https://launchpad.net/ubuntu/+source/paleomix/1.3.7-2/+build/24615655 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-023 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:20 UTC 2022 ppc64le Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 6 Nov 09:29:56 ntpdate[1867]: adjust time server 10.211.37.1 offset 0.002379 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24615655 --image-type chroot /home/buildd/filecache-default/e4330c05b9443322bc2e60ef89a014a41584dba0 Creating target for build PACKAGEBUILD-24615655 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24615655 Starting target for build PACKAGEBUILD-24615655 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24615655 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24615655 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24615655 Updating target for build PACKAGEBUILD-24615655 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el Packages [1338 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe ppc64el Packages [14.1 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5791 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el Packages [345 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [142 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el Packages [2033 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [1191 kB] Fetched 25.9 MB in 6s (4041 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 sgml-base Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu cpp-12 debianutils fakeroot g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan8 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libfakeroot libffi8 libgcc-12-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libitm1 libjson-c5 liblsan0 liblz4-1 liblzma5 libp11-kit0 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtsan2 libubsan1 libudev1 libunistring2 linux-libc-dev lto-disabled-list perl perl-base readline-common sgml-base systemd systemd-sysv tzdata usrmerge xz-utils zlib1g 83 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 89.6 MB of archives. After this operation, 48.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcrypt-dev ppc64el 1:4.4.30-1 [143 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main ppc64el libc6-dev ppc64el 2.36-0ubuntu4 [2057 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el libc-dev-bin ppc64el 2.36-0ubuntu4 [20.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcrypt1 ppc64el 1:4.4.30-1 [106 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el linux-libc-dev ppc64el 5.19.0-23.24 [1335 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcc1-0 ppc64el 12.2.0-9ubuntu1 [48.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12-base ppc64el 12.2.0-9ubuntu1 [19.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-s1 ppc64el 12.2.0-9ubuntu1 [34.0 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgomp1 ppc64el 12.2.0-9ubuntu1 [139 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main ppc64el libitm1 ppc64el 12.2.0-9ubuntu1 [32.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main ppc64el libatomic1 ppc64el 12.2.0-9ubuntu1 [10.6 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el libasan8 ppc64el 12.2.0-9ubuntu1 [2450 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblsan0 ppc64el 12.2.0-9ubuntu1 [1082 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtsan2 ppc64el 12.2.0-9ubuntu1 [2565 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el libubsan1 ppc64el 12.2.0-9ubuntu1 [992 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el libquadmath0 ppc64el 12.2.0-9ubuntu1 [155 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el g++-12 ppc64el 12.2.0-9ubuntu1 [11.4 MB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++-12-dev ppc64el 12.2.0-9ubuntu1 [2289 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgcc-12-dev ppc64el 12.2.0-9ubuntu1 [1513 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el gcc-12 ppc64el 12.2.0-9ubuntu1 [19.8 MB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el cpp-12 ppc64el 12.2.0-9ubuntu1 [10.0 MB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libstdc++6 ppc64el 12.2.0-9ubuntu1 [787 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-4.1ubuntu2 [71.9 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libctf0 ppc64el 2.39-8ubuntu2 [109 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libctf-nobfd0 ppc64el 2.39-8ubuntu2 [109 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libbinutils ppc64el 2.39-8ubuntu2 [676 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils-common ppc64el 2.39-8ubuntu2 [223 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils ppc64el 2.39-8ubuntu2 [3110 B] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.39-8ubuntu2 [2426 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el libc6 ppc64el 2.36-0ubuntu4 [3180 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el base-files ppc64el 12.3ubuntu1 [73.5 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el debianutils ppc64el 5.7-0.4 [103 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el bash ppc64el 5.2-1ubuntu2 [952 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el grep ppc64el 3.8-3 [170 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libperl5.36 ppc64el 5.36.0-4ubuntu2 [4854 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl ppc64el 5.36.0-4ubuntu2 [235 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl-base ppc64el 5.36.0-4ubuntu2 [1855 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgdbm6 ppc64el 1.23-3 [40.4 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgdbm-compat4 ppc64el 1.23-3 [6602 B] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libselinux1 ppc64el 3.4-1build1 [96.4 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el base-passwd ppc64el 3.6.1 [51.2 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el usrmerge all 29ubuntu2 [55.8 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el init-system-helpers all 1.65.2 [38.1 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main ppc64el libc-bin ppc64el 2.36-0ubuntu4 [745 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el liblz4-1 ppc64el 1.9.4-1 [104 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el liblzma5 ppc64el 5.2.7-0.1 [125 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libapparmor1 ppc64el 3.0.7-1ubuntu3 [41.1 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcap-ng0 ppc64el 0.8.3-1build1 [16.0 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libaudit1 ppc64el 1:3.0.7-1ubuntu2 [50.7 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libseccomp2 ppc64el 2.5.4-1ubuntu2 [58.7 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main ppc64el systemd-sysv ppc64el 251.4-1ubuntu7 [11.2 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main ppc64el systemd ppc64el 251.4-1ubuntu7 [2999 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsystemd-shared ppc64el 251.4-1ubuntu7 [1883 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsystemd0 ppc64el 251.4-1ubuntu7 [401 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main ppc64el libudev1 ppc64el 251.4-1ubuntu7 [99.4 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.5.4 [1017 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgpg-error0 ppc64el 1.46-1 [85.1 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gpgv ppc64el 2.2.40-1ubuntu1 [171 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libunistring2 ppc64el 1.0-2 [561 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main ppc64el libidn2-0 ppc64el 2.3.3-1build1 [65.9 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libffi8 ppc64el 3.4.4-1 [27.8 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main ppc64el libp11-kit0 ppc64el 0.24.1-1ubuntu2 [257 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libtasn1-6 ppc64el 4.19.0-2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgnutls30 ppc64el 3.7.7-2ubuntu2 [1030 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el apt ppc64el 2.5.4 [1417 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el init ppc64el 1.65.2 [4812 B] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el sgml-base all 1.31 [11.4 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsemanage-common all 3.4-1build1 [9544 B] Get:71 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsemanage2 ppc64el 3.4-1build1 [113 kB] Get:72 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libjson-c5 ppc64el 0.16-2 [38.3 kB] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el readline-common all 8.2-1.1 [55.1 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libreadline8 ppc64el 8.2-1.1 [175 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsqlite3-0 ppc64el 3.39.4-1 [748 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main ppc64el tzdata all 2022f-0ubuntu1 [400 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpng16-16 ppc64el 1.6.38-2 [237 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el xz-utils ppc64el 5.2.7-0.1 [149 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libfakeroot ppc64el 1.30.1-1ubuntu1 [32.9 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el fakeroot ppc64el 1.30.1-1ubuntu1 [62.1 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libassuan0 ppc64el 2.5.5-5 [41.3 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gpg ppc64el 2.2.40-1ubuntu1 [646 kB] Get:83 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gpgconf ppc64el 2.2.40-1ubuntu1 [104 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gpg-agent ppc64el 2.2.40-1ubuntu1 [253 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main ppc64el lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.6 MB in 5s (18.0 MB/s) (Reading database ... 13509 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24615655 ppc64el lunar-proposed -c chroot:build-PACKAGEBUILD-24615655 --arch=ppc64el --dist=lunar-proposed --nolog paleomix_1.3.7-2.dsc Initiating build PACKAGEBUILD-24615655 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:20 UTC 2022 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-023.buildd +==============================================================================+ | paleomix 1.3.7-2 (ppc64el) Sun, 06 Nov 2022 09:30:33 +0000 | +==============================================================================+ Package: paleomix Version: 1.3.7-2 Source Version: 1.3.7-2 Distribution: lunar-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24615655/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/paleomix-g33f8M/resolver-1q6nfn' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paleomix_1.3.7-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/paleomix-g33f8M/paleomix-1.3.7' with '<>' I: NOTICE: Log filtering will replace 'build/paleomix-g33f8M' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest, python3-coloredlogs, python3-configargparse, python3-ruamel.yaml, python3-pysam, python3-setproctitle, default-jre-headless, bowtie2, rsync, examl, picard-tools, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest, python3-coloredlogs, python3-configargparse, python3-ruamel.yaml, python3-pysam, python3-setproctitle, default-jre-headless, bowtie2, rsync, examl, picard-tools, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [488 B] Get:5 copy:/<>/apt_archive ./ Packages [554 B] Fetched 1999 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bowtie2 bsdextrautils ca-certificates-java debhelper debugedit default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dwz examl file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbarclay-java libbrotli1 libbsd0 libcairo2 libcbor0.8 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libevent-core-2.1-7a libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libicu71 libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java liblcms2-2 libldap-2.5-0 liblerc3 liblightcouch-java libllvm15 liblog4j2-java libmagic-mgc libmagic1 libmd0 libmongodb-java libmpdec3 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpicard-java libpipeline1 libpixman-1-0 libpmix2 libpopt0 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libssh-4 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libucx0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db media-types ocl-icd-libopencl1 openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client picard-tools po-debconf python3 python3-attr python3-coloredlogs python3-configargparse python3-distutils python3-humanfriendly python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib python3-setproctitle python3-setuptools python3-tomli python3.10 python3.10-minimal rsync shared-mime-info ubuntu-mono ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc bowtie2-examples dh-make flit python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libasound2-plugins alsa-utils libxz-java libcommons-io-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common jython libdom4j-java libjaxen-java libjdom1-java librhino-java libxalan2-java low-memory-monitor libgoogle-gson-java-doc gvfs libjoptsimple-java-doc libjson-simple-doc liblcms2-utils libcommons-csv-java libconversant-disruptor-java libdisruptor-java libgeronimo-jms-1.1-spec-java libjackson2-dataformat-xml-java libjackson2-dataformat-yaml libjansi-java libjctools-java libjeromq-java libmail-java libwoodstox-java pciutils pcscd lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc subversion python-pyparsing-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support openssh-server python3-braceexpand Recommended packages: librsvg2-common curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libgkl-jni libgl1-amber-dri libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin libldap-common r-base-core publicsuffix libsasl2-modules libltdl-dev libatk-wrapper-java-jni fonts-dejavu-extra