RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:39:51 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.0-2ubuntu2. Syncing the system clock with the buildd NTP service... 25 May 12:36:34 ntpdate[30895]: adjust time server 10.211.37.1 offset -0.000027 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1cc29f56af361d7057dec602d4ee6a85632bfeda', '/home/buildd/filecache-default/0cd6f49524ddce4d01615e8f872d7971c9b746aa'] Unpacking chroot for build 1cc29f56af361d7057dec602d4ee6a85632bfeda RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1cc29f56af361d7057dec602d4ee6a85632bfeda'] Mounting chroot for build 1cc29f56af361d7057dec602d4ee6a85632bfeda RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1cc29f56af361d7057dec602d4ee6a85632bfeda', 'deb http://ftpmaster.internal/ubuntu quantal main restricted universe multiverse'] Overriding sources.list in build-1cc29f56af361d7057dec602d4ee6a85632bfeda RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1cc29f56af361d7057dec602d4ee6a85632bfeda', 'amd64'] Updating debian chroot for build 1cc29f56af361d7057dec602d4ee6a85632bfeda Ign http://ftpmaster.internal quantal InRelease Get:1 http://ftpmaster.internal quantal Release.gpg [198 B] Get:2 http://ftpmaster.internal quantal Release [49.6 kB] Get:3 http://ftpmaster.internal quantal/main amd64 Packages [1288 kB] Get:4 http://ftpmaster.internal quantal/restricted amd64 Packages [8457 B] Get:5 http://ftpmaster.internal quantal/universe amd64 Packages [5106 kB] Get:6 http://ftpmaster.internal quantal/multiverse amd64 Packages [123 kB] Get:7 http://ftpmaster.internal quantal/main TranslationIndex [74 B] Get:8 http://ftpmaster.internal quantal/multiverse TranslationIndex [73 B] Get:9 http://ftpmaster.internal quantal/restricted TranslationIndex [72 B] Get:10 http://ftpmaster.internal quantal/universe TranslationIndex [75 B] Get:11 http://ftpmaster.internal quantal/main Translation-en [719 kB] Get:12 http://ftpmaster.internal quantal/multiverse Translation-en [94.4 kB] Get:13 http://ftpmaster.internal quantal/restricted Translation-en [2401 B] Get:14 http://ftpmaster.internal quantal/universe Translation-en [3551 kB] Fetched 10.9 MB in 3s (3628 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: grep libasn1-8-heimdal libdb5.1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn11 libkrb5-26-heimdal libpng12-0 libroken18-heimdal libsqlite3-0 libusb-0.1-4 libwind0-heimdal perl perl-base perl-modules 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 74.8 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! grep perl perl-base perl-modules libdb5.1 libusb-0.1-4 libsqlite3-0 libpng12-0 libroken18-heimdal libasn1-8-heimdal libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libidn11 Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main grep amd64 2.12-2 [277 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main perl amd64 5.14.2-10 [4417 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main perl-base amd64 5.14.2-10 [1512 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main perl-modules all 5.14.2-10 [3392 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libdb5.1 amd64 5.1.29-4 [704 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libusb-0.1-4 amd64 2:0.1.12-21 [17.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main libsqlite3-0 amd64 3.7.12.1-1 [364 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main libpng12-0 amd64 1.2.49-1ubuntu1 [130 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main libroken18-heimdal amd64 1.6~git20120403+dfsg1-1 [46.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main libasn1-8-heimdal amd64 1.6~git20120403+dfsg1-1 [225 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main libhcrypto4-heimdal amd64 1.6~git20120403+dfsg1-1 [104 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main libheimbase1-heimdal amd64 1.6~git20120403+dfsg1-1 [33.4 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main libwind0-heimdal amd64 1.6~git20120403+dfsg1-1 [77.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main libhx509-5-heimdal amd64 1.6~git20120403+dfsg1-1 [126 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main libkrb5-26-heimdal amd64 1.6~git20120403+dfsg1-1 [234 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main libheimntlm0-heimdal amd64 1.6~git20120403+dfsg1-1 [16.1 kB] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main libgssapi3-heimdal amd64 1.6~git20120403+dfsg1-1 [109 kB] Get:18 http://ftpmaster.internal/ubuntu/ quantal/main libidn11 amd64 1.25-1 [123 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.9 MB in 0s (30.8 MB/s) (Reading database ... 12279 files and directories currently installed.) Preparing to replace grep 2.11-3 (using .../archives/grep_2.12-2_amd64.deb) ... Unpacking replacement grep ... Setting up grep (2.12-2) ... (Reading database ... 12279 files and directories currently installed.) Preparing to replace perl 5.14.2-9 (using .../perl_5.14.2-10_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-9 (using .../perl-base_5.14.2-10_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-10) ... (Reading database ... 12284 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-9 (using .../perl-modules_5.14.2-10_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.1 5.1.29-1build1 (using .../libdb5.1_5.1.29-4_amd64.deb) ... Unpacking replacement libdb5.1 ... Setting up libdb5.1 (5.1.29-4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12284 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-20 (using .../libusb-0.1-4_2%3a0.1.12-21_amd64.deb) ... Unpacking replacement libusb-0.1-4 ... Setting up libusb-0.1-4 (2:0.1.12-21) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12284 files and directories currently installed.) Preparing to replace libsqlite3-0 3.7.11-3 (using .../libsqlite3-0_3.7.12.1-1_amd64.deb) ... Unpacking replacement libsqlite3-0 ... Preparing to replace libpng12-0 1.2.46-3ubuntu4 (using .../libpng12-0_1.2.49-1ubuntu1_amd64.