil.imagetk amd64 9.0.0-1 [9722 B] Get:420 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:421 http://ftpmaster.internal/ubuntu jammy/main amd64 python3-packaging all 21.3-1 [30.7 kB] Get:422 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-matplotlib amd64 3.5.1-1 [6657 kB] Get:423 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-pyqt5.sip amd64 12.9.0-3 [71.9 kB] Get:424 http://ftpmaster.internal/ubuntu jammy/universe amd64 python3-pyqt5 amd64 5.15.6+dfsg-1ubuntu2 [2829 kB] Get:425 http://ftpmaster.internal/ubuntu jammy/universe amd64 sip-dev amd64 4.19.25+dfsg-3 [186 kB] Get:426 http://ftpmaster.internal/ubuntu jammy/universe amd64 libeigen3-dev all 3.4.0-2ubuntu2 [1056 kB] Get:427 http://ftpmaster.internal/ubuntu jammy/universe amd64 voronota amd64 1.22.3149-1 [2056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 242 MB in 19s (12.8 MB/s) Selecting previously unselected package libpython3.10-minimal:amd64. 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Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libglvnd-core-dev:amd64 (1.4.0-1) ... Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.71.0-2) ... No schema files found: doing nothing. Setting up libpython3.9-minimal:amd64 (3.9.10-1) ... Setting up libboost-iostreams1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libglvnd0:amd64 (1.4.0-1) ... Setting up libopenmm7.6 (7.6.0+dfsg-1) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up voronota (1.22.3149-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build4) ... Setting up libboost-chrono1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7build1) ... Setting up libboost-stacktrace1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libnghttp2-14:amd64 (1.43.0-1build2) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up libdeflate0:amd64 (1.8-1ubuntu1) ... Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu7) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libboost-nowide1.74.0 (1.74.0-14ubuntu1) ... Setting up libqhull-r8.0:amd64 (2020.2-4) ... Setting up xkb-data (2.33-1) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-exception1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up file (1:5.41-2) ... Setting up libboost-exception-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libcbor0.6:amd64 (0.6.0-0ubuntu4) ... Setting up sip-dev (4.19.25+dfsg-3) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1build1) ... Setting up libjbig0:amd64 (2.1-3.1build2) ... Setting up libopenmm-dev (7.6.0+dfsg-1) ... Setting up libpcre2-16-0:amd64 (10.39-3) ... Setting up libopengl0:amd64 (1.4.0-1) ... Setting up libboost-program-options1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg2-3) ... Setting up unicode-data (14.0.0-1.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.43.0-1) ... Setting up libgles2:amd64 (1.4.0-1) ... Setting up libexpat1-dev:amd64 (2.4.3-1) ... Setting up libboost-test1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up emacsen-common (3.0.4) ... Setting up qt5-qmake-bin (5.15.2+dfsg-14ubuntu3) ... Setting up libsqlite3-dev:amd64 (3.37.2-2) ... Setting up libfreetype6:amd64 (2.11.1+dfsg-1) ... Setting up libboost-program-options-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up libavahi-common-data:amd64 (0.8-5ubuntu4) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libgles1:amd64 (1.4.0-1) ... Setting up libdbus-1-3:amd64 (1.12.20-2ubuntu2) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu2) ... Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu7) ... Setting up libboost-nowide1.74-dev (1.74.0-14ubuntu1) ... Setting up libfribidi0:amd64 (1.0.8-2ubuntu2) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libhwloc15:amd64 (2.7.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1build2) ... Setting up libboost-context1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-1build2) ... Setting up libboost-graph1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1) ... Setting up libboost-random1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:amd64 (0.6.1-2.1build1) ... Setting up libjsoncpp25:amd64 (1.9.5-2) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libboost1.74-tools-dev (1.74.0-14ubuntu1) ... Setting up libsensors5:amd64 (1:3.6.0-7build1) ... Setting up libjpeg-turbo8:amd64 (2.1.1-0ubuntu1) ... Setting up libltdl7:amd64 (2.4.6-15build1) ... Setting up libfftw3-double3:amd64 (3.3.8-2ubuntu7) ... Setting up libcifpp-data (1.0.1-5) ... Setting up libglapi-mesa:amd64 (21.3.4-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg2-3) ... Setting up libssh-4:amd64 (0.9.6-2) ... Setting up libgfortran5:amd64 (11.2.0-14ubuntu1) ... Setting up libmtdev1:amd64 (1.1.6-1build3) ... Setting up libvulkan1:amd64 (1.2.198.1-2) ... Setting up libopenmm-plugins (7.6.0+dfsg-1) ... Setting up libboost-atomic1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-math1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up liblzma-dev:amd64 (5.2.5-2build1) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libcifpp1 (1.0.1-5) ... Setting up libboost-atomic-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libnuma1:amd64 (2.0.14-3ubuntu1) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libboost-container1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-3) ... Setting up libxshmfence1:amd64 (1.3-1build3) ... Setting up librhash0:amd64 (1.4.2-1) ... Setting up libuchardet0:amd64 (0.0.7-1build1) ... Setting up libnl-3-200:amd64 (3.4.0-1build3) ... Setting up libmpdec3:amd64 (2.5.1-2build1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.2-1ubuntu1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up libopenjp2-7:amd64 (2.4.0-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.22.1-1ubuntu1) ... Setting up libboost-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libboost-math1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libopengl-dev:amd64 (1.4.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up python3.9-minimal (3.9.10-1) ... Setting up libfido2-1:amd64 (1.9.0-2) ... Setting up libboost-python1.74.0 (1.74.0-14ubuntu1) ... Setting up libboost-fiber1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-stacktrace1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-test1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python-matplotlib-data (3.5.1-1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1build1) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu3) ... Setting up libdeflate-dev:amd64 (1.8-1ubuntu1) ... Setting up libdrm-common (2.4.107-8ubuntu1) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libevdev2:amd64 (1.12.0+dfsg-1) ... Setting up libboost-timer1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libicu-dev:amd64 (67.1-7ubuntu1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libgudev-1.0-0:amd64 (1:237-2) ... Setting up qtchooser (66-2build1) ... Setting up libpython3.9-stdlib:amd64 (3.9.10-1) ... Setting up libjs-underscore (1.9.1~dfsg-4) ... Setting up libboost-thread1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-numpy1.74.0 (1.74.0-14ubuntu1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1build2) ... Setting up libwacom-common (1.12-1) ... Setting up libxkbcommon0:amd64 (1.3.1-1) ... Setting up libwayland-client0:amd64 (1.19.0-2build1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up x11proto-dev (2021.5-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libice6:amd64 (2:1.0.10-1build1) ... Setting up libboost-log1.74.0 (1.74.0-14ubuntu1) ... Setting up libdw1:amd64 (0.186-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.1-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu4) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1build2) ... Setting up liblapack3:amd64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libvulkan-dev:amd64 (1.2.198.1-2) ... Setting up libxcb1:amd64 (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libxcb-xfixes0:amd64 (1.14-3ubuntu2) ... Setting up libxau-dev:amd64 (1:1.0.9-1build4) ... Setting up qt5-qmake:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libxcb-xinput0:amd64 (1.14-3ubuntu2) ... Setting up libtool (2.4.6-15build1) ... Setting up libboost-container1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libarchive13:amd64 (3.5.2-1) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu2) ... Setting up libboost-chrono-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libfftw3-bin (3.3.8-2ubuntu7) ... Setting up libgfortran-11-dev:amd64 (11.2.0-14ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libboost-math-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libxcb-glx0:amd64 (1.14-3ubuntu2) ... Setting up libboost-coroutine1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1build1) ... Setting up libedit2:amd64 (3.1-20210910-1) ... Setting up libboost-system-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libpng-dev:amd64 (1.6.37-3build4) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1build2) ... Setting up libxcb-shape0:amd64 (1.14-3ubuntu2) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu4) ... Setting up libjbig-dev:amd64 (2.1-3.1build2) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1build2) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-render-util0:amd64 (0.3.9-1build2) ... Setting up libboost-tools-dev (1.74.0.3ubuntu6) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1build1) ... Setting up dssp (4.0.0-2) ... Setting up libboost-nowide-dev (1.74.0.3ubuntu6) ... Setting up libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up libboost-container-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libxcb-util1:amd64 (0.4.0-1build1) ... Setting up libxcb-xkb1:amd64 (1.14-3ubuntu2) ... Setting up libxcb-image0:amd64 (0.4.0-1build2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:amd64 (2.0.14-3ubuntu1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1build3) ... Setting up libboost-test-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libxcb-present0:amd64 (1.14-3ubuntu2) ... Setting up libpython3.10-stdlib:amd64 (3.10.2-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu4) ... Setting up libxcb-xinerama0:amd64 (1.14-3ubuntu2) ... Setting up libjs-jquery-ui (1.13.0+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.14-3ubuntu2) ... Setting up libraqm0:amd64 (0.7.0-4ubuntu1) ... Setting up shared-mime-info (2.1-2) ... Setting up libxkbcommon-x11-0:amd64 (1.3.1-1) ... Setting up libevent-dev (2.1.12-stable-1build2) ... Setting up libboost-random1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libeigen3-dev (3.4.0-2ubuntu2) ... Setting up libboost-timer1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-numpy1.74-dev (1.74.0-14ubuntu1) ... Setting up libllvm13:amd64 (1:13.0.1~+rc1-1~exp4build1) ... Setting up libqt5core5a:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up gfortran-11 (11.2.0-14ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libxcb-dri2-0:amd64 (1.14-3ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libboost-wave1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libdrm2:amd64 (2.4.107-8ubuntu1) ... Setting up dwz (0.14-1build1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libnl-3-dev:amd64 (3.4.0-1build3) ... Setting up groff-base (1.22.4-8) ... Setting up libqt5dbus5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libxcb-randr0:amd64 (1.14-3ubuntu2) ... Setting up libboost-stacktrace-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libxslt1.1:amd64 (1.1.34-4build1) ... Setting up debugedit (1:5.0-4) ... Setting up libcurl4:amd64 (7.81.0-1) ... Setting up libx11-6:amd64 (2:1.7.2-2) ... Setting up libtiff5:amd64 (4.3.0-2) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libboost-locale1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libqt5test5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libboost-regex-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libwacom2:amd64 (1.12-1) ... Setting up libsm6:amd64 (2:1.2.3-1build1) ... Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu7) ... Setting up libqt5concurrent5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu4) ... Setting up libboost-timer-dev:amd64 (1.74.0.3ubuntu6) ... Setting up python3.9 (3.9.10-1) ... Setting up libboost-type-erasure1.74.0:amd64 (1.74.0-14ubuntu1) ... Setting up libpython3-stdlib:amd64 (3.10.1-0ubuntu1) ... Setting up libtiffxx5:amd64 (4.3.0-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-10) ... Setting up libdrm-amdgpu1:amd64 (2.4.107-8ubuntu1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.14-3ubuntu2) ... Setting up libx11-xcb1:amd64 (2:1.7.2-2) ... Setting up libpython3.10:amd64 (3.10.2-1) ... Setting up libibverbs1:amd64 (38.0-1build1) ... Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.107-8ubuntu1) ... Setting up libxcb1-dev:amd64 (1.14-3ubuntu2) ... Setting up python3.10 (3.10.2-1) ... Setting up libboost-wave1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.10-1build3) ... Setting up libgbm1:amd64 (21.3.4-1) ... Setting up ibverbs-providers:amd64 (38.0-1build1) ... Setting up libdrm-radeon1:amd64 (2.4.107-8ubuntu1) ... Setting up openssh-client (1:8.7p1-4) ... update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:amd64 (2.4.107-8ubuntu1) ... Setting up libgl1-mesa-dri:amd64 (21.3.4-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libx11-dev:amd64 (2:1.7.2-2) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libboost-random-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libcurl3-gnutls:amd64 (7.81.0-1) ... Setting up python3 (3.10.1-0ubuntu1) ... Setting up libboost-wave-dev:amd64 (1.74.0.3ubuntu6) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libqt5network5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up python3-tz (2021.3-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1build2) ... Setting up libinput-bin (1.19.3-1) ... Setting up libxnvctrl0:amd64 (470.57.01-0ubuntu3) ... Setting up libqt5sql5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-six (1.16.0-3) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1build3) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libltdl-dev:amd64 (2.4.6-15build1) ... Setting up qtbase5-dev-tools (5.15.2+dfsg-14ubuntu3) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up libqt5xml5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libegl-mesa0:amd64 (21.3.4-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up libtiff-dev:amd64 (4.3.0-2) ... Setting up libxfixes3:amd64 (1:5.0.3-2build2) ... Setting up libboost-graph1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-brotli (1.0.9-2build4) ... Setting up python3-cycler (0.11.0-1) ... Setting up libboost-numpy-dev (1.74.0.3ubuntu6) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up libpython3.10-dev:amd64 (3.10.2-1) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libboost-date-time-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libxext-dev:amd64 (2:1.3.4-1) ... Setting up libcups2:amd64 (2.3.3op2-7ubuntu2) ... Setting up python3-pyqt5.sip (12.9.0-3) ... Setting up python3.10-dev (3.10.2-1) ... Setting up python3-lxml:amd64 (4.7.1-1) ... Setting up libegl1:amd64 (1.4.0-1) ... Setting up cmake (3.22.1-1ubuntu1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libhwloc-dev:amd64 (2.7.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1build1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.9.10-1) ... Setting up python3-appdirs (1.4.4-2) ... Setting up libboost-thread-dev:amd64 (1.74.0.3ubuntu6) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.9.10-1) ... Setting up dh-python (5.20220101) ... Setting up libinput10:amd64 (1.19.3-1) ... Setting up python3-sympy (1.7.1-3) ... Setting up librdmacm1:amd64 (38.0-1build1) ... Setting up python3-attr (20.3.0-1ubuntu1) ... Setting up libboost-graph-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libucx0:amd64 (1.12.0-1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu4) ... Setting up libglx-mesa0:amd64 (21.3.4-1) ... Setting up libpython3-dev:amd64 (3.10.1-0ubuntu1) ... Setting up libboost-log1.74-dev (1.74.0-14ubuntu1) ... Setting up libglx0:amd64 (1.4.0-1) ... Setting up python3-lz4 (3.1.3+dfsg-1build2) ... Setting up libtk8.6:amd64 (8.6.12-1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libibverbs-dev:amd64 (38.0-1build1) ... Setting up libhwloc-plugins:amd64 (2.7.0-1) ... Setting up libboost-context1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-fs (2.4.12-1) ... Setting up libboost-fiber1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-packaging (21.3-1) ... Setting up libgl1:amd64 (1.4.0-1) ... Setting up libboost-type-erasure1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-dev (3.10.1-0ubuntu1) ... Setting up libboost-locale1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up python3-numpy (1:1.21.5-1) ... Setting up libglx-dev:amd64 (1.4.0-1) ... Setting up libboost-coroutine1.74-dev:amd64 (1.74.0-14ubuntu1) ... Setting up libboost-coroutine-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libglu1-mesa:amd64 (9.0.1-1build2) ... Setting up libboost-log-dev (1.74.0.3ubuntu6) ... Setting up libgl-dev:amd64 (1.4.0-1) ... Setting up libboost-fiber-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libfabric1:amd64 (1.11.0-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build1) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up libegl-dev:amd64 (1.4.0-1) ... Setting up libpmix2:amd64 (4.1.1~rc6-1ubuntu1) ... Setting up libopenmpi3:amd64 (4.1.2-1ubuntu1) ... Setting up blt (2.5.3+dfsg-4.1build1) ... Setting up libboost-mpi1.74.0 (1.74.0-14ubuntu1) ... Setting up libqt5gui5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up python3-tk:amd64 (3.9.10-1) ... Setting up libboost-locale-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libqt5widgets5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libboost-context-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libqt5help5:amd64 (5.15.2-5) ... Setting up libboost-python1.74-dev (1.74.0-14ubuntu1) ... Setting up libboost-python-dev (1.74.0.3ubuntu6) ... Setting up libboost-type-erasure-dev:amd64 (1.74.0.3ubuntu6) ... Setting up libqt5printsupport5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libglu1-mesa-dev:amd64 (9.0.1-1build2) ... Setting up qtbase5-dev:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libqt5opengl5:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up libgles-dev:amd64 (1.4.0-1) ... Setting up libboost-graph-parallel1.74.0 (1.74.0-14ubuntu1) ... Setting up libpmix-dev:amd64 (4.1.1~rc6-1ubuntu1) ... Setting up openmpi-bin (4.1.2-1ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libqt5designer5:amd64 (5.15.2-5) ... Setting up libqt5opengl5-dev:amd64 (5.15.2+dfsg-14ubuntu3) ... Setting up mpi-default-bin (1.14) ... Setting up libglvnd-dev:amd64 (1.4.0-1) ... Setting up libboost-graph-parallel1.74-dev (1.74.0-14ubuntu1) ... Setting up libgl1-mesa-dev:amd64 (21.3.4-1) ... Setting up libopenmpi-dev:amd64 (4.1.2-1ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up python3-pyqt5 (5.15.6+dfsg-1ubuntu2) ... Setting up libboost-mpi-python1.74.0 (1.74.0-14ubuntu1) ... Setting up libboost-graph-parallel-dev (1.74.0.3ubuntu6) ... Setting up mpi-default-dev (1.14) ... Setting up libboost-mpi1.74-dev (1.74.0-14ubuntu1) ... Setting up libboost-mpi-python1.74-dev (1.74.0-14ubuntu1) ... Setting up libboost-mpi-python-dev (1.74.0.3ubuntu6) ... Setting up libboost-mpi-dev (1.74.0.3ubuntu6) ... Setting up libboost-all-dev (1.74.0.3ubuntu6) ... Setting up python3-pil:amd64 (9.0.0-1) ... Setting up python3-pil.imagetk:amd64 (9.0.0-1) ... Setting up python3-ufolib2 (0.12.1+dfsg1-1) ... Setting up python3-fonttools (4.28.5-1) ... Setting up python3-matplotlib (3.5.1-1) ... Setting up sbuild-build-depends-openstructure-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-166-generic amd64 (x86_64) Toolchain package versions: binutils_2.37.50.20220119-0ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-14ubuntu1 gcc-11_11.2.0-14ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-14ubuntu1 libstdc++6_11.2.0-14ubuntu1 linux-libc-dev_5.15.0-17.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 binutils_2.37.50.20220119-0ubuntu1 binutils-common_2.37.50.20220119-0ubuntu1 binutils-x86-64-linux-gnu_2.37.50.20220119-0ubuntu1 blt_2.5.3+dfsg-4.1build1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 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Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jan 19 13:18:18 2022 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./openstructure_2.3.0~rc-1.dsc dpkg-source: info: extracting openstructure in /<> dpkg-source: info: unpacking openstructure_2.3.0~rc.orig.tar.gz dpkg-source: info: unpacking openstructure_2.3.0~rc-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-dist-packages.patch dpkg-source: info: applying fix-quotes-in-ENV.patch dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying ost-compare-structures.patch dpkg-source: info: applying ost_config.patch dpkg-source: info: applying skip-dssp-tests.patch dpkg-source: info: applying basex-to-base.patch dpkg-source: info: applying 272d57f8b772fd8209dc147ed60a65bce443ca9a.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23077702 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23077702 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23077702 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.3.0~rc-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/x86_64-linux-gnu/openmm/plugins .. -- The CXX compiler identification is GNU 11.2.0 -- The C compiler identification is GNU 11.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of void* -- Check size of void* - done -- Found Python: /usr/bin/python3.10 (found suitable version "3.10.2", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed CMake Warning at /usr/share/cmake-3.22/Modules/FindBoost.cmake:2201 (message): No header defined for python310; skipping header check (note: header-only libraries have no designated component) Call Stack (most recent call first): cmake_support/OST.cmake:955 (find_package) CMakeLists.txt:191 (setup_boost) -- Found Boost package: python310 -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: unit_test_framework -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: filesystem system -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: iostreams regex -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: program_options -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: regex -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.31") found components: thread chrono date_time atomic -- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so -- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0") -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13") -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") -- Found FFTW: /usr/lib/x86_64-linux-gnu/libfftw3f.so -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.3.0") -- Found OpenMM: /usr/lib/x86_64-linux-gnu/libOpenMM.so -- Searching for python module PyQt5 for /usr/bin/python3.10 -- Found python module PyQt5 -- Searching for python module PyQt5.sip for /usr/bin/python3.10 -- Found python module PyQt5.sip -- OpenStructure will be built with the following options: Install Prefix (-DPREFIX) : /usr RPath in install (-DUSE_RPATH) : OFF Info support (-DENABLE_INFO) : ON Graphical interface (-DENABLE_GUI) : ON OpenGL support (-DENABLE_GFX) : ON Shader support (-DUSE_SHADER) : OFF Numpy support (-DUSE_NUMPY) : OFF SpaceNav Device support (-DENABLE_SPNAV) : OFF OpenMM support (-DENABLE_MM) : ON OpenMM plugins (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/x86_64-linux-gnu/openmm/plugins Optimize (-DOPTIMIZE) : OFF Profiling support (-DPROFILE) : OFF Double Precision (-DUSE_DOUBLE_PRECISION) : OFF Compound Lib (-DCOMPOUND_LIB) : NONE TMAlign and TMScore (-DCOMPILE_TMTOOLS) : OFF Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/<>" -B"/<>/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/obj-x86_64-linux-gnu/CMakeFiles" "/<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake" --color= make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake" --color= make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake" --color= make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake" --color= make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./__init__.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/lib cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/bin make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -DINPUT_FILE=/<>/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /<>/cmake_support/substitute.cmake cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./lga.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./lga.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./__init__.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hbplus.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hbplus.py cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/pymod/./cleanup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./cleanup.py [ 0%] Built target subst___init__.py make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/tests make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/pymod" "/<>/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./msms.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./msms.py [ 0%] Built target ost_conop_pymod make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./tmtools.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./tmtools.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/db/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/db/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/db/./__init__.py [ 0%] Built target create_stage make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/geom/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./dssp.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./dssp.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./clustalw.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./clustalw.py [ 0%] Built target ost_geom_pymod make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/pymod/./py_gfx_obj.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./py_gfx_obj.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/src" "/<>/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake" --color= [ 0%] Built target ost_db_pymod make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./utils.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./utils.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/share" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/share" "/<>/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target ost_gfx_pymod make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./naccess.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./naccess.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/share" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/share" "/<>/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/add_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hhblits.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/close_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hhblits2.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits2.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/images/logo-small.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/critical_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/delete_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./hhblits3.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits3.py [ 0%] Built target gui_images make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./blast.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./blast.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/distance_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/find_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./cadscore.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./cadscore.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/color_options_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_options_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/selection_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/information_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./kclust.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./kclust.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/color_select_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_select_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./ialign.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./ialign.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/map_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/pymod/./mmseqs2.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./mmseqs2.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/combo_options_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/combo_options_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/measure_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/menubar_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/cpk_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/cpk_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/rigid_body_manipulator_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png [ 0%] Built target ost_bindings_pymod make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/selection_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/custom_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/custom_widget.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/show_sidebar_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_editor_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_editor_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/site_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/manipulator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_info_handler.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_info_handler.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/termuse.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/termuse.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/split_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_list_model.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_list_model.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/warning_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/superpositiondialog.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/superpositiondialog.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/mouse_event.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/init.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/init.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/share" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/share/icons/refresh.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/gradient_preset_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_preset_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/map_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/dng/menu.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/menu.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/align_properties_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/hsc_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/hsc_widget.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target scene_icons cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/immutable_gradient_info_handler.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake" --color= [ 0%] Built target ost_gui_dng_pymod make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/immutable_preset_info_handler.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_preset_info_handler.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/background_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/./__init__.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/conservation_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/init_inspector.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/init_inspector.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/inspector_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/inspector_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_context_menu.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_context_menu.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/map_level_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/map_level_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_menubar.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_menubar.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/secstr_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh [ 0%] Built target ost_img_pymod cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset.py make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/remote.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/remote.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_spacenav.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_spacenav.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/alg/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_editor_list_model.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_list_model.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_selection_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./init_splash.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_splash.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_editor_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./trajectory_viewer.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./trajectory_viewer.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target ost_img_alg_pymod cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./helpwidget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./helpwidget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_text_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/pymod" "/<>/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_info_handler.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_info_handler.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./table.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./table.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_delegate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/info/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/info/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_list_model.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_list_model.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/./gosty_startup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./gosty_startup.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/preset_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_widget.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh [ 0%] Built target ost_info_pymod make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_mode_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_mode_widget.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/pymod" "/<>/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake" --color= [ 0%] Built target ost_gui_pymod make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_op.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_op.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_search_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/render_options_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_options_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./__init__.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./remote.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./remote.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/scene_observer_impl.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_observer_impl.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/io/pymod/./repository.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./repository.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/scene_selection_helper.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_selection_helper.py [ 0%] Built target ost_mol_pymod cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/tick_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/simple_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/simple_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/title_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./__init__.py [ 0%] Built target ost_io_pymod make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/sline_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/sline_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/alignment_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./views.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./views.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./forcefield.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./superpose.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./superpose.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/toolbar_options_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/toolbar_options_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./ff_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/trace_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/trace_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/main_thread_runner.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./qsscoring.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./qsscoring.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/output_redirector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./buildingblock.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/tube_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/tube_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/completer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/uniform_color_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/uniform_color_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./trajectory_analysis.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./trajectory_analysis.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/dir_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./gromacs_block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/visibility_op.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/visibility_op.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./structure_analysis.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./structure_analysis.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/line_trace_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/line_trace_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./heuristic_block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/gutter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./helix_kinks.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./helix_kinks.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/path_completer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/pymod/./hbond.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./hbond.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/wireframe_widget.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/wireframe_widget.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./interaction.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/query_editor.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/query_editor.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./settings.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_context_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh [ 0%] Built target ost_mol_alg_pymod make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./simulation.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_completer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh [ 0%] Built target ost_gui_scene_pymod make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./modeller.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/./__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/pymod/./antechamber.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./antechamber.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./state_extractor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target ost_seq_pymod cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend [ 0%] Built target ost_mol_mm_pymod make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./system_creator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_tokenizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./__init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./__init__.py make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./topology_creator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_syntax_highlighter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./mat.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./mat.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./index.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./renumber.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./renumber.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/text_logger.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh [ 0%] Built target subst_ost_startup.py cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./topology.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/./aaindex.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./aaindex.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./steep.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter_worker.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/aaindex1 /<>/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_text_document_layout.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/aaindex2 /<>/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 [ 0%] Built target ost_mol_mm_headers [ 0%] Built target subst_ost_config make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/shell_history.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/pymod/aaindex3 /<>/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state_machine.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build [ 0%] Built target ost_seq_alg_pymod make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/actions" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/actions" "/<>/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition_guard.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/actions" && /usr/bin/cmake -E copy_if_different /<>/actions/ost-compare-structures /<>/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures [ 0%] Built target subst_dng make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend [ 0%] Built target subst_ost make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/src" "/<>/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake" --color= make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/config" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/config" "/<>/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/drop_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/export_helper/vector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh [ 0%] Built target actions cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./config.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/generic_property_def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/bottom_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./exc.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./dllexport.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/pair_to_tuple_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./geom.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./version.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/vec_to_list_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/event_button.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/test_utils/compare_files.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_widget_container.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh [ 0%] Built target ost_config_headers make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./generic_property.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar_widget_holder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./integrity_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/side_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat4.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./invalid_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/splitter_panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./settings.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./settings.py cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./ptr_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/tabbed_panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/context_menu.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./stutil.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./stutil.py cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log_sink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./table.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/current_selection_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec4.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/custom_part_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./table_selector.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table_selector.py cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./dyn_cast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat2_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./xmlrunner.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./xmlrunner.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_part_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat3_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/base/pymod/./testutils.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./testutils.py cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E copy_if_different __init__.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/__init__.py cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/gfx_scene_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint_msc.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat4_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/label_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./range.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./circular_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh [ 0%] Built target ost_base_pymod make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/root_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./constants.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./units.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./units.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_mode_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./message.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./platform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_modes_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./string_ref.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./pod_vector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./fixed_string.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./tri_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./aligned_cuboid.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_box_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./boost_filesystem_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec_mat_predicates.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/log_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./paged_array.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./alignment_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./quat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/argand.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh [ 0%] Built target ost_base_headers make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/src" "/<>/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./point_cloud.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_region.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/draw_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh [ 0%] Built target ost_geom_headers cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/drawing_functions.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/fft_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./invalid_sequence.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/pointer_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/info_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./views_from_sequences.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/img2qt.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_item.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./profile_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/mask_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/null_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_path.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh [ 0%] Built target ost_seq_headers make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/src" "/<>/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_set.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/src" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/src/./wrap_tmalign.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh [ 0%] Built target ost_bindings_headers make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_verbose_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/src" "/<>/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/dihedral.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./conop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./geom_info_conversion.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_gui.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type_cast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./processor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./amino_acids.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh [ 0%] Built target ost_info_headers cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./diag.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/src" "/<>/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./model_check.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_wrap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./heuristic.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/viewer_normalizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_browser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./linear_indexer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_type_dialog.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./binary_container.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./rule_based.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./extract_data_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_canvas.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./minimal_compound_lib.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh [ 0%] Built target ost_db_headers cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_menu.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./ring_finder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./alignment_opts.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gosty_app.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./clip_alignment.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./admin.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh [ 0%] Built target ost_conop_headers make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/src" "/<>/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./conservation.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/raster_image/raster_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_prediction_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/dispatch.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_area.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./distance_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_table.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./perspective.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_selection.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./entropy.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_window.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./global_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./ins_del.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./thin_splitter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./local_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_class.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./merge_pairwise_alignments.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_geom_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_frequency_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./pair_subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_pool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./semiglobal_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./in_mem_coord_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_registry.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_identity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_state_saver.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_similarity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_frame.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_loader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_spatial_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./variance_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh [ 0%] Built target ost_gui_headers make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./anisotropic.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/index.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./mol.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./hmm_pseudo_counts.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/value_holder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./auto_correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./hmm_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clear.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./circle_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clip_min_max.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target ost_seq_alg_headers cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./conjugate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/src" "/<>/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./composite_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./convolute.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/chemdict_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/star_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_property_mapper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./cross_correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./density_slice.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_types.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./dft.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/io_profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/dcd_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./handle_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fft.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./debug.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_crd_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fftw_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./ics_editor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./dllexport.