xauth libmail-sendmail-perl python3-pygments The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bowtie2 bsdextrautils ca-certificates-java debhelper debugedit default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism dwz examl file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbarclay-java libbrotli1 libbsd0 libcairo2 libcbor0.8 libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libevent-core-2.1-7a libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libicu71 libjbig0 libjoptsimple-java libjpeg-turbo8 libjpeg8 libjson-simple-java liblcms2-2 libldap-2.5-0 liblerc3 liblightcouch-java libllvm15 liblog4j2-java libmagic-mgc libmagic1 libmd0 libmongodb-java libmpdec3 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libopenmpi3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libpicard-java libpipeline1 libpixman-1-0 libpmix2 libpopt0 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libssh-4 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libucx0 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db media-types ocl-icd-libopencl1 openjdk-17-jre openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client picard-tools po-debconf python3 python3-attr python3-coloredlogs python3-configargparse python3-distutils python3-humanfriendly python3-iniconfig python3-lib2to3 python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pysam python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib python3-setproctitle python3-setuptools python3-tomli python3.10 python3.10-minimal rsync sbuild-build-depends-main-dummy shared-mime-info ubuntu-mono ucf x11-common 0 upgraded, 230 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After this operation, 621 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [768 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpython3.10-minimal ppc64el 3.10.8-3 [803 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libexpat1 ppc64el 2.5.0-1 [95.3 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3.10-minimal ppc64el 3.10.8-3 [2210 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-minimal ppc64el 3.10.6-1ubuntu1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmpdec3 ppc64el 2.5.1-2build2 [116 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpython3.10-stdlib ppc64el 3.10.8-3 [1799 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3.10 ppc64el 3.10.8-3 [499 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpython3-stdlib ppc64el 3.10.6-1ubuntu1 [6878 B] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3 ppc64el 3.10.6-1ubuntu1 [22.3 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpopt0 ppc64el 1.19+dfsg-1 [33.1 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el rsync ppc64el 3.2.6-4 [472 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmd0 ppc64el 1.0.4-2 [29.6 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libbsd0 ppc64el 0.11.7-1 [60.0 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libdbus-1-3 ppc64el 1.14.0-2ubuntu3 [232 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el libelf1 ppc64el 0.187-4 [60.8 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfribidi0 ppc64el 1.0.8-2.1ubuntu1 [27.3 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libglib2.0-0 ppc64el 2.74.1-1 [1668 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el libicu71 ppc64el 71.1-3ubuntu1 [10.9 MB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.1 [820 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el shared-mime-info ppc64el 2.2-1 [464 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el ucf all 3.0043 [56.1 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el bsdextrautils ppc64el 2.38-4ubuntu1 [77.3 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic-mgc ppc64el 1:5.41-4 [257 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic1 ppc64el 1:5.41-4 [103 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main ppc64el file ppc64el 1:5.41-4 [22.6 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext-base ppc64el 0.21-8 [42.0 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el groff-base ppc64el 1.22.4-8build1 [1031 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcbor0.8 ppc64el 0.8.0-2ubuntu1 [26.6 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdrm-common all 2.4.113-2 [5324 B] Get:34 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdrm2 ppc64el 2.4.113-2 [46.7 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libedit2 ppc64el 3.1-20221030-1 [122 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libfido2-1 ppc64el 1.12.0-1 [110 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libnghttp2-14 ppc64el 1.50.0-1 [88.8 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main ppc64el libnuma1 ppc64el 2.0.14-3ubuntu2 [26.6 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpipeline1 ppc64el 1.5.6-3 [25.9 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpsl5 ppc64el 0.21.0-1.2build2 [60.3 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxau6 ppc64el 1:1.0.9-1build5 [8028 B] Get:42 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxdmcp6 ppc64el 1:1.1.3-0ubuntu5 [12.3 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb1 ppc64el 1.15-1 [55.5 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main ppc64el libx11-data all 2:1.8.1-2 [118 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main ppc64el libx11-6 ppc64el 2:1.8.1-2 [740 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxext6 ppc64el 2:1.3.4-1build1 [40.0 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el man-db ppc64el 2.11.0-1 [1220 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el openssh-client ppc64el 1:9.0p1-1ubuntu8 [1027 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main ppc64el hicolor-icon-theme all 0.17-2 [9976 B] Get:50 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgdk-pixbuf2.0-common all 2.42.9+dfsg-1 [5606 B] Get:51 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg-turbo8 ppc64el 2.1.2-0ubuntu1 [214 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjpeg8 ppc64el 8c-2ubuntu10 [2266 B] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libdeflate0 ppc64el 1.14-1 [53.8 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjbig0 ppc64el 2.1-3.1build3 [33.6 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblerc3 ppc64el 3.0+ds-1ubuntu1 [194 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main ppc64el libwebp7 ppc64el 1.2.2-2 [303 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtiff5 ppc64el 4.4.0-4ubuntu3 [244 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.9+dfsg-1 [178 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main ppc64el gtk-update-icon-cache ppc64el 3.24.34-3ubuntu2 [37.8 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main ppc64el humanity-icon-theme all 0.6.16 [1282 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main ppc64el ubuntu-mono all 20.10-0ubuntu2 [153 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main ppc64el adwaita-icon-theme all 41.0-1ubuntu1 [3444 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main ppc64el at-spi2-common all 2.46.0-3 [4616 B] Get:64 http://ftpmaster.internal/ubuntu lunar/main ppc64el m4 ppc64el 1.4.19-1 [275 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main ppc64el autoconf all 2.71-2 [338 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main ppc64el autopoint all 0.21-8 [421 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main ppc64el ca-certificates-java all 20220719 [12.4 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtool all 2.4.7-4 [166 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:75 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:77 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdw1 ppc64el 0.187-4 [280 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el dwz ppc64el 0.14+20220924-2 [139 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext ppc64el 0.21-8 [970 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:83 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el debhelper all 13.10.1ubuntu1 [924 kB] Get:84 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el java-common all 0.73 [6320 B] Get:85 http://ftpmaster.internal/ubuntu lunar/main ppc64el libavahi-common-data ppc64el 0.8-6ubuntu1 [24.0 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main ppc64el libavahi-common3 ppc64el 0.8-6ubuntu1 [25.6 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main ppc64el libavahi-client3 ppc64el 0.8-6ubuntu1 [30.7 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcups2 ppc64el 2.4.2-1ubuntu2 [333 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main ppc64el liblcms2-2 ppc64el 2.13.1-1 [239 kB] Get:90 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libbrotli1 ppc64el 1.0.9-2build7 [369 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfreetype6 ppc64el 2.12.1+dfsg-3 [520 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main ppc64el fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/main ppc64el fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfontconfig1 ppc64el 2.13.1-4.4ubuntu1 [180 kB] Get:95 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libnspr4 ppc64el 2:4.35-1 [132 kB] Get:96 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libnss3 ppc64el 2:3.83-1 [1708 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main ppc64el libasound2-data all 1.2.7.2-1 [19.3 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/main ppc64el libasound2 ppc64el 1.2.7.2-1 [478 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgraphite2-3 ppc64el 1.3.14-1build2 [85.9 kB] Get:100 http://ftpmaster.internal/ubuntu lunar/main ppc64el libharfbuzz0b ppc64el 2.7.4-1ubuntu5 [442 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpcsclite1 ppc64el 1.9.9-1 [26.8 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main ppc64el openjdk-17-jre-headless ppc64el 17.0.4+8-1 [46.6 MB] Get:103 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el default-jre-headless ppc64el 2:1.17-73 [2780 B] Get:104 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] Get:105 http://ftpmaster.internal/ubuntu lunar/main ppc64el libatk1.0-0 ppc64el 2.46.0-3 [55.5 kB] Get:106 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpixman-1-0 ppc64el 0.40.0-1build4 [297 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] Get:108 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] Get:109 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] Get:110 http://ftpmaster.internal/ubuntu lunar/main ppc64el libcairo2 ppc64el 1.16.0-5ubuntu2 [787 kB] Get:111 http://ftpmaster.internal/ubuntu lunar/main ppc64el fontconfig ppc64el 2.13.1-4.4ubuntu1 [184 kB] Get:112 http://ftpmaster.internal/ubuntu lunar/main ppc64el libthai-data all 0.1.29-1build1 [162 kB] Get:113 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdatrie1 ppc64el 0.2.13-2 [22.6 kB] Get:114 http://ftpmaster.internal/ubuntu lunar/main ppc64el libthai0 ppc64el 0.1.29-1build1 [21.6 kB] Get:115 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpango-1.0-0 ppc64el 1.50.10+ds-1 [262 kB] Get:116 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpangoft2-1.0-0 ppc64el 1.50.10+ds-1 [57.2 kB] Get:117 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpangocairo-1.0-0 ppc64el 1.50.10+ds-1 [38.2 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcomposite1 ppc64el 1:0.4.5-1build2 [7400 B] Get:119 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libxfixes3 ppc64el 1:6.0.0-2 [11.6 kB] Get:120 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcursor1 ppc64el 1:1.2.1-1 [26.9 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxdamage1 ppc64el 1:1.1.5-2build2 [7400 B] Get:122 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxi6 ppc64el 2:1.8-1build1 [38.1 kB] Get:123 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxinerama1 ppc64el 2:1.1.4-3 [7658 B] Get:124 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxrandr2 ppc64el 2:1.5.2-2 [22.7 kB] Get:125 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgtk2.0-0 ppc64el 2.24.33-2ubuntu2 [2201 kB] Get:126 http://ftpmaster.internal/ubuntu lunar/main ppc64el libglvnd0 ppc64el 1.5.0-1 [73.3 kB] Get:127 http://ftpmaster.internal/ubuntu lunar/main ppc64el libglapi-mesa ppc64el 22.2.1-1ubuntu1 [34.5 kB] Get:128 http://ftpmaster.internal/ubuntu lunar/main ppc64el libx11-xcb1 ppc64el 2:1.8.1-2 [7834 B] Get:129 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-dri2-0 ppc64el 1.15-1 [7444 B] Get:130 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-dri3-0 ppc64el 1.15-1 [7392 B] Get:131 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-glx0 ppc64el 1.15-1 [26.2 kB] Get:132 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-present0 ppc64el 1.15-1 [5814 B] Get:133 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-sync1 ppc64el 1.15-1 [9720 B] Get:134 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxcb-xfixes0 ppc64el 1.15-1 [10.6 kB] Get:135 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxshmfence1 ppc64el 1.3-1build4 [5566 B] Get:136 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build3 [11.8 kB] Get:137 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdrm-amdgpu1 ppc64el 2.4.113-2 [23.8 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdrm-nouveau2 ppc64el 2.4.113-2 [20.5 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdrm-radeon1 ppc64el 2.4.113-2 [25.8 kB] Get:140 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libllvm15 ppc64el 1:15.0.4-1 [26.7 MB] Get:141 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:142 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsensors5 ppc64el 1:3.6.0-7ubuntu1 [32.3 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgl1-mesa-dri ppc64el 22.2.1-1ubuntu1 [6092 kB] Get:144 http://ftpmaster.internal/ubuntu