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libroken18-heimdal 1.6~git20120311.dfsg.1-2 (using .../libroken18-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libroken18-heimdal ... Preparing to replace libasn1-8-heimdal 1.6~git20120311.dfsg.1-2 (using .../libasn1-8-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libasn1-8-heimdal ... Preparing to replace libhcrypto4-heimdal 1.6~git20120311.dfsg.1-2 (using .../libhcrypto4-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libhcrypto4-heimdal ... Preparing to replace libheimbase1-heimdal 1.6~git20120311.dfsg.1-2 (using .../libheimbase1-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libheimbase1-heimdal ... Preparing to replace libwind0-heimdal 1.6~git20120311.dfsg.1-2 (using .../libwind0-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libwind0-heimdal ... Preparing to replace libhx509-5-heimdal 1.6~git20120311.dfsg.1-2 (using .../libhx509-5-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libhx509-5-heimdal ... Preparing to replace libkrb5-26-heimdal 1.6~git20120311.dfsg.1-2 (using .../libkrb5-26-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libkrb5-26-heimdal ... Preparing to replace libheimntlm0-heimdal 1.6~git20120311.dfsg.1-2 (using .../libheimntlm0-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libheimntlm0-heimdal ... Preparing to replace libgssapi3-heimdal 1.6~git20120311.dfsg.1-2 (using .../libgssapi3-heimdal_1.6~git20120403+dfsg1-1_amd64.deb) ... Unpacking replacement libgssapi3-heimdal ... Preparing to replace libidn11 1.24-2 (using .../libidn11_1.25-1_amd64.deb) ... Unpacking replacement libidn11 ... Setting up libsqlite3-0 (3.7.12.1-1) ... Setting up libpng12-0 (1.2.49-1ubuntu1) ... Setting up libroken18-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libasn1-8-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libhcrypto4-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libheimbase1-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libwind0-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libhx509-5-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libkrb5-26-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libheimntlm0-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libgssapi3-heimdal (1.6~git20120403+dfsg1-1) ... Setting up libidn11 (1.25-1) ... Setting up perl-modules (5.14.2-10) ... Setting up perl (5.14.2-10) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1cc29f56af361d7057dec602d4ee6a85632bfeda', 'amd64', 'quantal', '--nolog', '--batch', '--archive=ubuntu', '--dist=quantal', '--purpose=PRIMARY', '--architecture=amd64', '--comp=multiverse', 'paml_4.5-1.dsc'] Initiating build 1cc29f56af361d7057dec602d4ee6a85632bfeda with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:39:51 UTC 2012 x86_64 Automatic build of paml_4.5-1 on komainu by sbuild/amd64 1.170.5 Build started at 20120525-1237 ****************************************************************************** paml_4.5-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5843 kB of archives. After this operation, 18.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main libmagic1 amd64 5.11-1 [220 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main libpipeline1 amd64 1.2.1-1 [26.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main libxml2 amd64 2.7.8.dfsg-5.1ubuntu5 [673 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libcroco3 amd64 0.6.5-1 [99.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libunistring0 amd64 0.9.3-5 [427 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libgettextpo0 amd64 0.18.1.1-5ubuntu4 [125 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main file amd64 5.11-1 [20.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main bsdmainutils amd64 9.0.2ubuntu1 [201 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main gettext-base amd64 0.18.1.1-5ubuntu4 [80.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main groff-base amd64 1.21-7 [1046 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main man-db amd64 2.6.1-2 [756 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main html2text amd64 1.3.2a-15 [104 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main gettext amd64 0.18.1.1-5ubuntu4 [1207 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main dh-apparmor all 2.7.102-0ubuntu4 [9548 B] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main debhelper all 9.20120419ubuntu2 [609 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5843 kB in 0s (22.9 MB/s) Selecting previously unselected package libmagic1. (Reading database ... 12284 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu5_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu4_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.2ubuntu1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu4_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu4_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu4_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419ubuntu2_all.deb) ... Setting up libmagic1 (5.11-1) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu5) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu4) ... Setting up file (5.11-1) ... Setting up bsdmainutils (9.0.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu4) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu4) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu4) ... Setting up debhelper (9.20120419ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu12 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu8 gcc-4.7_4.7.0-7ubuntu4 g++-4.7_4.7.0-7ubuntu4 binutils_2.22-6ubuntu1 libstdc++6-4.7-dev_4.7.0-7ubuntu4 libstdc++6_4.7.0-7ubuntu4 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Tue May 22 12:25:04 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./paml_4.5-1.dsc dpkg-source: info: extracting paml in paml-4.5 dpkg-source: info: unpacking paml_4.5.orig.tar.gz dpkg-source: info: unpacking paml_4.5-1.debian.tar.gz dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-buildpackage: source package paml dpkg-buildpackage: source version 4.5-1 dpkg-source --before-build paml-4.5 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/paml-4.5' echo "Cleaning binaries" Cleaning binaries rm -f make[1]: Leaving directory `/build/buildd/paml-4.5' dh_clean debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/paml-4.5' echo "Executing make all in src directory, instead." Executing make all in src directory, instead. make -C src all make[2]: Entering directory `/build/buildd/paml-4.5/src' cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o baseml baseml.c tools.c -lm In file included from baseml.c:129:0: treesub.c: In function 'ReadSeq': treesub.c:438:10: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c:438:10: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c:446:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c:446:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c: In function 'printPatterns': treesub.c:590:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c:590:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c: In function 'AllPatterns': treesub.c:811:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c:811:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from baseml.c:11:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from baseml.c:129:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] In file included from baseml.c:129:0: baseml.c: In function 'DatingHeteroData': treesub.c:8842:15: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'AdHocRateSmoothing': treesub.c:8540:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:8632:37: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:8723:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'ReadTreeSeqs': treesub.c:7644:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from baseml.c:129:0: baseml.c: In function 'rell': treesub.c:4784:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4808:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4812:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4815:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'StarDecomposition': treesub.c:3935:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'Perturbation': treesub.c:3642:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'readx': treesub.c:3448:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] baseml.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o codeml codeml.c tools.c -lm In file included from codeml.c:214:0: treesub.c: In function 'ReadSeq': treesub.c:438:10: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:438:10: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:446:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:446:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:467:10: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:467:10: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c: In function 'printPatterns': treesub.c:586:7: warning: passing argument 2 of 'printsmaCodon' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:127:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:590:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:590:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c: In function 'AllPatterns': treesub.c:807:7: warning: passing argument 2 of 'printsmaCodon' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:127:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:811:7: warning: passing argument 2 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c:811:7: warning: passing argument 3 of 'printsma' from incompatible pointer type [enabled by default] In file included from codeml.c:19:0: paml.h:124:5: note: expected 'char **' but argument is of type 'unsigned char **' In file included from codeml.c:214:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] codeml.c: In function 'main': codeml.c:494:10: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat] codeml.c:495:10: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' [-Wformat] codeml.c:496:10: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'size_t' [-Wformat] codeml.c: In function 'Forestry': codeml.c:652:10: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' [-Wformat] codeml.c:654:13: warning: format '%d' expects argument of type 'int', but argument 2 has type 'size_t' [-Wformat] codeml.c: In function 'lfunNSsites_rate': codeml.c:4877:15: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c:4890:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'PairwiseCodon': codeml.c:4243:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'GetOmegaAA': codeml.c:3963:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c:3980:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c:3984:16: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'GetDaa': codeml.c:3839:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from codeml.c:214:0: codeml.c: In function 'DatingHeteroData': treesub.c:8842:15: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'AdHocRateSmoothing': treesub.c:8540:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:8632:37: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:8723:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'ReadTreeSeqs': treesub.c:7644:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from codeml.c:214:0: codeml.c: In function 'rell': treesub.c:4784:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4808:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4812:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:4815:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'StarDecomposition': treesub.c:3935:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'Perturbation': treesub.c:3642:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'readx': treesub.c:3448:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] codeml.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o basemlg basemlg.c tools.c -lm In file included from basemlg.c:80:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] basemlg.c: In function 'readx': treesub.c:3448:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] basemlg.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] basemlg.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] basemlg.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o mcmctree mcmctree.c tools.c -lm In file included from mcmctree.c:178:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] mcmctree.c: In function 'GetMem': mcmctree.c:297:7: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t' [-Wformat] mcmctree.c: In function 'DescriptiveStatisticsSimpleMCMCTREE': mcmctree.c:3198:30: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:3206:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:3209:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c: In function 'Infinitesites': mcmctree.c:1221:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:1223:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:1232:38: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c: In function 'GenerateBlengthGH': mcmctree.c:906:13: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c: In function 'ReadBlengthGH': mcmctree.c:723:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:744:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:746:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c:748:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from mcmctree.c:178:0: mcmctree.c: In function 'ReadTreeSeqs': treesub.c:7644:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from mcmctree.c:178:0: mcmctree.