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pqr_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./not_connected_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fill.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mae_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./property_id.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./filter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mmcif_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fourier_filters.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pdb_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_gradient_magnitude.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_sdf_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_laplacian.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/save_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./highest_peak_search_3d.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./histogram.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./sec_structure.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./spatial_organizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./local_sigma_threshold.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./mask_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./inverted_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_builder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_msms_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./negate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./builder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_str.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/stereochemical_params_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/omf.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_linear.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/load_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./torsion_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_log.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_df3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transfer_connectivity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_od.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_view_wrapper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/image_format.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./power_spectrum.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dx_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./randomize.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_spi_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./smooth_mask_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./xcs_editor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_situs_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./null_data.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bounding_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_accumulator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./observable.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_min_max.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./paste_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./threshold.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_mrc_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transcendentals.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dat_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./peak.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh [ 0%] Built target ost_mol_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./phase.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_ipl_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./physical_units.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_jpk_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./svd_superpose.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./pixel_sampling.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_nanoscope_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_png_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_structure_segments.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_mirror.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./polygon_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dm3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_shift.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./local_dist_diff_test.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_tiff_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./discrete_shrink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./progress.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_test_common.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/tiff_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformation_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./size.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_rmsd_test.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/jpk_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformations.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./spherical_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./superpose_frames.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/sequence_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fractional_shift.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.cc /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/fasta_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./filter_clashes.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pir_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./construct_cbeta.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./polar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./value_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/promod_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./clash_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_average.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./vecmat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/profile_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./trajectory_analysis.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./rscrosscorr.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_info_convert.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/hhm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./structure_analysis.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pssm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh [ 0%] Built target ost_img_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/clustal_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh [ 0%] Built target ost_img_alg_headers make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/src" "/<>/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/config" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/config" "/<>/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./pdbize.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/load.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/save.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./adjacency_bitmap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_sink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh [ 0%] Built target ost_config cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/src" "/<>/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_spec.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./contact_overlap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./domain_find.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_octree.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./container_serialization.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c "/<>/modules/geom/src/mat2.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./similarity_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/octree_isocont.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./swap_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./accessibility.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cartoon_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_utils.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_struct.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/custom_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_exception.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./nonstandard.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cpk_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./convert.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./molck.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/debug_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./converting_streams.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./find_membrane.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/simple_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./formatted_line.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/chemdict_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/sline_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./entity_to_density.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/star_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh [ 0%] Built target ost_mol_alg_headers cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/line_trace_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c "/<>/modules/geom/src/mat3.cc" cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/backbone_trace.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_detail.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/io_profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/dcd_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_crd_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/connect_renderer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pqr_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/mapped_property.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mae_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mmcif_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/tabulated_trig.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/fast_spheres.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/custom_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pdb_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cpk_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_sdf_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/simple_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/sline_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_trace_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/save_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cartoon_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/trace_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_msms_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_str.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_element_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/stereochemical_params_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_chain_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/uniform_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/omf.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/sequence_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/entity_view_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/basic_gradient_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_level_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/map_handle_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/fasta_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_pass.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pir_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./bitmap_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./collada_exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/promod_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/profile_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/hhm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pssm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/clustal_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/load.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/save.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/load_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_df3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/image_format.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dx_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_spi_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_situs_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_prim.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_mrc_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./symmetry_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dat_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_test_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_ipl_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glwin_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_jpk_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./input.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_nanoscope_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./prim_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_png_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dm3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_tiff_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/tiff_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./selection.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/jpk_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./texture.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh [ 0%] Built target ost_io_headers cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c "/<>/modules/geom/src/mat4.cc" cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_include.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glext_include.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_mode.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./material.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./primitives.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gost_exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color_ops/map_handle_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_slab.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target ost_gfx_headers [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c "/<>/modules/geom/src/vec3.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c "/<>/modules/geom/src/vecmat2_op.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c "/<>/modules/geom/src/vecmat3_op.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c "/<>/modules/geom/src/vecmat4_op.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c "/<>/modules/geom/src/composite2.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c "/<>/modules/geom/src/composite3.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c "/<>/modules/geom/src/composite2_op.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c "/<>/modules/geom/src/composite3_op.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c "/<>/modules/geom/src/quat.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c "/<>/modules/geom/src/transform.cc" [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c "/<>/modules/geom/src/aligned_cuboid.cc" [ 2%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c "/<>/modules/geom/src/point_cloud.cc" [ 2%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.3 -o ../../../stage/lib/libost_geom.so.2.3.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3 ../../../stage/lib/libost_geom.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 2%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake" --color= make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o [ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c "/<>/modules/base/src/generic_property.cc" cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c "/<>/modules/base/src/log.cc" [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c "/<>/modules/geom/pymod/export_vecmat2_op.cc" [ 3%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c "/<>/modules/geom/pymod/export_vec2.cc" [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c "/<>/modules/base/src/log_sink.cc" [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o -MF CMakeFiles/ost_base.dir/profile.cc.o.d -o CMakeFiles/ost_base.dir/profile.cc.o -c "/<>/modules/base/src/profile.cc" [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/units.cc.o -MF CMakeFiles/ost_base.dir/units.cc.o.d -o CMakeFiles/ost_base.dir/units.cc.o -c "/<>/modules/base/src/units.cc" [ 3%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c "/<>/modules/base/src/string_ref.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vecmat2_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vec2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c "/<>/modules/base/src/platform.cc" [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/message.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/message.cc.o -MF CMakeFiles/ost_base.dir/message.cc.o.d -o CMakeFiles/ost_base.dir/message.cc.o -c "/<>/modules/base/src/message.cc" [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -MF CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o.d -o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o -c "/<>/modules/base/src/test_utils/compare_files.cc" [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c "/<>/modules/geom/pymod/export_vec3.cc" [ 5%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/c++ -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -MF CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o.d -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c "/<>/modules/base/src/boost_filesystem_helper.cc" [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c "/<>/modules/geom/pymod/export_vecmat3_op.cc" [ 5%] Linking CXX shared library ../../../stage/lib/libost_base.so cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.3 -o ../../../stage/lib/libost_base.so.2.3.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_base.so.2.3 ../../../stage/lib/libost_base.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 5%] Built target ost_base [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec4.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec4.cc.o -c "/<>/modules/geom/pymod/export_vec4.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vec3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vecmat3_op.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -c "/<>/modules/geom/pymod/export_vecmat4_op.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vec4.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -MF CMakeFiles/_ost_geom.dir/wrap_geom.cc.o.d -o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o -c "/<>/modules/geom/pymod/wrap_geom.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_vecmat4_op.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat2.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat2.cc.o -c "/<>/modules/geom/pymod/export_mat2.cc" [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat3.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat3.cc.o -c "/<>/modules/geom/pymod/export_mat3.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/wrap_geom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/src" "/<>/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c "/<>/modules/info/src/info_impl.cc" [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c "/<>/modules/info/src/info_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_mat2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_mat3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c "/<>/modules/geom/pymod/export_mat4.cc" [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2.cc.o -c "/<>/modules/geom/pymod/export_composite2.cc" [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c "/<>/modules/geom/pymod/export_composite3.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_composite2.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c "/<>/modules/info/src/info_group.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_mat4.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_composite3.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c "/<>/modules/info/src/info_item.cc" [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c "/<>/modules/geom/pymod/export_composite2_op.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_composite2_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c "/<>/modules/info/src/info_path.cc" [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c "/<>/modules/geom/pymod/export_composite3_op.cc" [ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o -MF CMakeFiles/ost_info.dir/info_set.cc.o.d -o CMakeFiles/ost_info.dir/info_set.cc.o -c "/<>/modules/info/src/info_set.cc" [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c "/<>/modules/geom/pymod/export_quat.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_composite3_op.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_quat.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/c++ -D_ost_geom_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c "/<>/modules/geom/pymod/export_transform.cc" [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c "/<>/modules/info/src/info_visitor.cc" [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c "/<>/modules/info/src/geom_info_conversion.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/geom/pymod/export_transform.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/c++ -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c "/<>/modules/info/src/info_verbose_visitor.cc" [ 7%] Linking CXX shared library ../../../stage/lib/libost_info.so cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.3 -o ../../../stage/lib/libost_info.so.2.3.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so [ 7%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/geom/_ost_geom.so cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_info.so.2.3 ../../../stage/lib/libost_info.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 7%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/src" "/<>/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c "/<>/modules/mol/base/src/atom_handle.cc" [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c "/<>/modules/mol/base/src/atom_base.cc" [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c "/<>/modules/img/base/src/circle_mask.cc" [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c "/<>/modules/img/base/src/composite_mask.cc" [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c "/<>/modules/mol/base/src/atom_view.cc" [ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c "/<>/modules/mol/base/src/bond_handle.cc" [ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c "/<>/modules/img/base/src/data_algorithm.cc" [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c "/<>/modules/mol/base/src/chain_base.cc" cd "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/geom/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)" [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c "/<>/modules/img/base/src/data_observer.cc" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 8%] Built target _ost_geom [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c "/<>/modules/mol/base/src/chain_handle.cc" make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 8%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/c++ -D_ost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c "/<>/modules/base/pymod/wrap_base.cc" [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c "/<>/modules/img/base/src/data.cc" [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c "/<>/modules/img/base/src/extent_iterator.cc" [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c "/<>/modules/mol/base/src/chain_view.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/base/pymod/wrap_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c "/<>/modules/mol/base/src/chain_type.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/mol/base/src/chain_view.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c "/<>/modules/img/base/src/extent_mask.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c "/<>/modules/img/base/src/extent.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c "/<>/modules/img/base/src/image_factory.cc" [ 10%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/c++ -D_ost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c "/<>/modules/base/pymod/export_logger.cc" [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c "/<>/modules/mol/base/src/coord_frame.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c "/<>/modules/img/base/src/image_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/base/pymod/export_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c "/<>/modules/mol/base/src/coord_group.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c "/<>/modules/img/base/src/image_impl.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c "/<>/modules/img/base/src/image_list.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c "/<>/modules/img/base/src/inverted_mask.cc" [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c "/<>/modules/mol/base/src/editor_base.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c "/<>/modules/img/base/src/map.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c "/<>/modules/img/base/src/mask_base.cc" [ 10%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/c++ -D_ost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c "/<>/modules/base/pymod/export_range.cc" cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c "/<>/modules/img/base/src/mask_op.cc" [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c "/<>/modules/mol/base/src/entity_base.cc" [ 10%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/c++ -D_ost_base_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c "/<>/modules/base/pymod/export_units.cc" [ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c "/<>/modules/img/base/src/mask.cc" [ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c "/<>/modules/mol/base/src/entity_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/base/pymod/export_range.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c "/<>/modules/img/base/src/observable.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/base/pymod/export_units.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c "/<>/modules/mol/base/src/entity_observer.cc" [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c "/<>/modules/mol/base/src/entity_property_mapper.cc" [ 11%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/_ost_base.so cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_base.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c "/<>/modules/img/base/src/paste_impl.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c "/<>/modules/mol/base/src/entity_view.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/mol/base/src/entity_view.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c "/<>/modules/mol/base/src/entity_visitor.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c "/<>/modules/img/base/src/peak.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c "/<>/modules/mol/base/src/ics_editor.cc" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/settings.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/stutil.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/table.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/table_selector.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/xmlrunner.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/base/pymod/testutils.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 12%] Built target _ost_base make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/pymod" "/<>/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/info/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c "/<>/modules/info/pymod/wrap_info.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c "/<>/modules/img/base/src/phase.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c "/<>/modules/img/base/src/physical_units.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c "/<>/modules/mol/base/src/not_connected_error.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c "/<>/modules/img/base/src/pixel_sampling.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/info/pymod/wrap_info.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c "/<>/modules/mol/base/src/property_id.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c "/<>/modules/mol/base/src/query.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c "/<>/modules/img/base/src/point_list.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c "/<>/modules/mol/base/src/query_error.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o -MF CMakeFiles/ost_mol.dir/query_state.cc.o.d -o CMakeFiles/ost_mol.dir/query_state.cc.o -c "/<>/modules/mol/base/src/query_state.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c "/<>/modules/img/base/src/point.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c "/<>/modules/img/base/src/polygon_mask.cc" [ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c "/<>/modules/mol/base/src/residue_base.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c "/<>/modules/img/base/src/progress.cc" [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c "/<>/modules/img/base/src/size.cc" [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c "/<>/modules/img/base/src/spherical_mask.cc" [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c "/<>/modules/mol/base/src/residue_handle.cc" [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c "/<>/modules/img/base/src/mask_info_convert.cc" [ 14%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c "/<>/modules/img/base/src/image_state/image_state_factory.cc" [ 14%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -MF CMakeFiles/ost_mol.dir/residue_view.cc.o.d -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c "/<>/modules/mol/base/src/residue_view.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/mol/base/src/residue_view.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c "/<>/modules/mol/base/src/surface_builder.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c "/<>/modules/mol/base/src/surface_handle.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c "/<>/modules/mol/base/src/transfer_connectivity.cc" [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c "/<>/modules/img/base/src/image_state/index.cc" [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c "/<>/modules/img/base/src/image_state/image_state_base.cc" [ 15%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/info/_ost_info.so cd "/<>/obj-x86_64-linux-gnu/modules/info/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so [ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c "/<>/modules/img/base/src/raster_image/raster_image.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o -MF CMakeFiles/ost_mol.dir/torsion_handle.cc.o.d -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c "/<>/modules/mol/base/src/torsion_handle.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -MF CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o.d -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c "/<>/modules/mol/base/src/query_view_wrapper.cc" cd "/<>/obj-x86_64-linux-gnu/modules/info/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/info/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target _ost_info [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o -MF CMakeFiles/ost_mol.dir/view_op.cc.o.d -o CMakeFiles/ost_mol.dir/view_op.cc.o -c "/<>/modules/mol/base/src/view_op.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o -MF CMakeFiles/ost_mol.dir/coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c "/<>/modules/mol/base/src/coord_source.cc" [ 15%] Linking CXX shared library ../../../../stage/lib/libost_img.so cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.3 -o ../../../../stage/lib/libost_img.so.2.3.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -MF CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c "/<>/modules/mol/base/src/in_mem_coord_source.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -MF CMakeFiles/ost_mol.dir/bounding_box.cc.o.d -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c "/<>/modules/mol/base/src/bounding_box.cc" cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3 ../../../../stage/lib/libost_img.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target ost_img make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c "/<>/modules/img/alg/src/anisotropic.cc" [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c "/<>/modules/img/alg/src/auto_correlate.cc" [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c "/<>/modules/img/alg/src/convolute.cc" [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o -MF CMakeFiles/ost_mol.dir/xcs_editor.cc.o.d -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c "/<>/modules/mol/base/src/xcs_editor.cc" [ 15%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c "/<>/modules/img/alg/src/correlate.cc" [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c "/<>/modules/mol/base/src/impl/atom_impl.cc" [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c "/<>/modules/mol/base/src/impl/chain_impl.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /<>/modules/mol/base/src/impl/atom_impl.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c "/<>/modules/mol/base/src/impl/connector_impl.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /<>/modules/mol/base/src/impl/chain_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c "/<>/modules/img/alg/src/cross_correlate.cc" [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -MF CMakeFiles/ost_mol.dir/impl/dihedral.cc.o.d -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c "/<>/modules/mol/base/src/impl/dihedral.cc" make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 17%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c "/<>/modules/img/base/pymod/export_data.cc" [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c "/<>/modules/mol/base/src/impl/entity_impl.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c "/<>/modules/img/alg/src/density_slice.cc" [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c "/<>/modules/mol/base/src/impl/fragment_impl.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_data.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c "/<>/modules/img/alg/src/dft.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c "/<>/modules/img/alg/src/fft.cc" [ 17%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c "/<>/modules/img/base/pymod/export_data_algorithm.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -MF CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o.d -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c "/<>/modules/img/alg/src/fourier_filters.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c "/<>/modules/img/alg/src/gaussian.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_data_algorithm.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c "/<>/modules/mol/base/src/impl/query_ast.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c "/<>/modules/img/alg/src/gaussian_gradient_magnitude.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c "/<>/modules/img/alg/src/gaussian_laplacian.cc" [ 17%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c "/<>/modules/img/base/pymod/export_extent.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c "/<>/modules/img/alg/src/highest_peak_search_3d.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -MF CMakeFiles/ost_img_alg.dir/histogram.cc.o.d -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c "/<>/modules/img/alg/src/histogram.cc" [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c "/<>/modules/mol/base/src/impl/query_impl.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_extent.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c "/<>/modules/mol/base/src/impl/residue_impl.cc" [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -MF CMakeFiles/ost_img_alg.dir/line_iterator.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c "/<>/modules/img/alg/src/line_iterator.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log_sink.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/log.hh:25, from /<>/modules/mol/base/src/impl/residue_impl.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c "/<>/modules/img/alg/src/local_sigma_threshold.cc" [ 19%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c "/<>/modules/img/base/pymod/export_image_handle.cc" [ 19%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c "/<>/modules/mol/base/src/impl/surface_impl.cc" [ 19%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c "/<>/modules/mol/base/src/impl/torsion_impl.cc" [ 19%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c "/<>/modules/img/alg/src/mask_image.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_image_handle.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c "/<>/modules/mol/base/src/impl/atom_prop.cc" [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c "/<>/modules/img/alg/src/normalizer.cc" [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c "/<>/modules/img/alg/src/normalizer_factory.cc" [ 20%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.3 -o ../../../../stage/lib/libost_mol.so.2.3.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_linear.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c "/<>/modules/img/alg/src/norm_linear.cc" [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c "/<>/modules/img/alg/src/norm_log.cc" [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c "/<>/modules/img/alg/src/norm_od.cc" [ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -MF CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c "/<>/modules/img/alg/src/power_spectrum.cc" [ 21%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c "/<>/modules/img/base/pymod/export_peak.cc" [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o -MF CMakeFiles/ost_img_alg.dir/randomize.cc.o.d -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c "/<>/modules/img/alg/src/randomize.cc" [ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c "/<>/modules/img/alg/src/smooth_mask_image.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3 ../../../../stage/lib/libost_mol.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 21%] Built target ost_mol [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c "/<>/modules/img/alg/src/stat.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_peak.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -MF CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c "/<>/modules/img/alg/src/stat_min_max.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_transform.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c "/<>/modules/img/alg/src/alg_transform.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c "/<>/modules/img/alg/src/alg_mirror.cc" make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c "/<>/modules/seq/base/src/impl/sequence_impl.cc" make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c "/<>/modules/mol/base/pymod/export_atom.cc" [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c "/<>/modules/img/base/pymod/export_phase.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c "/<>/modules/img/alg/src/alg_shift.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_atom.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c "/<>/modules/img/alg/src/threshold.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_phase.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c "/<>/modules/seq/base/src/impl/sequence_list_impl.cc" [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c "/<>/modules/img/base/pymod/export_point.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c "/<>/modules/img/alg/src/discrete_shrink.cc" [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c "/<>/modules/seq/base/src/sequence_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_point.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -MF CMakeFiles/ost_img_alg.dir/transformation_base.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c "/<>/modules/img/alg/src/transformation_base.cc" [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c "/<>/modules/seq/base/src/aligned_region.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -MF CMakeFiles/ost_img_alg.dir/transformations.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c "/<>/modules/img/alg/src/transformations.cc" [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c "/<>/modules/seq/base/src/aligned_column.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c "/<>/modules/img/alg/src/fractional_shift.cc" [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c "/<>/modules/seq/base/src/sequence_list.cc" [ 23%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c "/<>/modules/mol/base/pymod/export_atom_view.cc" [ 23%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c "/<>/modules/img/base/pymod/export_progress.cc" [ 23%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -MF CMakeFiles/ost_img_alg.dir/polar.cc.o.d -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c "/<>/modules/img/alg/src/polar.cc" [ 23%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c "/<>/modules/seq/base/src/alignment_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_atom_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_progress.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c "/<>/modules/img/alg/src/rscrosscorr.cc" [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c "/<>/modules/img/base/pymod/export_raster_image.cc" [ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c "/<>/modules/seq/base/src/sequence_op.cc" [ 24%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c "/<>/modules/img/alg/src/line_average.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/seq/base/src/sequence_op.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_raster_image.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c "/<>/modules/seq/base/src/views_from_sequences.cc" [ 24%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.3 -o ../../../../stage/lib/libost_img_alg.so.2.3.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c "/<>/modules/mol/base/pymod/export_bond.cc" [ 24%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c "/<>/modules/img/base/pymod/export_size.cc" [ 24%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c "/<>/modules/seq/base/src/profile_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_bond.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_size.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3 ../../../../stage/lib/libost_img_alg.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target ost_img_alg [ 24%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c "/<>/modules/mol/base/pymod/export_chain.cc" [ 25%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.3 -o ../../../../stage/lib/libost_seq.so.2.3.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3 ../../../../stage/lib/libost_seq.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c "/<>/modules/img/base/pymod/export_mask.cc" [ 25%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/src" "/<>/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake" --color= In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_chain.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/bindings/src" && /usr/bin/c++ -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c "/<>/modules/bindings/src/wrap_tmalign.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_mask.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c "/<>/modules/img/base/pymod/export_image_list.cc" [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c "/<>/modules/mol/base/pymod/export_chain_view.cc" [ 25%] Linking CXX shared library ../../../stage/lib/libost_bindings.so cd "/<>/obj-x86_64-linux-gnu/modules/bindings/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.3 -o ../../../stage/lib/libost_bindings.so.2.3.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_image_list.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/bindings/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.3.0 ../../../stage/lib/libost_bindings.so.2.3 ../../../stage/lib/libost_bindings.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target ost_bindings [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c "/<>/modules/mol/base/pymod/export_coord_group.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_chain_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_coord_group.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c "/<>/modules/mol/base/pymod/export_coord_frame.cc" [ 25%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c "/<>/modules/img/base/pymod/export_map.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_coord_frame.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/export_map.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c "/<>/modules/mol/base/pymod/export_editors.cc" [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c "/<>/modules/mol/base/pymod/export_entity.cc" [ 26%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c "/<>/modules/img/base/pymod/wrap_img.cc" [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c "/<>/modules/mol/base/pymod/export_entity_view.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_editors.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/base/pymod/wrap_img.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_entity_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/img/_ost_img.so cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o -MF CMakeFiles/_ost_mol.dir/export_property_id.cc.o.d -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c "/<>/modules/mol/base/pymod/export_property_id.cc" cd "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/img/base/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target _ost_img make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/src" "/<>/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c "/<>/modules/db/src/sqlite_wrap.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_property_id.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c "/<>/modules/db/src/linear_indexer.cc" [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c "/<>/modules/mol/base/pymod/export_query.cc" [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c "/<>/modules/db/src/binary_container.cc" [ 26%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/c++ -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c "/<>/modules/db/src/extract_data_helper.cc" [ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_query.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c "/<>/modules/mol/base/pymod/export_residue.cc" /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c "/<>/modules/seq/alg/src/clip_alignment.cc" [ 26%] Linking CXX shared library ../../../stage/lib/libost_db.so cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.3 -o ../../../stage/lib/libost_db.so.2.3.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.3.0 ../../../stage/lib/libost_db.so.2.3 ../../../stage/lib/libost_db.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target ost_db make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 28%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c "/<>/modules/img/alg/pymod/wrap_alg.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c "/<>/modules/seq/alg/src/conservation.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_residue.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c "/<>/modules/mol/base/pymod/export_residue_view.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/alg/pymod/wrap_alg.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c "/<>/modules/seq/alg/src/contact_prediction_score.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_residue_view.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c "/<>/modules/seq/alg/src/contact_weight_matrix.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/distance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c "/<>/modules/seq/alg/src/distance_map.cc" [ 28%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c "/<>/modules/img/alg/pymod/export_filter.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c "/<>/modules/seq/alg/src/entropy.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c "/<>/modules/seq/alg/src/global_align.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/alg/pymod/export_filter.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -MF CMakeFiles/ost_seq_alg.dir/ins_del.cc.o.d -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c "/<>/modules/seq/alg/src/ins_del.cc" [ 28%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c "/<>/modules/img/alg/pymod/export_normalizer.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c "/<>/modules/seq/alg/src/local_align.cc" [ 28%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c "/<>/modules/img/alg/pymod/export_transcendentals.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/alg/pymod/export_normalizer.cc:27: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c "/<>/modules/mol/base/pymod/export_surface.cc" [ 28%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c "/<>/modules/seq/alg/src/merge_pairwise_alignments.cc" [ 28%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c "/<>/modules/img/alg/pymod/export_polar.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/alg/pymod/export_transcendentals.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c "/<>/modules/seq/alg/src/pair_subst_weight_matrix.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/img/alg/pymod/export_polar.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c "/<>/modules/seq/alg/src/semiglobal_align.cc" [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c "/<>/modules/seq/alg/src/sequence_identity.cc" [ 29%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_img_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c "/<>/modules/seq/alg/src/sequence_similarity.cc" [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c "/<>/modules/seq/alg/src/subst_weight_matrix.cc" [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c "/<>/modules/seq/alg/src/variance_map.cc" [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c "/<>/modules/seq/alg/src/hmm_pseudo_counts.cc" cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/img/alg/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target _ost_img_alg [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c "/<>/modules/mol/base/pymod/export_bounding_box.cc" [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c "/<>/modules/mol/base/pymod/export_query_view_wrapper.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_bounding_box.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c "/<>/modules/seq/alg/src/hmm_score.cc" [ 29%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c "/<>/modules/mol/base/pymod/export_torsion.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_query_view_wrapper.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c "/<>/modules/mol/base/pymod/export_visitor.cc" [ 30%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.3 -o ../../../../stage/lib/libost_seq_alg.so.2.3.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_torsion.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_visitor.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c "/<>/modules/mol/base/pymod/wrap_mol.cc" cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_seq_alg.so.2.3 ../../../../stage/lib/libost_seq_alg.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_seq_alg make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/src" "/<>/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c "/<>/modules/conop/src/processor.cc" [ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c "/<>/modules/mol/base/pymod/export_entity_property_mapper.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/wrap_mol.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c "/<>/modules/conop/src/amino_acids.cc" [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o -MF CMakeFiles/ost_conop.dir/conop.cc.o.d -o CMakeFiles/ost_conop.dir/conop.cc.o -c "/<>/modules/conop/src/conop.cc" [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c "/<>/modules/conop/src/minimal_compound_lib.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/base/pymod/export_entity_property_mapper.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib_base.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c "/<>/modules/conop/src/compound_lib_base.cc" [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o -MF CMakeFiles/ost_conop.dir/heuristic.cc.o.d -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c "/<>/modules/conop/src/heuristic.cc" [ 30%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/_ost_mol.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_mol.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o -MF CMakeFiles/ost_conop.dir/diag.cc.o.d -o CMakeFiles/ost_conop.dir/diag.cc.o -c "/<>/modules/conop/src/diag.cc" [ 30%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o -MF CMakeFiles/ost_conop.dir/rule_based.cc.o.d -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c "/<>/modules/conop/src/rule_based.cc" [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o -MF CMakeFiles/ost_conop.dir/model_check.cc.o.d -o CMakeFiles/ost_conop.dir/model_check.cc.o -c "/<>/modules/conop/src/model_check.cc" [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c "/<>/modules/conop/src/compound.cc" [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c "/<>/modules/conop/src/compound_lib.cc" [ 32%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c "/<>/modules/conop/src/ring_finder.cc" [ 32%] Linking CXX shared library ../../../stage/lib/libost_conop.so cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.3 -o ../../../stage/lib/libost_conop.so.2.3.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3 ../../../stage/lib/libost_conop.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target ost_conop make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/src" "/<>/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -MF CMakeFiles/ost_gfx.dir/bitmap_io.cc.o.d -o CMakeFiles/ost_gfx.dir/bitmap_io.cc.o -c "/<>/modules/gfx/src/bitmap_io.cc" [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -MF CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o.d -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c "/<>/modules/mol/alg/src/svd_superpose.cc" [ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c "/<>/modules/mol/alg/src/clash_score.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/mol/alg/src/svd_superpose.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o -MF CMakeFiles/ost_gfx.dir/exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c "/<>/modules/gfx/src/exporter.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/base/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 32%] Built target _ost_mol [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c "/<>/modules/gfx/src/collada_exporter.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c "/<>/modules/mol/alg/src/sec_structure_segments.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c "/<>/modules/mol/alg/src/local_dist_diff_test.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c "/<>/modules/mol/alg/src/distance_test_common.cc" [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o -MF CMakeFiles/ost_gfx.dir/color.cc.o.d -o CMakeFiles/ost_gfx.dir/color.cc.o -c "/<>/modules/gfx/src/color.