paleomix source package in Ubuntu


paleomix ( unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.2.1
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Do not use tox to run full test suite in autopkgtest since it relies
    on full source dir

 -- Andreas Tille <email address hidden>  Mon, 17 Dec 2018 13:35:27 +0100

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Uploaded by:
Debian Med on 2018-12-17
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Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 universe misc
Disco release on 2018-12-17 universe misc


File Size SHA-256 Checksum
paleomix_1.2.13.3-1.dsc 2.1 KiB a97ba70a7ae0d6e0068d6209d6ae4f31b886593c68f3883708ebf1db6860f913
paleomix_1.2.13.3.orig.tar.gz 4.9 MiB 6a49cef2d42350cbc239bd6a23c5eefad79f23bd586a22b85b3a8a04ed5b0d6e
paleomix_1.2.13.3-1.debian.tar.xz 10.9 KiB 9452bf09617105b2a4b6a675a83e043d1c058ccf8a3f8bb890dec85a460e463a

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Binary packages built by this source

paleomix: pipelines and tools for the processing of ancient and modern HTS data

 The PALEOMIX pipelines are a set of pipelines and tools designed to aid
 the rapid processing of High-Throughput Sequencing (HTS) data: The BAM
 pipeline processes de-multiplexed reads from one or more samples,
 through sequence processing and alignment, to generate BAM alignment
 files useful in downstream analyses; the Phylogenetic pipeline carries
 out genotyping and phylogenetic inference on BAM alignment files, either
 produced using the BAM pipeline or generated elsewhere; and the Zonkey
 pipeline carries out a suite of analyses on low coverage equine
 alignments, in order to detect the presence of F1-hybrids in
 archaeological assemblages. In addition, PALEOMIX aids in metagenomic
 analysis of the extracts.
 The pipelines have been designed with ancient DNA (aDNA) in mind, and
 includes several features especially useful for the analyses of ancient
 samples, but can all be for the processing of modern samples, in order
 to ensure consistent data processing.