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] mcmctree.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o pamp pamp.c tools.c -lm In file included from pamp.c:65:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] pamp.c: In function 'main': pamp.c:114:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] In file included from pamp.c:65:0: pamp.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] pamp.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] pamp.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o evolver evolver.c tools.c -lm In file included from evolver.c:62:0: treesub.c: In function 'PruneSubTreeN': treesub.c:2793:1: warning: zero-length gnu_printf format string [-Wformat-zero-length] evolver.c: In function 'CladeProbabilities': evolver.c:1390:13: warning: embedded '\0' in format [-Wformat-contains-nul] evolver.c: In function 'Rell2MLtree': evolver.c:1501:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1502:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1504:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'CladeSupport': evolver.c:1423:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1428:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1445:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1464:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'CladeProbabilities': evolver.c:1358:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'Simulate': evolver.c:908:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:908:38: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:913:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:914:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:916:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:917:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:929:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:929:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:953:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:954:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:959:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:960:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:967:26: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:968:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:981:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:981:46: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:983:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:983:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:984:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:984:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:990:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:990:46: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:992:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:992:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1021:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1022:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1028:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1028:44: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1033:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1034:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1051:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1053:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1054:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c:1060:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'GetDaa': evolver.c:627:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'TreeDistances': evolver.c:435:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:438:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:447:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'TreeDistanceDistribution': evolver.c:381:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:384:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'LabelClades': evolver.c:259:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:261:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:264:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:281:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'between_f_and_x': evolver.c:233:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:235:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:237:23: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'main': evolver.c:156:15: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:162:19: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:169:18: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:172:19: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] evolver.c:188:22: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] In file included from evolver.c:62:0: evolver.c: In function 'ReadTreeN': treesub.c:2530:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2563:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2564:55: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2566:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2623:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] evolver.c: In function 'ReadTreeB': treesub.c:2273:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:2288:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o yn00 yn00.c tools.c -lm In file included from yn00.c:69:0: yn00.