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c "/<>/modules/mol/alg/src/distance_rmsd_test.cc" [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c "/<>/modules/gfx/src/primitives.cc" [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o -MF CMakeFiles/ost_gfx.dir/entity.cc.o.d -o CMakeFiles/ost_gfx.dir/entity.cc.o -c "/<>/modules/gfx/src/entity.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c "/<>/modules/mol/alg/src/superpose_frames.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c "/<>/modules/mol/alg/src/filter_clashes.cc" [ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c "/<>/modules/mol/alg/src/construct_cbeta.cc" [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -MF CMakeFiles/ost_gfx.dir/symmetry_node.cc.o.d -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c "/<>/modules/gfx/src/symmetry_node.cc" [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_node.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c "/<>/modules/gfx/src/gfx_node.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/gfx/src/gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c "/<>/modules/gfx/src/gfx_object.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c "/<>/modules/mol/alg/src/trajectory_analysis.cc" [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_prim.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c "/<>/modules/gfx/src/gfx_prim.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c "/<>/modules/mol/alg/src/structure_analysis.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c "/<>/modules/mol/alg/src/consistency_checks.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c "/<>/modules/mol/alg/src/pdbize.cc" [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c "/<>/modules/gfx/src/gfx_test_object.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c "/<>/modules/mol/alg/src/adjacency_bitmap.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c "/<>/modules/mol/alg/src/contact_overlap.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c "/<>/modules/mol/alg/src/domain_find.cc" [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c "/<>/modules/gfx/src/input.cc" [ 34%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c "/<>/modules/gfx/src/prim_list.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c "/<>/modules/mol/alg/src/similarity_matrix.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -MF CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c "/<>/modules/mol/alg/src/accessibility.cc" [ 34%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c "/<>/modules/mol/alg/src/sec_struct.cc" [ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c "/<>/modules/gfx/src/scene.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/gfx/src/scene.cc:33: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c "/<>/modules/mol/alg/src/nonstandard.cc" [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c "/<>/modules/mol/alg/src/molck.cc" [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c "/<>/modules/mol/alg/src/find_membrane.cc" [ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c "/<>/modules/mol/alg/src/entity_to_density.cc" [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c "/<>/modules/gfx/src/selection.cc" make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c "/<>/modules/seq/base/pymod/export_sequence.cc" [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c "/<>/modules/gfx/src/surface.cc" [ 37%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c "/<>/modules/seq/base/pymod/export_profile_handle.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/seq/base/pymod/export_sequence.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c "/<>/modules/gfx/src/gradient.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:9, from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9, from /<>/modules/seq/base/pymod/export_profile_handle.cc:24: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c "/<>/modules/gfx/src/gradient_manager.cc" [ 37%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/atom_scattering_properties.txt /<>/obj-x86_64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/stereo_chemical_props.txt /<>/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.3 -o ../../../../stage/lib/libost_mol_alg.so.2.3.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c "/<>/modules/gfx/src/vertex_array.cc" [ 37%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c "/<>/modules/seq/base/pymod/wrap_seq.cc" /<>/modules/gfx/src/vertex_array.cc:1311:8: warning: ‘geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)’ defined but not used [-Wunused-function] 1311 | Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s) | ^~~~~~~~~~~~~~~~ /<>/modules/gfx/src/vertex_array.cc:1239:8: warning: ‘void ost::gfx::{anonymous}::render_aalines(ost::gfx::{anonymous}::AALineList&, float, float)’ defined but not used [-Wunused-function] 1239 | void render_aalines(AALineList& line_list, float w, float r) | ^~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3 ../../../../stage/lib/libost_mol_alg.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target ost_mol_alg make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/src" "/<>/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 37%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o -MF CMakeFiles/ost_io.dir/io_manager.cc.o.d -o CMakeFiles/ost_io.dir/io_manager.cc.o -c "/<>/modules/io/src/io_manager.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/seq/base/pymod/wrap_seq.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o -MF CMakeFiles/ost_io.dir/convert.cc.o.d -o CMakeFiles/ost_io.dir/convert.cc.o -c "/<>/modules/io/src/convert.cc" /<>/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<1, 2, float>::Convert(const float&)’: /<>/modules/io/src/convert.cc:346:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 346 | reinterpret_cast(&result)[0]=reinterpret_cast(&tmp)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc:347:52: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 347 | reinterpret_cast(&result)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<1, 2, float>::ConvertIP(float*)’: /<>/modules/io/src/convert.cc:355:50: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 355 | reinterpret_cast(value)[1]=reinterpret_cast(&tmp)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static float ost::io::{anonymous}::ConvertHelper<2, 1, float>::Convert(const float&)’: /<>/modules/io/src/convert.cc:367:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 367 | reinterpret_cast(&tmp)[0]=reinterpret_cast(&value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/io/src/convert.cc: In static member function ‘static void ost::io::{anonymous}::ConvertHelper<2, 1, float>::ConvertIP(float*)’: /<>/modules/io/src/convert.cc:375:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 375 | reinterpret_cast(&tmp)[0]=reinterpret_cast(value)[1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c "/<>/modules/gfx/src/vertex_array_helper.cc" [ 37%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o -MF CMakeFiles/ost_io.dir/io_utils.cc.o.d -o CMakeFiles/ost_io.dir/io_utils.cc.o -c "/<>/modules/io/src/io_utils.cc" [ 37%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_crd_handler.cc" [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c "/<>/modules/gfx/src/material.cc" [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o -MF CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c "/<>/modules/gfx/src/povray.cc" [ 37%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_pqr_handler.cc" [ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c "/<>/modules/gfx/src/gost_exporter.cc" [ 38%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/seq/_ost_seq.so cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c "/<>/modules/gfx/src/texture.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c "/<>/modules/gfx/src/color_ops/color_op.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/by_element_color_op.cc" [ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_mae_handler.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/by_chain_color_op.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/uniform_color_op.cc" cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/base/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 39%] Built target _ost_seq [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/gradient_color_op.cc" make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 39%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c "/<>/modules/bindings/pymod/export_tmalign.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/entity_view_color_op.cc" [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/basic_gradient_color_op.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/bindings/pymod/export_tmalign.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/gradient_level_color_op.cc" [ 39%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c "/<>/modules/io/src/mol/pdb_reader.cc" [ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_pdb_handler.cc" [ 41%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c "/<>/modules/bindings/pymod/wrap_bindings.cc" [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c "/<>/modules/gfx/src/impl/entity_renderer.cc" [ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c "/<>/modules/gfx/src/impl/entity_detail.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/bindings/pymod/wrap_bindings.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_bindings.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so [ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c "/<>/modules/io/src/mol/pdb_writer.cc" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/lga.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hbplus.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/msms.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/tmtools.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/dssp.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/clustalw.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/utils.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/naccess.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hhblits.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hhblits2.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/hhblits3.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/blast.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/cadscore.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/kclust.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/ialign.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/bindings/pymod/mmseqs2.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target _ost_bindings [ 41%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_sdf_handler.cc" [ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c "/<>/modules/gfx/src/impl/cartoon_renderer.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c "/<>/modules/io/src/mol/entity_io_mmcif_handler.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c "/<>/modules/io/src/mol/sdf_reader.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c "/<>/modules/io/src/mol/sdf_writer.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c "/<>/modules/io/src/mol/save_entity.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/format/alt_sstream.hpp:22, from /usr/include/boost/format/internals.hpp:24, from /usr/include/boost/format.hpp:38, from /<>/modules/io/src/mol/sdf_writer.hh:33, from /<>/modules/io/src/mol/sdf_writer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c "/<>/modules/io/src/mol/load_entity.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c "/<>/modules/io/src/mol/surface_io_msms_handler.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c "/<>/modules/io/src/mol/load_surface.cc" [ 42%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c "/<>/modules/io/src/mol/chemdict_parser.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c "/<>/modules/io/src/mol/io_profile.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -MF CMakeFiles/ost_io.dir/mol/dcd_io.cc.o.d -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c "/<>/modules/io/src/mol/dcd_io.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/star_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c "/<>/modules/io/src/mol/star_parser.cc" In file included from /usr/include/eigen3/Eigen/Core:341, from /usr/include/eigen3/Eigen/QR:11, from /usr/include/eigen3/Eigen/SVD:11, from /<>/modules/gfx/src/impl/cartoon_renderer.cc:26: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘Eigen::internal::trmv_selector<6, 1>::run, -1, -1, false> const, -1, -1, false> const>, Eigen::Transpose, Eigen::CwiseNullaryOp, Eigen::Matrix const> const, Eigen::Transpose, -1, -1, false> const, -1, 1, true> const, -1, 1, false> const> const> const>, Eigen::Transpose, 1, -1, true>, 1, -1, false> > >(Eigen::Transpose, -1, -1, false> const, -1, -1, false> const> const&, Eigen::Transpose, Eigen::CwiseNullaryOp, Eigen::Matrix const> const, Eigen::Transpose, -1, -1, false> const, -1, 1, true> const, -1, 1, false> const> const> const> const&, Eigen::Transpose, 1, -1, true>, 1, -1, false> >&, Eigen::Transpose, 1, -1, true>, 1, -1, false> >::Scalar const&)void [clone .isra.0]’: /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result_43’ may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const float *’ to ‘Eigen::internal::triangular_matrix_vector_product::run(long, long, float const*, long, float const*, long, float*, long, float const&)’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c "/<>/modules/io/src/mol/mmcif_reader.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c "/<>/modules/io/src/mol/mmcif_info.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c "/<>/modules/io/src/mol/pdb_str.cc" [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c "/<>/modules/gfx/src/impl/custom_renderer.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c "/<>/modules/io/src/mol/stereochemical_params_reader.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o -MF CMakeFiles/ost_io.dir/mol/omf.cc.o.d -o CMakeFiles/ost_io.dir/mol/omf.cc.o -c "/<>/modules/io/src/mol/omf.cc" [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c "/<>/modules/gfx/src/impl/cpk_renderer.cc" [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c "/<>/modules/gfx/src/impl/debug_renderer.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c "/<>/modules/io/src/seq/clustal_io_handler.cc" [ 43%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c "/<>/modules/gfx/src/impl/simple_renderer.cc" [ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o -MF CMakeFiles/ost_io.dir/seq/load.cc.o.d -o CMakeFiles/ost_io.dir/seq/load.cc.o -c "/<>/modules/io/src/seq/load.cc" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o -MF CMakeFiles/ost_io.dir/seq/save.cc.o.d -o CMakeFiles/ost_io.dir/seq/save.cc.o -c "/<>/modules/io/src/seq/save.cc" [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c "/<>/modules/gfx/src/impl/sline_renderer.cc" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c "/<>/modules/io/src/seq/fasta_io_handler.cc" make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/pymod" "/<>/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c "/<>/modules/db/pymod/export_linear_db.cc" [ 44%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/db/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c "/<>/modules/db/pymod/wrap_db.cc" [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c "/<>/modules/gfx/src/impl/line_trace_renderer.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/db/pymod/export_linear_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/db/pymod/wrap_db.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c "/<>/modules/gfx/src/impl/backbone_trace.cc" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c "/<>/modules/io/src/seq/pir_io_handler.cc" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c "/<>/modules/io/src/seq/promod_io_handler.cc" [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c "/<>/modules/gfx/src/impl/connect_renderer_base.cc" [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c "/<>/modules/gfx/src/impl/trace_renderer_base.cc" [ 44%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c "/<>/modules/io/src/seq/hhm_io_handler.cc" [ 44%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/db/_ost_db.so cd "/<>/obj-x86_64-linux-gnu/modules/db/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 44%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c "/<>/modules/gfx/src/impl/mapped_property.cc" cd "/<>/obj-x86_64-linux-gnu/modules/db/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/db/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 44%] Built target _ost_db [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -MF CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c "/<>/modules/gfx/src/impl/tabulated_trig.cc" make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 46%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c "/<>/modules/seq/alg/pymod/wrap_seq_alg.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c "/<>/modules/gfx/src/impl/trace_renderer.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c "/<>/modules/gfx/src/impl/fast_spheres.cc" [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c "/<>/modules/io/src/seq/pssm_io_handler.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/seq/alg/pymod/wrap_seq_alg.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o -MF CMakeFiles/ost_io.dir/img/load_map.cc.o.d -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c "/<>/modules/io/src/img/load_map.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c "/<>/modules/gfx/src/render_options/render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c "/<>/modules/gfx/src/render_options/line_render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c "/<>/modules/gfx/src/render_options/custom_render_options.cc" [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c "/<>/modules/io/src/img/map_io_dx_handler.cc" [ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c "/<>/modules/io/src/img/map_io_spi_handler.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c "/<>/modules/gfx/src/render_options/cpk_render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c "/<>/modules/gfx/src/render_options/simple_render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c "/<>/modules/gfx/src/render_options/sline_render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c "/<>/modules/gfx/src/render_options/line_trace_render_options.cc" [ 46%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c "/<>/modules/gfx/src/render_options/cartoon_render_options.cc" [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c "/<>/modules/gfx/src/render_options/trace_render_options.cc" [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c "/<>/modules/io/src/img/map_io_situs_handler.cc" [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c "/<>/modules/gfx/src/color_ops/map_handle_color_op.cc" [ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c "/<>/modules/io/src/img/map_io_mrc_handler.cc" [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o -MF CMakeFiles/ost_gfx.dir/map_iso.cc.o.d -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c "/<>/modules/gfx/src/map_iso.cc" [ 47%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o -MF CMakeFiles/ost_gfx.dir/map_slab.cc.o.d -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c "/<>/modules/gfx/src/map_slab.cc" [ 47%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_seq_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c "/<>/modules/io/src/img/map_io_dm3_handler.cc" [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c "/<>/modules/gfx/src/impl/map_iso_gen.cc" cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/alg/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/alg/pymod/mat.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/alg/pymod/renumber.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/seq/alg/pymod/aaindex.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target _ost_seq_alg [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c "/<>/modules/io/src/img/map_io_tiff_handler.cc" In file included from /usr/include/boost/bind.hpp:30, from /<>/modules/io/src/img/map_io_tiff_handler.cc:32: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /<>/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /<>/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /<>/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /<>/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc: In member function ‘virtual void ost::io::MapIOTiffHandler::do_export(const MapHandle&, TIFF*, ost::io::TIF&) const’: /<>/modules/io/src/img/map_io_tiff_handler.cc:310:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 310 | uint16 spp=1; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:311:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 311 | uint16 fmt =0; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:312:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 312 | uint16 bpp =0 ; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:338:40: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 338 | fsr=detail::do_tiff_write; | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:343:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 343 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:348:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 348 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:363:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 363 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:371:40: warning: ‘uint8’ is deprecated [-Wdeprecated-declarations] 371 | fsr=detail::do_tiff_write; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:78:38: note: declared here 78 | typedef TIFF_MSC_DEPRECATED uint8_t uint8 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:376:40: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 376 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:381:40: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 381 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:396:40: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 396 | fsr=detail::do_tiff_write; | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:406:54: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 406 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:411:54: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 411 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:416:54: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 416 | fsc=detail::do_tiff_write,img::image_state::ComplexSpatialImageState>; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc: In member function ‘void ost::io::MapIOTiffHandler::load_image_data(TIFF*, ost::img::ImageHandle&, const ost::io::TIF&)’: /<>/modules/io/src/img/map_io_tiff_handler.cc:556:10: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:556:14: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:556:18: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:556:22: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:556:26: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:556:44: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 556 | uint16 bpp,spp,plc,ori,reso=RESUNIT_NONE,fmt=SAMPLEFORMAT_UINT; | ^~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:653:30: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 653 | detail::do_tiff_read(buf,rowcount,width,is,current_row,spp); | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:656:30: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 656 | detail::do_tiff_read(buf,rowcount,width,is,current_row,spp); | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:662:12: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 662 | uint16 photometric; | ^~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:665:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 665 | uint16* lookuptable_red; | ^~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:666:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 666 | uint16* lookuptable_green; | ^~~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:667:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 667 | uint16* lookuptable_blue; | ^~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:706:32: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 706 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:708:32: warning: ‘uint8’ is deprecated [-Wdeprecated-declarations] 708 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:78:38: note: declared here 78 | typedef TIFF_MSC_DEPRECATED uint8_t uint8 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:717:32: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 717 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:719:32: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 719 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:730:32: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 730 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:732:32: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 732 | detail::do_tiff_read(buf,rowcount,width,isr,current_row,spp); | ^~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:771:12: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 771 | uint16 photometric; | ^~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:774:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 774 | uint16* lookuptable_red; | ^~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:775:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 775 | uint16* lookuptable_green; | ^~~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_tiff_handler.cc:776:17: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 776 | uint16* lookuptable_blue; | ^~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_tiff_handler.cc:43: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 48%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c "/<>/modules/conop/pymod/wrap_conop.cc" [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c "/<>/modules/gfx/src/impl/map_iso_gen_s.cc" [ 48%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c "/<>/modules/gfx/src/impl/map_iso_gen_o.cc" [ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c "/<>/modules/io/src/img/map_io_dat_handler.cc" [ 48%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c "/<>/modules/conop/pymod/export_compound.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/wrap_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c "/<>/modules/conop/pymod/export_processor.cc" [ 50%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c "/<>/modules/gfx/src/impl/map_octree.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_compound.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/c++ -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -MF CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c "/<>/modules/gfx/src/impl/octree_isocont.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_processor.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c "/<>/modules/io/src/img/map_io_ipl_handler.cc" [ 50%] Linking CXX shared library ../../../stage/lib/libost_gfx.so cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/test_texture.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/textures/test_texture.png cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/glyph_texture.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.3 -o ../../../stage/lib/libost_gfx.so.2.3.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c "/<>/modules/io/src/img/map_io_jpk_handler.cc" [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c "/<>/modules/io/src/img/map_io_nanoscope_handler.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh:32, from /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/alg_transform.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/transform.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /<>/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /<>/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /<>/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /<>/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_jpk_handler.cc: In member function ‘virtual void ost::io::MapIOJpkHandler::Import(ost::img::ImageHandle&, const boost::filesystem::path&, const ost::io::ImageFormatBase&)’: /<>/modules/io/src/img/map_io_jpk_handler.cc:128:11: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 128 | uint16* reflect; | ^~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_jpk_handler.cc:129:11: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 129 | uint32* dummy; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_jpk_handler.cc: In member function ‘virtual void ost::io::MapIOJpkHandler::Import(ost::img::MapHandle&, std::istream&, const ost::io::ImageFormatBase&)’: /<>/modules/io/src/img/map_io_jpk_handler.cc:223:11: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 223 | uint16* reflect; | ^~~~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /<>/modules/io/src/img/map_io_jpk_handler.cc:224:11: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 224 | uint32* dummy; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/map_io_jpk_handler.cc:38: /usr/include/x86_64-linux-gnu/tiff.h:84:38: note: declared here 84 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c "/<>/modules/conop/pymod/export_heuristic.cc" [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c "/<>/modules/conop/pymod/export_amino_acids.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_heuristic.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.3.0 ../../../stage/lib/libost_gfx.so.2.3 ../../../stage/lib/libost_gfx.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target ost_gfx [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c "/<>/modules/conop/pymod/export_conop.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_amino_acids.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c "/<>/modules/io/src/img/map_io_png_handler.cc" [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c "/<>/modules/io/src/img/map_io_df3_handler.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_conop.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o -MF CMakeFiles/ost_io.dir/img/image_format.cc.o.d -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c "/<>/modules/io/src/img/image_format.cc" [ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/c++ -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o -MF CMakeFiles/ost_io.dir/img/tiff_util.cc.o.d -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c "/<>/modules/io/src/img/tiff_util.cc" [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c "/<>/modules/conop/pymod/export_diag.cc" [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c "/<>/modules/conop/pymod/export_rule_based.cc" In file included from /<>/modules/io/src/img/tiff_util.cc:26: /<>/modules/io/src/img/tiff_util.hh:51:40: warning: ‘int32’ is deprecated [-Wdeprecated-declarations] 51 | class complexint32:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED int32_t int32 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.cc:26: /<>/modules/io/src/img/tiff_util.hh:61:40: warning: ‘int16’ is deprecated [-Wdeprecated-declarations] 61 | class complexint16:public std::complex{ | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:80:38: note: declared here 80 | typedef TIFF_MSC_DEPRECATED int16_t int16 TIFF_GCC_DEPRECATED; | ^~~~~ In file included from /<>/modules/io/src/img/tiff_util.cc:26: /<>/modules/io/src/img/tiff_util.hh:71:39: warning: ‘int8’ is deprecated [-Wdeprecated-declarations] 71 | class complexint8:public std::complex{ | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:77:38: note: declared here 77 | typedef TIFF_MSC_DEPRECATED int8_t int8 TIFF_GCC_DEPRECATED; | ^~~~ In file included from /<>/modules/io/src/img/tiff_util.cc:26: /<>/modules/io/src/img/tiff_util.hh:105:114: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 105 | void do_tiff_read(tdata_t buf,unsigned int rps, unsigned int width, IST* is,unsigned int& current_row, uint16 spp) | ^ In file included from /<>/modules/io/src/img/tiff_util.hh:24, from /<>/modules/io/src/img/tiff_util.cc:26: /usr/include/x86_64-linux-gnu/tiff.h:81:38: note: declared here 81 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ [ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c "/<>/modules/conop/pymod/export_ring_finder.cc" [ 50%] Linking CXX shared library ../../../stage/lib/libost_io.so cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.3 -o ../../../stage/lib/libost_io.so.2.3.0 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/mol/omf.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_diag.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_rule_based.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/conop/pymod/export_ring_finder.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/conop/_ost_conop.so cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_conop.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/conop/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/conop/pymod/cleanup.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target _ost_conop make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake" --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c "/<>/modules/mol/alg/pymod/wrap_mol_alg.cc" cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c "/<>/modules/gfx/pymod/wrap_gfx.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c "/<>/modules/mol/alg/pymod/export_svd_superpose.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/wrap_mol_alg.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_svd_superpose.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/wrap_gfx.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.3.0 ../../../stage/lib/libost_io.so.2.3 ../../../stage/lib/libost_io.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target ost_io [ 50%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c "/<>/modules/gfx/pymod/export_scene.cc" make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/src" "/<>/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/chemdict_tool.dir/build.make modules/conop/src/CMakeFiles/chemdict_tool.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c "/<>/modules/conop/src/chemdict_tool.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_scene.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c "/<>/modules/mol/alg/pymod/export_clash.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_clash.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c "/<>/modules/mol/alg/pymod/export_trajectory_analysis.cc" [ 50%] Linking CXX executable ../../../stage/bin/chemdict_tool cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_io.so.2.3.0 ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target chemdict_tool make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Generating tools/moc_tool_options_win.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters" [ 50%] Generating data_viewer/moc_argand.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters" [ 50%] Generating data_viewer/moc_data_viewer.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters" [ 50%] Generating data_viewer/moc_data_viewer_panel_base.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters" [ 51%] Generating data_viewer/moc_fft_panel.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters" [ 51%] Generating data_viewer/moc_info_panel.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_trajectory_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Generating data_viewer/moc_null_overlay.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters" [ 51%] Generating data_viewer/moc_overlay_base.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters" [ 51%] Generating data_viewer/moc_overlay_manager_gui.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters" [ 51%] Generating data_viewer/moc_pointlist_overlay_base.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters" [ 51%] Generating messages/moc_log_reader.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters" [ 51%] Generating messages/moc_message_box_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters" [ 51%] Generating messages/moc_message_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters" [ 51%] Generating moc_dock_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters" [ 51%] Generating moc_file_browser.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters" [ 51%] Generating moc_file_type_dialog.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters" [ 51%] Generating moc_file_viewer.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters" [ 51%] Generating moc_gl_canvas.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters" [ 52%] Generating moc_gl_win.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters" [ 52%] Generating moc_gosty_app.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters" [ 52%] Generating moc_main.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp_parameters" [ 52%] Generating moc_main_area.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters" [ 52%] Generating moc_main_window.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters" [ 52%] Generating moc_perspective.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters" [ 52%] Generating moc_scene_menu.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters" [ 52%] Generating moc_scene_selection.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters" [ 52%] Generating moc_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters" [ 52%] Generating moc_widget_geom_handler.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters" [ 53%] Generating moc_widget_pool.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters" [ 53%] Generating panels/moc_bottom_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters" [ 53%] Generating panels/moc_button_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters" [ 53%] Generating panels/moc_button_box.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters" [ 53%] Generating panels/moc_drop_box.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters" [ 53%] Generating panels/moc_event_button.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters" [ 53%] Generating panels/moc_panel_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters" [ 53%] Generating panels/moc_panel_bar_widget_holder.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters" [ 55%] Generating panels/moc_panel_manager.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters" [ 55%] Generating panels/moc_panel_widget_container.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters" [ 55%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c "/<>/modules/gfx/pymod/export_gfx_node.cc" [ 55%] Generating panels/moc_side_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters" [ 55%] Generating panels/moc_splitter_panel_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters" [ 55%] Generating panels/moc_tabbed_panel_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters" [ 55%] Generating python_shell/moc_completer_base.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters" [ 55%] Generating python_shell/moc_gutter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters" [ 55%] Generating python_shell/moc_main_thread_runner.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters" [ 55%] Generating python_shell/moc_output_redirector.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters" [ 55%] Generating python_shell/moc_path_completer.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters" [ 55%] Generating python_shell/moc_python_completer.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters" [ 55%] Generating python_shell/moc_python_interpreter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters" [ 55%] Generating python_shell/moc_python_interpreter_worker.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters" [ 56%] Generating python_shell/moc_python_namespace_tree_model.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters" [ 56%] Generating python_shell/moc_python_shell.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters" [ 56%] Generating python_shell/moc_python_shell_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters" [ 56%] Generating python_shell/moc_state.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters" [ 56%] Generating python_shell/moc_state_machine.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters" [ 56%] Generating python_shell/moc_text_logger.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters" [ 56%] Generating python_shell/moc_transition.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters" [ 56%] Generating python_shell/moc_transition_guard.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters" [ 56%] Generating scene_win/moc_context_menu.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters" [ 56%] Generating scene_win/moc_current_selection_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters" [ 57%] Generating scene_win/moc_custom_part_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters" [ 57%] Generating scene_win/moc_entity_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters" [ 57%] Generating scene_win/moc_entity_part_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters" [ 57%] Generating scene_win/moc_gfx_scene_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters" [ 57%] Generating scene_win/moc_label_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters" [ 57%] Generating scene_win/moc_render_mode_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters" [ 57%] Generating scene_win/moc_render_modes_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters" [ 57%] Generating scene_win/moc_root_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters" [ 57%] Generating scene_win/moc_scene_node.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters" [ 57%] Generating scene_win/moc_scene_win.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters" [ 57%] Generating scene_win/moc_scene_win_model.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters" [ 57%] Generating sequence_viewer/moc_align_properties_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters" [ 57%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c "/<>/modules/mol/alg/pymod/export_structure_analysis.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_gfx_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Generating sequence_viewer/moc_alignment_view_object.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters" [ 57%] Generating sequence_viewer/moc_background_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters" [ 57%] Generating sequence_viewer/moc_base_row.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters" [ 58%] Generating sequence_viewer/moc_base_view_object.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters" [ 58%] Generating sequence_viewer/moc_conservation_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters" [ 58%] Generating sequence_viewer/moc_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters" [ 58%] Generating sequence_viewer/moc_secstr_row.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters" [ 58%] Generating sequence_viewer/moc_seq_secstr_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters" [ 60%] Generating sequence_viewer/moc_seq_selection_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters" [ 60%] Generating sequence_viewer/moc_seq_text_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters" [ 60%] Generating sequence_viewer/moc_sequence_delegate.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters" [ 60%] Generating sequence_viewer/moc_sequence_model.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_structure_analysis.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 60%] Generating sequence_viewer/moc_sequence_row.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters" /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Generating sequence_viewer/moc_sequence_search_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters" [ 60%] Generating sequence_viewer/moc_sequence_table_view.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters" [ 60%] Generating sequence_viewer/moc_sequence_view_object.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters" [ 60%] Generating sequence_viewer/moc_sequence_viewer.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters" [ 60%] Generating sequence_viewer/moc_tick_painter.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters" [ 60%] Generating sequence_viewer/moc_title_row.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters" [ 60%] Generating tools/moc_measure_tool.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters" [ 60%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c "/<>/modules/gfx/pymod/export_symmetry_node.cc" [ 61%] Generating tools/moc_tool.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters" [ 61%] Generating tools/moc_tool_bar.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters" [ 61%] Generating tools/moc_tool_manager.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters" [ 61%] Generating tools/moc_tool_option.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters" [ 61%] Generating tools/moc_tool_option_group.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters" [ 61%] Generating tools/moc_tool_options.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters" [ 61%] Generating tools/moc_tool_options_widget.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters" cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/src" "/<>/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_browser.cpp" [ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_symmetry_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_file_viewer.cpp" [ 61%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c "/<>/modules/mol/alg/pymod/export_contact_overlap.cc" [ 62%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp" make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c "/<>/modules/io/tests/test_mae_standalone.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gl_canvas.hh:23, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gl_canvas.hh:23, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 64%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c "/<>/modules/gfx/pymod/export_gfx_obj.cc" [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gl_win.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_contact_overlap.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Linking CXX executable ../../../stage/bin/test_mae_standalone cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" ../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_menu.cpp" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 64%] Built target test_mae_standalone [ 64%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o -MF CMakeFiles/_ost_gfx.dir/export_entity.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c "/<>/modules/gfx/pymod/export_entity.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_gfx_obj.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_entity.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/gosty_app.hh:28, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty_app.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c "/<>/modules/mol/alg/pymod/export_accessibility.cc" [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp" make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 64%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c "/<>/modules/mol/alg/src/lddt.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_accessibility.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:23, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_area.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_area.cpp" [ 65%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c "/<>/modules/mol/alg/pymod/export_sec_structure.cc" [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -MF CMakeFiles/ost_gui.dir/moc_perspective.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_perspective.cpp" [ 65%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c "/<>/modules/gfx/pymod/export_surface.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_sec_structure.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp" In file included from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/dock_widget.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_dock_widget.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 65%] Linking CXX executable ../../../../stage/bin/lddt cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/lddt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_io.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_window.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_surface.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/obj-x86_64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main_window.hh:35, from /<>/obj-x86_64-linux-gnu/modules/gui/src/moc_main_window.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_scene_selection.cpp" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target lddt make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -MF CMakeFiles/ost_mol_mm.dir/forcefield.cc.o.d -o CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -c "/<>/modules/mol/mm/src/forcefield.cc" [ 65%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c "/<>/modules/mol/alg/pymod/export_non_standard.cc" [ 65%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget.cpp" [ 65%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primitives.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c "/<>/modules/gfx/pymod/export_primitives.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_non_standard.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp" [ 66%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c "/<>/modules/mol/alg/pymod/export_molck.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_primitives.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_widget_pool.cpp" [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primlist.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c "/<>/modules/gfx/pymod/export_primlist.cc" [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_molck.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -MF CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o.d -o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o -c "/<>/modules/mol/mm/src/ff_reader.cc" [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_primlist.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp" [ 66%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c "/<>/modules/mol/alg/pymod/export_membrane.cc" [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp" [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c "/<>/modules/gfx/pymod/export_scene_observer.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_membrane.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_scene_observer.cc:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp" [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -MF CMakeFiles/_ost_gfx.dir/export_render_options.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c "/<>/modules/gfx/pymod/export_render_options.cc" [ 66%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c "/<>/modules/mol/alg/pymod/export_entity_to_density.cc" [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -MF CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o.d -o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -c "/<>/modules/mol/mm/src/buildingblock.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_render_options.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/alg/pymod/export_entity_to_density.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libsqlite3.so [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp" [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -c "/<>/modules/mol/mm/src/gromacs_block_modifiers.cc" [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c "/<>/modules/gfx/pymod/export_color.cc" [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_color.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/views.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/superpose.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/qsscoring.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/trajectory_analysis.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/structure_analysis.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)" [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -c "/<>/modules/mol/mm/src/heuristic_block_modifiers.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/helix_kinks.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/alg/pymod/hbond.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 66%] Built target _ost_mol_alg [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o -MF CMakeFiles/ost_mol_mm.dir/interaction.cc.o.d -o CMakeFiles/ost_mol_mm.dir/interaction.cc.o -c "/<>/modules/mol/mm/src/interaction.cc" [ 66%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gradient.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c "/<>/modules/gfx/pymod/export_gradient.cc" [ 66%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o -MF CMakeFiles/ost_mol_mm.dir/simulation.cc.o.d -o CMakeFiles/ost_mol_mm.dir/simulation.cc.o -c "/<>/modules/mol/mm/src/simulation.cc" [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp" make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/tools/molck" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/tools/molck" "/<>/obj-x86_64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 67%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o cd "/<>/obj-x86_64-linux-gnu/tools/molck" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c "/<>/tools/molck/main.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_gradient.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp" [ 67%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c "/<>/modules/gfx/pymod/export_color_ops.cc" [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp" [ 67%] Linking CXX executable ../../stage/bin/molck cd "/<>/obj-x86_64-linux-gnu/tools/molck" && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../stage/lib/libost_io.so.2.3.0 ../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../stage/lib/libost_seq_alg.so.2.3.0 ../../stage/lib/libost_conop.so.2.3.0 ../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.3.0 ../../stage/lib/libost_mol.so.2.3.0 ../../stage/lib/libost_img_alg.so.2.3.0 ../../stage/lib/libost_img.so.2.3.0 ../../stage/lib/libost_info.so.2.3.0 ../../stage/lib/libost_base.so.2.3.0 ../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 67%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o -MF CMakeFiles/ost_mol_mm.dir/modeller.cc.o.d -o CMakeFiles/ost_mol_mm.dir/modeller.cc.o -c "/<>/modules/mol/mm/src/modeller.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_color_ops.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 67%] Built target molck [ 67%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c "/<>/modules/gfx/pymod/export_glwin_base.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_glwin_base.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp" [ 69%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -MF CMakeFiles/_ost_gfx.dir/export_exporter.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c "/<>/modules/gfx/pymod/export_exporter.cc" [ 69%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -MF CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o.d -o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -c "/<>/modules/mol/mm/src/state_extractor.cc" [ 69%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o -MF CMakeFiles/ost_mol_mm.dir/observer.cc.o.d -o CMakeFiles/ost_mol_mm.dir/observer.cc.o -c "/<>/modules/mol/mm/src/observer.