lunar/main ppc64el libglx-mesa0 ppc64el 22.2.1-1ubuntu1 [175 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/main ppc64el libglx0 ppc64el 1.5.0-1 [42.1 kB] Get:146 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgl1 ppc64el 1.5.0-1 [108 kB] Get:147 http://ftpmaster.internal/ubuntu lunar/main ppc64el libgif7 ppc64el 5.2.1-2.5 [39.6 kB] Get:148 http://ftpmaster.internal/ubuntu lunar/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:149 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxtst6 ppc64el 2:1.2.3-1.1 [15.4 kB] Get:150 http://ftpmaster.internal/ubuntu lunar/main ppc64el openjdk-17-jre ppc64el 17.0.4+8-1 [194 kB] Get:151 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el default-jre ppc64el 2:1.17-73 [910 B] Get:152 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-lib2to3 all 3.10.8-1 [77.5 kB] Get:153 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-distutils all 3.10.8-1 [139 kB] Get:154 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el dh-python all 5.20221008 [106 kB] Get:155 http://ftpmaster.internal/ubuntu lunar/main ppc64el libevent-core-2.1-7a ppc64el 2.1.12-stable-5ubuntu1 [106 kB] Get:156 http://ftpmaster.internal/ubuntu lunar/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.12-stable-5ubuntu1 [7830 B] Get:157 http://ftpmaster.internal/ubuntu lunar/main ppc64el libnl-3-200 ppc64el 3.7.0-0.2 [71.5 kB] Get:158 http://ftpmaster.internal/ubuntu lunar/main ppc64el libnl-route-3-200 ppc64el 3.7.0-0.2 [203 kB] Get:159 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libibverbs1 ppc64el 43.0-1 [71.3 kB] Get:160 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el ibverbs-providers ppc64el 43.0-1 [397 kB] Get:161 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el librdmacm1 ppc64el 43.0-1 [78.6 kB] Get:162 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libfabric1 ppc64el 1.11.0-3 [573 kB] Get:163 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhwloc15 ppc64el 2.8.0-1 [205 kB] Get:164 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg-6ubuntu2 [22.8 kB] Get:165 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg-6ubuntu2 [69.2 kB] Get:166 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libldap-2.5-0 ppc64el 2.5.13+dfsg-1ubuntu2 [217 kB] Get:167 http://ftpmaster.internal/ubuntu lunar/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:168 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libssh-4 ppc64el 0.10.4-2 [235 kB] Get:169 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcurl3-gnutls ppc64el 7.86.0-1 [358 kB] Get:170 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libpciaccess0 ppc64el 0.17-1 [20.5 kB] Get:171 http://ftpmaster.internal/ubuntu lunar/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu1 [11.7 kB] Get:172 http://ftpmaster.internal/ubuntu lunar/universe ppc64el ocl-icd-libopencl1 ppc64el 2.2.14-3 [43.3 kB] Get:173 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhwloc-plugins ppc64el 2.8.0-1 [17.5 kB] Get:174 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libpmix2 ppc64el 4.1.2-2ubuntu2 [680 kB] Get:175 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libucx0 ppc64el 1.13.0-1 [967 kB] Get:176 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libopenmpi3 ppc64el 4.1.4-2ubuntu2 [2669 kB] Get:177 http://ftpmaster.internal/ubuntu lunar/universe ppc64el openmpi-common all 4.1.4-2ubuntu2 [163 kB] Get:178 http://ftpmaster.internal/ubuntu lunar/universe ppc64el openmpi-bin ppc64el 4.1.4-2ubuntu2 [119 kB] Get:179 http://ftpmaster.internal/ubuntu lunar/universe ppc64el examl ppc64el 3.0.22-3 [869 kB] Get:180 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libapache-pom-java all 25-2 [5006 B] Get:181 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-parent-java all 43-1 [10.8 kB] Get:182 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-lang3-java all 3.12.0-2 [532 kB] Get:183 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libfreemarker-java all 2.3.31-1 [1505 kB] Get:184 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libgoogle-gson-java all 2.9.1-1 [233 kB] Get:185 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libjoptsimple-java all 5.0.4-4 [73.1 kB] Get:186 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-codec-java all 1.15-1 [291 kB] Get:187 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-logging-java all 1.2-3 [59.9 kB] Get:188 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhttpcore-java all 4.4.15-1 [606 kB] Get:189 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhttpclient-java all 4.5.13-3 [1226 kB] Get:190 http://ftpmaster.internal/ubuntu lunar/universe ppc64el liblightcouch-java all 0.0.6-1.1 [65.2 kB] Get:191 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libmongodb-java all 3.6.3-2 [1899 kB] Get:192 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libslf4j-java all 1.7.32-1 [141 kB] Get:193 http://ftpmaster.internal/ubuntu lunar/universe ppc64el liblog4j2-java all 2.17.2-1 [2182 kB] Get:194 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libbarclay-java all 4.0.2+dfsg-1 [100 kB] Get:195 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-compress-java all 1.21-1 [575 kB] Get:196 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-io-java all 2.11.0-2 [297 kB] Get:197 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-jexl2-java all 2.1.1-6 [250 kB] Get:198 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libcommons-math3-java all 3.6.1-3 [2016 kB] Get:199 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libgatk-native-bindings-java all 1.0.0-2.1 [7380 B] Get:200 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libjson-simple-java all 2.3.0-1 [61.0 kB] Get:201 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libngs-sdk2 ppc64el 2.11.2-4 [53.3 kB] Get:202 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libngs-sdk-dev ppc64el 2.11.2-4 [104 kB] Get:203 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libngs-java ppc64el 2.11.2-4 [75.9 kB] Get:204 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsnappy1v5 ppc64el 1.1.9-2 [29.9 kB] Get:205 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libsnappy-jni ppc64el 1.1.8.3-1 [6688 B] Get:206 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libsnappy-java all 1.1.8.3-1 [93.9 kB] Get:207 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhtsjdk-java all 2.24.1+dfsg-3 [1643 kB] Get:208 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libgkl-java all 0.8.10+dfsg-3 [25.1 kB] Get:209 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libhtscodecs2 ppc64el 1.3.0-4 [103 kB] Get:210 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libhts3 ppc64el 1.13+ds-2build2 [503 kB] Get:211 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libpicard-java all 2.27.2+dfsg-2 [1676 kB] Get:212 http://ftpmaster.internal/ubuntu lunar/universe ppc64el picard-tools all 2.27.2+dfsg-2 [308 kB] Get:213 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-attr all 22.1.0-1 [48.5 kB] Get:214 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el python3-humanfriendly all 10.0-3 [70.4 kB] Get:215 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] Get:216 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-configargparse all 1.5.3-1 [26.9 kB] Get:217 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] Get:218 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-more-itertools all 8.10.0-2 [47.9 kB] Get:219 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-pyparsing all 3.0.7-3 [82.1 kB] Get:220 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-packaging all 21.3-1.1 [30.6 kB] Get:221 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-pluggy all 1.0.0+repack-1 [15.1 kB] Get:222 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-py all 1.11.0-1 [73.2 kB] Get:223 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-pysam ppc64el 0.17.0+ds-2build1 [2095 kB] Get:224 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-tomli all 2.0.1-1 [16.6 kB] Get:225 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-pytest all 7.1.2-2ubuntu1 [219 kB] Get:226 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-ruamel.yaml.clib ppc64el 0.2.6-1build1 [153 kB] Get:227 http://ftpmaster.internal/ubuntu lunar/universe ppc64el python3-ruamel.yaml all 0.17.16-1 [86.3 kB] Get:228 http://ftpmaster.internal/ubuntu lunar/main ppc64el python3-setuptools all 59.6.0-1.2 [339 kB] Get:229 http://ftpmaster.internal/ubuntu lunar/universe ppc64el bowtie2 ppc64el 2.4.5-1 [1392 kB] Get:230 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el python3-setproctitle ppc64el 1.3.1-1 [18.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 157 MB in 39s (4029 kB/s) Selecting previously unselected package libpython3.10-minimal:ppc64el. (Reading database ... 15478 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.8-3_ppc64el.deb ... Unpacking libpython3.10-minimal:ppc64el (3.10.8-3) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.8-3_ppc64el.deb ... Unpacking python3.10-minimal (3.10.8-3) ... Setting up libpython3.10-minimal:ppc64el (3.10.8-3) ... Setting up libexpat1:ppc64el (2.5.0-1) ... Setting up python3.10-minimal (3.10.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 15781 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:ppc64el. Preparing to unpack .../2-libmpdec3_2.5.1-2build2_ppc64el.deb ... Unpacking libmpdec3:ppc64el (2.5.1-2build2) ... Selecting previously unselected package libpython3.10-stdlib:ppc64el. Preparing to unpack .../3-libpython3.10-stdlib_3.10.8-3_ppc64el.deb ... Unpacking libpython3.10-stdlib:ppc64el (3.10.8-3) ... Selecting previously unselected package python3.10. Preparing to unpack .../4-python3.10_3.10.8-3_ppc64el.deb ... Unpacking python3.10 (3.10.8-3) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../5-libpython3-stdlib_3.10.6-1ubuntu1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.10.6-1ubuntu1) ... Setting up python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 16182 files and directories currently installed.) Preparing to unpack .../000-python3_3.10.6-1ubuntu1_ppc64el.deb ... Unpacking python3 (3.10.6-1ubuntu1) ... Selecting previously unselected package libpopt0:ppc64el. Preparing to unpack .../001-libpopt0_1.19+dfsg-1_ppc64el.deb ... Unpacking libpopt0:ppc64el (1.19+dfsg-1) ... Selecting previously unselected package rsync. Preparing to unpack .../002-rsync_3.2.6-4_ppc64el.deb ... Unpacking rsync (3.2.6-4) ... Selecting previously unselected package libmd0:ppc64el. Preparing to unpack .../003-libmd0_1.0.4-2_ppc64el.deb ... Unpacking libmd0:ppc64el (1.0.4-2) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../004-libbsd0_0.11.7-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.11.7-1) ... Selecting previously unselected package libdbus-1-3:ppc64el. Preparing to unpack .../005-libdbus-1-3_1.14.0-2ubuntu3_ppc64el.deb ... Unpacking libdbus-1-3:ppc64el (1.14.0-2ubuntu3) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../006-libelf1_0.187-4_ppc64el.deb ... Unpacking libelf1:ppc64el (0.187-4) ... Selecting previously unselected package libfribidi0:ppc64el. Preparing to unpack .../007-libfribidi0_1.0.8-2.1ubuntu1_ppc64el.deb ... Unpacking libfribidi0:ppc64el (1.0.8-2.1ubuntu1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../008-libglib2.0-0_2.74.1-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.74.1-1) ... Selecting previously unselected package libicu71:ppc64el. Preparing to unpack .../009-libicu71_71.1-3ubuntu1_ppc64el.deb ... Unpacking libicu71:ppc64el (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../010-libxml2_2.9.14+dfsg-1.1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../011-python3-pkg-resources_59.6.0-1.2_all.deb ... Unpacking python3-pkg-resources (59.6.0-1.2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../012-shared-mime-info_2.2-1_ppc64el.deb ... Unpacking shared-mime-info (2.2-1) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.38-4ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.41-4_ppc64el.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../016-libmagic1_1%3a5.41-4_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.41-4_ppc64el.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../018-gettext-base_0.21-8_ppc64el.deb ... Unpacking gettext-base (0.21-8) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../019-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../020-groff-base_1.22.4-8build1_ppc64el.deb ... Unpacking groff-base (1.22.4-8build1) ... Selecting previously unselected package libcbor0.8:ppc64el. Preparing to unpack .../021-libcbor0.8_0.8.0-2ubuntu1_ppc64el.deb ... Unpacking libcbor0.8:ppc64el (0.8.0-2ubuntu1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../022-libdrm-common_2.4.113-2_all.deb ... Unpacking libdrm-common (2.4.113-2) ... Selecting previously unselected package libdrm2:ppc64el. Preparing to unpack .../023-libdrm2_2.4.113-2_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.113-2) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../024-libedit2_3.1-20221030-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20221030-1) ... Selecting previously unselected package libfido2-1:ppc64el. Preparing to unpack .../025-libfido2-1_1.12.0-1_ppc64el.deb ... Unpacking libfido2-1:ppc64el (1.12.0-1) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../026-libnghttp2-14_1.50.