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] treesub.c:500:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatisticsSimple': tools.c:5432:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5455:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5458:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'DescriptiveStatistics': tools.c:5238:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5247:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5263:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5266:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5282:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5285:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5347:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5351:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c:5384:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c:5388:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'scanfile': tools.c:4971:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'gfopen': tools.c:1106:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] tools.c: In function 'ScanFastaFile': tools.c:953:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] cc -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o chi2 chi2.c -lm chi2.c: In function 'main': chi2.c:64:10: warning: format '%d' expects a matching 'int' argument [-Wformat] chi2.c:64:10: warning: format '%f' expects a matching 'double' argument [-Wformat] chi2.c:54:16: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] make[2]: Leaving directory `/build/buildd/paml-4.5/src' make[1]: Leaving directory `/build/buildd/paml-4.5' dh_auto_test /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/build/buildd/paml-4.5' echo "Executing make install in src directory, instead." Executing make install in src directory, instead. make -C src install make[2]: Entering directory `/build/buildd/paml-4.5/src' if [ ! -d "/build/buildd/paml-4.5/debian/tmp//usr/bin" ]; then mkdir -p "/build/buildd/paml-4.5/debian/tmp//usr/bin"; fi cp baseml codeml basemlg mcmctree pamp evolver yn00 chi2 /build/buildd/paml-4.5/debian/tmp//usr/bin/ make[2]: Leaving directory `/build/buildd/paml-4.5/src' make[1]: Leaving directory `/build/buildd/paml-4.5' dh_install -a dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory `/build/buildd/paml-4.5' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory `/build/buildd/paml-4.5' dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: paml dh_strip debug symbol extraction: packages to act on: paml dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `paml-dbgsym' in `../paml-dbgsym_4.5-1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/build/buildd/paml-4.5' dh_builddeb -- -Z xz INFO: pkgstriptranslations version 116 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: PNG optimization for package paml took 0 s dpkg-deb: warning: 'debian/paml/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `paml' in `../paml_4.5-1_amd64.deb'. make[1]: Leaving directory `/build/buildd/paml-4.5' dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../paml_4.5-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build paml-4.5 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120525-1240 Publishing debug debs. chroot-autobuild/build/buildd/paml_4.5-1_amd64.deb: new debian package, version 2.0. size 947224 bytes: control archive= 935 bytes. 535 bytes, 13 lines control 851 bytes, 13 lines md5sums Package: paml Version: 4.5-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4592 Depends: libc6 (>= 2.14) Section: non-free/science Priority: extra Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. chroot-autobuild/build/buildd/paml_4.5-1_amd64.deb: drwxr-xr-x root/root 0 2012-05-25 12:40 ./ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/bin/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/lib/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 14472 2012-05-25 12:40 ./usr/lib/debian-med/bin/chi2 -rwxr-xr-x root/root 592496 2012-05-25 12:40 ./usr/lib/debian-med/bin/evolver -rwxr-xr-x root/root 637392 2012-05-25 12:40 ./usr/lib/debian-med/bin/pamp -rwxr-xr-x root/root 973648 2012-05-25 12:40 ./usr/lib/debian-med/bin/baseml -rwxr-xr-x root/root 1261328 2012-05-25 12:40 ./usr/lib/debian-med/bin/codeml -rwxr-xr-x root/root 617072 2012-05-25 12:40 ./usr/lib/debian-med/bin/basemlg -rwxr-xr-x root/root 555504 2012-05-25 12:40 ./usr/lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/share/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-25 12:40 ./usr/share/doc/paml/ drwxr-xr-x root/root 0 2012-05-15 09:52 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2012-05-15 09:52 ./usr/share/doc/paml/profile.d/paml -rw-r--r-- root/root 1040 2012-05-22 12:21 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 1295 2012-05-22 12:06 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 646 2011-10-02 05:39 ./usr/share/doc/paml/copyright -rw-r--r-- root/root 675 1999-03-09 13:40 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 982 2005-05-22 10:25 ./usr/share/doc/paml/README.txt lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2012-05-25 12:40 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 paml_4.5-1_amd64.changes: Format: 1.8 Date: Tue, 15 May 2012 11:10:59 +0200 Source: paml Binary: paml paml-doc Architecture: amd64 Version: 4.5-1 Distribution: quantal Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) paml-doc - Documentation for PAML Closes: 661519 Changes: paml (4.5-1) unstable; urgency=low . [ Pjotr Prins ] * Improved long description. . [ Andreas Tille ] * New upstream version * Fixed watch file * debian/control: Standards-Version: 3.9.3 (no changes needed) * debian/rules: remove useless dh-make template * debian/paml.dirs: removed because unneeded * debian/{install,links}: install all binaries to /usr/lib/debian-med/bin and symlink to /usr/bin with the exception of evolver which has a name space conflict. This is renamed to /usr/bin/paml-evolver Closes: #661519 * debian/{paml.docs,paml-doc.docs}: - Adapted to new names - do not duplicate the same files into both packages (paml and paml-doc) * debian/profile.d/paml: Set PATH to find paml executables under their expected names * debian/README.Debian: Document the name space conflict solution * debian/upstream: Citation information * debhelper 9 (control+compat) * debian/patches/hardening.patch: Enable propagation of hardening flags Checksums-Sha1: bd79beb73bd09ad66a14d902b6a8d11c9a076e87 947224 paml_4.5-1_amd64.deb Checksums-Sha256: 211cf46b6352a16bc61a4ddc62b6ac688df6d2ebddc77c1c09a687c4c835d492 947224 paml_4.5-1_amd64.deb Files: f36e029bb6b37c503236760604190a84 947224 non-free/science extra paml_4.5-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120525-1240 Build needed 00:02:39, 36364k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1cc29f56af361d7057dec602d4ee6a85632bfeda'] Scanning for processes to kill in build /home/buildd/build-1cc29f56af361d7057dec602d4ee6a85632bfeda/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1cc29f56af361d7057dec602d4ee6a85632bfeda'] Unmounting chroot for build 1cc29f56af361d7057dec602d4ee6a85632bfeda... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1cc29f56af361d7057dec602d4ee6a85632bfeda'] Removing build 1cc29f56af361d7057dec602d4ee6a85632bfeda