RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-031 4.4.0-75-generic #96-Ubuntu SMP Thu Apr 20 09:56:48 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_142 python-lpbuildd_142 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.11. Syncing the system clock with the buildd NTP service... 30 Apr 05:15:08 ntpdate[1808]: adjust time server 10.211.37.1 offset 0.000267 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12499231', '/home/buildd/filecache-default/393420d2b09d3fd212076c1e7bb21902ac116e2c'] Unpacking chroot for build PACKAGEBUILD-12499231 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12499231'] Mounting chroot for build PACKAGEBUILD-12499231 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12499231', 'deb http://ftpmaster.internal/ubuntu artful main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu artful-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-12499231 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12499231', 'arm64'] Updating debian chroot for build PACKAGEBUILD-12499231 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main arm64 Packages [1138 kB] Get:6 http://ftpmaster.internal/ubuntu artful/universe arm64 Packages [7870 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4683 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 Packages [70.7 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [36.1 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/universe arm64 Packages [202 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [135 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/multiverse arm64 Packages [2852 B] Get:13 http://ftpmaster.internal/ubuntu artful-proposed/multiverse Translation-en [2552 B] Fetched 14.6 MB in 4s (3007 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: advancecomp debianutils libapparmor1 libsystemd0 libudev1 libusb-0.1-4 systemd systemd-sysv 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2640 kB of archives. After this operation, 487 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 debianutils arm64 4.8.1.1 [84.8 kB] Get:2 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libapparmor1 arm64 2.11.0-2ubuntu5 [26.9 kB] Get:3 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 systemd arm64 233-5ubuntu1 [2111 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libsystemd0 arm64 233-5ubuntu1 [172 kB] Get:5 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 systemd-sysv arm64 233-5ubuntu1 [13.7 kB] Get:6 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libudev1 arm64 233-5ubuntu1 [48.4 kB] Get:7 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 advancecomp arm64 1.23-1 [169 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libusb-0.1-4 arm64 2:0.1.12-31 [15.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2640 kB in 0s (26.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12350 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1.1_arm64.deb ... Unpacking debianutils (4.8.1.1) over (4.8.1) ... Setting up debianutils (4.8.1.1) ... (Reading database ... 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Unpacking systemd (233-5ubuntu1) over (232-21ubuntu3) ... dpkg: warning: unable to delete old directory '/etc/dbus-1/system.d': Directory not empty dpkg: warning: unable to delete old directory '/etc/dbus-1': Directory not empty Preparing to unpack .../libsystemd0_233-5ubuntu1_arm64.deb ... Unpacking libsystemd0:arm64 (233-5ubuntu1) over (232-21ubuntu3) ... Setting up libsystemd0:arm64 (233-5ubuntu1) ... Setting up libapparmor1:arm64 (2.11.0-2ubuntu5) ... Setting up systemd (233-5ubuntu1) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12376 files and directories currently installed.) Preparing to unpack .../systemd-sysv_233-5ubuntu1_arm64.deb ... Unpacking systemd-sysv (233-5ubuntu1) over (232-21ubuntu3) ... Preparing to unpack .../libudev1_233-5ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (233-5ubuntu1) over (232-21ubuntu3) ... Setting up libudev1:arm64 (233-5ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12376 files and directories currently installed.) Preparing to unpack .../advancecomp_1.23-1_arm64.deb ... Unpacking advancecomp (1.23-1) over (1.20-1) ... Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-31_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-31) over (2:0.1.12-30) ... Setting up systemd-sysv (233-5ubuntu1) ... Setting up advancecomp (1.23-1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-31) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12499231', 'arm64', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=artful-proposed', '--purge=never', '--nolog', 'paml_4.9e+dfsg-1.dsc'] Initiating build PACKAGEBUILD-12499231 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-75-generic #96-Ubuntu SMP Thu Apr 20 09:56:48 UTC 2017 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-031.buildd +==============================================================================+ | paml 4.9e+dfsg-1 (arm64) 30 Apr 2017 05:15 | +==============================================================================+ Package: paml Version: 4.9e+dfsg-1 Source Version: 4.9e+dfsg-1 Distribution: artful-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/paml-kZPiQ_/paml-4.9e+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/paml-kZPiQ_' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12499231/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paml_4.9e+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ByOBHZ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ByOBHZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ByOBHZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ByOBHZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ByOBHZ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ByOBHZ/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (148 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ByOBHZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12376 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9) Filtered Build-Depends: debhelper (>= 9) dpkg-deb: building package 'sbuild-build-depends-paml-dummy' in '/<>/resolver-uUSEia/apt_archive/sbuild-build-depends-paml-dummy.deb'. Ign:1 copy:/<>/resolver-uUSEia/apt_archive ./ InRelease Get:2 copy:/<>/resolver-uUSEia/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-uUSEia/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-uUSEia/apt_archive ./ Sources [206 B] Get:5 copy:/<>/resolver-uUSEia/apt_archive ./ Packages [525 B] Fetched 2850 B in 0s (151 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install paml build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-paml-dummy 0 upgraded, 30 newly installed, 1 to remove and 0 not upgraded. Need to get 15.6 MB of archives. After this operation, 60.