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_exporter.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp" [ 69%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c "/<>/modules/gfx/pymod/export_bitmap.cc" make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/pymod" "/<>/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 69%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c "/<>/modules/io/pymod/wrap_io.cc" [ 70%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/system_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -c "/<>/modules/mol/mm/src/system_creator.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_bitmap.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/io/pymod/wrap_io.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o -MF CMakeFiles/_ost_gfx.dir/export_map.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c "/<>/modules/gfx/pymod/export_map.cc" /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gfx/pymod/export_map.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -c "/<>/modules/mol/mm/src/topology_creator.cc" [ 70%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -MF CMakeFiles/_ost_io.dir/export_pdb_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c "/<>/modules/io/pymod/export_pdb_io.cc" [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp" [ 70%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/pymod/gradients.xml /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/gradients.xml cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_gfx.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/io/pymod/export_pdb_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp" [ 70%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology.cc.o -c "/<>/modules/mol/mm/src/topology.cc" [ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp" [ 71%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c "/<>/modules/io/pymod/export_mmcif_io.cc" cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gfx/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gfx/pymod/py_gfx_obj.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 71%] Built target _ost_gfx [ 73%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_omf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_omf_io.cc.o -c "/<>/modules/io/pymod/export_omf_io.cc" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/io/pymod/export_mmcif_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/io/pymod/export_omf_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/c++ -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o -MF CMakeFiles/ost_mol_mm.dir/steep.cc.o.d -o CMakeFiles/ost_mol_mm.dir/steep.cc.o -c "/<>/modules/mol/mm/src/steep.cc" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp" [ 73%] Linking CXX shared library ../../../../stage/lib/libost_mol_mm.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/AMBER03.dat /<>/obj-x86_64-linux-gnu/stage/share/openstructure/forcefields/AMBER03.dat cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/CHARMM27.dat /<>/obj-x86_64-linux-gnu/stage/share/openstructure/forcefields/CHARMM27.dat cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -Wl,-soname,libost_mol_mm.so.2.3 -o ../../../../stage/lib/libost_mol_mm.so.2.3.0 CMakeFiles/ost_mol_mm.dir/forcefield.cc.o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/interaction.cc.o CMakeFiles/ost_mol_mm.dir/simulation.cc.o CMakeFiles/ost_mol_mm.dir/modeller.cc.o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o CMakeFiles/ost_mol_mm.dir/observer.cc.o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology.cc.o CMakeFiles/ost_mol_mm.dir/steep.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libOpenMM.so ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 73%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o -MF CMakeFiles/_ost_io.dir/export_map_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c "/<>/modules/io/pymod/export_map_io.cc" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/io/pymod/export_map_io.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_mm.so.2.3.0 ../../../../stage/lib/libost_mol_mm.so.2.3 ../../../../stage/lib/libost_mol_mm.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 73%] Built target ost_mol_mm [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp" [ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_shell_widget.hh:28, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp" [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition.hh:23, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/../../../../../modules/gui/src/python_shell/transition_guard.hh:24, from /<>/obj-x86_64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp:10: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp" [ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp" [ 76%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/io/_ost_io.so cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_omf_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp" [ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp" In file included from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_bar.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_bar.hh:29, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp" [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_manager.hh:24, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_manager.hh:24, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp" cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/io/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/io/pymod/remote.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/io/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/io/pymod/repository.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 78%] Built target _ost_io make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 79%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -c "/<>/modules/mol/mm/pymod/export_forcefield.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/measure_tool.hh:26, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/measure_tool.hh:26, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_options_win.hh:27, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/../../../../../modules/gui/src/tools/tool_options_win.hh:27, from /<>/obj-x86_64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 79%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp" cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -c "/<>/modules/mol/mm/pymod/export_settings.cc" [ 79%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -c "/<>/modules/mol/mm/pymod/export_simulation.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_forcefield.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_settings.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_simulation.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp" [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp" In file included from /<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/../../../../../modules/gui/src/data_viewer/data_viewer.hh:37, from /<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp:10: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 79%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -c "/<>/modules/mol/mm/pymod/export_openmm.cc" [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp" [ 79%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -c "/<>/modules/mol/mm/pymod/export_observers.cc" [ 79%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -c "/<>/modules/mol/mm/pymod/export_ff_reader.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_openmm.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_observers.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_ff_reader.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -c "/<>/modules/mol/mm/pymod/export_interaction.cc" [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -c "/<>/modules/mol/mm/pymod/export_buildingblock.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_interaction.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -c "/<>/modules/mol/mm/pymod/export_block_modifiers.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_buildingblock.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_block_modifiers.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o -MF CMakeFiles/ost_gui.dir/thin_splitter.cc.o.d -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c "/<>/modules/gui/src/thin_splitter.cc" [ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o -MF CMakeFiles/ost_gui.dir/perspective.cc.o.d -o CMakeFiles/ost_gui.dir/perspective.cc.o -c "/<>/modules/gui/src/perspective.cc" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -c "/<>/modules/mol/mm/pymod/export_topology.cc" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -c "/<>/modules/mol/mm/pymod/export_modeller.cc" [ 80%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -c "/<>/modules/mol/mm/pymod/wrap_mol_mm.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_topology.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/export_modeller.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o -MF CMakeFiles/ost_gui.dir/widget_registry.cc.o.d -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c "/<>/modules/gui/src/widget_registry.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/mol/mm/pymod/wrap_mol_mm.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o -MF CMakeFiles/ost_gui.dir/file_browser.cc.o.d -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c "/<>/modules/gui/src/file_browser.cc" [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -MF CMakeFiles/ost_gui.dir/file_type_dialog.cc.o.d -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c "/<>/modules/gui/src/file_type_dialog.cc" [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o -MF CMakeFiles/ost_gui.dir/file_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c "/<>/modules/gui/src/file_viewer.cc" [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o -MF CMakeFiles/ost_gui.dir/main.cc.o.d -o CMakeFiles/ost_gui.dir/main.cc.o -c "/<>/modules/gui/src/main.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/file_browser.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(QWidget*)’: /<>/modules/gui/src/file_browser.cc:62:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 62 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /<>/modules/gui/src/file_browser.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ /<>/modules/gui/src/file_browser.cc: In constructor ‘ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)’: /<>/modules/gui/src/file_browser.cc:102:13: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 102 | model_(new QDirModel), | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /<>/modules/gui/src/file_browser.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o -MF CMakeFiles/ost_gui.dir/gl_canvas.cc.o.d -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c "/<>/modules/gui/src/gl_canvas.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/main.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o -MF CMakeFiles/ost_gui.dir/dock_widget.cc.o.d -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c "/<>/modules/gui/src/dock_widget.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/tool_options_win.hh:27, from /<>/modules/gui/src/main.cc:31: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/main.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /<>/modules/gui/src/main.cc: In static member function ‘static QSize ost::gui::GostyMainWindow::GetDefaultSize()’: /<>/modules/gui/src/main.cc:59:64: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 59 | QRect desktop_geom=QApplication::desktop()->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<>/modules/gui/src/main.cc:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ In file included from /<>/modules/gui/src/dock_widget.cc:25: /<>/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdockwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDockWidget:1, from /<>/modules/gui/src/dock_widget.hh:31, from /<>/modules/gui/src/dock_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o -MF CMakeFiles/ost_gui.dir/main_window.cc.o.d -o CMakeFiles/ost_gui.dir/main_window.cc.o -c "/<>/modules/gui/src/main_window.cc" [ 82%] Linking CXX shared module ../../../../stage/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_mm.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../../stage/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../../stage/lib/libost_mol_mm.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../../stage/lib/libost_io.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o -MF CMakeFiles/ost_gui.dir/gl_win.cc.o.d -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c "/<>/modules/gui/src/gl_win.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/weak_ptr.hpp:17, from /usr/include/boost/smart_ptr/enable_shared_from_this.hpp:16, from /usr/include/boost/enable_shared_from_this.hpp:16, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:28, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:29, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/gl_canvas.cc: In member function ‘void ost::gui::GLCanvas::HandleMouseMoveEvent(QMouseEvent*)’: /<>/modules/gui/src/gl_canvas.cc:373:32: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 373 | if (event->buttons() & Qt::MidButton) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /<>/modules/gui/src/gl_canvas.cc:399:37: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 399 | } else if (event->buttons() & Qt::MidButton) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /<>/modules/gui/src/gl_canvas.cc: In member function ‘virtual void ost::gui::GLCanvas::wheelEvent(QWheelEvent*)’: /<>/modules/gui/src/gl_canvas.cc:488:50: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 488 | 0.2*static_cast(-event->delta())); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QMouseEvent:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:25, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/gl_canvas.hh:23, from /<>/modules/gui/src/gl_canvas.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ In file included from /<>/modules/gui/src/main_window.cc:25: /<>/modules/gui/src/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/modules/gui/src/main_window.hh:35, from /<>/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /<>/modules/gui/src/main_window.cc:26: /<>/modules/gui/src/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/modules/gui/src/main_window.hh:35, from /<>/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /<>/modules/gui/src/main_window.cc: In member function ‘void ost::gui::MainWindow::AddDockWidget(QWidget*, const QString&, bool, int)’: /<>/modules/gui/src/main_window.cc:60:47: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 60 | DockWidget* dock = new DockWidget(name, this); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/modules/gui/src/main_window.hh:35, from /<>/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /<>/modules/gui/src/main_window.cc:71:33: warning: ‘QVariant qVariantFromValue(const T&) [with T = QDockWidget*]’ is deprecated: Use QVariant::fromValue() instead. [-Wdeprecated-declarations] 71 | act->setData(qVariantFromValue((QDockWidget*)dock)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qaction.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmenu.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMenu:1, from /<>/modules/gui/src/main_window.hh:36, from /<>/modules/gui/src/main_window.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qvariant.h:530:17: note: declared here 530 | inline QVariant qVariantFromValue(const T &t) | ^~~~~~~~~~~~~~~~~ [ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c "/<>/modules/gui/src/scene_menu.cc" [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o -MF CMakeFiles/ost_gui.dir/widget.cc.o.d -o CMakeFiles/ost_gui.dir/widget.cc.o -c "/<>/modules/gui/src/widget.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o -MF CMakeFiles/ost_gui.dir/admin.cc.o.d -o CMakeFiles/ost_gui.dir/admin.cc.o -c "/<>/modules/gui/src/admin.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /<>/modules/gui/src/gl_win.cc:25: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/gl_win.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o -MF CMakeFiles/ost_gui.dir/widget_pool.cc.o.d -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c "/<>/modules/gui/src/widget_pool.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_menu.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c "/<>/modules/gui/src/messages/message_widget.cc" [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c "/<>/modules/gui/src/messages/message_box_widget.cc" cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/mm/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/mol/mm/pymod/antechamber.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/mol/mm/./antechamber.pyc\",\"antechamber.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 83%] Built target _ost_mol_mm [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -MF CMakeFiles/ost_gui.dir/messages/log_reader.cc.o.d -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c "/<>/modules/gui/src/messages/log_reader.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/messages/message_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/align_properties_painter.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/messages/message_box_widget.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c "/<>/modules/gui/src/sequence_viewer/base_row.cc" [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/background_painter.cc" [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/conservation_painter.cc" [ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c "/<>/modules/gui/src/sequence_viewer/secstr_row.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/seq_secstr_painter.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/seq_selection_painter.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/seq_text_painter.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_delegate.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_model.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_row.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_search_bar.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_table_view.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_viewer.cc" /<>/modules/gui/src/sequence_viewer/sequence_table_view.cc: In member function ‘virtual int ost::gui::SequenceTableView::sizeHintForColumn(int) const’: /<>/modules/gui/src/sequence_viewer/sequence_table_view.cc:480:35: warning: ‘int QFontMetrics::width(QChar) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 480 | return this->fontMetrics().width('W'); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainter.h:59, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainter:1, from /<>/modules/gui/src/sequence_viewer/painter.hh:30, from /<>/modules/gui/src/sequence_viewer/base_row.hh:27, from /<>/modules/gui/src/sequence_viewer/base_view_object.hh:27, from /<>/modules/gui/src/sequence_viewer/sequence_model.hh:35, from /<>/modules/gui/src/sequence_viewer/sequence_delegate.hh:28, from /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh:29, from /<>/modules/gui/src/sequence_viewer/sequence_table_view.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c "/<>/modules/gui/src/sequence_viewer/tick_painter.cc" [ 84%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c "/<>/modules/gui/src/sequence_viewer/title_row.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c "/<>/modules/gui/src/sequence_viewer/alignment_view_object.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc: In member function ‘void ost::gui::SequenceViewer::MouseWheelEvent(QWheelEvent*)’: /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc:298:27: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 298 | int delta = event->delta(); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc:299:25: warning: ‘Qt::Orientation QWheelEvent::orientation() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 299 | if (event->orientation() == Qt::Vertical) { | ~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QWheelEvent:1, from /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh:32, from /<>/modules/gui/src/sequence_viewer/sequence_viewer.cc:42: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:222:28: note: declared here 222 | inline Qt::Orientation orientation() const { return qt4O; } | ^~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c "/<>/modules/gui/src/sequence_viewer/base_view_object.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c "/<>/modules/gui/src/sequence_viewer/sequence_view_object.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c "/<>/modules/gui/src/gosty_app.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o -MF CMakeFiles/ost_gui.dir/main_area.cc.o.d -o CMakeFiles/ost_gui.dir/main_area.cc.o -c "/<>/modules/gui/src/main_area.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -MF CMakeFiles/ost_gui.dir/widget_state_saver.cc.o.d -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c "/<>/modules/gui/src/widget_state_saver.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/modules/gui/src/gosty_app.hh:28, from /<>/modules/gui/src/gosty_app.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c "/<>/modules/gui/src/scene_selection.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -MF CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o.d -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c "/<>/modules/gui/src/widget_geom_handler.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /<>/modules/gui/src/gosty_app.cc:23: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/modules/gui/src/gosty_app.hh:28, from /<>/modules/gui/src/gosty_app.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/src/gosty_app.cc:31: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/modules/gui/src/gosty_app.hh:28, from /<>/modules/gui/src/gosty_app.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o -MF CMakeFiles/ost_gui.dir/file_loader.cc.o.d -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c "/<>/modules/gui/src/file_loader.cc" [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c "/<>/modules/gui/src/panels/button_bar.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/drop_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c "/<>/modules/gui/src/panels/drop_box.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c "/<>/modules/gui/src/panels/panel_bar.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/src/scene_selection.cc:34: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_selection.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c "/<>/modules/gui/src/panels/bottom_bar.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/panels/panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/src/file_loader.cc:51: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/file_loader.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c "/<>/modules/gui/src/panels/button_box.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o -MF CMakeFiles/ost_gui.dir/panels/event_button.cc.o.d -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c "/<>/modules/gui/src/panels/event_button.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c "/<>/modules/gui/src/panels/panel_manager.cc" /<>/modules/gui/src/panels/event_button.cc: In member function ‘virtual void ost::gui::EventButton::mouseMoveEvent(QMouseEvent*)’: /<>/modules/gui/src/panels/event_button.cc:50:15: warning: ‘Qt::DropAction QDrag::start(Qt::DropActions)’ is deprecated: Use QDrag::exec() instead [-Wdeprecated-declarations] 50 | drag->start(Qt::MoveAction); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QDrag:1, from /<>/modules/gui/src/panels/event_button.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtGui/qdrag.h:79:20: note: declared here 79 | Qt::DropAction start(Qt::DropActions supportedActions = Qt::CopyAction); | ^~~~~ [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c "/<>/modules/gui/src/panels/panel_widget_container.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c "/<>/modules/gui/src/panels/panel_bar_widget_holder.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c "/<>/modules/gui/src/panels/side_bar.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c "/<>/modules/gui/src/panels/splitter_panel_bar.cc" [ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c "/<>/modules/gui/src/panels/tabbed_panel_bar.cc" [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c "/<>/modules/gui/src/tools/tool_option_group.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/panels/panel_bar_widget_holder.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c "/<>/modules/gui/src/tools/tool_options.cc" [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c "/<>/modules/gui/src/tools/tool_option.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/panels/tabbed_panel_bar.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c "/<>/modules/gui/src/tools/tool_manager.cc" [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c "/<>/modules/gui/src/tools/tool_options_win.cc" [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c "/<>/modules/gui/src/tools/tool.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/tool_manager.hh:24, from /<>/modules/gui/src/tools/tool_manager.cc:19: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/tool_manager.hh:24, from /<>/modules/gui/src/tools/tool_manager.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -MF CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o.d -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c "/<>/modules/gui/src/tools/mouse_event.cc" In file included from /<>/modules/gui/src/tools/tool.hh:30, from /<>/modules/gui/src/tools/tool.cc:19: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/modules/gui/src/tools/tool.hh:30, from /<>/modules/gui/src/tools/tool.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF CMakeFiles/ost_gui.dir/tools/manipulator.cc.o.d -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c "/<>/modules/gui/src/tools/manipulator.cc" [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c "/<>/modules/gui/src/tools/tool_options_widget.cc" In file included from /<>/modules/gui/src/tools/mouse_event.cc:19: /<>/modules/gui/src/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/modules/gui/src/tools/mouse_event.hh:24, from /<>/modules/gui/src/tools/mouse_event.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c "/<>/modules/gui/src/tools/tool_bar.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /<>/modules/gui/src/tools/tool_options_win.cc:21: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/tool_options_win.cc:20: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c "/<>/modules/gui/src/tools/selection_tool.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c "/<>/modules/gui/src/tools/measure_tool.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/manipulator.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/tool_bar.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/manipulator.hh:29, from /<>/modules/gui/src/tools/manipulator.cc:29: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/manipulator.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/selection_tool.hh:26, from /<>/modules/gui/src/tools/selection_tool.cc:22: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/selection_tool.hh:26, from /<>/modules/gui/src/tools/selection_tool.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/measure_tool.hh:26, from /<>/modules/gui/src/tools/measure_tool.cc:22: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/measure_tool.hh:26, from /<>/modules/gui/src/tools/measure_tool.cc:22: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh:24, from /<>/modules/gui/src/tools/tool_bar.cc:22: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/tool_bar.cc:20: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c "/<>/modules/gui/src/python_shell/gutter.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c "/<>/modules/gui/src/python_shell/main_thread_runner.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c "/<>/modules/gui/src/python_shell/output_redirector.cc" /<>/modules/gui/src/python_shell/output_redirector.cc: In member function ‘void ost::gui::OutputRedirector::Write(const String&)’: /<>/modules/gui/src/python_shell/output_redirector.cc:42:22: warning: ‘int QTime::elapsed() const’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 42 | if(timer_.elapsed()>1000){ | ~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/modules/gui/src/python_shell/output_redirector.hh:30, from /<>/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ /<>/modules/gui/src/python_shell/output_redirector.cc:46:21: warning: ‘int QTime::restart()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 46 | timer_.restart(); | ~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/modules/gui/src/python_shell/output_redirector.hh:30, from /<>/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here 236 | QT_DEPRECATED_X("Use QElapsedTimer instead") int restart(); | ^~~~~~~ /<>/modules/gui/src/python_shell/output_redirector.cc:52:17: warning: ‘void QTime::start()’ is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 52 | timer_.start(); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/modules/gui/src/python_shell/output_redirector.hh:30, from /<>/modules/gui/src/python_shell/output_redirector.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c "/<>/modules/gui/src/python_shell/completer_base.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c "/<>/modules/gui/src/python_shell/dir_model.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:28, from /<>/modules/gui/src/python_shell/gutter.cc:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/main_thread_runner.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/python_shell/dir_model.cc: In constructor ‘ost::gui::OstDirModel::OstDirModel(QObject*)’: /<>/modules/gui/src/python_shell/dir_model.cc:31:18: warning: ‘QDirModel::QDirModel(QObject*)’ is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 31 | QDirModel(parent) | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /<>/modules/gui/src/python_shell/dir_model.hh:26, from /<>/modules/gui/src/python_shell/dir_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c "/<>/modules/gui/src/python_shell/path_completer.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c "/<>/modules/gui/src/python_shell/python_context_parser.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c "/<>/modules/gui/src/python_shell/python_completer.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c "/<>/modules/gui/src/python_shell/python_interpreter.cc" [ 89%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c "/<>/modules/gui/src/python_shell/python_interpreter_worker.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c "/<>/modules/gui/src/python_shell/python_namespace_tree_model.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c "/<>/modules/gui/src/python_shell/python_namespace_tree_item.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_interpreter.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter_worker.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_namespace_tree_item.hh:25, from /<>/modules/gui/src/python_shell/python_namespace_tree_item.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/python_shell/python_namespace_tree_model.cc: In member function ‘virtual Qt::ItemFlags ost::gui::PythonNamespaceTreeModel::flags(const QModelIndex&) const’: /<>/modules/gui/src/python_shell/python_namespace_tree_model.cc:110:12: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::ItemFlag; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 110 | return 0; | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/modules/gui/src/python_shell/output_redirector.hh:30, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:33, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_namespace_tree_model.cc:19: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c "/<>/modules/gui/src/python_shell/python_shell.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c "/<>/modules/gui/src/python_shell/python_shell_widget.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c "/<>/modules/gui/src/python_shell/python_shell_text_document_layout.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c "/<>/modules/gui/src/python_shell/python_tokenizer.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c "/<>/modules/gui/src/python_shell/python_syntax_highlighter.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c "/<>/modules/gui/src/python_shell/shell_history.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:28, from /<>/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:28, from /<>/modules/gui/src/python_shell/python_shell.cc:24: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c "/<>/modules/gui/src/python_shell/string_literal_positions.cc" /<>/modules/gui/src/python_shell/python_shell_widget.cc: In constructor ‘ost::gui::PythonShellWidget::PythonShellWidget(QWidget*)’: /<>/modules/gui/src/python_shell/python_shell_widget.cc:79:34: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:34, from /<>/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /<>/modules/gui/src/python_shell/python_shell_widget.cc:79:18: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 79 | setTabStopWidth(2*metrics.width(" ")); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:34, from /<>/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ /<>/modules/gui/src/python_shell/python_shell_widget.cc: In member function ‘void ost::gui::PythonShellWidget::SetTabWidth(int)’: /<>/modules/gui/src/python_shell/python_shell_widget.cc:537:43: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:34, from /<>/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /<>/modules/gui/src/python_shell/python_shell_widget.cc:537:18: warning: ‘void QPlainTextEdit::setTabStopWidth(int)’ is deprecated [-Wdeprecated-declarations] 537 | setTabStopWidth(tab_width_*metrics.width(" ")); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QPlainTextEdit:1, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:34, from /<>/modules/gui/src/python_shell/python_shell_widget.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qplaintextedit.h:179:24: note: declared here 179 | QT_DEPRECATED void setTabStopWidth(int width); | ^~~~~~~~~~~~~~~ [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c "/<>/modules/gui/src/python_shell/text_logger.cc" [ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c "/<>/modules/gui/src/python_shell/state_machine.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c "/<>/modules/gui/src/python_shell/state.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c "/<>/modules/gui/src/python_shell/transition.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c "/<>/modules/gui/src/python_shell/transition_guard.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/text_logger.hh:26, from /<>/modules/gui/src/python_shell/text_logger.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/transition.hh:23, from /<>/modules/gui/src/python_shell/state.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c "/<>/modules/gui/src/scene_win/context_menu.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/python_shell_widget.hh:28, from /<>/modules/gui/src/python_shell/transition.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c "/<>/modules/gui/src/scene_win/current_selection_node.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/src/python_shell/python_interpreter_worker.hh:29, from /<>/modules/gui/src/python_shell/python_interpreter.hh:31, from /<>/modules/gui/src/python_shell/transition_guard.hh:24, from /<>/modules/gui/src/python_shell/transition_guard.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c "/<>/modules/gui/src/scene_win/custom_part_node.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c "/<>/modules/gui/src/scene_win/scene_node.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_win/current_selection_node.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c "/<>/modules/gui/src/scene_win/label_node.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c "/<>/modules/gui/src/scene_win/entity_node.cc" [ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c "/<>/modules/gui/src/scene_win/entity_part_node.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c "/<>/modules/gui/src/scene_win/gfx_scene_node.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c "/<>/modules/gui/src/scene_win/render_mode_node.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_win/entity_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c "/<>/modules/gui/src/scene_win/render_modes_node.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c "/<>/modules/gui/src/scene_win/root_node.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c "/<>/modules/gui/src/scene_win/scene_win.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c "/<>/modules/gui/src/scene_win/scene_win_model.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_win/render_modes_node.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/map_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c "/<>/modules/gui/src/tools/map_tool.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/scene_win/scene_win.cc:23: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/modules/gui/src/scene_win/scene_win_model.cc: In member function ‘virtual QMimeData* ost::gui::SceneWinModel::mimeData(const QModelIndexList&) const’: /<>/modules/gui/src/scene_win/scene_win_model.cc:231:26: warning: ‘QByteArray& QByteArray::append(const QString&)’ is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 231 | encoded_data.append(text); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QObject:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:24, from /<>/modules/gui/src/scene_win/scene_win_model.hh:34, from /<>/modules/gui/src/scene_win/scene_win_model.cc:23: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1507:20: note: declared here 1507 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /<>/modules/gui/src/scene_win/scene_win.cc: In member function ‘void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)’: /<>/modules/gui/src/scene_win/scene_win.cc:117:31: warning: ‘QModelIndex QModelIndex::child(int, int) const’ is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 117 | model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows); | ~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QModelIndex:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34, from /<>/modules/gui/src/scene_win/scene_win.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c "/<>/modules/gui/src/data_viewer/argand.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c "/<>/modules/gui/src/data_viewer/data_viewer.cc" [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c "/<>/modules/gui/src/data_viewer/data_viewer_panel.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/map_slab.hh:26, from /<>/modules/gui/src/tools/map_tool.cc:21: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/src/tools/map_tool.hh:26, from /<>/modules/gui/src/tools/map_tool.cc:28: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/tools/map_tool.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ [ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c "/<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c "/<>/modules/gui/src/data_viewer/draw_overlay.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c "/<>/modules/gui/src/data_viewer/drawing_functions.cc" In file included from /<>/modules/gui/src/data_viewer/data_viewer.cc:37: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/dock_widget.hh:38:77: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 38 | DockWidget(const QString& title, QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /<>/modules/gui/src/data_viewer/data_viewer.hh:37, from /<>/modules/gui/src/data_viewer/data_viewer.cc:41: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /<>/modules/gui/src/data_viewer/data_viewer.cc: In constructor ‘ost::img::gui::DataViewer::DataViewer(QWidget*, const ost::img::ImageHandle&, const QString&)’: /<>/modules/gui/src/data_viewer/data_viewer.cc:75:14: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 75 | lastmouse_() | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/src/data_viewer/data_viewer.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /<>/modules/gui/src/data_viewer/data_viewer.cc: In member function ‘void ost::img::gui::DataViewer::build(const ost::img::ImageHandle&)’: /<>/modules/gui/src/data_viewer/data_viewer.cc:315:54: warning: ‘const QRect QDesktopWidget::availableGeometry(int) const’ is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 315 | resize(QApplication::desktop()->availableGeometry().adjusted(20,20,-20,-20).size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, from /<>/modules/gui/src/data_viewer/data_viewer.cc:53: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::paintEvent(QPaintEvent*)’: /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:440:56: warning: ‘static bool QPixmapCache::find(const QString&, QPixmap&)’ is deprecated: Use bool find(const QString &, QPixmap *) instead [-Wdeprecated-declarations] 440 | if (update_raster_image_ || ( !QPixmapCache::find(cache_key, pm))) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPixmapCache:1, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:40: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmapcache.h:81:17: note: declared here 81 | static bool find(const QString &key, QPixmap &pixmap); | ^~~~ /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::mouseMoveEvent(QMouseEvent*)’: /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:602:38: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 602 | } else if((event->buttons() == Qt::MidButton) && HasSelection()) { | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobjectdefs.h:48, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qwindowdefs.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘virtual void ost::img::gui::DataViewerPanelBase::wheelEvent(QWheelEvent*)’: /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:613:18: warning: ‘int QWheelEvent::delta() const’ is deprecated: Use angleDelta() [-Wdeprecated-declarations] 613 | if(event->delta()>0) { | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QResizeEvent:1, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc: In member function ‘void ost::img::gui::DataViewerPanelBase::draw_pixel_values(QPainter&)’: /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1074:49: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1074 | int string_w=painter.fontMetrics().width(value_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:1090:49: warning: ‘int QFontMetrics::width(const QString&, int) const’ is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1090 | int string_w=painter.fontMetrics().width(value_string); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh:46, from /<>/modules/gui/src/data_viewer/data_viewer_panel_base.cc:34: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c "/<>/modules/gui/src/data_viewer/fft_panel.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c "/<>/modules/gui/src/data_viewer/info_panel.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c "/<>/modules/gui/src/data_viewer/img2qt.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c "/<>/modules/gui/src/data_viewer/mask_overlay.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c "/<>/modules/gui/src/data_viewer/null_overlay.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c "/<>/modules/gui/src/data_viewer/overlay_base.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c "/<>/modules/gui/src/data_viewer/overlay_manager.cc" [ 94%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.3.0 ../../../stage/lib/libost_gui.so.2.3 ../../../stage/lib/libost_gui.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 96%] Built target ost_gui make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/depend make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake" --color= [ 96%] Generating moc_gosty.cpp [ 96%] Generating qrc_dngr.cpp cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/rcc --name dngr --output "/<>/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp" "/<>/modules/gui/src/dngr.qrc" cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/lib/qt5/bin/moc "@/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -MF CMakeFiles/_ost_gui.dir/wrap_gui.cc.o.d -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c "/<>/modules/gui/pymod/wrap_gui.cc" [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_message_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c "/<>/modules/gui/pymod/export_message_widget.cc" cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/src" "/<>/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -MF CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o.d -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c "/<>/modules/gui/pymod/export_alignment_view.cc" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/gosty.dir/build.make modules/gui/src/CMakeFiles/gosty.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o -MF CMakeFiles/gosty.dir/gosty.cc.o.d -o CMakeFiles/gosty.dir/gosty.cc.o -c "/<>/modules/gui/src/gosty.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_message_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/wrap_gui.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:29, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/modules/gui/src/gosty.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_alignment_view.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/moc_gosty.cpp" [ 96%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c "/<>/obj-x86_64-linux-gnu/modules/gui/src/qrc_dngr.cpp" [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c "/<>/modules/gui/pymod/export_gl_win.cc" [ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o -MF CMakeFiles/_ost_gui.dir/export_tool.cc.o.d -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c "/<>/modules/gui/pymod/export_tool.cc" [ 97%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_gui.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_gfx.so.2.3.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -MF CMakeFiles/_ost_gui.dir/export_py_shell.cc.o.d -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c "/<>/modules/gui/pymod/export_py_shell.cc" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target gosty [ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o -MF CMakeFiles/_ost_gui.dir/export_gosty.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c "/<>/modules/gui/pymod/export_gosty.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_gl_win.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_tool.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_py_shell.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/pymod/export_tool.cc:25: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/modules/gui/pymod/export_tool.cc:25: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_gosty.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c "/<>/modules/gui/pymod/export_scene_win.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c "/<>/modules/gui/pymod/export_sequence_viewer.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh:27, from /<>/modules/gui/pymod/export_gosty.cc:30: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qbytearray.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:50, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/pymod/export_gosty.cc:24: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/pymod/data_viewer_proxy.hh:41, from /<>/modules/gui/pymod/export_gosty.cc:38: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qchar.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh:33, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh:31, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh:26, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main.hh:23, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28, from /<>/modules/gui/pymod/export_gosty.cc:24: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_scene_win.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_sequence_viewer.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o -MF CMakeFiles/_ost_gui.dir/export_perspective.cc.o.d -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c "/<>/modules/gui/pymod/export_perspective.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -MF CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c "/<>/modules/gui/pymod/export_sip_handler.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c "/<>/modules/gui/pymod/export_scene_selection.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_perspective.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_sip_handler.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o -MF CMakeFiles/_ost_gui.dir/export_main_area.cc.o.d -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c "/<>/modules/gui/pymod/export_main_area.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_scene_selection.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o -MF CMakeFiles/_ost_gui.dir/export_panels.cc.o.d -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c "/<>/modules/gui/pymod/export_panels.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -MF CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o.d -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c "/<>/modules/gui/pymod/export_menu_bar.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_main_area.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_menu_bar.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_panels.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_loader.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c "/<>/modules/gui/pymod/export_file_loader.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c "/<>/modules/gui/pymod/export_file_viewer.cc" [ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c "/<>/modules/gui/pymod/export_widget.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_file_loader.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c "/<>/modules/gui/pymod/export_gl_canvas.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_widget.cc:20: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_file_viewer.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c "/<>/modules/gui/pymod/data_viewer_proxy.cc" In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_gl_canvas.cc:19: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c "/<>/modules/gui/pymod/export_data_viewer.cc" [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c "/<>/modules/gui/pymod/export_overlay.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /<>/modules/gui/pymod/export_gl_canvas.cc:21: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:37:22: warning: ‘Qt::MidButton’ is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 37 | MiddleButton=Qt::MidButton | ^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qpoint.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QPoint:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh:24, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh:30, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/gl_canvas.hh:23, from /<>/modules/gui/pymod/export_gl_canvas.cc:21: /usr/include/x86_64-linux-gnu/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/sip_handler.hh:22, from /<>/modules/gui/pymod/data_viewer_proxy.hh:30, from /<>/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -I/usr/include/python3.10 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c "/<>/modules/gui/pymod/export_overlay_manager.cc" In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/pymod/data_viewer_proxy.hh:41, from /<>/modules/gui/pymod/data_viewer_proxy.cc:26: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QWidget:1, from /<>/modules/gui/pymod/sip_handler.hh:24, from /<>/modules/gui/pymod/data_viewer_proxy.hh:30, from /<>/modules/gui/pymod/data_viewer_proxy.cc:26: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_overlay.cc:26: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_data_viewer.cc:25: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/pymod/export_data_viewer.cc:27: /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:46:55: warning: ‘constexpr QFlags::QFlags(QFlags::Zero) [with Enum = Qt::WindowType; QFlags::Zero = int QFlags::Private::*]’ is deprecated: Use default constructor instead [-Wdeprecated-declarations] 46 | MainWindow(QWidget* parent=0, Qt::WindowFlags flags=0); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1304, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtguiglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qmainwindow.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QMainWindow:1, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/main_window.hh:35, from /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh:37, from /<>/modules/gui/pymod/export_data_viewer.cc:27: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/modules/gui/pymod/export_overlay_manager.cc:16: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX shared module ../../../stage/lib/python3.10/dist-packages/ost/gui/_ost_gui.so cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/presets.xml /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/presets.xml cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/icons/color_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/icons/preset_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/icons/render_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/pymod/scene/icons/tool_icon.png /<>/obj-x86_64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -o ../../../stage/lib/python3.10/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib:" ../../../stage/lib/libost_gui.so.2.3.0 /usr/lib/x86_64-linux-gnu/libpython3.10.so /usr/lib/x86_64-linux-gnu/libboost_python310.so ../../../stage/lib/libost_gfx.so.2.3.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/color_options_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/color_select_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/combo_options_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/cpk_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/custom_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/gradient_info_handler.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/gradient_list_model.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/hsc_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/init_inspector.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/inspector_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/map_level_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/remote.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset_editor_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset_info_handler.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset_list_model.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/preset_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/render_mode_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/render_op.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/render_options_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/scene_observer_impl.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/scene_selection_helper.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/simple_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/sline_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/trace_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/tube_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/uniform_color_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/visibility_op.