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.50.0-1) ... Selecting previously unselected package libnuma1:ppc64el. Preparing to unpack .../027-libnuma1_2.0.14-3ubuntu2_ppc64el.deb ... Unpacking libnuma1:ppc64el (2.0.14-3ubuntu2) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../028-libpipeline1_1.5.6-3_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.6-3) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../029-libpsl5_0.21.0-1.2build2_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.0-1.2build2) ... Selecting previously unselected package libxau6:ppc64el. Preparing to unpack .../030-libxau6_1%3a1.0.9-1build5_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../031-libxdmcp6_1%3a1.1.3-0ubuntu5_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../032-libxcb1_1.15-1_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../033-libx11-data_2%3a1.8.1-2_all.deb ... Unpacking libx11-data (2:1.8.1-2) ... Selecting previously unselected package libx11-6:ppc64el. Preparing to unpack .../034-libx11-6_2%3a1.8.1-2_ppc64el.deb ... Unpacking libx11-6:ppc64el (2:1.8.1-2) ... Selecting previously unselected package libxext6:ppc64el. Preparing to unpack .../035-libxext6_2%3a1.3.4-1build1_ppc64el.deb ... Unpacking libxext6:ppc64el (2:1.3.4-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../036-man-db_2.11.0-1_ppc64el.deb ... Unpacking man-db (2.11.0-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../037-openssh-client_1%3a9.0p1-1ubuntu8_ppc64el.deb ... Unpacking openssh-client (1:9.0p1-1ubuntu8) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../038-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../039-libgdk-pixbuf2.0-common_2.42.9+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.9+dfsg-1) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. 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Setting up libslf4j-java (1.7.32-1) ... Setting up libxau6:ppc64el (1:1.0.9-1build5) ... Setting up libpsl5:ppc64el (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libgatk-native-bindings-java (1.0.0-2.1) ... Setting up java-common (0.73) ... Setting up libdatrie1:ppc64el (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libevent-core-2.1-7a:ppc64el (2.1.12-stable-5ubuntu1) ... Setting up libglib2.0-0:ppc64el (2.74.1-1) ... No schema files found: doing nothing. Setting up libglvnd0:ppc64el (1.5.0-1) ... Setting up libgoogle-gson-java (2.9.1-1) ... Setting up libcbor0.8:ppc64el (0.8.0-2ubuntu1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build7) ... Setting up libgdk-pixbuf2.0-common (2.42.9+dfsg-1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7ubuntu1) ... Setting up libnghttp2-14:ppc64el (1.50.0-1) ... Setting up libmagic1:ppc64el (1:5.41-4) ... Setting up libngs-sdk2:ppc64el (2.11.2-4) ... Setting up libdeflate0:ppc64el (1.14-1) ... Setting up gettext-base (0.21-8) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libjson-simple-java (2.3.0-1) ... Setting up libjbig0:ppc64el (2.1-3.1build3) ... Setting up libsnappy1v5:ppc64el (1.1.9-2) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg-6ubuntu2) ... Setting up libasound2-data (1.2.7.2-1) ... Setting up autotools-dev (20220109.1) ... Setting up libfreetype6:ppc64el (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.8.1-2) ... Setting up libnspr4:ppc64el (2:4.35-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up liblerc3:ppc64el (3.0+ds-1ubuntu1) ... Setting up libapache-pom-java (25-2) ... Setting up libavahi-common-data:ppc64el (0.8-6ubuntu1) ... Setting up libdbus-1-3:ppc64el (1.14.0-2ubuntu3) ... Setting up libfribidi0:ppc64el (1.0.8-2.1ubuntu1) ... Setting up libhwloc15:ppc64el (2.8.0-1) ... Setting up autopoint (0.21-8) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libngs-sdk-dev:ppc64el (2.11.2-4) ... Setting up libpcsclite1:ppc64el (1.9.9-1) ... Setting up ucf (3.0043) ... Setting up libsensors5:ppc64el (1:3.6.0-7ubuntu1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libjpeg-turbo8:ppc64el (2.1.2-0ubuntu1) ... Setting up libglapi-mesa:ppc64el (22.2.1-1ubuntu1) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:ppc64el (0.10.4-2) ... Setting up autoconf (2.71-2) ... Setting up libwebp7:ppc64el (1.2.2-2) ... Setting up libgif7:ppc64el (5.2.1-2.5) ... Setting up libnuma1:ppc64el (2.0.14-3ubuntu2) ... Setting up libmd0:ppc64el (1.0.4-2) ... Setting up libfreemarker-java (2.3.31-1) ... Setting up ocl-icd-libopencl1:ppc64el (2.2.14-3) ... Setting up libxshmfence1:ppc64el (1.3-1build4) ... Setting up at-spi2-common (2.46.0-3) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libasound2:ppc64el (1.2.7.2-1) ... Setting up libnl-3-200:ppc64el (3.7.0-0.2) ... Setting up libmpdec3:ppc64el (2.5.1-2build2) ... Setting up openmpi-common (4.1.4-2ubuntu2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:ppc64el (2.7.4-1ubuntu5) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... Setting up libatk1.0-0:ppc64el (2.46.0-3) ... Setting up libhttpcore-java (4.4.15-1) ... Setting up libjoptsimple-java (5.0.4-4) ... Setting up ca-certificates-java (20220719) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EC-ACC.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem done. Setting up libngs-java:ppc64el (2.11.2-4) ... Setting up libfido2-1:ppc64el (1.12.0-1) ... Setting up libbsd0:ppc64el (0.11.7-1) ... Setting up libdrm-common (2.4.113-2) ... Setting up libelf1:ppc64el (0.187-4) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.1) ... Setting up libpopt0:ppc64el (1.19+dfsg-1) ... Setting up libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-5ubuntu1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:ppc64el (0.187-4) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu5) ... Setting up libxcb1:ppc64el (1.15-1) ... Setting up gettext (0.21-8) ... Setting up libxcb-xfixes0:ppc64el (1.15-1) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:ppc64el (1.15-1) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libxcb-glx0:ppc64el (1.15-1) ... Setting up libedit2:ppc64el (3.1-20221030-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:ppc64el (0.8-6ubuntu1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libnss3:ppc64el (2:3.83-1) ... Setting up libxcb-shm0:ppc64el (1.15-1) ... Setting up libldap-2.5-0:ppc64el (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:ppc64el (3.7.0-0.2) ... Setting up libxcb-present0:ppc64el (1.15-1) ... Setting up libpython3.10-stdlib:ppc64el (3.10.8-3) ... Setting up dh-autoreconf (20) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:ppc64el (0.1.29-1build1) ... Setting up libxcb-sync1:ppc64el (1.15-1) ... Setting up shared-mime-info (2.2-1) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up libxcb-dri2-0:ppc64el (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libdrm2:ppc64el (2.4.113-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-8build1) ... Setting up libllvm15:ppc64el (1:15.0.4-1) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:ppc64el (2:1.8.1-2) ... Setting up libtiff5:ppc64el (4.4.0-4ubuntu3) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libxcomposite1:ppc64el (1:0.4.5-1build2) ... Setting up libavahi-client3:ppc64el (0.8-6ubuntu1) ... Setting up rsync (3.2.6-4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:ppc64el (3.10.6-1ubuntu1) ... Setting up libdrm-amdgpu1:ppc64el (2.4.113-2) ... Setting up libxcb-dri3-0:ppc64el (1.15-1) ... Setting up libx11-xcb1:ppc64el (2:1.8.1-2) ... Setting up libibverbs1:ppc64el (43.0-1) ... Setting up libdrm-nouveau2:ppc64el (2.4.113-2) ... Setting up libxdamage1:ppc64el (1:1.1.5-2build2) ... Setting up python3.10 (3.10.8-3) ... Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... Setting up libcommons-compress-java (1.21-1) ... Setting up ibverbs-providers:ppc64el (43.0-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:ppc64el (2.4.113-2) ... Setting up openssh-client (1:9.0p1-1ubuntu8) ... update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libgl1-mesa-dri:ppc64el (22.2.1-1ubuntu1) ... Setting up libxext6:ppc64el (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:ppc64el (7.86.0-1) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up man-db (2.11.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libxxf86vm1:ppc64el (1:1.1.4-1build3) ... Setting up bowtie2 (2.4.5-1) ... Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ... Setting up python3-pyparsing (3.0.7-3) ... Setting up python3-humanfriendly (10.0-3) ... Setting up libxfixes3:ppc64el (1:6.0.0-2) ... Setting up libxinerama1:ppc64el (2:1.1.4-3) ... Setting up python3-setproctitle:ppc64el (1.3.1-1) ... Setting up libxrandr2:ppc64el (2:1.5.2-2) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up libcups2:ppc64el (2.4.2-1ubuntu2) ... Setting up libhttpclient-java (4.5.13-3) ... Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.9+dfsg-1) ... Setting up liblightcouch-java (0.0.6-1.1) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up libhtsjdk-java (2.24.1+dfsg-3) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20221008) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up librdmacm1:ppc64el (43.0-1) ... Setting up python3-attr (22.1.0-1) ... Setting up gtk-update-icon-cache (3.24.34-3ubuntu2) ... Setting up libucx0:ppc64el (1.13.0-1) ... Setting up libhts3:ppc64el (1.13+ds-2build2) ... Setting up libglx-mesa0:ppc64el (22.2.1-1ubuntu1) ... Setting up python3-pysam (0.17.0+ds-2build1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up libxi6:ppc64el (2:1.8-1build1) ... Setting up libglx0:ppc64el (1.5.0-1) ... Setting up python3-tomli (2.0.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up libxtst6:ppc64el (2:1.2.3-1.1) ... Setting up liblog4j2-java (2.17.2-1) ... Setting up libxcursor1:ppc64el (1:1.2.1-1) ... Setting up python3-ruamel.yaml.clib:ppc64el (0.2.6-1build1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up libhwloc-plugins:ppc64el (2.8.0-1) ... Setting up python3-packaging (21.3-1.1) ... Setting up libgl1:ppc64el (1.5.0-1) ... Setting up python3-ruamel.yaml (0.17.16-1) ... Setting up libbarclay-java (4.0.2+dfsg-1) ... Setting up libfabric1:ppc64el (1.11.0-3) ... Setting up libpmix2:ppc64el (4.1.2-2ubuntu2) ... Setting up libgkl-java (0.8.10+dfsg-3) ... Setting up python3-pytest (7.1.2-2ubuntu1) ... Setting up libopenmpi3:ppc64el (4.1.4-2ubuntu2) ... Setting up libpicard-java (2.27.2+dfsg-2) ... Setting up openmpi-bin (4.1.4-2ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up examl (3.0.22-3) ... Setting up adwaita-icon-theme (41.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up humanity-icon-theme (0.6.16) ... Setting up ubuntu-mono (20.10-0ubuntu2) ... Processing triggers for systemd (251.4-1ubuntu7) ... Processing triggers for sgml-base (1.31) ... Setting up libfontconfig1:ppc64el (2.13.1-4.4ubuntu1) ... Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Processing triggers for libc-bin (2.36-0ubuntu4) ... Setting up libpango-1.0-0:ppc64el (1.50.10+ds-1) ... Setting up libcairo2:ppc64el (1.16.0-5ubuntu2) ... Setting up openjdk-17-jre-headless:ppc64el (17.0.4+8-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpangoft2-1.0-0:ppc64el (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:ppc64el (1.50.10+ds-1) ... Setting up default-jre-headless (2:1.17-73) ... Setting up libgtk2.0-0:ppc64el (2.24.33-2ubuntu2) ... Setting up openjdk-17-jre:ppc64el (17.0.4+8-1) ... Setting up default-jre (2:1.17-73) ... Setting up picard-tools (2.27.2+dfsg-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:08:20 UTC 2022 ppc64el (ppc64le) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 adwaita-icon-theme_41.0-1ubuntu1 apt_2.5.4 at-spi2-common_2.46.0-3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-powerpc64le-linux-gnu_2.39-8ubuntu2 bowtie2_2.4.5-1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 ca-certificates-java_20220719 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 default-jre_2:1.17-73 default-jre-headless_2:1.17-73 dh-autoreconf_20 dh-python_5.20221008 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.5-2ubuntu2 examl_3.0.22-3 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 fontconfig_2.13.1-4.4ubuntu1 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-8build1 gtk-update-icon-cache_3.24.34-3ubuntu2 gzip_1.12-1ubuntu1 hicolor-icon-theme_0.17-2 hostname_3.23ubuntu2 humanity-icon-theme_0.6.16 ibverbs-providers_43.0-1 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 java-common_0.73 libacl1_2.3.1-1 libapache-pom-java_25-2 libapparmor1_3.0.7-1ubuntu3 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libasound2_1.2.7.2-1 libasound2-data_1.2.7.2-1 libassuan0_2.5.5-5 libatk1.0-0_2.46.0-3 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libavahi-client3_0.8-6ubuntu1 libavahi-common-data_0.8-6ubuntu1 libavahi-common3_0.8-6ubuntu1 libbarclay-java_4.0.2+dfsg-1 libbinutils_2.39-8ubuntu2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcbor0.8_0.8.0-2ubuntu1 libcc1-0_12.2.0-9ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcommons-codec-java_1.15-1 libcommons-compress-java_1.21-1 libcommons-io-java_2.11.0-2 libcommons-jexl2-java_2.1.1-6 libcommons-lang3-java_3.12.0-2 libcommons-logging-java_1.2-3 libcommons-math3-java_3.6.1-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.30-1 libcrypt1_1:4.4.30-1 libcryptsetup12_2:2.5.0-2ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcups2_2.4.2-1ubuntu2 libcurl3-gnutls_7.86.0-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.10 libdbus-1-3_1.14.0-2ubuntu3 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 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policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.10.6-1ubuntu1 python3-attr_22.1.0-1 python3-coloredlogs_15.0.1-1 python3-configargparse_1.5.3-1 python3-distutils_3.10.8-1 python3-humanfriendly_10.0-3 python3-iniconfig_1.1.1-2 python3-lib2to3_3.10.8-1 python3-minimal_3.10.6-1ubuntu1 python3-more-itertools_8.10.0-2 python3-packaging_21.3-1.1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0+repack-1 python3-py_1.11.0-1 python3-pyparsing_3.0.7-3 python3-pysam_0.17.0+ds-2build1 python3-pytest_7.1.2-2ubuntu1 python3-ruamel.yaml_0.17.16-1 python3-ruamel.yaml.clib_0.2.6-1build1 python3-setproctitle_1.3.1-1 python3-setuptools_59.6.0-1.2 python3-tomli_2.0.1-1 python3.10_3.10.8-3 python3.10-minimal_3.10.8-3 readline-common_8.2-1.1 rpcsvc-proto_1.4.2-0ubuntu6 rsync_3.2.6-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.31 shared-mime-info_2.2-1 systemd_251.4-1ubuntu7 systemd-sysv_251.4-1ubuntu7 sysvinit-utils_3.04-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022f-0ubuntu1 ubuntu-keyring_2021.03.26 ubuntu-mono_20.10-0ubuntu2 ucf_3.0043 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 xz-utils_5.2.7-0.