RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher04 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 20 Feb 07:19:11 ntpdate[8557]: adjust time server 10.211.37.1 offset -0.000070 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5603786', '/home/buildd/filecache-default/1418c9e5f0eb143d9f77e4665c5b7c89c42011cc'] Unpacking chroot for build PACKAGEBUILD-5603786 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5603786'] Mounting chroot for build PACKAGEBUILD-5603786 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5603786', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5603786 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5603786', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-5603786 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty Release [58.5 kB] Ign http://archive-team.internal trusty Release.gpg Hit http://archive-team.internal trusty Release Get:4 http://ftpmaster.internal trusty Release [58.5 kB] Ign http://archive-team.internal trusty/main ppc64el Packages/DiffIndex Get:5 http://ftpmaster.internal trusty/main ppc64el Packages [1222 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main ppc64el Packages Get:6 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:7 http://ftpmaster.internal trusty/universe ppc64el Packages [4979 kB] Get:8 http://ftpmaster.internal trusty/multiverse ppc64el Packages [89.3 kB] Get:9 http://ftpmaster.internal trusty/main Translation-en [761 kB] Get:10 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:11 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:12 http://ftpmaster.internal trusty/universe Translation-en [4059 kB] Get:13 http://ftpmaster.internal trusty/main ppc64el Packages [1226 kB] Get:14 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:15 http://ftpmaster.internal trusty/universe ppc64el Packages [5005 kB] Get:16 http://ftpmaster.internal trusty/multiverse ppc64el Packages [107 kB] Get:17 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:18 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:19 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:20 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Fetched 22.6 MB in 19s (1184 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files cpp-4.8 dash e2fslibs e2fsprogs g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base libasn1-8-heimdal libatomic1 libcomerr2 libgcc-4.8-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libroken18-heimdal libss2 libstdc++-4.8-dev libstdc++6 libwind0-heimdal linux-libc-dev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 135 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files ppc64el 7.2ubuntu3 [44.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dash ppc64el 0.5.7-4ubuntu1 [94.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs ppc64el 1.42.9-3ubuntu1 [185 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs ppc64el 1.42.9-3ubuntu1 [662 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 ppc64el 4.8.2-16ubuntu1 [28.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 ppc64el 4.8.2-16ubuntu1 [21.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 ppc64el 4.8.2-16ubuntu1 [6242 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 ppc64el 4.8.2-16ubuntu1 [4809 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 ppc64el 4.8.2-16ubuntu1 [4425 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 ppc64el 4.8.2-16ubuntu1 [7868 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base ppc64el 4.9-20140217-0ubuntu1 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 ppc64el 1:4.9-20140217-0ubuntu1 [29.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev ppc64el 4.8.2-16ubuntu1 [1087 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev ppc64el 4.8.2-16ubuntu1 [245 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base ppc64el 4.8.2-16ubuntu1 [14.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 ppc64el 4.8.2-16ubuntu1 [270 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 ppc64el 1.42.9-3ubuntu1 [62.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libss2 ppc64el 1.42.9-3ubuntu1 [66.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [132 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [90.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [28.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [47.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [97.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [188 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main upstart ppc64el 1.11-0ubuntu4 [338 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev ppc64el 3.13.0-11.31 [753 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 13s (1510 kB/s) (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu3_ppc64el.deb ... Moving obsolete conffile /etc/update-motd.d/99-footer out of the way... Unpacking base-files (7.2ubuntu3) over (7.2ubuntu1) ... Setting up base-files (7.2ubuntu3) ... Removing obsolete conffile /etc/update-motd.d/99-footer ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../dash_0.5.7-4ubuntu1_ppc64el.deb ... Unpacking dash (0.5.7-4ubuntu1) over (0.5.7-3ubuntu1) ... Setting up dash (0.5.7-4ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fslibs:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fsprogs (1.42.9-3ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libitm1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgomp1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../g++-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking g++-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../cpp-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking cpp-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libatomic1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) over (4.9-20140213-0ubuntu2) ... Setting up gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) over (1:4.9-20140213-0ubuntu2) ... Setting up libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgcc-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8-base_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up libstdc++6:ppc64el (4.8.2-16ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libcomerr2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libss2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libss2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libroken18-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libasn1-8-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhcrypto4-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimbase1-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libwind0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhx509-5-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libkrb5-26-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimntlm0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libgssapi3-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../upstart_1.11-0ubuntu4_ppc64el.deb ... Unpacking upstart (1.11-0ubuntu4) over (1.11-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_3.13.0-11.31_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (3.13.0-11.31) over (3.13.0-8.28) ... Setting up libitm1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgomp1:ppc64el (4.8.2-16ubuntu1) ... Setting up cpp-4.8 (4.8.2-16ubuntu1) ... Setting up gcc-4.8 (4.8.2-16ubuntu1) ... Setting up libatomic1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up g++-4.8 (4.8.2-16ubuntu1) ... Setting up libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up upstart (1.11-0ubuntu4) ... Setting up linux-libc-dev:ppc64el (3.13.0-11.31) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5603786', 'ppc64el', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=multiverse', 'paml_4.7-1.dsc'] Initiating build PACKAGEBUILD-5603786 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Automatic build of paml_4.7-1 on fisher04 by sbuild/ppc64el 1.170.5 Build started at 20140220-0719 ****************************************************************************** paml_4.7-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.4-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 47.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 ppc64el 2.1.0-4ubuntu1 [79.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 ppc64el 1:5.14-2ubuntu1 [194 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 ppc64el 1.0.1f-1ubuntu1 [762 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 ppc64el 0.18.3.1-1ubuntu2 [6748 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 ppc64el 2.39.90-0ubuntu1 [985 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 ppc64el 1.2.6-2 [22.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 ppc64el 2.9.1+dfsg1-3ubuntu3 [601 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main groff-base ppc64el 1.22.2-5 [1249 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main man-db ppc64el 2.6.6-1 [847 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 ppc64el 0.6.8-2ubuntu1 [75.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 ppc64el 2.4.0-6 [83.9 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-minimal ppc64el 3.4~rc1-1build1 [440 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-stdlib ppc64el 3.4~rc1-1build1 [1972 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main python3.4-minimal ppc64el 3.4~rc1-1build1 [1147 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3.4 ppc64el 3.4~rc1-1build1 [159 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal ppc64el 3.4~rc1-1 [23.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib ppc64el 3.4~rc1-1 [6976 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main python3 ppc64el 3.4~rc1-1 [8654 B] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main file ppc64el 1:5.14-2ubuntu1 [19.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base ppc64el 0.18.3.1-1ubuntu2 [47.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main gettext ppc64el 0.18.3.1-1ubuntu2 [840 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.0 MB in 12s (891 kB/s) Selecting previously unselected package libexpat1:ppc64el. (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:ppc64el. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.39.90-0ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. 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Unpacking python3.4-minimal (3.4~rc1-1build1) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4~rc1-1build1_ppc64el.deb ... Unpacking python3.4 (3.4~rc1-1build1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4~rc1-1_ppc64el.deb ... Unpacking python3-minimal (3.4~rc1-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../libpython3-stdlib_3.4~rc1-1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.4~rc1-1) ... Selecting previously unselected package python3. Preparing to unpack .../python3_3.4~rc1-1_ppc64el.deb ... Unpacking python3 (3.4~rc1-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_1.20140128-1ubuntu2_all.deb ... Unpacking dh-python (1.20140128-1ubuntu2) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking file (1:5.14-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking gettext-base (0.18.3.1-1ubuntu2) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking gettext (0.18.3.1-1ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package apparmor-easyprof. Preparing to unpack .../apparmor-easyprof_2.8.0-0ubuntu38_all.deb ... Unpacking apparmor-easyprof (2.8.0-0ubuntu38) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.0-0ubuntu38_all.deb ... Unpacking dh-apparmor (2.8.0-0ubuntu38) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Setting up libexpat1:ppc64el (2.1.0-4ubuntu1) ... Setting up libmagic1:ppc64el (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Setting up libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:ppc64el (1.2.6-2) ... Setting up libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-2ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.0-6) ... Setting up libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up python3.4-minimal (3.4~rc1-1build1) ... Setting up python3.4 (3.4~rc1-1build1) ... Setting up python3-minimal (3.4~rc1-1) ... Setting up libpython3-stdlib:ppc64el (3.4~rc1-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up python3 (3.4~rc1-1) ... running python rtupdate hooks for python3.4... running python post-rtupdate hooks for python3.4... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131227ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu7 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-16ubuntu1 g++-4.8_4.8.2-16ubuntu1 binutils_2.24-2ubuntu3.1 libstdc++-4.8-dev_4.8.2-16ubuntu1 libstdc++6_4.8.2-16ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Thu Aug 8 20:53:54 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./paml_4.7-1.dsc dpkg-source: info: extracting paml in paml-4.7 dpkg-source: info: unpacking paml_4.7.orig.tar.xz dpkg-source: info: unpacking paml_4.7-1.debian.tar.gz dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-buildpackage: source package paml dpkg-buildpackage: source version 4.7-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build paml-4.7 dpkg-buildpackage: host architecture ppc64el /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/paml-4.7' echo "Cleaning binaries" Cleaning binaries rm -f make[1]: Leaving directory `/build/buildd/paml-4.7' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/paml-4.7' echo "Executing make all in src directory, instead." Executing make all in src directory, instead. make -C src all make[2]: Entering directory `/build/buildd/paml-4.7/src' cc -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -O4 -funroll-loops -fomit-frame-pointer -finline-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -o baseml baseml.c tools.c -lm In file included from baseml.c:129:0: treesub.c: In function 'ReadSeq': treesub.c:251:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^ treesub.c:284:40: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ treesub.c: In function 'ReadTreeB': treesub.c:2350:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^ treesub.c:2365:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^ treesub.c: In function 'ReadTreeN': treesub.c:2610:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf",&nodes[inodeb].branch); ^ treesub.c:2643:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='#' || ch=='<') { *haslabel=1; fscanf(ftree, "%lf", &nodes[inodeb].label); } ^ treesub.c:2644:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^ treesub.c:2646:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^ treesub.c:2707:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^ treesub.c: In function 'readx': treesub.c:3538:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^ treesub.c: In function 'Perturbation': treesub.c:3732:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^ treesub.c: In function 'StarDecomposition': treesub.c:4025:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^ treesub.c: In function 'rell': treesub.c:4875:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf,"%d%d%d", &ntree0, &ls0, & npatt0); ^ treesub.c:4899:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^ treesub.c:4903:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (flnf, "%d%d%lf", &j, &k, &y); ^ treesub.c:4906:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,flnf); ^ In file included from baseml.c:129:0: treesub.c: In function 'ReadTreeSeqs': treesub.c:7743:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^ treesub.c: In function 'AdHocRateSmoothing': treesub.c:8638:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1,"%lf",&x[i]); ^ treesub.c:8730:37: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(i=0; i9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ treesub.c: In function 'ReadTreeB': treesub.c:2350:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^ treesub.c:2365:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^ treesub.c: In function 'ReadTreeN': treesub.c:2610:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf",&nodes[inodeb].branch); ^ treesub.c:2643:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='#' || ch=='<') { *haslabel=1; fscanf(ftree, "%lf", &nodes[inodeb].label); } ^ treesub.c:2644:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^ treesub.c:2646:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^ treesub.c:2707:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^ treesub.c: In function 'readx': treesub.c:3538:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^ treesub.c: In function 'Perturbation': treesub.c:3732:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^ treesub.c: In function 'StarDecomposition': treesub.c:4025:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^ treesub.c: In function 'rell': treesub.c:4875:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf,"%d%d%d", &ntree0, &ls0, & npatt0); ^ treesub.c:4899:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^ treesub.c:4903:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (flnf, "%d%d%lf", &j, &k, &y); ^ treesub.c:4906:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,flnf); ^ In file included from codeml.c:216:0: treesub.c: In function 'ReadTreeSeqs': treesub.c:7743:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^ treesub.c: In function 'AdHocRateSmoothing': treesub.c:8638:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1,"%lf",&x[i]); ^ treesub.c:8730:37: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(i=0; i9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ treesub.c: In function 'ReadTreeB': treesub.c:2350:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^ treesub.c:2365:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^ treesub.c: In function 'ReadTreeN': treesub.c:2610:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf",&nodes[inodeb].branch); ^ treesub.c:2643:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='#' || ch=='<') { *haslabel=1; fscanf(ftree, "%lf", &nodes[inodeb].label); } ^ treesub.c:2644:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^ treesub.c:2646:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^ treesub.c:2707:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^ treesub.c: In function 'readx': treesub.c:3538:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^ tools.c: In function 'gfopen': tools.c:1127:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^ tools.c: In function 'scanfile': tools.c:4913:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ tools.c: In function 'DescriptiveStatistics': tools.c:5200:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^ tools.c:5209:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5225:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5228:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5244:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5247:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(j=0; j9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ treesub.c: In function 'ReadTreeB': treesub.c:2350:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^ treesub.c:2365:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^ treesub.c: In function 'ReadTreeN': treesub.c:2610:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf",&nodes[inodeb].branch); ^ treesub.c:2643:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='#' || ch=='<') { *haslabel=1; fscanf(ftree, "%lf", &nodes[inodeb].label); } ^ treesub.c:2644:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^ treesub.c:2646:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^ treesub.c:2707:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^ In file included from mcmctree.c:183:0: treesub.c: In function 'ReadTreeSeqs': treesub.c:7743:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^ mcmctree.c: In function 'ReadBlengthGH': mcmctree.c:733:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^ mcmctree.c:754:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^ mcmctree.c:756:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^ mcmctree.c:758:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^ mcmctree.c: In function 'GenerateBlengthGH': mcmctree.c:916:13: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system(line); ^ mcmctree.c: In function 'Infinitesites': mcmctree.c:1240:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fdin, "%d", &i); ^ mcmctree.c:1251:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fdin, "%lf", &FixedDs[i]); ^ mcmctree.c: In function 'DescriptiveStatisticsSimpleMCMCTREE': mcmctree.c:3428:30: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(j=0;j9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ treesub.c: In function 'ReadTreeB': treesub.c:2350:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^ treesub.c:2365:21: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^ treesub.c: In function 'ReadTreeN': treesub.c:2610:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf",&nodes[inodeb].branch); ^ treesub.c:2643:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='#' || ch=='<') { *haslabel=1; fscanf(ftree, "%lf", &nodes[inodeb].label); } ^ treesub.c:2644:57: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^ treesub.c:2646:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^ treesub.c:2707:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^ pamp.c: In function 'main': pamp.c:115:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^ tools.c: In function 'gfopen': tools.c:1127:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^ tools.c: In function 'scanfile': tools.c:4913:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ tools.c: In function 'DescriptiveStatistics': tools.c:5200:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^ tools.c:5209:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5225:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5228:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5244:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5247:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(j=0; j100) error2("too many classes"); ^ evolver.c:238:23: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] FOR(i,n-1) scanf("%lf",&x[i]); ^ evolver.c: In function 'LabelClades': evolver.c:260:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^ evolver.c:262:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf ("%d", &unrooted); ^ evolver.c:265:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &j); ^ evolver.c:282:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", key); ^ evolver.c: In function 'TreeDistanceDistribution': evolver.c:382:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^ evolver.c:385:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &ntree); ^ evolver.c: In function 'TreeDistances': evolver.c:436:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^ evolver.c:439:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &ntree); ^ evolver.c:448:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &k); ^ evolver.c: In function 'GetDaa': evolver.c:628:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*n+j]); ^ evolver.c: In function 'Simulate': evolver.c:909:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &format); fgets(line, lline, fin); ^ evolver.c:909:38: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &format); fgets(line, lline, fin); ^ evolver.c:914:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%d", &i); ^ evolver.c:915:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:917:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%d%d%d", &com.ns, &com.ls, &nr); ^ evolver.c:918:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:930:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf",&tlength); fgets(line, lline, fin); ^ evolver.c:930:42: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf",&tlength); fgets(line, lline, fin); ^ evolver.c:954:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^ evolver.c:955:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:960:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.model); ^ evolver.c:961:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:968:26: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] FOR(i,nrate) fscanf(fin,"%lf",&Qrates[i]); ^ evolver.c:969:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:982:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d", &com.ncatG); fgets(line, lline, fin); ^ evolver.c:982:47: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d", &com.ncatG); fgets(line, lline, fin); ^ evolver.c:984:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line, lline, fin); ^ evolver.c:984:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line, lline, fin); ^ evolver.c:985:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.rK[i]); fgets(line, lline, fin); ^ evolver.c:985:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.rK[i]); fgets(line, lline, fin); ^ evolver.c:991:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.ncatG); fgets(line, lline, fin); ^ evolver.c:991:46: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.ncatG); fgets(line, lline, fin); ^ evolver.c:993:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line,lline,fin); ^ evolver.c:993:66: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line,lline,fin); ^ evolver.c:1022:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf",&com.omega); ^ evolver.c:1023:15: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:1029:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^ evolver.c:1029:46: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^ evolver.c:1034:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf%d", &com.alpha, &com.ncatG); ^ evolver.c:1035:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:1051:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.model); ^ evolver.c:1053:33: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] if(com.model>=2) { fscanf(fin,"%s",com.daafile); GetDaa(NULL,com.daa); } ^ evolver.c:1054:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ evolver.c:1061:43: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(k=0; k9) fscanf(fseq,"%d", &ch); ^ treesub.c:508:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^ tools.c: In function 'gfopen': tools.c:1127:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^ tools.c: In function 'scanfile': tools.c:4913:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^ tools.c: In function 'DescriptiveStatistics': tools.c:5200:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^ tools.c:5209:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5225:24: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5228:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &x[j]); ^ tools.c:5244:27: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] if(ReadHeader) fgets(line, lline, fin); ^ tools.c:5247:35: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] for(j=0; j= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `paml-dbgsym' in `../paml-dbgsym_4.7-1_ppc64el.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/build/buildd/paml-4.7' dh_builddeb -- -Z xz INFO: pkgstriptranslations version 119 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: PNG optimization for package paml took 0 s dpkg-deb: warning: 'debian/paml/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `paml' in `../paml_4.7-1_ppc64el.deb'. make[1]: Leaving directory `/build/buildd/paml-4.7' dpkg-genchanges -B -mUbuntu Build Daemon >../paml_4.7-1_ppc64el.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build paml-4.7 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140220-0723 Publishing debug debs. chroot-autobuild/build/buildd/paml_4.7-1_ppc64el.deb: new debian package, version 2.0. size 904140 bytes: control archive=935 bytes. 537 bytes, 13 lines control 851 bytes, 13 lines md5sums Package: paml Version: 4.7-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3683 Depends: libc6 (>= 2.17) Section: non-free/science Priority: extra Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. chroot-autobuild/build/buildd/paml_4.7-1_ppc64el.deb: drwxr-xr-x root/root 0 2014-02-20 07:22 ./ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/bin/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/lib/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 487560 2014-02-20 07:22 ./usr/lib/debian-med/bin/basemlg -rwxr-xr-x root/root 430072 2014-02-20 07:22 ./usr/lib/debian-med/bin/yn00 -rwxr-xr-x root/root 507800 2014-02-20 07:22 ./usr/lib/debian-med/bin/pamp -rwxr-xr-x root/root 1034048 2014-02-20 07:22 ./usr/lib/debian-med/bin/codeml -rwxr-xr-x root/root 15024 2014-02-20 07:22 ./usr/lib/debian-med/bin/chi2 -rwxr-xr-x root/root 470968 2014-02-20 07:22 ./usr/lib/debian-med/bin/evolver -rwxr-xr-x root/root 774680 2014-02-20 07:22 ./usr/lib/debian-med/bin/baseml drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/share/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-20 07:22 ./usr/share/doc/paml/ -rw-r--r-- root/root 738 2013-08-08 16:19 ./usr/share/doc/paml/copyright -rw-r--r-- root/root 982 2005-05-22 06:25 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1139 2013-08-08 16:39 ./usr/share/doc/paml/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-15 05:52 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2012-05-15 05:52 ./usr/share/doc/paml/profile.d/paml -rw-r--r-- root/root 1295 2012-05-22 08:06 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 675 1999-03-09 08:40 ./usr/share/doc/paml/GeneticCode.txt.gz lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2014-02-20 07:22 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml paml_4.7-1_ppc64el.changes: Format: 1.8 Date: Thu, 08 Aug 2013 22:07:27 +0200 Source: paml Binary: paml paml-doc Architecture: ppc64el Version: 4.7-1 Distribution: trusty Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) paml-doc - Documentation for PAML Changes: paml (4.7-1) unstable; urgency=low . * New upstream version * debian/control: - cme fix dpkg-control - use anonscm in Vcs fields * debian/rules: provide get-orig-source target to make use of new uscan to remove windows binaries Checksums-Sha1: 1668d3aaf6658122dfad234836af83d56459cc60 904140 paml_4.7-1_ppc64el.deb Checksums-Sha256: 894eee9751f706983718b31bb842c406ec606b8d967336154fcee4916e754bbd 904140 paml_4.7-1_ppc64el.deb Files: a344bead7abcdd608a6a3a766cdeba5b 904140 non-free/science extra paml_4.7-1_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140220-0723 Build needed 00:02:47, 36076k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5603786'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5603786/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5603786'] Unmounting chroot for build PACKAGEBUILD-5603786... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5603786'] Removing build PACKAGEBUILD-5603786