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/line_trace_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/wireframe_widget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/scene/query_editor.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/dng/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/dng/termuse.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/dng/superpositiondialog.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/dng/init.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/dng/menu.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/__init__.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/init_context_menu.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/init_menubar.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/init_spacenav.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/init_splash.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/trajectory_viewer.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/helpwidget.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/table.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)" cd "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" && /usr/bin/python3.10 -c "import py_compile;py_compile.compile(\"/<>/modules/gui/pymod/gosty_startup.py\",\"/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target _ost_gui make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost_config /<>/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost /<>/obj-x86_64-linux-gnu/stage/bin/ost cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different dng /<>/obj-x86_64-linux-gnu/stage/bin/dng cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost_startup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/ost_startup.py cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different /<>/scripts/dng_startup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/dng_startup.py make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target ost_scripts make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/<>/obj-x86_64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 check ARGS\+=--verbose ARGS\+=-j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/<>" -B"/<>/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/<>" -B"/<>/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/obj-x86_64-linux-gnu/CMakeFiles" 91 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake" --color= make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake" --color= make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/lib make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/bin make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target subst_ost make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec [ 0%] Built target subst_ost_startup.py [ 0%] Built target subst_ost_config make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E make_directory /<>/obj-x86_64-linux-gnu/tests make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -DINPUT_FILE=/<>/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Debug -DPython_EXECUTABLE=/usr/bin/python3.10 -DPython_VERSION=3.10.2 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.10/dist-packages/ -P /<>/cmake_support/substitute.cmake make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 0%] Built target create_stage [ 0%] Built target subst_dng make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/src" "/<>/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake" --color= make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/config" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/config" "/<>/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/export_helper/vector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./alignment_opts.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/generic_property_def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/pair_to_tuple_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./clip_alignment.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./exc.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/export_helper/vec_to_list_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./conservation.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./base.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_prediction_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./config.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./geom.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/test_utils/compare_files.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./dllexport.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./contact_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./generic_property.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh cd "/<>/obj-x86_64-linux-gnu/modules/config" && /usr/bin/cmake -E copy_if_different /<>/modules/config/./version.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./version.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./distance_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./integrity_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./entropy.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./mat4.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh [ 0%] Built target ost_config_headers cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./global_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/src" "/<>/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./invalid_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./ins_del.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./local_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./merge_pairwise_alignments.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./ptr_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./log.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec4.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./log_sink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./pair_subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./semiglobal_align.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./dyn_cast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat2_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_item.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./stdint_msc.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_identity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat3_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vecmat4_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./range.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./range.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./sequence_similarity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./circular_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./constants.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./units.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./units.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_path.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./message.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./message.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./platform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_set.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./variance_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./string_ref.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite2_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./pod_vector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./composite3_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./fixed_string.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./aligned_cuboid.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./tri_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./vec_mat_predicates.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./info_verbose_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./boost_filesystem_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./quat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh cd "/<>/obj-x86_64-linux-gnu/modules/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/base/src/./paged_array.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./hmm_pseudo_counts.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/alg/src/./hmm_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./point_cloud.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./geom_info_conversion.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh [ 0%] Built target ost_base_headers make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/geom/src" && /usr/bin/cmake -E copy_if_different /<>/modules/geom/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/info/src" && /usr/bin/cmake -E copy_if_different /<>/modules/info/src/./item_type_cast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build [ 0%] Built target ost_seq_alg_headers [ 0%] Built target ost_geom_headers make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/pointer_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/src" "/<>/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build [ 0%] Built target ost_info_headers make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/src" "/<>/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./conop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./processor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_wrap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./amino_acids.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/atom_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./sqlite_conv.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./diag.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./model_check.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/chain_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/impl/sequence_list_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./linear_indexer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./heuristic.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./binary_container.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/connector_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/db/src" && /usr/bin/cmake -E copy_if_different /<>/modules/db/src/./extract_data_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/dihedral.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./alignment_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh [ 0%] Built target ost_db_headers make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/entity_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./rule_based.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/src" "/<>/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./sequence_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./minimal_compound_lib.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_region.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/fragment_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_gen_s.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./compound_lib_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_iso_spec.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh cd "/<>/obj-x86_64-linux-gnu/modules/conop/src" && /usr/bin/cmake -E copy_if_different /<>/modules/conop/src/./ring_finder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/map_octree.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/octree_isocont.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_ast_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh [ 0%] Built target ost_conop_headers cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./aligned_column_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/src" "/<>/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cartoon_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./invalid_sequence.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/raster_image/raster_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./views_from_sequences.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/query_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/custom_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/dispatch.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/seq/base/src/./profile_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/cpk_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/residue_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/debug_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh [ 0%] Built target ost_seq_headers make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/simple_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/surface_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./anisotropic.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/sline_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_def.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./auto_correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clear.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/impl/torsion_impl_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/line_trace_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_frequency_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./clip_min_max.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/backbone_trace.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./conjugate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_detail.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./atom_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./convolute.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_spatial_domain.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/trace_renderer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bond_table.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./cross_correlate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/image_state_visitor_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./density_slice.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/connect_renderer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/index.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./dft.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/mapped_property.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fft.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fftw_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/entity_renderer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fill.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chain_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/image_state/value_holder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/tabulated_trig.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./filter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/impl/fast_spheres.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_class.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./circle_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fourier_filters.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./chem_type.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./composite_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_gradient_magnitude.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_algorithm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/custom_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./in_mem_coord_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cpk_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./gaussian_laplacian.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/simple_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data_types.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/sline_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./highest_peak_search_3d.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./histogram.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./coord_frame.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./data.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/line_trace_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/cartoon_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./debug.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/render_options/trace_render_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./local_sigma_threshold.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./editor_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./dllexport.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./mol.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./mask_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_iterator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_element_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/by_chain_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./negate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/uniform_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./extent.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer_factory.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/entity_view_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./normalizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/basic_gradient_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_observer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_linear.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/gradient_level_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/color_ops/map_handle_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_log.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_property_mapper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./norm_od.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_pass.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./entity_visitor_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./power_spectrum.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./bitmap_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./inverted_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./collada_exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./randomize.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./handle_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./smooth_mask_image.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./ics_editor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_accumulator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./not_connected_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./entity_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./property_id.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./stat_min_max.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./threshold.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./normalizer_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_error.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./null_data.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transcendentals.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./observable.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_node_visitor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./paste_impl.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transform_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./peak.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./residue_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./phase.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_object_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_mirror.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./physical_units.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./sec_structure.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_prim.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./alg_shift.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./pixel_sampling.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./spatial_organizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./symmetry_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./discrete_shrink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gfx_test_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./point.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformation_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glwin_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./polygon_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./transformations.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_builder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./input.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./progress.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./fractional_shift.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./prim_list.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./builder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./size.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./polar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./surface_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./selection.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./spherical_mask.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./line_average.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./torsion_handle.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/alg/src/./rscrosscorr.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.cc /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./texture.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh [ 0%] Built target ost_img_alg_headers make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/src" "/<>/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transfer_connectivity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./query_view_wrapper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./vertex_array_helper.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./value_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option_group.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./scene_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./vecmat.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh cd "/<>/obj-x86_64-linux-gnu/modules/img/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/img/base/src/./mask_info_convert.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gl_include.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_type_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./glext_include.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/selection_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./view_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh [ 0%] Built target ost_img_headers cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/measure_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./render_mode.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/src" "/<>/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./xcs_editor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_option.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./bounding_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/chemdict_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./material.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./transform.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/star_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/base/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gradient_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/mmcif_info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/manipulator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh [ 0%] Built target ost_mol_headers make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/io_profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./primitives.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/tool_options_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/dcd_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./svd_superpose.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/mouse_event.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_crd_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/tools/map_tool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./povray.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pqr_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_structure_segments.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/align_properties_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mae_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_mmcif_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./local_dist_diff_test.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./exporter_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_test_common.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/background_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./gost_exporter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./distance_rmsd_test.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/conservation_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_pdb_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./superpose_frames.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./color_ops/map_handle_color_op.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/secstr_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./filter_clashes.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./construct_cbeta.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/entity_io_sdf_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./clash_score.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_selection_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./trajectory_analysis.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/sdf_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/seq_text_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./structure_analysis.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_slab.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/save_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/gfx/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gfx/src/./map_iso_prop.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_delegate.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./pdbize.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./adjacency_bitmap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh [ 0%] Built target ost_gfx_headers make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/src" "/<>/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_search_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/load_surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./consistency_checks.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/bindings/src" && /usr/bin/cmake -E copy_if_different /<>/modules/bindings/src/./wrap_tmalign.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_table_view.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/surface_io_msms_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./contact_overlap.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/pdb_str.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh [ 0%] Built target ost_bindings_headers make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/tick_painter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./domain_find.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/stereochemical_params_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./forcefield.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/title_row.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./ff_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./similarity_matrix.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/mol/omf.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/alignment_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./buildingblock.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/base_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/load_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./accessibility.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/sequence_viewer/sequence_view_object.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_df3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./gromacs_block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/main_thread_runner.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./sec_struct.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/image_format.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/output_redirector.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./nonstandard.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dx_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./heuristic_block_modifiers.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./interaction.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./molck.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_spi_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/completer_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/dir_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./find_membrane.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./settings.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/alg/src/./entity_to_density.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/gutter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_situs_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/path_completer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./simulation.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_mrc_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh [ 0%] Built target ost_mol_alg_headers cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_context_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/config" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/config" "/<>/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./modeller.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dat_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_completer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_ipl_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_jpk_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_nanoscope_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh [ 0%] Built target ost_config cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./state_extractor.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_png_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/src" "/<>/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./system_creator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./topology_creator.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_tokenizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_dm3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./index.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_syntax_highlighter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/map_io_tiff_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./topology.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/tiff_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/text_logger.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" && /usr/bin/cmake -E copy_if_different /<>/modules/mol/mm/src/./steep.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/img/jpk_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/sequence_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_interpreter_worker.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh Consolidate compiler generated dependencies of target ost_geom [ 0%] Built target ost_mol_mm_headers make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/fasta_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/python_shell_text_document_layout.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pir_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/shell_history.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/promod_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state_machine.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh [ 2%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/src" "/<>/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/profile_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod" "/<>/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/state.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/hhm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh Consolidate compiler generated dependencies of target ost_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/python_shell/transition_guard.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/pssm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/clustal_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh [ 3%] Built target ost_base make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/tests" "/<>/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/drop_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/load.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/seq/save.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_sink.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./binary_data_source.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh [ 3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c "/<>/modules/geom/tests/test_composite3.cc" cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/bottom_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./container_serialization.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./swap_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/button_box.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_utils.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/event_button.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./io_exception.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh Consolidate compiler generated dependencies of target _ost_geom make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_widget_container.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./convert.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./converting_streams.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/panel_bar_widget_holder.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./formatted_line.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/side_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/chemdict_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh [ 5%] Built target _ost_geom cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/star_parser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/splitter_panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/panels/tabbed_panel_bar.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh [ 5%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/mmcif_info.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c "/<>/modules/geom/tests/test_composite2.cc" cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/io_profile.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/context_menu.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/dcd_io.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_crd_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/current_selection_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pqr_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/custom_part_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mae_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_mmcif_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/entity_part_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/gfx_scene_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_pdb_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/label_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/entity_io_sdf_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/root_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_mode_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/sdf_writer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/save_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_entity.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/render_modes_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_node.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/load_surface.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/surface_io_msms_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/scene_win/scene_win_model.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/pdb_str.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/stereochemical_params_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/message_box_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./mol/omf.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/sequence_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/messages/log_reader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/fasta_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/argand.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pir_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/promod_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/profile_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/hhm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/data_viewer_panel_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/pssm_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/draw_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/clustal_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/drawing_functions.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/load.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/fft_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./seq/save.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/info_panel.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/img2qt.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/load_map.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/mask_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_df3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/null_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/image_format.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dx_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_spi_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_situs_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_base_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_mrc_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_gui.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dat_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/overlay_manager_observer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_ipl_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_jpk_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/pointlist_overlay_base.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_nanoscope_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/strategies_fw.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/data_viewer/viewer_normalizer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_png_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_dm3_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_browser.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/map_io_tiff_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_type_dialog.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_viewer.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/tiff_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd "/<>/obj-x86_64-linux-gnu/modules/io/src" && /usr/bin/cmake -E copy_if_different /<>/modules/io/src/./img/jpk_util.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_canvas.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh [ 5%] Built target ost_io_headers make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gl_win.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/src" "/<>/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_menu.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./gosty_app.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./admin.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./module_config.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_area.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./perspective.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh Consolidate compiler generated dependencies of target ost_info make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./scene_selection.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./main_window.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh [ 6%] Built target ost_info make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./dock_widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./thin_splitter.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_geom_handler.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_pool.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh Consolidate compiler generated dependencies of target _ost_base make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_registry.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./widget_state_saver.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh [ 6%] Built target _ost_base make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/src" "/<>/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake" --color= cd "/<>/obj-x86_64-linux-gnu/modules/gui/src" && /usr/bin/cmake -E copy_if_different /<>/modules/gui/src/./file_loader.hh /<>/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 6%] Built target ost_gui_headers [ 6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c "/<>/modules/geom/tests/test_mat2.cc" Consolidate compiler generated dependencies of target ost_img make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 9%] Built target ost_img make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src" "/<>/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_mol make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target ost_mol make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/info/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/info/pymod" "/<>/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_info make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 15%] Built target _ost_info make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src" "/<>/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_img_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 19%] Built target ost_img_alg make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_img make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 20%] Built target _ost_img [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c "/<>/modules/geom/tests/test_mat3.cc" [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c "/<>/modules/geom/tests/test_mat4.cc" [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c "/<>/modules/geom/tests/test_op2.cc" [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c "/<>/modules/geom/tests/test_op3.cc" [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c "/<>/modules/geom/tests/test_op4.cc" [ 20%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_quat.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c "/<>/modules/geom/tests/test_quat.cc" [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c "/<>/modules/geom/tests/test_vec2.cc" [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c "/<>/modules/geom/tests/test_vec3.cc" [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o -c "/<>/modules/geom/tests/test_vec4.cc" [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c "/<>/modules/geom/tests/test_transform.cc" [ 21%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/c++ -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o -MF CMakeFiles/ost_geom_tests.dir/tests.cc.o.d -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c "/<>/modules/geom/tests/tests.cc" make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/tests" "/<>/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -MF CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c "/<>/modules/base/tests/test_generic_property.cc" [ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -MF CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o -c "/<>/modules/base/tests/test_string_ref.cc" [ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -MF CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c "/<>/modules/base/tests/test_pod_vector.cc" [ 21%] Linking CXX executable ../../../tests/ost_geom_tests cd "/<>/obj-x86_64-linux-gnu/modules/geom/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o CMakeFiles/ost_geom_tests.dir/test_vec4.cc.o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o CMakeFiles/ost_geom_tests.dir/tests.cc.o -o ../../../tests/ost_geom_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so [ 21%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o -MF CMakeFiles/ost_base_tests.dir/tests.cc.o.d -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c "/<>/modules/base/tests/tests.cc" make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" "/<>/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o -MF CMakeFiles/ost_img_tests.dir/test_data.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c "/<>/modules/img/base/tests/test_data.cc" make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c "/<>/modules/img/alg/tests/test_clear.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target ost_geom_tests [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o -c "/<>/modules/img/alg/tests/test_conj.cc" [ 23%] Linking CXX executable ../../../tests/ost_base_tests cd "/<>/obj-x86_64-linux-gnu/modules/base/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o -MF CMakeFiles/ost_img_tests.dir/test_extent.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c "/<>/modules/img/base/tests/test_extent.cc" [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c "/<>/modules/img/alg/tests/test_convolute.cc" [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o -c "/<>/modules/img/alg/tests/test_discrete_shrink.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 23%] Built target ost_base_tests [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o -c "/<>/modules/img/alg/tests/test_fft.cc" [ 23%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c "/<>/modules/img/base/tests/test_image.cc" [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c "/<>/modules/img/alg/tests/test_fill.cc" [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c "/<>/modules/img/alg/tests/test_filter.cc" [ 23%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB 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-DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c "/<>/modules/img/alg/tests/test_mirror.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o -c "/<>/modules/img/base/tests/test_image_state.cc" make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c "/<>/modules/mol/base/tests/test_atom_groups.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c "/<>/modules/img/alg/tests/test_negate.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c "/<>/modules/img/alg/tests/test_power_spectrum.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o -c "/<>/modules/img/base/tests/test_image_state_visitor.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_index.cc.o -MF CMakeFiles/ost_img_tests.dir/test_index.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_index.cc.o -c "/<>/modules/img/base/tests/test_index.cc" [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_chain.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o -c "/<>/modules/mol/base/tests/test_chain.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c "/<>/modules/img/alg/tests/test_shift.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o -MF CMakeFiles/ost_img_tests.dir/test_point.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c "/<>/modules/img/base/tests/test_point.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c "/<>/modules/img/alg/tests/test_stat.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -MF CMakeFiles/ost_img_tests.dir/test_sampling.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c "/<>/modules/img/base/tests/test_sampling.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o -c "/<>/modules/img/alg/tests/test_transform.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_domains.cc.o -MF CMakeFiles/ost_img_tests.dir/test_domains.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_domains.cc.o -c "/<>/modules/img/base/tests/test_domains.cc" [ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_size.cc.o -MF CMakeFiles/ost_img_tests.dir/test_size.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_size.cc.o -c "/<>/modules/img/base/tests/test_size.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o -c "/<>/modules/img/alg/tests/test_normalizer.cc" [ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_conn.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o -c "/<>/modules/mol/base/tests/test_conn.cc" [ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -c "/<>/modules/img/alg/tests/tests.cc" [ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -MF CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o -c "/<>/modules/img/base/tests/test_value_holder.cc" [ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c "/<>/modules/mol/base/tests/test_coord_group.cc" [ 25%] Linking CXX executable ../../../../tests/ost_img_alg_tests cd "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_builder.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c "/<>/modules/mol/base/tests/test_builder.cc" [ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c "/<>/modules/img/base/tests/tests.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 25%] Built target ost_img_alg_tests [ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_delete.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c "/<>/modules/mol/base/tests/test_delete.cc" [ 25%] Linking CXX executable ../../../../tests/ost_img_tests cd "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src" "/<>/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_seq make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 26%] Built target ost_seq [ 26%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_entity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c "/<>/modules/mol/base/tests/test_entity.cc" [ 27%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_ics.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c "/<>/modules/mol/base/tests/test_ics.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 27%] Built target ost_img_tests make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_mol make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target _ost_mol make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/src" "/<>/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_db make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 29%] Built target ost_db make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_img_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target _ost_img_alg make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/tests" "/<>/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] running checks for module base cd "/<>/modules/base/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_base_tests Running 5 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_base_tests_run [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_query.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c "/<>/modules/mol/base/tests/test_query.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_surface.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c "/<>/modules/mol/base/tests/test_surface.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_residue.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c "/<>/modules/mol/base/tests/test_residue.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c "/<>/modules/mol/base/tests/test_view.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c "/<>/modules/mol/base/tests/test_transfer_connectivity.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c "/<>/modules/mol/base/tests/test_view_op.cc" [ 30%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c "/<>/modules/mol/base/tests/tests.cc" make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/src" "/<>/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_bindings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_bindings make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/tests" "/<>/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] running checks for module geom cd "/<>/modules/geom/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_geom_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_geom_tests_run make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/base/tests" "/<>/obj-x86_64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] running checks for module img cd "/<>/modules/img/base/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_img_tests Running 44 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_img_tests_run make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/img/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] running checks for module img_alg cd "/<>/modules/img/alg/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_img_alg_tests Running 25 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 30%] Built target ost_img_alg_tests_run make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o -c "/<>/modules/seq/base/tests/test_sequence.cc" [ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c "/<>/modules/seq/base/tests/test_aligned_column.cc" [ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c "/<>/modules/seq/base/tests/test_aligned_region.cc" [ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o -c "/<>/modules/seq/base/tests/test_alignment.cc" [ 30%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_profile.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c "/<>/modules/seq/base/tests/test_profile.cc" [ 30%] Linking CXX executable ../../../../tests/ost_mol_tests cd "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 [ 31%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c "/<>/modules/seq/base/tests/tests.cc" [ 31%] Linking CXX executable ../../../../tests/ost_seq_tests cd "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_seq.