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: paleomix Binary: paleomix Architecture: any Version: 1.3.7-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://geogenetics.ku.dk/publications/paleomix Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/paleomix Vcs-Git: https://salsa.debian.org/med-team/paleomix.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest , python3-coloredlogs , python3-configargparse , python3-ruamel.yaml , python3-pysam , python3-setproctitle , default-jre-headless , bowtie2, rsync, examl, picard-tools Package-List: paleomix deb science optional arch=any Checksums-Sha1: 0143623f4bc3c6ffe5a3ff3332099cad28788052 1137101 paleomix_1.3.7.orig.tar.gz de18adbd332db60a2f82c096b11c1ec60282d584 10492 paleomix_1.3.7-2.debian.tar.xz Checksums-Sha256: 63c03e8b0d9938714836862c3c98763aefd18b4c13730d713713a0045e18c088 1137101 paleomix_1.3.7.orig.tar.gz 3cd5f44f890d86cb54b9a1d3e97d60f185a33aab589cf62ea65ac05472dba7db 10492 paleomix_1.3.7-2.debian.tar.xz Files: 9af2d5ef609ff5e13255d282931a1b7f 1137101 paleomix_1.3.7.orig.tar.gz 8434414dfe4f17cd2912db9aeb61d26c 10492 paleomix_1.3.7-2.debian.tar.xz Dgit: 830765de456ab60433b363148d6fb7eac0980bd1 debian archive/debian/1.3.7-2 https://git.dgit.debian.org/paleomix -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmMc/WkUHGVtb2xsaWVy 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./paleomix_1.3.7-2.dsc dpkg-source: info: extracting paleomix in /<> dpkg-source: info: unpacking paleomix_1.3.7.orig.tar.gz dpkg-source: info: unpacking paleomix_1.3.7-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying xfail_command_tests.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24615655 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24615655 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24615655 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package paleomix dpkg-buildpackage: info: source version 1.3.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.10 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.10/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.10 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/nodegraph.py -> /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/pipeline.py -> /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/yaml.py -> /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/main.py -> /<>/.pybuild/cpython3_3.10/build/paleomix copying paleomix/node.py -> /<>/.pybuild/cpython3_3.10/build/paleomix creating /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd copying paleomix/atomiccmd/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd copying paleomix/atomiccmd/pprint.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd copying paleomix/atomiccmd/builder.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd copying paleomix/atomiccmd/sets.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd copying paleomix/atomiccmd/command.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources copying paleomix/resources/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines copying paleomix/pipelines/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines creating /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/bowtie2.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/formats.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/picard.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/validation.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/mapdamage.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/newick.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/phylip.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/adapterremoval.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/mafft.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/sequences.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/commands.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/bedtools.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/raxml.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/bwa.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/examl.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes copying paleomix/nodes/samtools.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/nodes creating /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/depths.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/vcf_to_fasta.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/coverage.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/rmdup_collapsed.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/cleanup.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/validate_fastq.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/factory.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/dupcheck.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/vcf_filter.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools copying paleomix/tools/gtf_to_bed.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools creating /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/text.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/bamfiles.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/vcfwrap.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/utilities.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/timer.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/argparse.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/sampling.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/fileutils.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/vcffilter.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/rtools.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/system.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/sequences.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/bedtools.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/makefile.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/testing.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/versions.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/procs.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common copying paleomix/common/logging.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/pipeline.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/makefile.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/config.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/example.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo copying paleomix/pipelines/phylo/mkfile.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/database.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_tped.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/pipeline.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/common.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_mito.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/config.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey copying paleomix/pipelines/zonkey/build_db.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/nodes.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/paths.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/pipeline.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/trim_pipeline.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/makefile.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/config.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam copying paleomix/pipelines/bam/mkfile.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/phylo.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/genotype.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts copying paleomix/pipelines/phylo/parts/msa.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/summary.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/nuclear.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/report.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/common.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/admixture.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts copying paleomix/pipelines/zonkey/parts/mitochondria.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts creating /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/prefix.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/summary.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/sample.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/library.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/statistics.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/target.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/lane.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts copying paleomix/pipelines/bam/parts/reads.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts creating /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/coverage.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats copying paleomix/tools/bam_stats/common.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats creating /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/__init__.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/_common.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/newick.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/phylip.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/fastq.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/_graph.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/fasta.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats copying paleomix/common/formats/msa.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats running egg_info creating paleomix.egg-info writing paleomix.egg-info/PKG-INFO writing dependency_links to paleomix.egg-info/dependency_links.txt writing entry points to paleomix.egg-info/entry_points.txt writing requirements to paleomix.egg-info/requires.txt writing top-level names to paleomix.egg-info/top_level.txt writing manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'paleomix/yaml/CHANGES' warning: no files found matching 'paleomix/yaml/LICENSE' warning: no files found matching 'paleomix/yaml/PKG-INFO' warning: no files found matching 'paleomix/yaml/README' warning: no files found matching 'pylint.conf' adding license file 'LICENSE' writing manifest file 'paleomix.egg-info/SOURCES.txt' creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline copying paleomix/resources/examples/bam_pipeline/makefile.yaml -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data copying paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/prefixes copying paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/prefixes creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline copying paleomix/resources/examples/phylo_pipeline/setup.sh -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline copying paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment copying paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment copying paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny copying paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/reports creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/reports/zonkey copying paleomix/resources/reports/zonkey/report.css -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/reports/zonkey creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/common copying paleomix/resources/rscripts/common/requires.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/common creating /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/admixture.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/coverage.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/pca.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/tinytree.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey copying paleomix/resources/rscripts/zonkey/treemix.r -> /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey debian/rules override_dh_auto_test make[1]: Entering directory '/<>' PATH=/<>/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test I: pybuild pybuild:300: cp -a README.rst /<>/.pybuild/cpython3_3.10/build; I: pybuild base:240: cd /<>/.pybuild/cpython3_3.10/build; python3.10 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.10.8, pytest-7.1.2, pluggy-1.0.0+repack rootdir: /<>, configfile: setup.cfg collected 1494 items tests/node_test.py ..................................................... [ 3%] ......................................... [ 6%] tests/nodegraph_test.py ......... [ 6%] tests/atomiccmd_test/builder_test.py ................................... [ 9%] ...................................................... [ 12%] tests/atomiccmd_test/command_test.py ................................... [ 15%] ........................................................................ [ 20%] ................ [ 21%] tests/atomiccmd_test/pprint_test.py .................................... [ 23%] .. [ 23%] tests/atomiccmd_test/sets_test.py ...................................... [ 26%] ............ [ 26%] tests/common_tests/bedtools_test.py ............................... [ 29%] tests/common_tests/fileutils_test.py ................................... [ 31%] ...................................................................... [ 36%] tests/common_tests/makefile_test.py .................................... [ 38%] ........................................................................ [ 43%] ........................................................................ [ 48%] ........................................................................ [ 52%] ........................................................................ [ 57%] ............................... [ 59%] tests/common_tests/sampling_test.py ........................ [ 61%] tests/common_tests/sequences_test.py ................................... [ 63%] ............... [ 64%] tests/common_tests/text_test.py ....................................... [ 67%] tests/common_tests/utilities_test.py ................................... [ 69%] ........................................................................ [ 74%] .. [ 74%] tests/common_tests/versions_test.py .................................... [ 77%] ............................................................ [ 81%] tests/common_tests/formats_tests/fasta_test.py ......................... [ 82%] ............. [ 83%] tests/common_tests/formats_tests/fastq_test.py ......................... [ 85%] ........... [ 86%] tests/common_tests/formats_tests/msa_test.py ........................... [ 87%] ................... [ 89%] tests/common_tests/formats_tests/newick_test.py ........................ [ 90%] ........................................................................ [ 95%] ...... [ 95%] tests/common_tests/formats_tests/phylip_test.py ........ [ 96%] tests/tools_test/factory_test.py xXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX [ 99%] XXXXXXXXXXXXX [100%] ================= 1442 passed, 1 xfailed, 51 xpassed in 13.35s ================= make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/paleomix/ -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/paleomix running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing paleomix.egg-info/PKG-INFO writing dependency_links to paleomix.egg-info/dependency_links.txt writing entry points to paleomix.egg-info/entry_points.txt writing requirements to paleomix.egg-info/requires.txt writing top-level names to paleomix.egg-info/top_level.txt reading manifest file 'paleomix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'paleomix/yaml/CHANGES' warning: no files found matching 'paleomix/yaml/LICENSE' warning: no files found matching 'paleomix/yaml/PKG-INFO' warning: no files found matching 'paleomix/yaml/README' warning: no files found matching 'pylint.conf' adding license file 'LICENSE' writing manifest file 'paleomix.egg-info/SOURCES.txt' running install_lib creating /<>/debian/paleomix/usr creating /<>/debian/paleomix/usr/lib creating /<>/debian/paleomix/usr/lib/python3.10 creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix copying /<>/.pybuild/cpython3_3.10/build/paleomix/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/pprint.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/builder.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/sets.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__pycache__/sets.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__pycache__/pprint.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__pycache__/command.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/__pycache__/builder.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/atomiccmd/command.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/reports creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/reports/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/reports/zonkey/report.css -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/reports/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey/tinytree.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey/coverage.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey/pca.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey/admixture.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/zonkey/treemix.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/zonkey creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/rscripts/common/requires.r -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/rscripts/common creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/__pycache__ creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/setup.sh -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/setup.sh -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2 copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline/data copying /<>/.pybuild/cpython3_3.10/build/paleomix/resources/examples/bam_pipeline/makefile.yaml -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/bam_pipeline copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodegraph.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipeline.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/pipeline.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/mkfile.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/config.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/pipeline.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/makefile.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/__pycache__/example.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__pycache__ creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/phylo.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/genotype.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/__pycache__/genotype.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/__pycache__/msa.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/__pycache__/phylo.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/parts/msa.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/makefile.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/config.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/example.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/phylo/mkfile.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/database.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/build_tped.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/pipeline.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/common.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/build_mito.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/config.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/pipeline.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/database.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/build_db.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/build_tped.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/__pycache__/common.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__pycache__ creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/summary.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/nuclear.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/report.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/common.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/nuclear.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/admixture.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/summary.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/report.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/common.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/__pycache__/mitochondria.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/admixture.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/parts/mitochondria.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/build_mito.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/config.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/zonkey/build_db.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/__pycache__ creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/nodes.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/paths.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/pipeline.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/trim_pipeline.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/paths.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/mkfile.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/config.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/pipeline.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/trim_pipeline.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/makefile.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/__pycache__/nodes.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__pycache__ creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/prefix.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/summary.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/sample.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/statistics.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/library.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/sample.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/target.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/summary.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/reads.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/prefix.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/__pycache__/lane.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/library.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/statistics.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/target.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/lane.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/parts/reads.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/makefile.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/config.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam copying /<>/.pybuild/cpython3_3.10/build/paleomix/pipelines/bam/mkfile.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/bowtie2.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/formats.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/picard.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/validation.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/mapdamage.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/newick.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/commands.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/formats.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/bedtools.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/mafft.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/raxml.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/adapterremoval.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/phylip.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/picard.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/validation.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/bwa.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/bowtie2.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/newick.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/samtools.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/examl.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/mapdamage.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/__pycache__/sequences.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/phylip.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/adapterremoval.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/mafft.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/sequences.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/commands.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/bedtools.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/raxml.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/bwa.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/examl.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes copying /<>/.pybuild/cpython3_3.10/build/paleomix/nodes/samtools.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/depths.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/vcf_to_fasta.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/coverage.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/common.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/__pycache__/common.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/bam_stats/__pycache__/coverage.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/coverage.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/rmdup_collapsed.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/cleanup.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/validate_fastq.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/rmdup_collapsed.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/vcf_filter.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/vcf_to_fasta.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/validate_fastq.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/factory.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/cleanup.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/depths.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/__pycache__/coverage.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/factory.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/dupcheck.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/vcf_filter.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools copying /<>/.pybuild/cpython3_3.10/build/paleomix/tools/gtf_to_bed.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/yaml.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/pipeline.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/node.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/nodegraph.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/__pycache__/main.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/yaml.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix copying /<>/.pybuild/cpython3_3.10/build/paleomix/main.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/text.