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-uUSEia/apt_archive ./ sbuild-build-depends-paml-dummy 0.invalid.0 [778 B] Get:2 http://ftpmaster.internal/ubuntu artful/main arm64 groff-base arm64 1.22.3-9 [1129 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main arm64 libbsd0 arm64 0.8.3-1 [36.7 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main arm64 bsdmainutils arm64 9.0.12ubuntu1 [170 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main arm64 libpipeline1 arm64 1.4.1-2 [21.9 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main arm64 man-db arm64 2.7.6.1-2 [871 kB] Get:7 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libmagic-mgc arm64 1:5.30-1 [181 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libmagic1 arm64 1:5.30-1 [60.6 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 file arm64 1:5.30-1 [21.6 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main arm64 gettext-base arm64 0.19.8.1-2ubuntu1 [45.7 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main arm64 libglib2.0-0 arm64 2.52.0-1 [954 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 libicu57 arm64 57.1-6 [7538 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main arm64 libxml2 arm64 2.9.4+dfsg1-2.2 [568 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main arm64 libsigsegv2 arm64 2.10-5 [13.3 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main arm64 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main arm64 autotools-dev all 20161112.1 [39.5 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main arm64 automake all 1:1.15-5ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main arm64 autopoint all 0.19.8.1-2ubuntu1 [411 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main arm64 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu artful-proposed/main arm64 dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main arm64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main arm64 libfile-stripnondeterminism-perl all 0.032-1 [12.9 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main arm64 dh-strip-nondeterminism all 0.032-1 [4894 B] Get:26 http://ftpmaster.internal/ubuntu artful/main arm64 libcroco3 arm64 0.6.11-3 [66.1 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main arm64 gettext arm64 0.19.8.1-2ubuntu1 [1022 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main arm64 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main arm64 debhelper all 10.2.5ubuntu2 [870 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.6 MB in 0s (30.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12376 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12367 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_arm64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.8.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.4.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_arm64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.30-1_arm64.deb ... Unpacking libmagic-mgc (1:5.30-1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../06-libmagic1_1%3a5.30-1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.30-1) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.30-1_arm64.deb ... Unpacking file (1:5.30-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-2ubuntu1_arm64.deb ... Unpacking gettext-base (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../09-libglib2.0-0_2.52.0-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.52.0-1) ... Selecting previously unselected package libicu57:arm64. Preparing to unpack .../10-libicu57_57.1-6_arm64.deb ... Unpacking libicu57:arm64 (57.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-2.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-2.2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../12-libsigsegv2_2.10-5_arm64.deb ... Unpacking libsigsegv2:arm64 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-1_arm64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.15-5ubuntu1_all.deb ... Unpacking automake (1:1.15-5ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.19.8.1-2ubuntu1_all.deb ... Unpacking autopoint (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_14_all.deb ... Unpacking dh-autoreconf (14) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_0.032-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.032-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../22-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_0.032-1_all.deb ... Unpacking dh-strip-nondeterminism (0.032-1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../24-libcroco3_0.6.11-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.11-3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-2ubuntu1_arm64.deb ... Unpacking gettext (0.19.8.1-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_10.2.5ubuntu2_all.deb ... Unpacking debhelper (10.2.5ubuntu2) ... Selecting previously unselected package sbuild-build-depends-paml-dummy. Preparing to unpack .../29-sbuild-build-depends-paml-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-paml-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.10-5) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:arm64 (2.52.0-1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libpipeline1:arm64 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:arm64 (57.1-6) ... Setting up libbsd0:arm64 (0.8.3-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-2.2) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:arm64 (1:5.30-1) ... Setting up libcroco3:arm64 (0.6.11-3) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.032-1) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.032-1) ... Setting up debhelper (10.2.5ubuntu2) ... Setting up sbuild-build-depends-paml-dummy (0.invalid.0) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14192 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-75-generic arm64 (aarch64) Toolchain package