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target ost_seq_tests make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake" --color= make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/src" "/<>/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_seq make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target ost_seq_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build Consolidate compiler generated dependencies of target ost_conop make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build [ 32%] Built target _ost_seq make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Built target ost_conop make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend [ 35%] Built target ost_seq_alg make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] running checks for module seq cd "/<>/modules/seq/base/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_seq_tests cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/src" "/<>/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/pymod" "/<>/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake" --color= Running 32 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target ost_seq_tests_run make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend Consolidate compiler generated dependencies of target _ost_db make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target _ost_db make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod" "/<>/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_bindings make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 35%] Built target _ost_bindings make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/tests" "/<>/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build Consolidate compiler generated dependencies of target ost_mol_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c "/<>/modules/conop/tests/test_amino_acids.cc" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target ost_mol_alg make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_seq_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 37%] Built target _ost_seq_alg make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod" "/<>/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_gfx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build Consolidate compiler generated dependencies of target _ost_conop make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target _ost_conop make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/src" "/<>/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 38%] Built target ost_mol_tests make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake" --color= [ 45%] Built target ost_gfx make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] running checks for module mol cd "/<>/modules/mol/base/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_mol_tests Running 70 test cases... *** No errors detected Consolidate compiler generated dependencies of target _ost_mol_alg make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Built target ost_mol_tests_run make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o -c "/<>/modules/conop/tests/test_heuristic_conop.cc" [ 46%] Built target _ost_mol_alg [ 46%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o -MF CMakeFiles/ost_conop_tests.dir/tests.cc.o.d -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c "/<>/modules/conop/tests/tests.cc" Consolidate compiler generated dependencies of target ost_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target ost_io make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod" "/<>/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_gfx make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 52%] Built target _ost_gfx make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/src" "/<>/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_gui make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/build [ 52%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c "/<>/modules/conop/tests/test_rule_based_conop.cc" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/src/CMakeFiles/ost_gui.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 85%] Built target ost_gui make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/pymod" "/<>/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_io make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/io/pymod/CMakeFiles/_ost_io.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target _ost_io make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 86%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o -MF CMakeFiles/ost_gfx_tests.dir/tests.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c "/<>/modules/gfx/tests/tests.cc" [ 87%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c "/<>/modules/gfx/tests/test_gfx_node.cc" [ 87%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o -MF CMakeFiles/ost_conop_tests.dir/helper.cc.o.d -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c "/<>/modules/conop/tests/helper.cc" make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -MF CMakeFiles/ost_io_tests.dir/test_clustal.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c "/<>/modules/io/tests/test_clustal.cc" make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c "/<>/modules/mol/alg/tests/test_superposition.cc" [ 89%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_color.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o -c "/<>/modules/gfx/tests/test_color.cc" [ 89%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c "/<>/modules/io/tests/test_io_pdb.cc" [ 89%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c "/<>/modules/gfx/tests/test_map_octree.cc" [ 89%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o -c "/<>/modules/mol/alg/tests/tests.cc" [ 90%] Linking CXX executable ../../../tests/ost_conop_tests cd "/<>/obj-x86_64-linux-gnu/modules/conop/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o 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/usr/lib/x86_64-linux-gnu/libboost_regex.so [ 90%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o -c "/<>/modules/mol/alg/tests/test_consistency_checks.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target ost_conop_tests make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target ost_mol_mm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target ost_mol_mm make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 91%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o.d -o 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../../../stage/lib/libost_gfx.so.2.3.0 ../../../stage/lib/libost_io.so.2.3.0 /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 91%] Building CXX object modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c "/<>/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 91%] Built target ost_gfx_tests make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod" "/<>/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_gui make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target _ost_gui make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/tests" "/<>/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 93%] running checks for module conop cd "/<>/modules/conop/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_conop_tests Running 16 test cases... unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file unable to open database file *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target ost_conop_tests_run [ 93%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c "/<>/modules/seq/alg/tests/test_merge_pairwise_alignments.cc" [ 93%] Linking CXX executable ../../../../tests/ost_mol_alg_tests cd "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libsqlite3.so ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 94%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c "/<>/modules/seq/alg/tests/test_sequence_identity.cc" [ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c "/<>/modules/io/tests/test_io_crd.cc" [ 94%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c "/<>/modules/seq/alg/tests/tests.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target ost_mol_alg_tests make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] running checks for module gfx cd "/<>/modules/gfx/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_gfx_tests Running 13 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target ost_gfx_tests_run [ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c "/<>/modules/io/tests/test_io_dcd.cc" make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] running checks for module mol_alg cd "/<>/modules/mol/alg/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_mol_alg_tests Running 4 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target ost_mol_alg_tests_run make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 94%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -c "/<>/modules/mol/mm/tests/test_interaction.cc" [ 94%] Linking CXX executable ../../../../tests/ost_seq_alg_tests cd "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_io.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so [ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c "/<>/modules/io/tests/test_io_sdf.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 94%] Built target ost_seq_alg_tests make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend [ 94%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c "/<>/modules/io/tests/test_io_sequence_profile.cc" make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake" --color= Consolidate compiler generated dependencies of target _ost_mol_mm make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target _ost_mol_mm make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] running checks for module seq_alg cd "/<>/modules/seq/alg/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_seq_alg_tests Running 19 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 95%] Built target ost_seq_alg_tests_run [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -c "/<>/modules/mol/mm/tests/test_block.cc" [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -c "/<>/modules/mol/mm/tests/test_block_modifiers.cc" [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o -MF CMakeFiles/ost_io_tests.dir/test_pir.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c "/<>/modules/io/tests/test_pir.cc" [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -c "/<>/modules/mol/mm/tests/test_topology.cc" [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -c "/<>/modules/mol/mm/tests/test_forcefield.cc" [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -MF CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c "/<>/modules/io/tests/test_iomanager.cc" [ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -c "/<>/modules/mol/mm/tests/test_simulation.cc" [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o -MF CMakeFiles/ost_io_tests.dir/tests.cc.o.d -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c "/<>/modules/io/tests/tests.cc" [ 95%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -MF CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c "/<>/modules/io/tests/test_star_parser.cc" [ 96%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -c "/<>/modules/mol/mm/tests/tests.cc" [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c "/<>/modules/io/tests/test_mmcif_reader.cc" [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c "/<>/modules/io/tests/test_mmcif_info.cc" [ 97%] Linking CXX executable ../../../../tests/ost_mol_mm_tests cd "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_mm_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../../stage/lib/libost_mol_mm.so.2.3.0 ../../../../stage/lib/libost_io.so.2.3.0 ../../../../stage/lib/libost_mol_alg.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so ../../../../stage/lib/libost_conop.so.2.3.0 ../../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../../stage/lib/libost_seq.so.2.3.0 ../../../../stage/lib/libost_mol.so.2.3.0 ../../../../stage/lib/libost_img_alg.so.2.3.0 ../../../../stage/lib/libost_img.so.2.3.0 ../../../../stage/lib/libost_info.so.2.3.0 ../../../../stage/lib/libost_base.so.2.3.0 ../../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libOpenMM.so make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/scripts" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/scripts" "/<>/obj-x86_64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost_config /<>/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost_config cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost /<>/obj-x86_64-linux-gnu/stage/bin/ost cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different dng /<>/obj-x86_64-linux-gnu/stage/bin/dng cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different ost_startup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/ost_startup.py cd "/<>/obj-x86_64-linux-gnu/scripts" && /usr/bin/cmake -E copy_if_different /<>/scripts/dng_startup.py /<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages//ost/dng_startup.py make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target ost_scripts make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_aaindex.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_aaindex.py" . ---------------------------------------------------------------------- Ran 1 test in 0.166s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_aaindex.py_run make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/tests" "/<>/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build.make modules/base/tests/CMakeFiles/test_stutil.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_stutil.py cd "/<>/modules/base/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/base/tests/test_stutil.py" ...... ---------------------------------------------------------------------- Ran 6 tests in 0.023s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_stutil.py_run make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/tests" "/<>/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make modules/base/tests/CMakeFiles/test_table.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_table.py cd "/<>/modules/base/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/base/tests/test_table.py" ....................................../usr/lib/python3.10/unittest/case.py:549: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ../usr/lib/python3.10/unittest/case.py:549: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ./usr/lib/python3.10/unittest/case.py:549: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'> method() ResourceWarning: Enable tracemalloc to get the object allocation traceback ................./<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ost/table.py:2186: DeprecationWarning: scipy.isnan is deprecated and will be removed in SciPy 2.0.0, use numpy.isnan instead if scipy.isnan(correl): ......................... ---------------------------------------------------------------------- Ran 83 tests in 9.983s OK [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c "/<>/modules/io/tests/test_io_img.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_table.py_run [ 97%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I"/<>/obj-x86_64-linux-gnu/stage/include" -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c "/<>/modules/io/tests/test_exceptions.cc" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target ost_mol_mm_tests make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/base/tests" "/<>/obj-x86_64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_log.py cd "/<>/modules/base/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/base/tests/test_log.py" .... ---------------------------------------------------------------------- Ran 4 tests in 0.001s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_log.py_run make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_msms.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_msms.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_msms.py" Could not find msms executable: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_msms.py_run make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_clustalw.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_clustalw.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_clustalw.py" ....... ---------------------------------------------------------------------- Ran 7 tests in 1.986s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_clustalw.py_run make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_hhblits.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_hhblits.py" No HHblits installation found: skip unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_hhblits.py_run make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_blast.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_blast.py" Could not find blast executable: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_blast.py_run make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 97%] running checks test_kclust.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_kclust.py" Could not find kClust executable: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 97%] Built target test_kclust.py_run make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_naccess.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_naccess.py" Could not find NACCESS, could not test binding... make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_naccess.py_run make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_cadscore.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_cadscore.py" .make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_tmtools.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_tmtools.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.038s OK Could not find tmalign executable: ignoring unit tests Could not find tmalign executable: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_tmtools.py_run make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_ialign.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_ialign.py" . ---------------------------------------------------------------------- Ran 1 test in 0.055s OK Could not find ialign master perl script: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_ialign.py_run make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_lga.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_lga.py" . ---------------------------------------------------------------------- Ran 1 test in 0.024s OK Could not find lga executable: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_lga.py_run make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests" "/<>/obj-x86_64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_hbplus.py cd "/<>/modules/bindings/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/bindings/tests/test_hbplus.py" Could not find hbplus, could not test binding... make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_hbplus.py_run make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/conop/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/conop/tests" "/<>/obj-x86_64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_processor.py cd "/<>/modules/conop/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/conop/tests/test_processor.py" . ---------------------------------------------------------------------- Ran 1 test in 0.001s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_processor.py_run make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/db/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/db/tests" "/<>/obj-x86_64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_linear_db.py cd "/<>/modules/db/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/db/tests/test_linear_db.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.003s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_linear_db.py_run make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/geom/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/geom/tests" "/<>/obj-x86_64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 98%] running checks test_geom.py cd "/<>/modules/geom/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/geom/tests/test_geom.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.006s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 98%] Built target test_geom.py_run make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests" "/<>/obj-x86_64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_gfx.py cd "/<>/modules/gfx/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/gfx/tests/test_gfx.py" ...... ---------------------------------------------------------------------- Ran 6 tests in 0.004s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_gfx.py_run make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_io_pdb.py cd "/<>/modules/io/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/io/tests/test_io_pdb.py" ...s ---------------------------------------------------------------------- Ran 4 tests in 0.011s OK (skipped=1) make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_io_pdb.py_run make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_io_mmcif.py cd "/<>/modules/io/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/io/tests/test_io_mmcif.py" .........s ---------------------------------------------------------------------- Ran 10 tests in 1.780s OK (skipped=1) make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_io_mmcif.py_run make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_io_omf.py cd "/<>/modules/io/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/io/tests/test_io_omf.py" . ---------------------------------------------------------------------- Ran 1 test in 0.518s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_io_omf.py_run make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_pdbize.py cd "/<>/modules/mol/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/alg/tests/test_pdbize.py" make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_convenient_superpose.py cd "/<>/modules/mol/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/alg/tests/test_convenient_superpose.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.007s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_pdbize.py_run make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_hbond.py cd "/<>/modules/mol/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/alg/tests/test_hbond.py" ... ---------------------------------------------------------------------- Ran 2 tests in 0.013s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_hbond.py_run make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_accessibility.py cd "/<>/modules/mol/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/alg/tests/test_accessibility.py" .s....... ---------------------------------------------------------------------- Ran 9 tests in 1.643s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_convenient_superpose.py_run make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_sec_struct.py cd "/<>/modules/mol/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/alg/tests/test_sec_struct.py" s ---------------------------------------------------------------------- Ran 1 test in 0.000s OK (skipped=1) make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_sec_struct.py_run make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks for module mol_mm cd "/<>/modules/mol/mm/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_mol_mm_tests [100%] Linking CXX executable ../../../tests/ost_io_tests cd "/<>/obj-x86_64-linux-gnu/modules/io/tests" && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests -L"/<>/obj-x86_64-linux-gnu/stage/lib" -Wl,-rpath,"/<>/obj-x86_64-linux-gnu/stage/lib" /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so ../../../stage/lib/libost_io.so.2.3.0 ../../../stage/lib/libost_mol_alg.so.2.3.0 ../../../stage/lib/libost_conop.so.2.3.0 ../../../stage/lib/libost_db.so.2.3.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_thread.so /usr/lib/x86_64-linux-gnu/libboost_chrono.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_atomic.so ../../../stage/lib/libost_seq_alg.so.2.3.0 ../../../stage/lib/libost_seq.so.2.3.0 ../../../stage/lib/libost_mol.so.2.3.0 ../../../stage/lib/libost_img_alg.so.2.3.0 ../../../stage/lib/libost_img.so.2.3.0 ../../../stage/lib/libost_info.so.2.3.0 ../../../stage/lib/libost_base.so.2.3.0 ../../../stage/lib/libost_geom.so.2.3.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libz.so . ---------------------------------------------------------------------- Ran 2 tests in 5.997s OK (skipped=1) Could not find NACCESS, could not compare Accessiblity function... make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_accessibility.py_run make -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests" "/<>/obj-x86_64-linux-gnu/modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_antechamber.py cd "/<>/modules/mol/mm/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/mol/mm/tests/test_antechamber.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.064s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_antechamber.py_run make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_seq.py cd "/<>/modules/seq/base/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/base/tests/test_seq.py" .............. ---------------------------------------------------------------------- Ran 14 tests in 0.030s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_seq.py_run make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_renumber.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_renumber.py" ........ ---------------------------------------------------------------------- Ran 8 tests in 0.042s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_renumber.py_run make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_local_align.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_local_align.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.013s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_local_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake" --color= Running 13 test cases... *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Built target ost_mol_mm_tests_run make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake" --color= [100%] running checks test_global_align.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_global_align.py" make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_semiglobal_align.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_semiglobal_align.py" ... ---------------------------------------------------------------------- Ran 3 tests in 0.002s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_global_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_weight_matrix.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_weight_matrix.py" . ---------------------------------------------------------------------- Ran 1 test in 0.009s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_semiglobal_align.py_run make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests" "/<>/obj-x86_64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks test_alignment_from_chain_view.py cd "/<>/modules/seq/alg/tests" && sh -c "PYTHONPATH=/<>/obj-x86_64-linux-gnu/stage/lib/python3.10/dist-packages/ /usr/bin/python3.10 /<>/modules/seq/alg/tests/test_alignment_from_chain_view.py" .. ---------------------------------------------------------------------- Ran 2 tests in 0.000s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_weight_matrix.py_run . ---------------------------------------------------------------------- Ran 1 test in 0.016s OK make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_alignment_from_chain_view.py_run make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/modules/io/tests" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/modules/io/tests" "/<>/obj-x86_64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests_run.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] running checks for module io cd "/<>/modules/io/tests" && env OST_ROOT=/<>/obj-x86_64-linux-gnu/stage /<>/obj-x86_64-linux-gnu/tests/ost_io_tests Running 159 test cases... unable to open database file WARNING: skipping mmcif_convert_seqres unit test. Compound library is required unable to open database file WARNING: skipping mmcif_entity_poly_tests unit test. Compound library is required unable to open database file unable to open database file WARNING: skipping SEQRES import unit test. Compound lib is required *** No errors detected make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target ost_io_tests_run . ---------------------------------------------------------------------- Ran 2 tests in 48.426s OK Could not find CAD score classic executables: ignoring unit tests make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_cadscore.py_run make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' cd "/<>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu" "/<>/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake" --color= make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[4]: Entering directory '/<>/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[4]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target check make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/<>/obj-x86_64-linux-gnu/CMakeFiles" 0 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/openstructure-2.3.0\~rc/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/<>" -B"/<>/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Debug" -- Installing: /<>/debian/tmp/usr/lib/libost_base.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_base.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_base.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_base.so -- Installing: /<>/debian/tmp/usr/include/ost/export_helper/generic_property_def.hh -- Installing: /<>/debian/tmp/usr/include/ost/export_helper/pair_to_tuple_conv.hh -- Installing: /<>/debian/tmp/usr/include/ost/export_helper/vec_to_list_conv.hh -- Installing: /<>/debian/tmp/usr/include/ost/test_utils/compare_files.hh -- Installing: /<>/debian/tmp/usr/include/ost/./generic_property.hh -- Installing: /<>/debian/tmp/usr/include/ost/./integrity_error.hh -- Installing: /<>/debian/tmp/usr/include/ost/./invalid_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/./ptr_observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/./log.hh -- Installing: /<>/debian/tmp/usr/include/ost/./log_sink.hh -- Installing: /<>/debian/tmp/usr/include/ost/./profile.hh -- Installing: /<>/debian/tmp/usr/include/ost/./dyn_cast.hh -- Installing: /<>/debian/tmp/usr/include/ost/./stdint.hh -- Installing: /<>/debian/tmp/usr/include/ost/./stdint_msc.hh -- Installing: /<>/debian/tmp/usr/include/ost/./range.hh -- Installing: /<>/debian/tmp/usr/include/ost/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/./units.hh -- Installing: /<>/debian/tmp/usr/include/ost/./message.hh -- Installing: /<>/debian/tmp/usr/include/ost/./platform.hh -- Installing: /<>/debian/tmp/usr/include/ost/./string_ref.hh -- Installing: /<>/debian/tmp/usr/include/ost/./pod_vector.hh -- Installing: /<>/debian/tmp/usr/include/ost/./fixed_string.hh -- Installing: /<>/debian/tmp/usr/include/ost/./tri_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/./boost_filesystem_helper.hh -- Installing: /<>/debian/tmp/usr/include/ost/./paged_array.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/_ost_base.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/_ost_base.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./settings.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./stutil.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table_selector.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./xmlrunner.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./testutils.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./settings.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./stutil.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./table_selector.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./xmlrunner.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/./testutils.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/__init__.py -- Installing: /<>/debian/tmp/usr/lib/libost_bindings.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_bindings.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_bindings.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_bindings.so -- Installing: /<>/debian/tmp/usr/include/ost/bindings/./wrap_tmalign.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/_ost_bindings.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./lga.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hbplus.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./msms.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./tmtools.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./dssp.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./clustalw.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./utils.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./naccess.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits2.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits3.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./blast.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./cadscore.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./kclust.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./ialign.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./mmseqs2.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./lga.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hbplus.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./msms.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./tmtools.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./dssp.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./clustalw.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./utils.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./naccess.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits2.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./hhblits3.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./blast.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./cadscore.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./kclust.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./ialign.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/bindings/./mmseqs2.pyc -- Installing: /<>/debian/tmp/usr/include/ost/./base.hh -- Installing: /<>/debian/tmp/usr/include/ost/./config.hh -- Installing: /<>/debian/tmp/usr/include/ost/./dllexport.hh -- Installing: /<>/debian/tmp/usr/include/ost/./version.hh -- Installing: /<>/debian/tmp/usr/lib/libost_conop.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_conop.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_conop.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_conop.so -- Installing: /<>/debian/tmp/usr/include/ost/conop/./conop.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./processor.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./amino_acids.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./diag.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./model_check.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./heuristic.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./compound.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./compound_lib.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./rule_based.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./minimal_compound_lib.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./compound_lib_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/conop/./ring_finder.hh -- Installing: /<>/debian/tmp/usr/bin/chemdict_tool -- Set runtime path of "/<>/debian/tmp/usr/bin/chemdict_tool" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/_ost_conop.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/_ost_conop.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./cleanup.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/conop/./cleanup.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_db.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_db.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_db.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_db.so -- Installing: /<>/debian/tmp/usr/include/ost/db/./sqlite_wrap.hh -- Installing: /<>/debian/tmp/usr/include/ost/db/./sqlite_conv.hh -- Installing: /<>/debian/tmp/usr/include/ost/db/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/db/./linear_indexer.hh -- Installing: /<>/debian/tmp/usr/include/ost/db/./binary_container.hh -- Installing: /<>/debian/tmp/usr/include/ost/db/./extract_data_helper.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/_ost_db.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/_ost_db.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/db/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_geom.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_geom.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_geom.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_geom.so -- Installing: /<>/debian/tmp/usr/include/ost/geom/export_helper/vector.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./def.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./exc.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./geom.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./mat.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./mat2.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./mat3.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./mat4.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vec.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vec2.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vec3.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vec4.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vecmat_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vecmat2_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vecmat3_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vecmat4_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./circular_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./constants.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite2.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite3.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite2_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./composite3_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./aligned_cuboid.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./vec_mat_predicates.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./quat.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./transform.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./point_cloud.hh -- Installing: /<>/debian/tmp/usr/include/ost/geom/./module_config.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/_ost_geom.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/_ost_geom.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/geom/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_gfx.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_gfx.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_gfx.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_gfx.so -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Up-to-date: /<>/debian/tmp/usr/include/ost/gfx/impl/map_iso_gen_s.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/map_iso_spec.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/map_octree.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/octree_isocont.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/cartoon_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/custom_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/cpk_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/debug_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/simple_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/sline_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/trace_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/line_trace_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/backbone_trace.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/entity_detail.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/entity_renderer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/trace_renderer_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/connect_renderer_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/mapped_property.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/entity_renderer_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/tabulated_trig.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/impl/fast_spheres.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/line_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/custom_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/cpk_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/simple_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/sline_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/line_trace_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/cartoon_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/render_options/trace_render_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/by_element_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/by_chain_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/uniform_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/gradient_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/entity_view_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/basic_gradient_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/gradient_level_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/color_ops/map_handle_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./render_pass.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./bitmap_io.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./collada_exporter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./color.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./entity.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./entity_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gl_helper.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_node_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_node_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_object_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_object.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_object_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_prim.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./symmetry_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gfx_test_object.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./glwin_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./input.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./prim_list.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./scene.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./selection.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./surface.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./texture.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./vertex_array.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./vertex_array_helper.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./scene_observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gl_include.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./glext_include.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./render_mode.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./material.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gradient.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gradient_manager.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./primitives.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./povray_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./povray.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./exporter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./exporter_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./gost_exporter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./map_handle_color_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./map_iso.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./map_slab.hh -- Installing: /<>/debian/tmp/usr/include/ost/gfx/./map_iso_prop.hh -- Installing: /<>/debian/tmp/usr/share/openstructure/textures/test_texture.png -- Installing: /<>/debian/tmp/usr/share/openstructure/textures/glyph_texture.png -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/_ost_gfx.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./py_gfx_obj.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gfx/./py_gfx_obj.pyc -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/gradients.xml -- Installing: /<>/debian/tmp/usr/lib/libost_gui.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_gui.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_gui.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_gui.so -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_option_group.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_options.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/selection_tool.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/measure_tool.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_option.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_manager.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_options_widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/manipulator.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/tool_options_win.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/mouse_event.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/tools/map_tool.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/align_properties_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/base_row.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/background_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/conservation_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/secstr_row.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_secstr_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_selection_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/seq_text_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_delegate.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_model.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_row.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_search_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_table_view.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_viewer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/tick_painter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/title_row.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/alignment_view_object.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/base_view_object.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/sequence_viewer/sequence_view_object.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/main_thread_runner.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/output_redirector.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/completer_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/dir_model.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/gutter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/path_completer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_context_parser.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_completer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_shell.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_shell_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_shell_widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_tokenizer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_syntax_highlighter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/text_logger.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_interpreter_worker.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/python_shell_text_document_layout.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/shell_history.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/state_machine.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/state.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/transition.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/python_shell/transition_guard.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/button_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/drop_box.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/panel_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/panel_manager.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/bottom_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/button_box.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/event_button.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/panel_widget_container.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/panel_bar_widget_holder.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/side_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/splitter_panel_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/panels/tabbed_panel_bar.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/context_menu.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/current_selection_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/custom_part_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/entity_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/entity_part_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/gfx_scene_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/label_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/root_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/render_mode_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/render_modes_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/scene_node.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/scene_win.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/scene_win/scene_win_model.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/messages/message_widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/messages/message_box_widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/messages/log_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/argand.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/data_viewer_panel_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/draw_overlay.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/drawing_functions.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/fft_panel.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/info_panel.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/img2qt.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/mask_overlay.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/null_overlay.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_base_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_gui.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/overlay_manager_observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/pointlist_overlay_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/strategies.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/strategies_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/data_viewer/viewer_normalizer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./file_browser.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./file_type_dialog.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./file_viewer.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./gl_canvas.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./gl_win.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./scene_menu.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./gosty_app.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./admin.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./main.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./main_area.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./perspective.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./scene_selection.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./main_window.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Up-to-date: /<>/debian/tmp/usr/include/ost/gui/./dock_widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./thin_splitter.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./widget.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./widget_geom_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./widget_pool.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./widget_registry.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./widget_state_saver.hh -- Installing: /<>/debian/tmp/usr/include/ost/gui/./file_loader.hh -- Installing: /<>/debian/tmp/usr/lib/openstructure/libexec/gosty -- Set runtime path of "/<>/debian/tmp/usr/lib/openstructure/libexec/gosty" to "$ORIGIN/../../lib" -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/add_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/close_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/critical_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/delete_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/distance_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/find_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/information_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/map_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/menubar_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/rigid_body_manipulator_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/selection_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/show_sidebar_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/site_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/split_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/warning_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/icons/refresh.png -- Installing: /<>/debian/tmp/usr/share/openstructure/gui/images/logo-small.png -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/_ost_gui.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/_ost_gui.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_options_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_select_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/combo_options_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/cpk_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/custom_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_editor_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_info_handler.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_list_model.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_preset_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/hsc_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_gradient_info_handler.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_preset_info_handler.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/init_inspector.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/inspector_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/map_level_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/remote.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_list_model.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_info_handler.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_list_model.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_mode_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_op.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_options_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_observer_impl.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_selection_helper.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/simple_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/sline_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/toolbar_options_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/trace_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/tube_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/uniform_color_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/visibility_op.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/line_trace_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/wireframe_widget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/query_editor.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_options_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/color_select_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/combo_options_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/cpk_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/custom_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_editor_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_info_handler.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_list_model.