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/bamfiles.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/vcfwrap.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/utilities.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/timer.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/argparse.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__init__.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/_common.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/newick.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/fastq.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/phylip.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/_graph.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/_common.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/fasta.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/newick.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/__pycache__/msa.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/phylip.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/fastq.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/_graph.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/fasta.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/formats/msa.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/sampling.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/fileutils.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/vcffilter.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/rtools.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/system.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common creating /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/argparse.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/system.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/bedtools.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/timer.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/sampling.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/__init__.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/bamfiles.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/vcffilter.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/utilities.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/vcfwrap.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/rtools.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/makefile.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/fileutils.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/versions.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/procs.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/logging.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/text.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/testing.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/__pycache__/sequences.cpython-310.pyc -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/sequences.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/bedtools.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/makefile.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/testing.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/versions.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/procs.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/common/logging.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common copying /<>/.pybuild/cpython3_3.10/build/paleomix/node.py -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix copying /<>/.pybuild/cpython3_3.10/build/README.rst -> /<>/debian/paleomix/usr/lib/python3.10/dist-packages byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/pprint.py to pprint.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/builder.py to builder.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/sets.py to sets.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/atomiccmd/command.py to command.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py to synthesize_reads.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodegraph.py to nodegraph.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipeline.py to pipeline.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/pipeline.py to pipeline.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/phylo.py to phylo.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/genotype.py to genotype.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/parts/msa.py to msa.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/makefile.py to makefile.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/config.py to config.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/example.py to example.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/phylo/mkfile.py to mkfile.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/database.py to database.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/build_tped.py to build_tped.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/pipeline.py to pipeline.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/common.py to common.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/summary.py to summary.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/nuclear.py to nuclear.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/report.py to report.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/common.py to common.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/admixture.py to admixture.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/parts/mitochondria.py to mitochondria.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/build_mito.py to build_mito.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/config.py to config.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/zonkey/build_db.py to build_db.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/nodes.py to nodes.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/paths.py to paths.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/pipeline.py to pipeline.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/trim_pipeline.py to trim_pipeline.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/prefix.py to prefix.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/summary.py to summary.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/sample.py to sample.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/library.py to library.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/statistics.py to statistics.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/target.py to target.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/lane.py to lane.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/parts/reads.py to reads.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/makefile.py to makefile.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/config.py to config.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/pipelines/bam/mkfile.py to mkfile.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/bowtie2.py to bowtie2.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/formats.py to formats.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/picard.py to picard.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/validation.py to validation.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/mapdamage.py to mapdamage.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/newick.py to newick.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/phylip.py to phylip.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/adapterremoval.py to adapterremoval.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/mafft.py to mafft.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/sequences.py to sequences.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/commands.py to commands.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/bedtools.py to bedtools.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/raxml.py to raxml.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/bwa.py to bwa.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/examl.py to examl.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/nodes/samtools.py to samtools.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/depths.py to depths.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/vcf_to_fasta.py to vcf_to_fasta.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/coverage.py to coverage.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/bam_stats/common.py to common.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/coverage.py to coverage.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/rmdup_collapsed.py to rmdup_collapsed.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/cleanup.py to cleanup.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/validate_fastq.py to validate_fastq.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/factory.py to factory.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/dupcheck.py to dupcheck.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/vcf_filter.py to vcf_filter.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/tools/gtf_to_bed.py to gtf_to_bed.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/yaml.py to yaml.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/main.py to main.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/text.py to text.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/bamfiles.py to bamfiles.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/vcfwrap.py to vcfwrap.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/utilities.py to utilities.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/timer.py to timer.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/argparse.py to argparse.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/_common.py to _common.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/newick.py to newick.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/phylip.py to phylip.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/fastq.py to fastq.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/_graph.py to _graph.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/fasta.py to fasta.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/formats/msa.py to msa.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/sampling.py to sampling.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/fileutils.py to fileutils.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/vcffilter.py to vcffilter.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/rtools.py to rtools.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/system.py to system.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/sequences.py to sequences.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/bedtools.py to bedtools.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/makefile.py to makefile.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/testing.py to testing.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/versions.py to versions.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/procs.py to procs.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/common/logging.py to logging.cpython-310.pyc byte-compiling /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix/node.py to node.cpython-310.pyc running install_egg_info Copying paleomix.egg-info to /<>/debian/paleomix/usr/lib/python3.10/dist-packages/paleomix-1.3.7.egg-info Skipping SOURCES.txt running install_scripts Installing paleomix script to /<>/debian/paleomix/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -name LICENSE -delete find debian -name README.rst -delete make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs # since tests dir contains empty files which are used afterwards for # testing and dh_installdocs is ignoring empty files we need to make # sure all files are really copied rsync -a -v tests debian/paleomix/usr/share/doc/paleomix sending incremental file list tests/atomiccmd_test/ tests/common_tests/ tests/common_tests/formats_tests/ tests/data/ tests/data/empty_file_1 tests/data/empty_file_2 sent 953 bytes received 76 bytes 2,058.00 bytes/sec total size is 334,736 speedup is 325.30 # test runner is seeking for paleomix modules in source - we use inside the installed package ### sed -i 's:(find paleomix -mindepth 1:(find /usr/lib/python*/dist-packages/paleomix -mindepth 1:' debian/*/usr/share/doc/*/tests/run #echo "====== Also empty files belong to the docs ======" #find debian -name "empty_file*" #find debian -name "timestamp_*" #echo "====== Hope something was printed between these lines ====" # # This test tries to execute setup.sh which does not work outside source directory find debian/paleomix/usr/share/doc/ -name fileutils_test.py -delete find debian/paleomix/usr/share/doc/ -name setup.h -delete make[1]: Leaving directory '/<>' dh_installchangelogs -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 --verbose --shebang=/usr/bin/python3 D: dh_python3 dh_python3:175: version: 5.20221008 D: dh_python3 dh_python3:176: argv: ['/usr/bin/dh_python3', '--verbose', '--shebang=/usr/bin/python3'] D: dh_python3 dh_python3:177: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang='/usr/bin/python3', ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:178: supported Python versions: 3.10,3.11 (default=3.10) D: dh_python3 debhelper:172: source=paleomix, binary packages=['paleomix'] D: dh_python3 dh_python3:196: processing package paleomix... D: dh_python3 fs:52: moving files from debian/paleomix/usr/lib/python3.10/dist-packages to debian/paleomix/usr/lib/python3/dist-packages/ I: dh_python3 tools:114: replacing shebang in debian/paleomix/usr/bin/paleomix D: dh_python3 fs:399: package paleomix details = {'requires.txt': {'debian/paleomix/usr/lib/python3/dist-packages/paleomix-1.3.7.