versions: binutils_2.28-4ubuntu1 dpkg-dev_1.18.23ubuntu4 g++-6_6.3.0-14ubuntu3 gcc-6_6.3.0-14ubuntu3 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-14ubuntu3 libstdc++6_6.3.0-14ubuntu3 linux-libc-dev_4.10.0-20.22 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4.1ubuntu2 apt-transport-https_1.4.1ubuntu2 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-2ubuntu1 binutils_2.28-4ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-14ubuntu3 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.2.5ubuntu2 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.032-1 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu5 dpkg_1.18.23ubuntu4 dpkg-dev_1.18.23ubuntu4 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20161106-2 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-14ubuntu3 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-14ubuntu3 gcc-6-base_6.3.0-14ubuntu3 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.47 init-system-helpers_1.47 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu5 libapt-pkg5.0_1.4.1ubuntu2 libarchive-zip-perl_1.59-1 libasan3_6.3.0-14ubuntu3 libasn1-8-heimdal_7.1.0+dfsg-9ubuntu1 libassuan0_2.4.3-2 libatomic1_6.3.0-14ubuntu3 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-14ubuntu3 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu5 libdpkg-perl_1.18.23ubuntu4 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.032-1 libgcc-6-dev_6.3.0-14ubuntu3 libgcc1_1:6.3.0-14ubuntu3 libgcrypt20_1.7.6-1 libgdbm3_1.8.3-14 libglib2.0-0_2.52.0-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.6-4ubuntu4 libgomp1_6.3.0-14ubuntu3 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-9ubuntu1 libhcrypto4-heimdal_7.1.0+dfsg-9ubuntu1 libheimbase1-heimdal_7.1.0+dfsg-9ubuntu1 libheimntlm0-heimdal_7.1.0+dfsg-9ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-9ubuntu1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_6.3.0-14ubuntu3 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-9ubuntu1 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-4ubuntu1 libldap-common_2.4.44+dfsg-4ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 libperl5.24_5.24.1-2ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-2 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-9ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-3 libss2_1.43.4-2 libssl1.0.0_1.0.2g-1ubuntu12 libstdc++-6-dev_6.3.0-14ubuntu3 libstdc++6_6.3.0-14ubuntu3 libsystemd0_233-5ubuntu1 libtasn1-6_4.10-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.3.0-14ubuntu3 libudev1_233-5ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_7.1.0+dfsg-9ubuntu1 libxml2_2.9.4+dfsg1-2.2 linux-libc-dev_4.10.0-20.22 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu12 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1build1 perl_5.24.1-2ubuntu1 perl-base_5.24.1-2ubuntu1 perl-modules-5.24_5.24.1-2ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-paml-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-5ubuntu1 systemd-sysv_233-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-1 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Mar 17 20:33:01 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./paml_4.9e+dfsg-1.dsc dpkg-source: info: extracting paml in paml-4.9e+dfsg dpkg-source: info: unpacking paml_4.9e+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.9e+dfsg-1.debian.tar.xz dpkg-source: info: applying fix_format_security.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying add_clean_target.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/paml-4.9e+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/paml-4.9e+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.9e+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build paml-4.9e+dfsg dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=src dh_testdir -O--sourcedirectory=src dh_auto_clean -O--sourcedirectory=src make -j1 clean make[1]: Entering directory '/<>/paml-4.9e+dfsg/src' rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites make[1]: Leaving directory '/<>/paml-4.9e+dfsg/src' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_testdir -a -O--sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src make -j1 make[1]: Entering directory '/<>/paml-4.9e+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from baseml.c:128:0: treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3922:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4490:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4783:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5633:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf,"%d%d%d", &ntree0, &ls0, & npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5657:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5661:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5664:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,flnf); ^~~~~~~~~~~~~~~~~~~~~~ In file included from baseml.c:128:0: treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8509:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9367:17: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1,"%lf",&x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9459:33: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for(i=0; i>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now codeml.c: In function ‘main’: codeml.c:520:22: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("\n%9u bytes for distance",com.ns*(com.ns-1)/2*sizeof(double)); ^ codeml.c:521:22: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("\n%9u bytes for conP\n", com.sconP); ^ codeml.c:522:40: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf ("%9u bytes for fhK\n%9u bytes for space\n", s2, com.sspace); ^ codeml.c: In function ‘Forestry’: codeml.c:678:41: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf ("\nspace adjusted to %9u bytes\n",com.sspace); ^ codeml.c:680:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("\ntrying to get %d bytes for ming2", com.sspace); ^ In file included from codeml.c:230:0: treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3922:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4490:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4783:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5633:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf,"%d%d%d", &ntree0, &ls0, & npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5657:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5661:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5664:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,flnf); ^~~~~~~~~~~~~~~~~~~~~~ In file included from codeml.c:230:0: treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8509:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9367:17: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1,"%lf",&x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9459:33: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for(i=0; i>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o basemlg basemlg.