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/gradient_preset_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/hsc_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_gradient_info_handler.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/immutable_preset_info_handler.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/init_inspector.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/inspector_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/map_level_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/remote.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_list_model.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_editor_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_info_handler.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_list_model.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/preset_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_mode_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_op.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/render_options_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_observer_impl.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/scene_selection_helper.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/simple_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/sline_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/toolbar_options_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/trace_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/tube_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/uniform_color_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/visibility_op.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/line_trace_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/wireframe_widget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/scene/query_editor.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/termuse.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/superpositiondialog.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/init.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/menu.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/termuse.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/superpositiondialog.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/init.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/dng/menu.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_context_menu.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_menubar.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_spacenav.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_splash.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./trajectory_viewer.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./helpwidget.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./table.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./gosty_startup.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_context_menu.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_menubar.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_spacenav.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./init_splash.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./trajectory_viewer.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./helpwidget.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./table.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/gui/./gosty_startup.pyc -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/presets.xml -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/icons/color_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/icons/preset_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/icons/render_icon.png -- Installing: /<>/debian/tmp/usr/share/openstructure/scene/icons/tool_icon.png -- Installing: /<>/debian/tmp/usr/lib/libost_img.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_img.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_img.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_img.so -- Installing: /<>/debian/tmp/usr/include/ost/img/raster_image/raster_image.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/dispatch.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_base_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_def.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_factory.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_frequency_domain.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_half_frequency_domain.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_spatial_domain.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_algorithm.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/image_state_visitor_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/index.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/type_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/image_state/value_holder.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./algorithm.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./circle_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./composite_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./data_algorithm.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./data_observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./data_types.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./data.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./debug.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./dllexport.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./extent_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./extent_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./extent.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_factory.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_handle_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_list.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_state_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image_state.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./image.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./inverted_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./map.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask_base_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./normalizer_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./normalizer_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./null_data.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./observable.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./paste_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./peak.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./phase.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./physical_units.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./pixel_sampling.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./point_list.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./point.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./polygon_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./progress.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./size.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./spherical_mask.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./util.cc -- Installing: /<>/debian/tmp/usr/include/ost/img/./util.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./value_util.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./vecmat.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/./mask_info_convert.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/_ost_img.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/_ost_img.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_img_alg.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_img_alg.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_img_alg.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_img_alg.so -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./anisotropic.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./auto_correlate.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./clear.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./clip_min_max.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./conjugate.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./convolute.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./correlate.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./cross_correlate.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./density_slice.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./dft.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./fft.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./fftw_helper.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./fill.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./filter.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./fourier_filters.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./gaussian_gradient_magnitude.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./gaussian.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./gaussian_laplacian.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./highest_peak_search_3d.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./histogram.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./line_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./local_sigma_threshold.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./mask_image.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./negate.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./normalizer_factory.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./norm.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./normalizer.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./norm_linear.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./norm_log.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./norm_od.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./power_spectrum.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./randomize.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./smooth_mask_image.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./stat.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./stat_accumulator.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./stat_min_max.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./threshold.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./transcendentals.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./transform.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./transform_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./alg_transform.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./alg_mirror.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./alg_shift.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./discrete_shrink.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./transformation_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./transformations.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./fractional_shift.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./polar.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./line_average.hh -- Installing: /<>/debian/tmp/usr/include/ost/img/alg/./rscrosscorr.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/_ost_img_alg.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/img/alg/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_info.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_info.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_info.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_info.so -- Installing: /<>/debian/tmp/usr/include/ost/info/./info.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_error.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_group.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_item.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_path.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_set.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./info_verbose_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./item_type.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./geom_info_conversion.hh -- Installing: /<>/debian/tmp/usr/include/ost/info/./item_type_cast.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/_ost_info.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/_ost_info.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/info/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_io.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_io.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_io.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_io.so -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/chemdict_parser.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/star_parser.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/mmcif_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/mmcif_info.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/io_profile.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/dcd_io.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_crd_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_pqr_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_mae_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_mmcif_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/pdb_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_pdb_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/pdb_writer.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/entity_io_sdf_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/sdf_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/sdf_writer.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/save_entity.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/load_entity.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/surface_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/load_surface.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/surface_io_msms_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/pdb_str.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/stereochemical_params_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/mol/omf.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/load_map.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_df3_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/image_format.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_dx_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_spi_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_situs_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_mrc_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_dat_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_ipl_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_jpk_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_nanoscope_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_png_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_dm3_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/map_io_tiff_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/tiff_util.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/img/jpk_util.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/sequence_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/fasta_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/pir_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/promod_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/profile_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/hhm_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/pssm_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/clustal_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/load.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/seq/save.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./binary_data_sink.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./io_manager.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./binary_data_source.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./container_serialization.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./swap_util.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./io_utils.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./io_exception.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./convert.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./converting_streams.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./formatted_line.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./chemdict_parser.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./star_parser.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./mmcif_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./mmcif_info.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./io_profile.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./dcd_io.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_crd_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_pqr_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_mae_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_mmcif_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./pdb_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_pdb_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./pdb_writer.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./entity_io_sdf_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./sdf_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./sdf_writer.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./save_entity.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./load_entity.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./surface_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./load_surface.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./surface_io_msms_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./pdb_str.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./stereochemical_params_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./omf.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./sequence_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./fasta_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./pir_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./promod_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./profile_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./hhm_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./pssm_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./clustal_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./load.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./save.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./load_map.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_df3_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./image_format.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_dx_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_spi_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_situs_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_mrc_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_dat_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_ipl_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_jpk_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_nanoscope_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_png_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_dm3_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./map_io_tiff_handler.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./tiff_util.hh -- Installing: /<>/debian/tmp/usr/include/ost/io/./jpk_util.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/_ost_io.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/_ost_io.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./remote.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./repository.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./remote.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/io/./repository.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_mol.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_mol.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_mol.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_mol.so -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/pointer_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/atom_group.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/atom_prop.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/atom_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/atom_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/chain_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/chain_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/connector_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/connector_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/dihedral.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/entity_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/entity_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/fragment_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/fragment_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/query_ast.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/query_ast_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/query_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/query_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/residue_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/residue_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/surface_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/surface_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/torsion_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/impl/torsion_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./atom_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./atom_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./atom_view.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./bond_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./bond_table.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chain_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chain_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chain_view.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chain_type.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chem_class.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./chem_type.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./coord_group.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./coord_source.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./in_mem_coord_source.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./coord_frame.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./editor_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./editor_type_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./mol.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Up-to-date: /<>/debian/tmp/usr/include/ost/mol/./entity_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_observer_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_property_mapper.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_view.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_visitor.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./entity_visitor_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./handle_type_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./ics_editor.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./not_connected_error.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./property_id.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./query.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./query_error.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./query_state.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./residue_base.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./residue_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./residue_prop.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./residue_view.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./sec_structure.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./spatial_organizer.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./surface.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./surface_builder.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./builder.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./surface_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./surface_prop.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./torsion_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./transfer_connectivity.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./query_view_wrapper.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./view_type_fw.hh -- Up-to-date: /<>/debian/tmp/usr/include/ost/mol/./view_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./xcs_editor.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./bounding_box.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./transform.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/./module_config.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/_ost_mol.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/_ost_mol.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/./__init__.pyc -- Installing: /<>/debian/tmp/usr/bin/lddt -- Set runtime path of "/<>/debian/tmp/usr/bin/lddt" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_mol_alg.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_mol_alg.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_mol_alg.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_mol_alg.so -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./svd_superpose.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./sec_structure_segments.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./local_dist_diff_test.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./distance_test_common.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./distance_rmsd_test.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./superpose_frames.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./filter_clashes.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./construct_cbeta.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./clash_score.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./trajectory_analysis.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./structure_analysis.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./pdbize.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./adjacency_bitmap.hh -- Up-to-date: /<>/debian/tmp/usr/include/ost/mol/alg/./consistency_checks.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./contact_overlap.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./domain_find.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./similarity_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./accessibility.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./sec_struct.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./nonstandard.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./molck.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./find_membrane.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/alg/./entity_to_density.hh -- Installing: /<>/debian/tmp/usr/share/openstructure/atom_scattering_properties.txt -- Installing: /<>/debian/tmp/usr/share/openstructure/stereo_chemical_props.txt -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/_ost_mol_alg.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./views.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./superpose.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./qsscoring.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./trajectory_analysis.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./structure_analysis.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./helix_kinks.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./hbond.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./views.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./superpose.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./qsscoring.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./trajectory_analysis.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./structure_analysis.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./helix_kinks.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/alg/./hbond.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_mol_mm.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_mol_mm.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_mol_mm.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_mol_mm.so -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./forcefield.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./ff_reader.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./buildingblock.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./block_modifiers.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./gromacs_block_modifiers.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./heuristic_block_modifiers.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./interaction.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./settings.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./simulation.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./modeller.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./observer.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./state_extractor.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./system_creator.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./topology_creator.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./index.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./topology.hh -- Installing: /<>/debian/tmp/usr/include/ost/mol/mm/./steep.hh -- Installing: /<>/debian/tmp/usr/share/openstructure/forcefields/AMBER03.dat -- Installing: /<>/debian/tmp/usr/share/openstructure/forcefields/CHARMM27.dat -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/_ost_mol_mm.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./antechamber.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/mol/mm/./antechamber.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_seq.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_seq.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_seq.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_seq.so -- Installing: /<>/debian/tmp/usr/include/ost/seq/impl/sequence_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/impl/sequence_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl_fw.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/impl/sequence_list_impl.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/impl/sequence_list_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./sequence_list.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./sequence_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./alignment_handle.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./sequence_op.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./aligned_region.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./aligned_column.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./aligned_column_iterator.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./invalid_sequence.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./views_from_sequences.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/./profile_handle.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/_ost_seq.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/_ost_seq.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/libost_seq_alg.so.2.3.0 -- Installing: /<>/debian/tmp/usr/lib/libost_seq_alg.so.2.3 -- Set runtime path of "/<>/debian/tmp/usr/lib/libost_seq_alg.so.2.3.0" to "" -- Installing: /<>/debian/tmp/usr/lib/libost_seq_alg.so -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./alignment_opts.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./clip_alignment.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./conservation.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./contact_prediction_score.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./contact_weight_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./distance_map.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./entropy.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./global_align.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./ins_del.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./local_align.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./merge_pairwise_alignments.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./module_config.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./pair_subst_weight_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./semiglobal_align.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./sequence_identity.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./sequence_similarity.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./subst_weight_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./variance_map.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./default_contact_weight_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./hmm_pseudo_counts.hh -- Installing: /<>/debian/tmp/usr/include/ost/seq/alg/./hmm_score.hh -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/_ost_seq_alg.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./__init__.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./mat.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./renumber.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./aaindex.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./__init__.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./mat.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./renumber.pyc -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/seq/alg/./aaindex.pyc -- Installing: /<>/debian/tmp/usr/share/openstructure/aaindex/aaindex1 -- Installing: /<>/debian/tmp/usr/share/openstructure/aaindex/aaindex2 -- Installing: /<>/debian/tmp/usr/share/openstructure/aaindex/aaindex3 -- Installing: /<>/debian/tmp/usr/lib/openstructure/libexec/ost_config -- Installing: /<>/debian/tmp/usr/bin/ost -- Installing: /<>/debian/tmp/usr/bin/dng -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/ost_startup.py -- Installing: /<>/debian/tmp/usr/lib/python3.10/dist-packages/ost/dng_startup.py -- Installing: /<>/debian/tmp/usr/bin/molck -- Set runtime path of "/<>/debian/tmp/usr/bin/molck" to "" -- Installing: /<>/debian/tmp/usr/lib/openstructure/libexec/ost-compare-structures make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' find debian/tmp/usr/lib -name '*.pyc' | xargs --no-run-if-empty rm make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian/python3-ost/usr/lib/python3/dist-packages -type f \ | xargs --no-run-if-empty chmod -x make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_python3 I: dh_python3 fs:464: renaming _ost_base.so to _ost_base.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_bindings.so to _ost_bindings.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_io.so to _ost_io.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_gui.so to _ost_gui.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_gfx.so to _ost_gfx.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_seq.so to _ost_seq.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_seq_alg.so to _ost_seq_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_img.so to _ost_img.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_img_alg.so to _ost_img_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_info.so to _ost_info.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_conop.so to _ost_conop.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_db.so to _ost_db.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_mol.so to _ost_mol.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_mol_mm.so to _ost_mol_mm.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_mol_alg.so to _ost_mol_alg.cpython-310-x86_64-linux-gnu.so I: dh_python3 fs:464: renaming _ost_geom.so to _ost_geom.cpython-310-x86_64-linux-gnu.so dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a f8be133ad723e2db30089210c1469ac09bb21b6e 693cb56a4a8dc59c3481efbbcd1699bf0246a6f9 0bd26943def40cc32f90fa6cd11b2ed72ad03417 74b95e5216d687c6b80b5d9ddb03403441a5522c 30c82688b23f7a639e97f67ca230e6c6463675b8 de5feb5d6b9a7d5126de30e0a43514a1dbe7e57b 9218cd98972af0bda9370c6267586e59c09847d9 8bc3f32a63e4efe354a795d5c165ba81cb740dba ebc76ba3aea55eb465235441b5a3b16681eaf112 71d191b1b72896e87065f9c9e64eecfb1a58a4bd 41f56d56b985ff3c9544ed6a3bd99a14f244c3ec 4fb33795c49270144360d38b891623e2ec32cc3f 4d64d1fd342e4684765fea15f8d721a000bbec1b 91515e10fe3153a10261e630bba685a2db71b08e 50c03c3551863d9d4f07ed7a32e6f06c1e9cbb86 debugedit: debian/openstructure/usr/bin/chemdict_tool: Unknown DWARF DW_FORM_0x1f20 75683df4514982f31f6247d744130c6b7ade7b2f 5a4fad0ad7cc86c7f7d2d199e3c0c86fc6efd56d debugedit: debian/openstructure/usr/bin/gosty: Unknown DWARF DW_FORM_0x1f21 7d95beb76ca4079d01e6edad27622a197549a913 debugedit: debian/openstructure/usr/bin/molck: Unknown DWARF DW_FORM_0x1f20 c1c37cc9175feb1ad2486d7f86bdff2b73a22e81 debugedit: debian/openstructure/usr/bin/lddt: Unknown DWARF DW_FORM_0x1f21 e458b734c9dcc7694618bcddd8f662754b3f852a debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/_ost_base.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5aff572d542faa3f65549ddd3512d5e69af1dd55 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/bindings/_ost_bindings.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 893ef86f09a1303f4318476f123a56e9683676b5 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/io/_ost_io.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d984a3ee8491a643be88fb2ede9197d5f2165db5 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/gui/_ost_gui.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a608f15b90bd23ac618232b2a130469c5772a49b debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/gfx/_ost_gfx.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5e7e2e036a81ea176e2fae181dd3a6090762432c debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/seq/_ost_seq.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8d2e96fff2a72e3e49be1412cb95ec7505ff06ac debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/seq/alg/_ost_seq_alg.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f5ef73c7e7fa47335059ba29b97b8ca53af409e8 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/img/_ost_img.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bd1cd7295d80f363f4dd85079ea89b3c3caf3e5c debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/img/alg/_ost_img_alg.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4babffc6af24584604546f2f5e3df2fe9e1c5773 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/info/_ost_info.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 010d96007b1399ae36d8bfd45c4ad5adb0a04c99 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/conop/_ost_conop.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9b1ffdcef878439abc215e7aa7484eb16879e252 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/db/_ost_db.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 334dcb06e34234cb1bd85176162f48ed54a6510a debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/mol/_ost_mol.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9c4576b241c9bc543306081e92de8b9b3d940e6a debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/mol/mm/_ost_mol_mm.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b855c35bc54ff85cec62a395ae24876e65a7e275 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/mol/alg/_ost_mol_alg.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 f71965b37c7ca5d915f6ef2822ea78ac062aa4d9 debugedit: debian/python3-ost/usr/lib/python3/dist-packages/ost/geom/_ost_geom.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4b97669fdd2946ba6210dca9363afaf3eeb36c6d dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-ost: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-base2.3 (in debian/libost-base2.3); do_strip: , oemstrip: pkgstriptranslations: processing libost-mol2.3 (in debian/libost-mol2.3); do_strip: , oemstrip: pkgstriptranslations: processing libost-db-dev (in debian/libost-db-dev); do_strip: , oemstrip: pkgstriptranslations: processing libost-gui2.3-dbgsym (in debian/.debhelper/libost-gui2.3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-db-dev/DEBIAN/control, package libost-db-dev, directory debian/libost-db-dev pkgstripfiles: processing control file: debian/libost-base2.3/DEBIAN/control, package libost-base2.3, directory debian/libost-base2.3 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: Truncating usr/share/doc/libost-base2.3/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/libost-gui2.3/dbgsym-root/DEBIAN/control, package libost-gui2.3-dbgsym, directory debian/.debhelper/libost-gui2.3/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-base2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-gui2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-gui2.3/libost-gui2.3-dbgsym_2.3.0~rc-1_amd64.deb'. dpkg-deb: building package 'libost-base2.3' in '../libost-base2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-base2.3-dbgsym (in debian/.debhelper/libost-base2.3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/.debhelper/libost-base2.3/dbgsym-root/DEBIAN/control, package libost-base2.3-dbgsym, directory debian/.debhelper/libost-base2.3/dbgsym-root dpkg-deb: building package 'libost-base2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-base2.3/libost-base2.3-dbgsym_2.3.0~rc-1_amd64.deb'. Renaming libost-base2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-base2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-bindings2.3 (in debian/libost-bindings2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/libost-bindings2.3/DEBIAN/control, package libost-bindings2.3, directory debian/libost-bindings2.3 pkgstripfiles: processing control file: debian/libost-mol2.3/DEBIAN/control, package libost-mol2.3, directory debian/libost-mol2.3 INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-bindings2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-mol2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-bindings2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-bindings2.3' in '../libost-bindings2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-bindings2.3-dbgsym (in debian/.debhelper/libost-bindings2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstripfiles: processing control file: debian/.debhelper/libost-bindings2.3/dbgsym-root/DEBIAN/control, package libost-bindings2.3-dbgsym, directory debian/.debhelper/libost-bindings2.3/dbgsym-root dpkg-deb: building package 'libost-bindings2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-bindings2.3/libost-bindings2.3-dbgsym_2.3.0~rc-1_amd64.deb'. Renaming libost-bindings2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-bindings2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-conop2.3 (in debian/libost-conop2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-conop2.3/DEBIAN/control, package libost-conop2.3, directory debian/libost-conop2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-conop2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-mol2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-conop2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-conop2.3' in '../libost-conop2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-conop2.3-dbgsym (in debian/.debhelper/libost-conop2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/.debhelper/libost-conop2.3/dbgsym-root/DEBIAN/control, package libost-conop2.3-dbgsym, directory debian/.debhelper/libost-conop2.3/dbgsym-root dpkg-deb: building package 'libost-conop2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-conop2.3/libost-conop2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-conop2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-conop2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstriptranslations: processing libost-db2.3 (in debian/libost-db2.3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming libost-gui2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-gui2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstripfiles: processing control file: debian/libost-db2.3/DEBIAN/control, package libost-db2.3, directory debian/libost-db2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-db2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-db2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-db2.3' in '../libost-db2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstriptranslations: processing libost-img-alg2.3 (in debian/libost-img-alg2.3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-db2.3-dbgsym (in debian/.debhelper/libost-db2.3/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: processing control file: debian/libost-img-alg2.3/DEBIAN/control, package libost-img-alg2.3, directory debian/libost-img-alg2.3 INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-db2.3/dbgsym-root/DEBIAN/control, package libost-db2.3-dbgsym, directory debian/.debhelper/libost-db2.3/dbgsym-root dpkg-deb: building package 'libost-db2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-db2.3/libost-db2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... Renaming libost-db2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-db2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-geom2.3 (in debian/libost-geom2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-geom2.3/DEBIAN/control, package libost-geom2.3, directory debian/libost-geom2.3 pkgstripfiles: Truncating usr/share/doc/libost-geom2.3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-geom2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-geom2.3' in '../libost-geom2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstriptranslations: processing libost-geom2.3-dbgsym (in debian/.debhelper/libost-geom2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... pkgstripfiles: processing control file: debian/.debhelper/libost-geom2.3/dbgsym-root/DEBIAN/control, package libost-geom2.3-dbgsym, directory debian/.debhelper/libost-geom2.3/dbgsym-root dpkg-deb: building package 'libost-geom2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-geom2.3/libost-geom2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-geom2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-geom2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstriptranslations: processing libost-gfx2.3 (in debian/libost-gfx2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstripfiles: processing control file: debian/libost-gfx2.3/DEBIAN/control, package libost-gfx2.3, directory debian/libost-gfx2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-gfx2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-img-alg2.3... Searching for duplicated docs in dependency libost-img2.3... Searching for duplicated docs in dependency libost-info2.3... Searching for duplicated docs in dependency libost-mol2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-gfx2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-gfx2.3' in '../libost-gfx2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstriptranslations: processing libost-gfx2.3-dbgsym (in debian/.debhelper/libost-gfx2.3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... pkgstripfiles: processing control file: debian/.debhelper/libost-gfx2.3/dbgsym-root/DEBIAN/control, package libost-gfx2.3-dbgsym, directory debian/.debhelper/libost-gfx2.3/dbgsym-root dpkg-deb: building package 'libost-gfx2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-gfx2.3/libost-gfx2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-gfx2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-gfx2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... pkgstriptranslations: processing libost-gui2.3 (in debian/libost-gui2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-img-alg2.3) ... pkgstripfiles: processing control file: debian/libost-gui2.3/DEBIAN/control, package libost-gui2.3, directory debian/libost-gui2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-gui2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-conop2.3... Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-gfx2.3... Searching for duplicated docs in dependency libost-img-alg2.3... Searching for duplicated docs in dependency libost-img2.3... Searching for duplicated docs in dependency libost-io2.3... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Searching for duplicated docs in dependency libost-mol-alg2.3... Searching for duplicated docs in dependency libost-mol2.3... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Searching for duplicated docs in dependency libost-seq-alg2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-gui2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-gui2.3' in '../libost-gui2.3_2.3.0~rc-1_amd64.deb'. Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-img-alg2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-img2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-img-alg2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-img-alg2.3' in '../libost-img-alg2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-img-alg2.3-dbgsym (in debian/.debhelper/libost-img-alg2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-img-alg2.3/dbgsym-root/DEBIAN/control, package libost-img-alg2.3-dbgsym, directory debian/.debhelper/libost-img-alg2.3/dbgsym-root dpkg-deb: building package 'libost-img-alg2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-img-alg2.3/libost-img-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-img-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-img-alg2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-img2.3 (in debian/libost-img2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-img2.3/DEBIAN/control, package libost-img2.3, directory debian/libost-img2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-img2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-info2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-img2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-img2.3' in '../libost-img2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-img2.3-dbgsym (in debian/.debhelper/libost-img2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-img2.3/dbgsym-root/DEBIAN/control, package libost-img2.3-dbgsym, directory debian/.debhelper/libost-img2.3/dbgsym-root dpkg-deb: building package 'libost-img2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-img2.3/libost-img2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-img2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-img2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-info2.3 (in debian/libost-info2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-info2.3/DEBIAN/control, package libost-info2.3, directory debian/libost-info2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-info2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-info2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-info2.3' in '../libost-info2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-info2.3-dbgsym (in debian/.debhelper/libost-info2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-info2.3/dbgsym-root/DEBIAN/control, package libost-info2.3-dbgsym, directory debian/.debhelper/libost-info2.3/dbgsym-root dpkg-deb: building package 'libost-info2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-info2.3/libost-info2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-info2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-info2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstriptranslations: processing libost-io2.3 (in debian/libost-io2.3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-io2.3/DEBIAN/control, package libost-io2.3, directory debian/libost-io2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-io2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-conop2.3... Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-img-alg2.3... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Searching for duplicated docs in dependency libost-img2.3... Searching for duplicated docs in dependency libost-mol-alg2.3... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Searching for duplicated docs in dependency libost-mol2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-io2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-io2.3' in '../libost-io2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-io2.3-dbgsym (in debian/.debhelper/libost-io2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-io2.3/dbgsym-root/DEBIAN/control, package libost-io2.3-dbgsym, directory debian/.debhelper/libost-io2.3/dbgsym-root dpkg-deb: building package 'libost-io2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-io2.3/libost-io2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-io2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-io2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-alg2.3 (in debian/libost-mol-alg2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-mol-alg2.3/DEBIAN/control, package libost-mol-alg2.3, directory debian/libost-mol-alg2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-mol-alg2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-conop2.3... Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-img-alg2.3... Searching for duplicated docs in dependency libost-img2.3... Searching for duplicated docs in dependency libost-mol2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol-alg2.3 ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... dpkg-deb: building package 'libost-mol-alg2.3' in '../libost-mol-alg2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-alg2.3-dbgsym (in debian/.debhelper/libost-mol-alg2.3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstripfiles: processing control file: debian/.debhelper/libost-mol-alg2.3/dbgsym-root/DEBIAN/control, package libost-mol-alg2.3-dbgsym, directory debian/.debhelper/libost-mol-alg2.3/dbgsym-root dpkg-deb: building package 'libost-mol-alg2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-mol-alg2.3/libost-mol-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... Renaming libost-mol-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-mol-alg2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-mm2.3 (in debian/libost-mol-mm2.3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-mol2.3) ... pkgstripfiles: processing control file: debian/libost-mol-mm2.3/DEBIAN/control, package libost-mol-mm2.3, directory debian/libost-mol-mm2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-mol-mm2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-io2.3... Searching for duplicated docs in dependency libost-mol2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol-mm2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-mol-mm2.3' in '../libost-mol-mm2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-mol2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-geom2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-mol2.3' in '../libost-mol2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-mm2.3-dbgsym (in debian/.debhelper/libost-mol-mm2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol2.3-dbgsym (in debian/.debhelper/libost-mol2.3/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: processing control file: debian/.debhelper/libost-mol-mm2.3/dbgsym-root/DEBIAN/control, package libost-mol-mm2.3-dbgsym, directory debian/.debhelper/libost-mol-mm2.3/dbgsym-root dpkg-deb: building package 'libost-mol-mm2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-mol-mm2.3/libost-mol-mm2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-mol2.3/dbgsym-root/DEBIAN/control, package libost-mol2.3-dbgsym, directory debian/.debhelper/libost-mol2.3/dbgsym-root dpkg-deb: building package 'libost-mol2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-mol2.3/libost-mol2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming libost-mol-mm2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-mol-mm2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming libost-mol2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-mol2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstriptranslations: processing libost-seq-alg2.3 (in debian/libost-seq-alg2.3); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-seq-alg2.3/DEBIAN/control, package libost-seq-alg2.3, directory debian/libost-seq-alg2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-seq-alg2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-mol2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-seq-alg2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-seq-alg2.3' in '../libost-seq-alg2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-seq-alg2.3-dbgsym (in debian/.debhelper/libost-seq-alg2.3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/.debhelper/libost-seq-alg2.3/dbgsym-root/DEBIAN/control, package libost-seq-alg2.3-dbgsym, directory debian/.debhelper/libost-seq-alg2.3/dbgsym-root dpkg-deb: building package 'libost-seq-alg2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-seq-alg2.3/libost-seq-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming libost-seq-alg2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-seq-alg2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstriptranslations: processing libost-seq2.3 (in debian/libost-seq2.3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-seq2.3/DEBIAN/control, package libost-seq2.3, directory debian/libost-seq2.3 Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-seq2.3 to file in libost-base2.3 Searching for duplicated docs in dependency libost-info2.3... Searching for duplicated docs in dependency libost-mol2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-seq2.3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-seq2.3' in '../libost-seq2.3_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-seq2.3-dbgsym (in debian/.debhelper/libost-seq2.3/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libost-seq2.3/dbgsym-root/DEBIAN/control, package libost-seq2.3-dbgsym, directory debian/.debhelper/libost-seq2.3/dbgsym-root dpkg-deb: building package 'libost-seq2.3-dbgsym' in 'debian/.debhelper/scratch-space/build-libost-seq2.3/libost-seq2.3-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming libost-seq2.3-dbgsym_2.3.0~rc-1_amd64.deb to libost-seq2.3-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing openstructure (in debian/openstructure); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/openstructure/DEBIAN/control, package openstructure, directory debian/openstructure Searching for duplicated docs in dependency python3-ost... symlinking changelog.Debian.gz in openstructure to file in python3-ost Searching for duplicated docs in dependency libost-base2.3... Searching for duplicated docs in dependency libost-conop2.3... Searching for duplicated docs in dependency libost-gui2.3... Searching for duplicated docs in dependency libost-io2.3... Searching for duplicated docs in dependency libost-mol-alg2.3... Searching for duplicated docs in dependency libost-mol2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package openstructure ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value .oooooooooooooINFO: pkgstripfiles: waiting for lock (libost-db-dev) ... oooooINFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... ooINFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... oINFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... o pkgstripfiles: PNG optimization (22/0) for package openstructure took 12 s dpkg-deb: building package 'openstructure' in '../openstructure_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing openstructure-dbgsym (in debian/.debhelper/openstructure/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/.debhelper/openstructure/dbgsym-root/DEBIAN/control, package openstructure-dbgsym, directory debian/.debhelper/openstructure/dbgsym-root dpkg-deb: building package 'openstructure-dbgsym' in 'debian/.debhelper/scratch-space/build-openstructure/openstructure-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming openstructure-dbgsym_2.3.0~rc-1_amd64.deb to openstructure-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-ost (in debian/python3-ost); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-ost/DEBIAN/control, package python3-ost, directory debian/python3-ost Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in python3-ost to file in libost-base2.3 Searching for duplicated docs in dependency libost-bindings2.3... Searching for duplicated docs in dependency libost-conop2.3... Searching for duplicated docs in dependency libost-db2.3... Searching for duplicated docs in dependency libost-geom2.3... Searching for duplicated docs in dependency libost-gfx2.3... Searching for duplicated docs in dependency libost-gui2.3... Searching for duplicated docs in dependency libost-img-alg2.3... Searching for duplicated docs in dependency libost-img2.3... Searching for duplicated docs in dependency libost-info2.3... Searching for duplicated docs in dependency libost-io2.3... Searching for duplicated docs in dependency libost-mol-alg2.3... Searching for duplicated docs in dependency libost-mol-mm2.3... Searching for duplicated docs in dependency libost-mol2.3... Searching for duplicated docs in dependency libost-seq-alg2.3... Searching for duplicated docs in dependency libost-seq2.3... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-ost ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-ost' in '../python3-ost_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-ost-dbgsym (in debian/.debhelper/python3-ost/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/.debhelper/python3-ost/dbgsym-root/DEBIAN/control, package python3-ost-dbgsym, directory debian/.debhelper/python3-ost/dbgsym-root dpkg-deb: building package 'python3-ost-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-ost/python3-ost-dbgsym_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... 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INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... Renaming python3-ost-dbgsym_2.3.0~rc-1_amd64.deb to python3-ost-dbgsym_2.3.0~rc-1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-base-dev (in debian/libost-base-dev); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-base-dev/DEBIAN/control, package libost-base-dev, directory debian/libost-base-dev Searching for duplicated docs in dependency libost-base2.3... symlinking changelog.Debian.gz in libost-base-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-base-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-base-dev' in '../libost-base-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstriptranslations: processing libost-bindings-dev (in debian/libost-bindings-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/libost-bindings-dev/DEBIAN/control, package libost-bindings-dev, directory debian/libost-bindings-dev Searching for duplicated docs in dependency libost-bindings2.3... symlinking changelog.Debian.gz in libost-bindings-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-bindings-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-bindings-dev' in '../libost-bindings-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-conop-dev (in debian/libost-conop-dev); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libost-db-dev) ... pkgstripfiles: processing control file: debian/libost-conop-dev/DEBIAN/control, package libost-conop-dev, directory debian/libost-conop-dev Searching for duplicated docs in dependency libost-conop2.3... symlinking changelog.Debian.gz in libost-conop-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-conop-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-conop-dev' in '../libost-conop-dev_2.3.0~rc-1_amd64.deb'. Searching for duplicated docs in dependency libost-db2.3... symlinking changelog.Debian.gz in libost-db-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-db-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-db-dev' in '../libost-db-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-geom-dev (in debian/libost-geom-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-geom-dev/DEBIAN/control, package libost-geom-dev, directory debian/libost-geom-dev Searching for duplicated docs in dependency libost-geom2.3... symlinking changelog.Debian.gz in libost-geom-dev to file in libost-geom2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-geom-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-geom-dev' in '../libost-geom-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-gfx-dev (in debian/libost-gfx-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-gfx-dev/DEBIAN/control, package libost-gfx-dev, directory debian/libost-gfx-dev Searching for duplicated docs in dependency libost-gfx2.3... symlinking changelog.Debian.gz in libost-gfx-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-gfx-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-gfx-dev' in '../libost-gfx-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-gui-dev (in debian/libost-gui-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-gui-dev/DEBIAN/control, package libost-gui-dev, directory debian/libost-gui-dev Searching for duplicated docs in dependency libost-gui2.3... symlinking changelog.Debian.gz in libost-gui-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-gui-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-gui-dev' in '../libost-gui-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-img-alg-dev (in debian/libost-img-alg-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-img-alg-dev/DEBIAN/control, package libost-img-alg-dev, directory debian/libost-img-alg-dev Searching for duplicated docs in dependency libost-img-alg2.3... symlinking changelog.Debian.gz in libost-img-alg-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-img-alg-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-img-alg-dev' in '../libost-img-alg-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-img-dev (in debian/libost-img-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-img-dev/DEBIAN/control, package libost-img-dev, directory debian/libost-img-dev Searching for duplicated docs in dependency libost-img2.3... symlinking changelog.Debian.gz in libost-img-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-img-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-img-dev' in '../libost-img-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-info-dev (in debian/libost-info-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-info-dev/DEBIAN/control, package libost-info-dev, directory debian/libost-info-dev Searching for duplicated docs in dependency libost-info2.3... symlinking changelog.Debian.gz in libost-info-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-info-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-info-dev' in '../libost-info-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-io-dev (in debian/libost-io-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-io-dev/DEBIAN/control, package libost-io-dev, directory debian/libost-io-dev Searching for duplicated docs in dependency libost-io2.3... symlinking changelog.Debian.gz in libost-io-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-io-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-io-dev' in '../libost-io-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-alg-dev (in debian/libost-mol-alg-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-mol-alg-dev/DEBIAN/control, package libost-mol-alg-dev, directory debian/libost-mol-alg-dev Searching for duplicated docs in dependency libost-mol-alg2.3... symlinking changelog.Debian.gz in libost-mol-alg-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol-alg-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-mol-alg-dev' in '../libost-mol-alg-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-mm-dev (in debian/libost-mol-mm-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-mol-mm-dev/DEBIAN/control, package libost-mol-mm-dev, directory debian/libost-mol-mm-dev Searching for duplicated docs in dependency libost-mol-mm2.3... symlinking changelog.Debian.gz in libost-mol-mm-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol-mm-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-mol-mm-dev' in '../libost-mol-mm-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-mol-dev (in debian/libost-mol-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-mol-dev/DEBIAN/control, package libost-mol-dev, directory debian/libost-mol-dev Searching for duplicated docs in dependency libost-mol2.3... symlinking changelog.Debian.gz in libost-mol-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-mol-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-mol-dev' in '../libost-mol-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-seq-alg-dev (in debian/libost-seq-alg-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-seq-alg-dev/DEBIAN/control, package libost-seq-alg-dev, directory debian/libost-seq-alg-dev Searching for duplicated docs in dependency libost-seq-alg2.3... symlinking changelog.Debian.gz in libost-seq-alg-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-seq-alg-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-seq-alg-dev' in '../libost-seq-alg-dev_2.3.0~rc-1_amd64.deb'. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libost-seq-dev (in debian/libost-seq-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libost-seq-dev/DEBIAN/control, package libost-seq-dev, directory debian/libost-seq-dev Searching for duplicated docs in dependency libost-seq2.3... symlinking changelog.Debian.gz in libost-seq-dev to file in libost-base2.3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libost-seq-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libost-seq-dev' in '../libost-seq-dev_2.3.0~rc-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../openstructure_2.3.0~rc-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../openstructure_2.3.0~rc-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-20T00:15:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ openstructure_2.3.0~rc-1_amd64.changes: --------------------------------------- Format: 1.8 Date: Wed, 19 Jan 2022 06:42:42 -0500 Source: openstructure Binary: libost-base-dev libost-base2.3 libost-bindings-dev libost-bindings2.3 libost-conop-dev libost-conop2.3 libost-db-dev libost-db2.3 libost-geom-dev libost-geom2.3 libost-gfx-dev libost-gfx2.3 libost-gui-dev libost-gui2.3 libost-img-alg-dev libost-img-alg2.3 libost-img-dev libost-img2.3 libost-info-dev libost-info2.3 libost-io-dev libost-io2.3 libost-mol-alg-dev libost-mol-alg2.3 libost-mol-dev libost-mol-mm-dev libost-mol-mm2.3 libost-mol2.3 libost-seq-alg-dev libost-seq-alg2.3 libost-seq-dev libost-seq2.3 openstructure python3-ost Built-For-Profiles: noudeb Architecture: amd64 Version: 2.3.0~rc-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: libost-base-dev - Open-Source Computational Structural Biology Framework libost-base2.3 - Open-Source Computational Structural Biology Framework libost-bindings-dev - Open-Source Computational Structural Biology Framework libost-bindings2.3 - Open-Source Computational Structural Biology Framework libost-conop-dev - Open-Source Computational Structural Biology Framework libost-conop2.3 - Open-Source Computational Structural Biology Framework libost-db-dev - Open-Source Computational Structural Biology Framework libost-db2.3 - Open-Source Computational Structural Biology Framework libost-geom-dev - Open-Source Computational Structural Biology Framework libost-geom2.3 - Open-Source Computational Structural Biology Framework libost-gfx-dev - Open-Source Computational Structural Biology Framework libost-gfx2.3 - Open-Source Computational Structural Biology Framework libost-gui-dev - Open-Source Computational Structural Biology Framework libost-gui2.3 - Open-Source Computational Structural Biology Framework libost-img-alg-dev - Open-Source Computational Structural Biology Framework libost-img-alg2.3 - Open-Source Computational Structural Biology Framework libost-img-dev - Open-Source Computational Structural Biology Framework libost-img2.3 - Open-Source Computational Structural Biology Framework libost-info-dev - Open-Source Computational Structural Biology Framework libost-info2.3 - Open-Source Computational Structural Biology Framework libost-io-dev - Open-Source Computational Structural Biology Framework libost-io2.3 - Open-Source Computational Structural Biology Framework libost-mol-alg-dev - Open-Source Computational Structural Biology Framework libost-mol-alg2.3 - Open-Source Computational Structural Biology Framework libost-mol-dev - Open-Source Computational Structural Biology Framework libost-mol-mm-dev - Open-Source Computational Structural Biology Framework libost-mol-mm2.3 - Open-Source Computational Structural Biology Framework libost-mol2.3 - Open-Source Computational Structural Biology Framework libost-seq-alg-dev - Open-Source Computational Structural Biology Framework libost-seq-alg2.3 - Open-Source Computational Structural Biology Framework libost-seq-dev - Open-Source Computational Structural Biology Framework libost-seq2.3 - Open-Source Computational Structural Biology Framework openstructure - Open-Source Computational Structural Biology Framework python3-ost - Open-Source Computational Structural Biology Framework - Python 3 Changes: openstructure (2.3.0~rc-1) unstable; urgency=medium . * New upstream version 2.3.0~rc * Adding a trigger to be run by libcifpp to generate compounds.chemlib. * Removing upstream-integrated patches from debian/patches/series. * Fixing compatibility with OpenMM 7.7 via upstream patch. * Disabling increase-test-tolerance.patch for now. * Bumping copyright years. 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autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-6ubuntu1), binutils (= 2.37.50.20220119-0ubuntu1), binutils-common (= 2.37.50.20220119-0ubuntu1), binutils-x86-64-linux-gnu (= 2.37.50.20220119-0ubuntu1), blt (= 2.5.3+dfsg-4.1build1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), clustalw (= 2.1+lgpl-7), cmake (= 3.22.1-1ubuntu1), cmake-data (= 3.22.1-1ubuntu1), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-14ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-4), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-python (= 5.20220101), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dssp (= 4.0.0-2), dwz (= 0.14-1build1), emacsen-common (= 3.0.4), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-lyx (= 2.3.6-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-14ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-14ubuntu1), gcc-11-base (= 11.2.0-14ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran-11 (= 11.2.0-14ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), ibverbs-providers (= 38.0-1build1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.5.2-1), libasan6 (= 11.2.0-14ubuntu1), libatomic1 (= 11.2.0-14ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libavahi-client3 (= 0.8-5ubuntu4), libavahi-common-data (= 0.8-5ubuntu4), libavahi-common3 (= 0.8-5ubuntu4), libbinutils (= 2.37.50.20220119-0ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libboost-all-dev (= 1.74.0.3ubuntu6), libboost-atomic-dev (= 1.74.0.3ubuntu6), libboost-atomic1.74-dev (= 1.74.0-14ubuntu1), libboost-atomic1.74.0 (= 1.74.0-14ubuntu1), libboost-chrono-dev (= 1.74.0.3ubuntu6), libboost-chrono1.74-dev (= 1.74.0-14ubuntu1), libboost-chrono1.74.0 (= 1.74.0-14ubuntu1), libboost-container-dev (= 1.74.0.3ubuntu6), libboost-container1.74-dev (= 1.74.0-14ubuntu1), libboost-container1.74.0 (= 1.74.0-14ubuntu1), libboost-context-dev (= 1.74.0.3ubuntu6), libboost-context1.74-dev (= 1.74.0-14ubuntu1), libboost-context1.74.0 (= 1.74.0-14ubuntu1), libboost-coroutine-dev (= 1.74.0.3ubuntu6), libboost-coroutine1.74-dev (= 1.74.0-14ubuntu1), libboost-coroutine1.74.0 (= 1.74.0-14ubuntu1), libboost-date-time-dev (= 1.74.0.3ubuntu6), libboost-date-time1.74-dev (= 1.74.0-14ubuntu1), libboost-date-time1.74.0 (= 1.74.0-14ubuntu1), libboost-dev (= 1.74.0.3ubuntu6), libboost-exception-dev (= 1.74.0.3ubuntu6), libboost-exception1.74-dev (= 1.74.0-14ubuntu1), libboost-fiber-dev (= 1.74.0.3ubuntu6), libboost-fiber1.74-dev (= 1.74.0-14ubuntu1), libboost-fiber1.74.0 (= 1.74.0-14ubuntu1), libboost-filesystem-dev (= 1.74.0.3ubuntu6), libboost-filesystem1.74-dev (= 1.74.0-14ubuntu1), libboost-filesystem1.74.0 (= 1.74.0-14ubuntu1), libboost-graph-dev (= 1.74.0.3ubuntu6), libboost-graph-parallel-dev (= 1.74.0.3ubuntu6), libboost-graph-parallel1.74-dev (= 1.74.0-14ubuntu1), libboost-graph-parallel1.74.0 (= 1.74.0-14ubuntu1), libboost-graph1.74-dev (= 1.74.0-14ubuntu1), libboost-graph1.74.0 (= 1.74.0-14ubuntu1), libboost-iostreams-dev (= 1.74.0.3ubuntu6), libboost-iostreams1.74-dev (= 1.74.0-14ubuntu1), libboost-iostreams1.74.0 (= 1.74.0-14ubuntu1), libboost-locale-dev (= 1.74.0.3ubuntu6), libboost-locale1.74-dev (= 1.74.0-14ubuntu1), libboost-locale1.74.0 (= 1.74.0-14ubuntu1), libboost-log-dev (= 1.74.0.3ubuntu6), libboost-log1.74-dev (= 1.74.0-14ubuntu1), libboost-log1.74.0 (= 1.74.0-14ubuntu1), libboost-math-dev (= 1.74.0.3ubuntu6), libboost-math1.74-dev (= 1.74.0-14ubuntu1), libboost-math1.74.0 (= 1.74.0-14ubuntu1), libboost-mpi-dev (= 1.74.0.3ubuntu6), libboost-mpi-python-dev (= 1.74.0.3ubuntu6), libboost-mpi-python1.74-dev (= 1.74.0-14ubuntu1), libboost-mpi-python1.74.0 (= 1.74.0-14ubuntu1), libboost-mpi1.74-dev (= 1.74.0-14ubuntu1), libboost-mpi1.74.0 (= 1.74.0-14ubuntu1), libboost-nowide-dev (= 1.74.0.3ubuntu6), libboost-nowide1.74-dev (= 1.74.0-14ubuntu1), libboost-nowide1.74.0 (= 1.74.0-14ubuntu1), libboost-numpy-dev (= 1.74.0.3ubuntu6), libboost-numpy1.74-dev (= 1.74.0-14ubuntu1), libboost-numpy1.74.0 (= 1.74.0-14ubuntu1), libboost-program-options-dev (= 1.74.0.3ubuntu6), libboost-program-options1.74-dev (= 1.74.0-14ubuntu1), libboost-program-options1.74.0 (= 1.74.0-14ubuntu1), libboost-python-dev (= 1.74.0.3ubuntu6), libboost-python1.74-dev (= 1.74.0-14ubuntu1), libboost-python1.74.0 (= 1.74.0-14ubuntu1), libboost-random-dev (= 1.74.0.3ubuntu6), libboost-random1.74-dev (= 1.74.0-14ubuntu1), libboost-random1.74.0 (= 1.74.0-14ubuntu1), libboost-regex-dev (= 1.74.0.3ubuntu6), libboost-regex1.74-dev (= 1.74.0-14ubuntu1), libboost-regex1.74.0 (= 1.74.0-14ubuntu1), libboost-serialization-dev (= 1.74.0.3ubuntu6), libboost-serialization1.74-dev (= 1.74.0-14ubuntu1), libboost-serialization1.74.0 (= 1.74.0-14ubuntu1), libboost-stacktrace-dev (= 1.74.0.3ubuntu6), libboost-stacktrace1.74-dev (= 1.74.0-14ubuntu1), libboost-stacktrace1.74.0 (= 1.74.0-14ubuntu1), libboost-system-dev (= 1.74.0.3ubuntu6), libboost-system1.74-dev (= 1.74.0-14ubuntu1), libboost-system1.74.0 (= 1.74.0-14ubuntu1), libboost-test-dev (= 1.74.0.3ubuntu6), libboost-test1.74-dev (= 1.74.0-14ubuntu1), libboost-test1.74.0 (= 1.74.0-14ubuntu1), libboost-thread-dev (= 1.74.0.3ubuntu6), libboost-thread1.74-dev (= 1.74.0-14ubuntu1), libboost-thread1.74.0 (= 1.74.0-14ubuntu1), libboost-timer-dev (= 1.74.0.3ubuntu6), libboost-timer1.74-dev (= 1.74.0-14ubuntu1), libboost-timer1.74.0 (= 1.74.0-14ubuntu1), libboost-tools-dev (= 1.74.0.3ubuntu6), libboost-type-erasure-dev (= 1.74.0.3ubuntu6), libboost-type-erasure1.74-dev (= 1.74.0-14ubuntu1), libboost-type-erasure1.74.0 (= 1.74.0-14ubuntu1), libboost-wave-dev (= 1.74.0.3ubuntu6), libboost-wave1.74-dev (= 1.74.0-14ubuntu1), libboost-wave1.74.0 (= 1.74.0-14ubuntu1), libboost1.74-dev (= 1.74.0-14ubuntu1), libboost1.74-tools-dev (= 1.74.0-14ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build2), libcbor0.6 (= 0.6.0-0ubuntu4), libcc1-0 (= 11.2.0-14ubuntu1), libcifpp-data (= 1.0.1-5), libcifpp1 (= 1.0.1-5), libcom-err2 (= 1.46.5-2ubuntu1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37.50.20220119-0ubuntu1), libctf0 (= 2.37.50.20220119-0ubuntu1), libcups2 (= 2.3.3op2-7ubuntu2), libcurl3-gnutls (= 7.81.0-1), libcurl4 (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdbus-1-3 (= 1.12.20-2ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate-dev (= 1.8-1ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdouble-conversion3 (= 3.1.7-4), libdpkg-perl (= 1.21.1ubuntu1), libdrm-amdgpu1 (= 2.4.107-8ubuntu1), libdrm-common (= 2.4.107-8ubuntu1), libdrm-intel1 (= 2.4.107-8ubuntu1), libdrm-nouveau2 (= 2.4.107-8ubuntu1), libdrm-radeon1 (= 2.4.107-8ubuntu1), libdrm2 (= 2.4.107-8ubuntu1), libdw1 (= 0.186-1), libedit2 (= 3.1-20210910-1), libegl-dev (= 1.4.0-1), libegl-mesa0 (= 21.3.4-1), libegl1 (= 1.4.0-1), libeigen3-dev (= 3.4.0-2ubuntu2), libelf1 (= 0.186-1), libevdev2 (= 1.12.0+dfsg-1), libevent-2.1-7 (= 2.1.12-stable-1build2), libevent-core-2.1-7 (= 2.1.12-stable-1build2), libevent-dev (= 2.1.12-stable-1build2), libevent-extra-2.1-7 (= 2.1.12-stable-1build2), libevent-openssl-2.1-7 (= 2.1.12-stable-1build2), libevent-pthreads-2.1-7 (= 2.1.12-stable-1build2), libexpat1 (= 2.4.3-1), libexpat1-dev (= 2.4.3-1), libfabric1 (= 1.11.0-3), libffi8 (= 3.4.2-4), libfftw3-bin (= 3.3.8-2ubuntu7), libfftw3-dev (= 3.3.8-2ubuntu7), libfftw3-double3 (= 3.3.8-2ubuntu7), libfftw3-long3 (= 3.3.8-2ubuntu7), libfftw3-quad3 (= 3.3.8-2ubuntu7), libfftw3-single3 (= 3.3.8-2ubuntu7), libfido2-1 (= 1.9.0-2), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.1+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgbm1 (= 21.3.4-1), libgcc-11-dev (= 11.2.0-14ubuntu1), libgcc-s1 (= 11.2.0-14ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-14ubuntu1), libgfortran5 (= 11.2.0-14ubuntu1), libgl-dev (= 1.4.0-1), libgl1 (= 1.4.0-1), libgl1-mesa-dev (= 21.3.4-1), libgl1-mesa-dri (= 21.3.4-1), libglapi-mesa (= 21.3.4-1), libgles-dev (= 1.4.0-1), libgles1 (= 1.4.0-1), libgles2 (= 1.4.0-1), libglib2.0-0 (= 2.71.0-2), libglu1-mesa (= 9.0.1-1build2), libglu1-mesa-dev (= 9.0.1-1build2), libglvnd-core-dev (= 1.4.0-1), libglvnd-dev (= 1.4.0-1), libglvnd0 (= 1.4.0-1), libglx-dev (= 1.4.0-1), libglx-mesa0 (= 21.3.4-1), libglx0 (= 1.4.0-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.2-5ubuntu1), libgomp1 (= 11.2.0-14ubuntu1), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.19.2-0ubuntu1), libgudev-1.0-0 (= 1:237-2), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhwloc-dev (= 2.7.0-1), libhwloc-plugins (= 2.7.0-1), libhwloc15 (= 2.7.0-1), libibverbs-dev (= 38.0-1build1), libibverbs1 (= 38.0-1build1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libimagequant0 (= 2.17.0-1), libinput-bin (= 1.19.3-1), libinput10 (= 1.19.3-1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-14ubuntu1), libjbig-dev (= 2.1-3.1build2), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-ui (= 1.13.0+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.9.1~dfsg-4), libjsoncpp25 (= 1.9.5-2), libk5crypto3 (= 1.19.2-0ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-0ubuntu1), libkrb5support0 (= 1.19.2-0ubuntu1), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), libllvm13 (= 1:13.0.1~+rc1-1~exp4build1), liblsan0 (= 11.2.0-14ubuntu1), libltdl-dev (= 2.4.6-15build1), libltdl7 (= 2.4.6-15build1), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmd4c0 (= 0.4.8-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libmtdev1 (= 1.1.6-1build3), libncurses6 (= 6.3-2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnl-3-200 (= 3.4.0-1build3), libnl-3-dev (= 3.4.0-1build3), libnl-route-3-200 (= 3.4.0-1build3), libnl-route-3-dev (= 3.4.0-1build3), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libnuma-dev (= 2.0.14-3ubuntu1), libnuma1 (= 2.0.14-3ubuntu1), libopengl-dev (= 1.4.0-1), libopengl0 (= 1.4.0-1), libopenjp2-7 (= 2.4.0-6), libopenmm-dev (= 7.6.0+dfsg-1), libopenmm-plugins (= 7.6.0+dfsg-1), libopenmm7.6 (= 7.6.0+dfsg-1), libopenmpi-dev (= 4.1.2-1ubuntu1), libopenmpi3 (= 4.1.2-1ubuntu1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-10ubuntu2), libpam-modules-bin (= 1.4.0-10ubuntu2), libpam-runtime (= 1.4.0-10ubuntu2), libpam0g (= 1.4.0-10ubuntu2), libpciaccess0 (= 0.16-3), libpcre2-16-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.5-1), libpmix-dev (= 4.1.1~rc6-1ubuntu1), libpmix2 (= 4.1.1~rc6-1ubuntu1), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libprocps8 (= 2:3.3.17-5ubuntu3), libpsl5 (= 0.21.0-1.2build1), libpsm-infinipath1 (= 3.3+20.604758e7-6.1), libpsm2-2 (= 11.2.185-1), libpthread-stubs0-dev (= 0.4-1build1), libpython3-dev (= 3.10.1-0ubuntu1), libpython3-stdlib (= 3.10.1-0ubuntu1), libpython3.10 (= 3.10.2-1), libpython3.10-dev (= 3.10.2-1), libpython3.10-minimal (= 3.10.2-1), libpython3.10-stdlib (= 3.10.2-1), libpython3.9-minimal (= 3.9.10-1), libpython3.9-stdlib (= 3.9.10-1), libqhull-r8.0 (= 2020.2-4), libqt5concurrent5 (= 5.15.2+dfsg-14ubuntu3), libqt5core5a (= 5.15.2+dfsg-14ubuntu3), libqt5dbus5 (= 5.15.2+dfsg-14ubuntu3), libqt5designer5 (= 5.15.2-5), libqt5gui5 (= 5.15.2+dfsg-14ubuntu3), libqt5help5 (= 5.15.2-5), libqt5network5 (= 5.15.2+dfsg-14ubuntu3), libqt5opengl5 (= 5.15.2+dfsg-14ubuntu3), libqt5opengl5-dev (= 5.15.2+dfsg-14ubuntu3), libqt5printsupport5 (= 5.15.2+dfsg-14ubuntu3), libqt5sql5 (= 5.15.2+dfsg-14ubuntu3), libqt5test5 (= 5.15.2+dfsg-14ubuntu3), libqt5widgets5 (= 5.15.2+dfsg-14ubuntu3), libqt5xml5 (= 5.15.2+dfsg-14ubuntu3), libquadmath0 (= 11.2.0-14ubuntu1), libraqm0 (= 0.7.0-4ubuntu1), librdmacm1 (= 38.0-1build1), libreadline8 (= 8.1.2-1), librhash0 (= 1.4.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-3), libsasl2-modules-db (= 2.1.27+dfsg2-3), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1build1), libsemanage-common (= 3.3-1build1), libsemanage2 (= 3.3-1build1), libsensors-config (= 1:3.6.0-7build1), libsensors5 (= 1:3.6.0-7build1), libsepol2 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libsqlite3-0 (= 3.37.2-2), libsqlite3-dev (= 3.37.2-2), libssh-4 (= 0.9.6-2), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-14ubuntu1), libstdc++6 (= 11.2.0-14ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-2ubuntu4), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libtiff-dev (= 4.3.0-2), libtiff5 (= 4.3.0-2), libtiffxx5 (= 4.3.0-2), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-14ubuntu1), libubsan1 (= 11.2.0-14ubuntu1), libuchardet0 (= 0.0.7-1build1), libucx0 (= 1.12.0-1), libudev1 (= 249.5-2ubuntu4), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libuv1 (= 1.43.0-1), libvulkan-dev (= 1.2.198.1-2), libvulkan1 (= 1.2.198.1-2), libwacom-common (= 1.12-1), libwacom2 (= 1.12-1), libwayland-client0 (= 1.19.0-2build1), libwayland-server0 (= 1.19.0-2build1), libwebp6 (= 0.6.1-2.1build1), libwebpdemux2 (= 0.6.1-2.1build1), libwebpmux3 (= 0.6.1-2.1build1), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libx11-dev (= 2:1.7.2-2), libx11-xcb1 (= 2:1.7.2-2), libxau-dev (= 1:1.0.9-1build4), libxau6 (= 1:1.0.9-1build4), libxcb-dri2-0 (= 1.14-3ubuntu2), libxcb-dri3-0 (= 1.14-3ubuntu2), libxcb-glx0 (= 1.14-3ubuntu2), libxcb-icccm4 (= 0.4.1-1.1build1), libxcb-image0 (= 0.4.0-1build2), libxcb-keysyms1 (= 0.4.0-1build2), libxcb-present0 (= 1.14-3ubuntu2), libxcb-randr0 (= 1.14-3ubuntu2), libxcb-render-util0 (= 0.3.9-1build2), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shape0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb-sync1 (= 1.14-3ubuntu2), libxcb-util1 (= 0.4.0-1build1), libxcb-xfixes0 (= 1.14-3ubuntu2), libxcb-xinerama0 (= 1.14-3ubuntu2), libxcb-xinput0 (= 1.14-3ubuntu2), libxcb-xkb1 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxcb1-dev (= 1.14-3ubuntu2), libxdmcp-dev (= 1:1.1.3-0ubuntu4), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext-dev (= 2:1.3.4-1), libxext6 (= 2:1.3.4-1), libxfixes3 (= 1:5.0.3-2build2), libxft2 (= 2.3.3-0ubuntu4), libxkbcommon-x11-0 (= 1.3.1-1), libxkbcommon0 (= 1.3.1-1), libxml2 (= 2.9.12+dfsg-5), libxnvctrl0 (= 470.57.01-0ubuntu3), libxrender1 (= 1:0.9.10-1build3), libxshmfence1 (= 1.3-1build3), libxslt1.1 (= 1.1.34-4build1), libxss1 (= 1:1.2.3-1build1), libxxf86vm1 (= 1:1.1.4-1build2), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-17.17), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 18), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), mpi-default-bin (= 1.14), mpi-default-dev (= 1.14), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), ocl-icd-libopencl1 (= 2.2.14-3), openmpi-bin (= 4.1.2-1ubuntu1), openmpi-common (= 4.1.2-1ubuntu1), openssh-client (= 1:8.7p1-4), passwd (= 1:4.8.1-2ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-5ubuntu3), python-matplotlib-data (= 3.5.1-1), python3 (= 3.10.1-0ubuntu1), python3-appdirs (= 1.4.4-2), python3-attr (= 20.3.0-1ubuntu1), python3-brotli (= 1.0.9-2build4), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.1-0ubuntu1), python3-distutils (= 3.9.10-1), python3-fonttools (= 4.28.5-1), python3-fs (= 2.4.12-1), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.9.10-1), python3-lxml (= 4.7.1-1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-matplotlib (= 3.5.1-1), python3-minimal (= 3.10.1-0ubuntu1), python3-mpmath (= 1.2.1-2), python3-numpy (= 1:1.21.5-1), python3-packaging (= 21.3-1), python3-pil (= 9.0.0-1), python3-pil.imagetk (= 9.0.0-1), python3-pkg-resources (= 59.6.0-1.2), python3-pyparsing (= 2.4.7-1), python3-pyqt5 (= 5.15.6+dfsg-1ubuntu2), python3-pyqt5.sip (= 12.9.0-3), python3-scipy (= 1.7.1-1ubuntu1), python3-six (= 1.16.0-3), python3-sympy (= 1.7.1-3), python3-tk (= 3.9.10-1), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.12.1+dfsg1-1), python3.10 (= 3.10.2-1), python3.10-dev (= 3.10.2-1), python3.10-minimal (= 3.10.2-1), python3.9 (= 3.9.10-1), python3.9-minimal (= 3.9.10-1), qt5-qmake (= 5.15.2+dfsg-14ubuntu3), qt5-qmake-bin (= 5.15.2+dfsg-14ubuntu3), qtbase5-dev (= 5.15.2+dfsg-14ubuntu3), qtbase5-dev-tools (= 5.15.2+dfsg-14ubuntu3), qtchooser (= 66-2build1), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), shared-mime-info (= 2.1-2), sip-dev (= 4.19.25+dfsg-3), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unicode-data (= 14.0.0-1.1), util-linux (= 2.37.2-4ubuntu1), voronota (= 1.22.3149-1), x11-common (= 1:7.7+23ubuntu1), x11proto-dev (= 2021.5-1), xkb-data (= 2.33-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1642592562" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libost-base-dev_2.3.0~rc-1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 17600 bytes: control archive=1476 bytes. 646 bytes, 15 lines control 1999 bytes, 30 lines md5sums Package: libost-base-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 113 Depends: libost-base2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/ -rw-r--r-- root/root 2722 2021-10-26 20:45 ./usr/include/ost/base.hh -rw-r--r-- root/root 1698 2021-10-26 20:45 ./usr/include/ost/boost_filesystem_helper.hh -rw-r--r-- root/root 1439 2022-01-19 11:42 ./usr/include/ost/config.hh -rw-r--r-- root/root 1488 2021-10-26 20:45 ./usr/include/ost/dllexport.hh -rw-r--r-- root/root 1371 2021-10-26 20:45 ./usr/include/ost/dyn_cast.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/export_helper/ -rw-r--r-- root/root 6481 2021-10-26 20:45 ./usr/include/ost/export_helper/generic_property_def.hh -rw-r--r-- root/root 1616 2021-10-26 20:45 ./usr/include/ost/export_helper/pair_to_tuple_conv.hh -rw-r--r-- root/root 1697 2021-10-26 20:45 ./usr/include/ost/export_helper/vec_to_list_conv.hh -rw-r--r-- root/root 1756 2021-10-26 20:45 ./usr/include/ost/fixed_string.hh -rw-r--r-- root/root 10867 2021-10-26 20:45 ./usr/include/ost/generic_property.hh -rw-r--r-- root/root 1330 2021-10-26 20:45 ./usr/include/ost/integrity_error.hh -rw-r--r-- root/root 1541 2021-10-26 20:45 ./usr/include/ost/invalid_handle.hh -rw-r--r-- root/root 3134 2021-10-26 20:45 ./usr/include/ost/log.hh -rw-r--r-- root/root 2831 2021-10-26 20:45 ./usr/include/ost/log_sink.hh -rw-r--r-- root/root 1408 2021-10-26 20:45 ./usr/include/ost/message.hh -rw-r--r-- root/root 1289 2021-10-26 20:45 ./usr/include/ost/module_config.hh -rw-r--r-- root/root 5182 2021-10-26 20:45 ./usr/include/ost/paged_array.hh -rw-r--r-- root/root 1412 2021-10-26 20:45 ./usr/include/ost/platform.hh -rw-r--r-- root/root 3785 2021-10-26 20:45 ./usr/include/ost/pod_vector.hh -rw-r--r-- root/root 1515 2021-10-26 20:45 ./usr/include/ost/profile.hh -rw-r--r-- root/root 2047 2021-10-26 20:45 ./usr/include/ost/ptr_observer.hh -rw-r--r-- root/root 1570 2021-10-26 20:45 ./usr/include/ost/range.hh -rw-r--r-- root/root 157 2021-10-26 20:45 ./usr/include/ost/stdint.hh -rw-r--r-- root/root 7977 2021-10-26 20:45 ./usr/include/ost/stdint_msc.hh -rw-r--r-- root/root 5190 2021-10-26 20:45 ./usr/include/ost/string_ref.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/test_utils/ -rw-r--r-- root/root 1309 2021-10-26 20:45 ./usr/include/ost/test_utils/compare_files.hh -rw-r--r-- root/root 983 2021-10-26 20:45 ./usr/include/ost/tri_matrix.hh -rw-r--r-- root/root 3024 2021-10-26 20:45 ./usr/include/ost/units.hh -rw-r--r-- root/root 1234 2022-01-19 11:42 ./usr/include/ost/version.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_base.so -> libost_base.so.2.3 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-base-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-base-dev/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-base-dev/copyright libost-base2.3_2.3.0~rc-1_amd64.deb ----------------------------------- new Debian package, version 2.0. size 25532 bytes: control archive=811 bytes. 707 bytes, 15 lines control 219 bytes, 3 lines md5sums 45 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-base2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 87 Depends: libboost-filesystem1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_base.so.2.3 -> libost_base.so.2.3.0 -rw-r--r-- root/root 68424 2022-01-19 11:42 ./usr/lib/libost_base.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-base2.3/ -rw-r--r-- root/root 880 2022-01-19 11:42 ./usr/share/doc/libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-base2.3/copyright libost-bindings-dev_2.3.0~rc-1_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 4694 bytes: control archive=640 bytes. 653 bytes, 15 lines control 153 bytes, 2 lines md5sums Package: libost-bindings-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 24 Depends: libost-bindings2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/bindings/ -rw-r--r-- root/root 2644 2021-10-26 20:45 ./usr/include/ost/bindings/wrap_tmalign.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_bindings.so -> libost_bindings.so.2.3 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-bindings-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-bindings-dev/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-bindings-dev/copyright libost-bindings2.3_2.3.0~rc-1_amd64.deb --------------------------------------- new Debian package, version 2.0. size 74042 bytes: control archive=788 bytes. 791 bytes, 15 lines control 144 bytes, 2 lines md5sums 53 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-bindings2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 200 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libost-seq2.3 (>= 2.3.0~rc), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_bindings.so.2.3 -> libost_bindings.so.2.3.0 -rw-r--r-- root/root 183552 2022-01-19 11:42 ./usr/lib/libost_bindings.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-bindings2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-bindings2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-bindings2.3/copyright libost-conop-dev_2.3.0~rc-1_amd64.deb ------------------------------------- new Debian package, version 2.0. size 11528 bytes: control archive=992 bytes. 647 bytes, 15 lines control 995 bytes, 14 lines md5sums Package: libost-conop-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 64 Depends: libost-conop2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/conop/ -rw-r--r-- root/root 4465 2021-10-26 20:45 ./usr/include/ost/conop/amino_acids.hh -rw-r--r-- root/root 7458 2021-10-26 20:45 ./usr/include/ost/conop/compound.hh -rw-r--r-- root/root 2505 2021-10-26 20:45 ./usr/include/ost/conop/compound_lib.hh -rw-r--r-- root/root 650 2021-10-26 20:45 ./usr/include/ost/conop/compound_lib_base.hh -rw-r--r-- root/root 1874 2021-10-26 20:45 ./usr/include/ost/conop/conop.hh -rw-r--r-- root/root 4342 2021-10-26 20:45 ./usr/include/ost/conop/diag.hh -rw-r--r-- root/root 1987 2021-10-26 20:45 ./usr/include/ost/conop/heuristic.hh -rw-r--r-- root/root 828 2021-10-26 20:45 ./usr/include/ost/conop/minimal_compound_lib.hh -rw-r--r-- root/root 881 2021-10-26 20:45 ./usr/include/ost/conop/model_check.hh -rw-r--r-- root/root 1266 2021-10-26 20:45 ./usr/include/ost/conop/module_config.hh -rw-r--r-- root/root 5489 2021-10-26 20:45 ./usr/include/ost/conop/processor.hh -rw-r--r-- root/root 2805 2021-10-26 20:45 ./usr/include/ost/conop/ring_finder.hh -rw-r--r-- root/root 3655 2021-10-26 20:45 ./usr/include/ost/conop/rule_based.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_conop.so -> libost_conop.so.2.3 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-conop-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-conop-dev/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-conop-dev/copyright libost-conop2.3_2.3.0~rc-1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 154150 bytes: control archive=790 bytes. 755 bytes, 15 lines control 138 bytes, 2 lines md5sums 47 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-conop2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 500 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libsqlite3-0 (>= 3.6.11), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_conop.so.2.3 -> libost_conop.so.2.3.0 -rw-r--r-- root/root 491240 2022-01-19 11:42 ./usr/lib/libost_conop.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-conop2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-conop2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-conop2.3/copyright libost-db-dev_2.3.0~rc-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 7368 bytes: control archive=800 bytes. 641 bytes, 15 lines control 498 bytes, 7 lines md5sums Package: libost-db-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 42 Depends: libost-db2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/db/ -rw-r--r-- root/root 4159 2021-10-26 20:45 ./usr/include/ost/db/binary_container.hh -rw-r--r-- root/root 2246 2021-10-26 20:45 ./usr/include/ost/db/extract_data_helper.hh -rw-r--r-- root/root 3150 2021-10-26 20:45 ./usr/include/ost/db/linear_indexer.hh -rw-r--r-- root/root 1251 2021-10-26 20:45 ./usr/include/ost/db/module_config.hh -rw-r--r-- root/root 1681 2021-10-26 20:45 ./usr/include/ost/db/sqlite_conv.hh -rw-r--r-- root/root 4807 2021-10-26 20:45 ./usr/include/ost/db/sqlite_wrap.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_db.so -> libost_db.so.2.3 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-db-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-db-dev/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-db-dev/copyright libost-db2.3_2.3.0~rc-1_amd64.deb --------------------------------- new Debian package, version 2.0. size 34872 bytes: control archive=785 bytes. 752 bytes, 15 lines control 132 bytes, 2 lines md5sums 41 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-db2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 107 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-seq2.3 (>= 2.3.0~rc), libsqlite3-0 (>= 3.6.11), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_db.so.2.3 -> libost_db.so.2.3.0 -rw-r--r-- root/root 88976 2022-01-19 11:42 ./usr/lib/libost_db.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-db2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-db2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-db2.3/copyright libost-geom-dev_2.3.0~rc-1_amd64.deb ------------------------------------ new Debian package, version 2.0. size 18866 bytes: control archive=1407 bytes. 646 bytes, 15 lines control 2105 bytes, 31 lines md5sums Package: libost-geom-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 140 Depends: libost-geom2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/geom/ -rw-r--r-- root/root 2019 2021-10-26 20:45 ./usr/include/ost/geom/aligned_cuboid.hh -rw-r--r-- root/root 4639 2021-10-26 20:45 ./usr/include/ost/geom/circular_iterator.hh -rw-r--r-- root/root 1147 2021-10-26 20:45 ./usr/include/ost/geom/composite.hh -rw-r--r-- root/root 5133 2021-10-26 20:45 ./usr/include/ost/geom/composite2.hh -rw-r--r-- root/root 2122 2021-10-26 20:45 ./usr/include/ost/geom/composite2_op.hh -rw-r--r-- root/root 5736 2021-10-26 20:45 ./usr/include/ost/geom/composite3.hh -rw-r--r-- root/root 3193 2021-10-26 20:45 ./usr/include/ost/geom/composite3_op.hh -rw-r--r-- root/root 1159 2021-10-26 20:45 ./usr/include/ost/geom/composite_op.hh -rw-r--r-- root/root 1250 2021-10-26 20:45 ./usr/include/ost/geom/constants.hh -rw-r--r-- root/root 1295 2021-10-26 20:45 ./usr/include/ost/geom/def.hh -rw-r--r-- root/root 1863 2021-10-26 20:45 ./usr/include/ost/geom/exc.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/include/ost/geom/export_helper/ -rw-r--r-- root/root 1190 2021-10-26 20:45 ./usr/include/ost/geom/export_helper/vector.hh -rw-r--r-- root/root 1320 2021-10-26 20:45 ./usr/include/ost/geom/geom.hh -rw-r--r-- root/root 1142 2021-10-26 20:45 ./usr/include/ost/geom/mat.hh -rw-r--r-- root/root 3100 2021-10-26 20:45 ./usr/include/ost/geom/mat2.hh -rw-r--r-- root/root 6322 2021-10-26 20:45 ./usr/include/ost/geom/mat3.hh -rw-r--r-- root/root 3975 2021-10-26 20:45 ./usr/include/ost/geom/mat4.hh -rw-r--r-- root/root 1261 2021-10-26 20:45 ./usr/include/ost/geom/module_config.hh -rw-r--r-- root/root 2245 2021-10-26 20:45 ./usr/include/ost/geom/point_cloud.hh -rw-r--r-- root/root 3678 2021-10-26 20:45 ./usr/include/ost/geom/quat.hh -rw-r--r-- root/root 3349 2021-10-26 20:45 ./usr/include/ost/geom/transform.hh -rw-r--r-- root/root 1201 2021-10-26 20:45 ./usr/include/ost/geom/vec.hh -rw-r--r-- root/root 4350 2021-10-26 20:45 ./usr/include/ost/geom/vec2.hh -rw-r--r-- root/root 9628 2021-10-26 20:45 ./usr/include/ost/geom/vec3.hh -rw-r--r-- root/root 4921 2021-10-26 20:45 ./usr/include/ost/geom/vec4.hh -rw-r--r-- root/root 5953 2021-10-26 20:45 ./usr/include/ost/geom/vec_mat_predicates.hh -rw-r--r-- root/root 4094 2021-10-26 20:45 ./usr/include/ost/geom/vecmat2_op.hh -rw-r--r-- root/root 8200 2021-10-26 20:45 ./usr/include/ost/geom/vecmat3_op.hh -rw-r--r-- root/root 4871 2021-10-26 20:45 ./usr/include/ost/geom/vecmat4_op.hh -rw-r--r-- root/root 1172 2021-10-26 20:45 ./usr/include/ost/geom/vecmat_op.hh drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_geom.so -> libost_geom.so.2.3 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-geom-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-geom-dev/changelog.Debian.gz -> ../libost-geom2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-geom-dev/copyright libost-geom2.3_2.3.0~rc-1_amd64.deb ----------------------------------- new Debian package, version 2.0. size 59298 bytes: control archive=798 bytes. 669 bytes, 15 lines control 219 bytes, 3 lines md5sums 45 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-geom2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 171 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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libopengl0, libost-base2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-img-alg2.3 (>= 2.3.0~rc), libost-img2.3 (>= 2.3.0~rc), libost-info2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-gui-dev/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-gui-dev/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-gui-dev/copyright libost-gui2.3_2.3.0~rc-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 470998 bytes: control archive=909 bytes. 1213 bytes, 15 lines control 134 bytes, 2 lines md5sums 43 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-gui2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1641 Depends: libboost-python1.74.0 (>= 1.74.0), libc6 (>= 2.32), libgcc-s1 (>= 3.3.1), libglu1-mesa | libglu1, libopengl0, libost-base2.3 (>= 2.3.0~rc), libost-conop2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-gfx2.3 (>= 2.3.0~rc), libost-img-alg2.3 (>= 2.3.0~rc), libost-img2.3 (>= 2.3.0~rc), libost-io2.3 (>= 2.3.0~rc), libost-mol-alg2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libost-seq-alg2.3 (>= 2.3.0~rc), libost-seq2.3 (>= 2.3.0~rc), libpython3.10 (>= 3.10.0), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.14.1) | libqt5gui5-gles (>= 5.14.1), libqt5widgets5 (>= 5.11.0~rc1), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 548 Depends: libc6 (>= 2.14), libgcc-s1 (>= 4.0), libost-base2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-info2.3 (>= 2.3.0~rc), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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version 2.0. size 545670 bytes: control archive=862 bytes. 1064 bytes, 15 lines control 132 bytes, 2 lines md5sums 41 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-io2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1707 Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-regex1.74.0-icu67, libc6 (>= 2.29), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-conop2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-img-alg2.3 (>= 2.3.0~rc), libost-img2.3 (>= 2.3.0~rc), libost-mol-alg2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libost-seq2.3 (>= 2.3.0~rc), libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 11), libtiff5 (>= 4.0.3) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_mol_mm.so.2.3 -> libost_mol_mm.so.2.3.0 -rw-r--r-- root/root 717168 2022-01-19 11:42 ./usr/lib/libost_mol_mm.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-mol-mm2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-mol-mm2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-mol-mm2.3/copyright libost-mol2.3_2.3.0~rc-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 295104 bytes: control archive=794 bytes. 756 bytes, 15 lines control 134 bytes, 2 lines md5sums 43 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libost-mol2.3 Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 856 Depends: libboost-regex1.74.0-icu67, libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_mol.so.2.3 -> libost_mol.so.2.3.0 -rw-r--r-- root/root 855336 2022-01-19 11:42 ./usr/lib/libost_mol.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-mol2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-mol2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-mol2.3/copyright libost-seq-alg-dev_2.3.0~rc-1_amd64.deb --------------------------------------- new Debian package, version 2.0. size 183530 bytes: control archive=1294 bytes. 653 bytes, 15 lines control 1807 bytes, 23 lines md5sums Package: libost-seq-alg-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1410 Depends: libost-seq-alg2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_seq_alg.so.2.3 -> libost_seq_alg.so.2.3.0 -rw-r--r-- root/root 903848 2022-01-19 11:42 ./usr/lib/libost_seq_alg.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-seq-alg2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-seq-alg2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-seq-alg2.3/copyright libost-seq-dev_2.3.0~rc-1_amd64.deb ----------------------------------- new Debian package, version 2.0. size 14414 bytes: control archive=1090 bytes. 643 bytes, 15 lines control 1285 bytes, 17 lines md5sums Package: libost-seq-dev Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 95 Depends: libost-seq2.3 (= 2.3.0~rc-1) Section: libdevel Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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It is targeted at interested method developers in the field of structural bioinformatics. drwxr-xr-x root/root 0 2022-01-19 11:42 ./ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/lib/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/lib/libost_seq.so.2.3 -> libost_seq.so.2.3.0 -rw-r--r-- root/root 183536 2022-01-19 11:42 ./usr/lib/libost_seq.so.2.3.0 drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-seq2.3/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/libost-seq2.3/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/libost-seq2.3/copyright openstructure_2.3.0~rc-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 727030 bytes: control archive=2590 bytes. 43 bytes, 1 lines conffiles 1109 bytes, 14 lines control 3172 bytes, 41 lines md5sums 1059 bytes, 41 lines * postinst #!/bin/sh 930 bytes, 39 lines * prerm #!/bin/sh Package: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 2576 Depends: python3-ost, python3:any, libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libost-base2.3 (>= 2.3.0~rc), libost-conop2.3 (>= 2.3.0~rc), libost-gui2.3 (>= 2.3.0~rc), libost-io2.3 (>= 2.3.0~rc), libost-mol-alg2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libpython3.10 (>= 3.10.0), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.0.2) | libqt5gui5-gles (>= 5.0.2), libqt5widgets5 (>= 5.0.2), libstdc++6 (>= 11) Section: science Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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11:42 ./usr/share/openstructure/textures/glyph_texture.png -rw-r--r-- root/root 13760 2022-01-19 11:42 ./usr/share/openstructure/textures/test_texture.png drwxr-xr-x root/root 0 2022-01-19 11:42 ./var/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./var/cache/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./var/cache/openstructure/ python3-ost_2.3.0~rc-1_amd64.deb -------------------------------- new Debian package, version 2.0. size 3457114 bytes: control archive=4523 bytes. 1527 bytes, 15 lines control 11542 bytes, 123 lines md5sums 259 bytes, 12 lines * postinst #!/bin/sh 408 bytes, 12 lines * prerm #!/bin/sh Package: python3-ost Source: openstructure Version: 2.3.0~rc-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 19795 Depends: python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libboost-filesystem1.74.0 (>= 1.74.0), libboost-python1.74.0 (>= 1.74.0), libc6 (>= 2.32), libgcc-s1 (>= 3.3.1), libopenmm7.6 (>= 7.6.0+dfsg), libost-base2.3 (>= 2.3.0~rc), libost-bindings2.3 (>= 2.3.0~rc), libost-conop2.3 (>= 2.3.0~rc), libost-db2.3 (>= 2.3.0~rc), libost-geom2.3 (>= 2.3.0~rc), libost-gfx2.3 (>= 2.3.0~rc), libost-gui2.3 (>= 2.3.0~rc), libost-img-alg2.3 (>= 2.3.0~rc), libost-img2.3 (>= 2.3.0~rc), libost-info2.3 (>= 2.3.0~rc), libost-io2.3 (>= 2.3.0~rc), libost-mol-alg2.3 (>= 2.3.0~rc), libost-mol-mm2.3 (>= 2.3.0~rc), libost-mol2.3 (>= 2.3.0~rc), libost-seq-alg2.3 (>= 2.3.0~rc), libost-seq2.3 (>= 2.3.0~rc), libpython3.10 (>= 3.10.0), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libstdc++6 (>= 11) Section: python Priority: optional Homepage: https://www.openstructure.org Description: Open-Source Computational Structural Biology Framework - Python 3 package OpenStructure aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. 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root/root 0 2022-01-19 11:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-19 11:42 ./usr/share/doc/python3-ost/ lrwxrwxrwx root/root 0 2022-01-19 11:42 ./usr/share/doc/python3-ost/changelog.Debian.gz -> ../libost-base2.3/changelog.Debian.gz -rw-r--r-- root/root 7470 2022-01-19 11:42 ./usr/share/doc/python3-ost/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 3447 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 211 Job: openstructure_2.3.0~rc-1.dsc Machine Architecture: amd64 Package: openstructure Package-Time: 3664 Source-Version: 2.3.0~rc-1 Space: n/a Status: successful Version: 2.3.0~rc-1 -------------------------------------------------------------------------------- Finished at 2022-01-20T00:15:43Z Build needed 01:01:04, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23077702 Scanning for processes to kill in build PACKAGEBUILD-23077702