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package paleomix D: dh_python3 pydist:173: trying to find dependency for coloredlogs>=10.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for configargparse>=0.13.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pysam>=0.10.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for ruamel.yaml>=0.16.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for setproctitle>=1.1.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'python3-coloredlogs', 'python3-setproctitle', 'python3-ruamel.yaml', 'python3-pysam', 'python3:any', 'python3-configargparse'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/<>' dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms for rs in `find debian -iname "*.r"` ; do \ if head -n 1 $rs | grep -q '^#!/usr/bin/.*Rscript' ; then \ chmod +x $rs ; \ else \ chmod -x $rs ; \ fi ; \ done make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 pkgstriptranslations: processing paleomix (in debian/paleomix); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paleomix/DEBIAN/control, package paleomix, directory debian/paleomix pkgstripfiles: Running PNG optimization (using 4 cpus) for package paleomix ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paleomix' in '../paleomix_1.3.7-2_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../paleomix_1.3.7-2_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../paleomix_1.3.7-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-06T09:32:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paleomix_1.3.7-2_ppc64el.changes: --------------------------------- Format: 1.8 Date: Sat, 10 Sep 2022 22:54:13 +0200 Source: paleomix Binary: paleomix Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.3.7-2 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: paleomix - pipelines and tools for the processing of ancient and modern HTS Closes: 1018433 Changes: paleomix (1.3.7-2) unstable; urgency=medium . [ Andreas Tille ] * d/watch: Proper upstream tarball name . [ Étienne Mollier ] * d/t/control: remove unneeded dependency to python3-nose. (Closes: #1018433) * d/lintian-overrides: fix mismatched override on empty files. Checksums-Sha1: c06755f917d61233bf54e877c7b3b5265cab342e 12244 paleomix_1.3.7-2_ppc64el.buildinfo bb2dd26bafdba43bdf9418a2793b5c1652b850ad 970896 paleomix_1.3.7-2_ppc64el.deb Checksums-Sha256: 94ba9803ba24604f2c692930fd9cebd508c356fb1576f64384bcf5b8d20433d7 12244 paleomix_1.3.7-2_ppc64el.buildinfo 9995a0c5f8c62477835bad78dcfbbfc7ffd52eb819973773d6145364cd760966 970896 paleomix_1.3.7-2_ppc64el.deb Files: e603e2da4ab7b0652d3c20a4e0fefa0c 12244 science optional paleomix_1.3.7-2_ppc64el.buildinfo bbe6b2c16cec67e902b4e0912a830edd 970896 science optional paleomix_1.3.7-2_ppc64el.deb /<>/paleomix_1.3.7-2_ppc64el.changes.new could not be renamed to /<>/paleomix_1.3.7-2_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: paleomix Binary: paleomix Architecture: ppc64el Version: 1.3.7-2 Checksums-Md5: bbe6b2c16cec67e902b4e0912a830edd 970896 paleomix_1.3.7-2_ppc64el.deb Checksums-Sha1: bb2dd26bafdba43bdf9418a2793b5c1652b850ad 970896 paleomix_1.3.7-2_ppc64el.deb Checksums-Sha256: 9995a0c5f8c62477835bad78dcfbbfc7ffd52eb819973773d6145364cd760966 970896 paleomix_1.3.7-2_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Sun, 06 Nov 2022 09:32:19 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), adwaita-icon-theme (= 41.0-1ubuntu1), at-spi2-common (= 2.46.0-3), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-powerpc64le-linux-gnu (= 2.39-8ubuntu2), bowtie2 (= 2.4.5-1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), ca-certificates-java (= 20220719), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), default-jre (= 2:1.17-73), default-jre-headless (= 2:1.17-73), dh-autoreconf (= 20), dh-python (= 5.20221008), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14+20220924-2), examl (= 3.0.22-3), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.8-3), groff-base (= 1.22.4-8build1), gtk-update-icon-cache (= 3.24.34-3ubuntu2), gzip (= 1.12-1ubuntu1), hicolor-icon-theme (= 0.17-2), hostname (= 3.23ubuntu2), humanity-icon-theme (= 0.6.16), ibverbs-providers (= 43.0-1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), java-common (= 0.73), libacl1 (= 2.3.1-1), libapache-pom-java (= 25-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-9ubuntu1), libasound2 (= 1.2.7.2-1), libasound2-data (= 1.2.7.2-1), libatk1.0-0 (= 2.46.0-3), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libavahi-client3 (= 0.8-6ubuntu1), libavahi-common-data (= 0.8-6ubuntu1), libavahi-common3 (= 0.8-6ubuntu1), libbarclay-java (= 4.0.2+dfsg-1), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.7-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcbor0.8 (= 0.8.0-2ubuntu1), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcommons-codec-java (= 1.15-1), libcommons-compress-java (= 1.21-1), libcommons-io-java (= 2.11.0-2), libcommons-jexl2-java (= 2.1.1-6), libcommons-lang3-java (= 3.12.0-2), libcommons-logging-java (= 1.2-3), libcommons-math3-java (= 3.6.1-3), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.30-1), libcrypt1 (= 1:4.4.30-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcups2 (= 2.4.2-1ubuntu2), libcurl3-gnutls (= 7.86.0-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdbus-1-3 (= 1.14.0-2ubuntu3), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.9ubuntu1), libdrm-amdgpu1 (= 2.4.113-2), libdrm-common (= 2.4.113-2), libdrm-nouveau2 (= 2.4.113-2), libdrm-radeon1 (= 2.4.113-2), libdrm2 (= 2.4.113-2), libdw1 (= 0.187-4), libedit2 (= 3.1-20221030-1), libelf1 (= 0.187-4), libevent-core-2.1-7a (= 2.1.12-stable-5ubuntu1), libevent-pthreads-2.1-7 (= 2.1.12-stable-5ubuntu1), libexpat1 (= 2.5.0-1), libfabric1 (= 1.11.0-3), libffi8 (= 3.4.4-1), libfido2-1 (= 1.12.0-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreemarker-java (= 2.3.31-1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1ubuntu1), libgatk-native-bindings-java (= 1.0.0-2.1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgdk-pixbuf-2.0-0 (= 2.42.9+dfsg-1), libgdk-pixbuf2.0-common (= 2.42.9+dfsg-1), libgif7 (= 5.2.1-2.5), libgkl-java (= 0.8.10+dfsg-3), libgl1 (= 1.5.0-1), libgl1-mesa-dri (= 22.2.1-1ubuntu1), libglapi-mesa (= 22.2.1-1ubuntu1), libglib2.0-0 (= 2.74.1-1), libglvnd0 (= 1.5.0-1), libglx-mesa0 (= 22.2.1-1ubuntu1), libglx0 (= 1.5.0-1), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgoogle-gson-java (= 2.9.1-1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20-1), libgtk2.0-0 (= 2.24.33-2ubuntu2), libgtk2.0-common (= 2.24.33-2ubuntu2), libharfbuzz0b (= 2.7.4-1ubuntu5), libhogweed6 (= 3.8.1-2), libhts3 (= 1.13+ds-2build2), libhtscodecs2 (= 1.3.0-4), libhtsjdk-java (= 2.24.1+dfsg-3), libhttpclient-java (= 4.5.13-3), libhttpcore-java (= 4.4.15-1), libhwloc-plugins (= 2.8.0-1), libhwloc15 (= 2.8.0-1), libibverbs1 (= 43.0-1), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-9ubuntu1), libjbig0 (= 2.1-3.1build3), libjoptsimple-java (= 5.0.4-4), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjson-simple-java (= 2.3.0-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblcms2-2 (= 2.13.1-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu2), liblerc3 (= 3.0+ds-1ubuntu1), liblightcouch-java (= 0.0.6-1.1), libllvm15 (= 1:15.0.4-1), liblog4j2-java (= 2.17.2-1), liblsan0 (= 12.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.7-0.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmongodb-java (= 3.6.3-2), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libngs-java (= 2.11.2-4), libngs-sdk-dev (= 2.11.2-4), libngs-sdk2 (= 2.11.2-4), libnl-3-200 (= 3.7.0-0.2), libnl-route-3-200 (= 3.7.0-0.2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libnspr4 (= 2:4.35-1), libnss3 (= 2:3.83-1), libnuma1 (= 2.0.14-3ubuntu2), libopenmpi3 (= 4.1.4-2ubuntu2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpango-1.0-0 (= 1.50.10+ds-1), libpangocairo-1.0-0 (= 1.50.10+ds-1), libpangoft2-1.0-0 (= 1.50.10+ds-1), libpciaccess0 (= 0.17-1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcsclite1 (= 1.9.9-1), libperl5.36 (= 5.36.0-4ubuntu2), libpicard-java (= 2.27.2+dfsg-2), libpipeline1 (= 1.5.6-3), libpixman-1-0 (= 0.40.0-1build4), libpmix2 (= 4.1.2-2ubuntu2), libpng16-16 (= 1.6.38-2), libpopt0 (= 1.19+dfsg-1), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.10.6-1ubuntu1), libpython3.10-minimal (= 3.10.8-3), libpython3.10-stdlib (= 3.10.8-3), libquadmath0 (= 12.2.0-9ubuntu1), librdmacm1 (= 43.0-1), libreadline8 (= 8.2-1.1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsemanage-common (= 3.4-1build1), libsemanage2 (= 3.4-1build1), libsensors-config (= 1:3.6.0-7ubuntu1), libsensors5 (= 1:3.6.0-7ubuntu1), libsepol2 (= 3.4-2), libslf4j-java (= 1.7.32-1), libsmartcols1 (= 2.38-4ubuntu1), libsnappy-java (= 1.1.8.3-1), libsnappy-jni (= 1.1.8.3-1), libsnappy1v5 (= 1.1.9-2), libsqlite3-0 (= 3.39.4-1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.19.0-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0-4ubuntu3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-9ubuntu1), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libucx0 (= 1.13.0-1), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38-4ubuntu1), libwebp7 (= 1.2.2-2), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libx11-xcb1 (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1build5), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-present0 (= 1.15-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-xfixes0 (= 1.15-1), libxcb1 (= 1.15-1), libxcomposite1 (= 1:0.4.5-1build2), libxcursor1 (= 1:1.2.1-1), libxdamage1 (= 1:1.1.5-2build2), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-2), libxi6 (= 2:1.8-1build1), libxinerama1 (= 2:1.1.4-3), libxml2 (= 2.9.14+dfsg-1.1), libxnvctrl0 (= 510.47.03-0ubuntu1), libxrandr2 (= 2:1.5.2-2), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxtst6 (= 2:1.2.3-1.1), libxxf86vm1 (= 1:1.1.4-1build3), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.0-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), ocl-icd-libopencl1 (= 2.2.14-3), openjdk-17-jre (= 17.0.4+8-1), openjdk-17-jre-headless (= 17.0.4+8-1), openmpi-bin (= 4.1.4-2ubuntu2), openmpi-common (= 4.1.4-2ubuntu2), openssh-client (= 1:9.0p1-1ubuntu8), openssl (= 3.0.5-2ubuntu1), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), picard-tools (= 2.27.2+dfsg-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.6-1ubuntu1), python3-attr (= 22.1.0-1), python3-coloredlogs (= 15.0.1-1), python3-configargparse (= 1.5.3-1), python3-distutils (= 3.10.8-1), python3-humanfriendly (= 10.0-3), python3-iniconfig (= 1.1.1-2), python3-lib2to3 (= 3.10.8-1), python3-minimal (= 3.10.6-1ubuntu1), python3-more-itertools (= 8.10.0-2), python3-packaging (= 21.3-1.1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 1.0.0+repack-1), python3-py (= 1.11.0-1), python3-pyparsing (= 3.0.7-3), python3-pysam (= 0.17.0+ds-2build1), python3-pytest (= 7.1.2-2ubuntu1), python3-ruamel.yaml (= 0.17.16-1), python3-ruamel.yaml.clib (= 0.2.6-1build1), python3-setproctitle (= 1.3.1-1), python3-setuptools (= 59.6.0-1.2), python3-tomli (= 2.0.1-1), python3.10 (= 3.10.8-3), python3.10-minimal (= 3.10.8-3), readline-common (= 8.2-1.1), rpcsvc-proto (= 1.4.2-0ubuntu6), rsync (= 3.2.6-4), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.31), shared-mime-info (= 2.2-1), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), ubuntu-mono (= 20.10-0ubuntu2), ucf (= 3.0043), usrmerge (= 29ubuntu2), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xz-utils (= 5.2.7-0.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1662843253" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paleomix_1.3.7-2_ppc64el.deb ---------------------------- new Debian package, version 2.0. size 970896 bytes: control archive=6570 bytes. 1662 bytes, 27 lines control 20972 bytes, 205 lines md5sums 267 bytes, 12 lines * postinst #!/bin/sh 380 bytes, 12 lines * prerm #!/bin/sh Package: paleomix Version: 1.3.7-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1992 Depends: python3-coloredlogs, python3-configargparse, python3-pysam, python3-ruamel.yaml, python3-setproctitle, python3:any, adapterremoval, bedtools, bowtie2, bwa, bcftools, examl, mafft, mapdamage, phylip, picard-tools, r-base-core, radiant, raxml, samtools Section: science Priority: optional Homepage: https://geogenetics.ku.dk/publications/paleomix Description: pipelines and tools for the processing of ancient and modern HTS data The PALEOMIX pipelines are a set of pipelines and tools designed to aid the rapid processing of High-Throughput Sequencing (HTS) data: The BAM pipeline processes de-multiplexed reads from one or more samples, through sequence processing and alignment, to generate BAM alignment files useful in downstream analyses; the Phylogenetic pipeline carries out genotyping and phylogenetic inference on BAM alignment files, either produced using the BAM pipeline or generated elsewhere; and the Zonkey pipeline carries out a suite of analyses on low coverage equine alignments, in order to detect the presence of F1-hybrids in archaeological assemblages. In addition, PALEOMIX aids in metagenomic analysis of the extracts. . 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 10228 Build-Time: 27 Distribution: lunar-proposed Host Architecture: ppc64el Install-Time: 78 Job: paleomix_1.3.7-2.dsc Machine Architecture: ppc64el Package: paleomix Package-Time: 107 Source-Version: 1.3.7-2 Space: 10228 Status: successful Version: 1.3.7-2 -------------------------------------------------------------------------------- Finished at 2022-11-06T09:32:20Z Build needed 00:01:47, 10228k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24615655 Scanning for processes to kill in build PACKAGEBUILD-24615655