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:840:27: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout,com.spname,com.z,com.ns,com.ls,com.ls,gap,com.seqtype,0,0,NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c:848:23: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout,com.spname,com.z,com.ns,com.ls,com.ls,gap,com.seqtype,0,0,NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘printPatterns’: treesub.c:1062:23: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout,com.spname,com.z,com.ns, com.npatt,com.npatt, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘AllPatterns’: treesub.c:1292:23: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout,com.spname,com.z,com.ns, com.ls, com.ls, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3922:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials,"%lf",&xin[i=0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1146:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5292:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5608:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5620:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o mcmctree mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:190:0: treesub.c: In function ‘ReadMorphology’: treesub.c:441:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:444:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:190:0: treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8509:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:832:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:853:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:860:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:862:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1020:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1375:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1386:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3670:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:190:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:583:42: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for(i=0;i<3;i++) com.lgene[i]=com.ls/3; ~~~~~~~~~~~~^~~~~~~~~ treesub.c:583:13: note: within this loop for(i=0;i<3;i++) com.lgene[i]=com.ls/3; ^~~ tools.c: In function ‘gfopen’: tools.c:1146:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5292:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5608:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5620:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:190:0: treesub.c: In function ‘ReadMorphology’: treesub.c:441:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:444:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:190:0: treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8509:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:832:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:853:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:860:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:862:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1020:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1375:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1386:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3670:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:190:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:583:42: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for(i=0;i<3;i++) com.lgene[i]=com.ls/3; ~~~~~~~~~~~~^~~~~~~~~ treesub.c:583:13: note: within this loop for(i=0;i<3;i++) com.lgene[i]=com.ls/3; ^~~ tools.c: In function ‘gfopen’: tools.c:1146:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5292:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5608:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5620:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o pamp pamp.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from pamp.c:66:0: treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ pamp.c: In function ‘main’: pamp.c:115:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1146:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5292:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5608:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5620:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o evolver evolver.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1298:37: warning: embedded ‘\0’ in format [-Wformat-contains-nul] sscanf(p+com.ns, "%lf%lf\0", &t, &Pclade[i*nmbfiles+k]); ^ In file included from evolver.c:66:0: treesub.c: In function ‘ReadTreeB’: treesub.c:2727:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2742:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if(popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:2988:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3034:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3036:53: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch=='$') { *haslabel=1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3038:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree,"%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘GetNSfromTreeFile’: treesub.c:4115:35: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (c == ':') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4116:35: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if(c == '#') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘CladeSupport’: treesub.c:4310:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &i, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4335:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ft); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:4355:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &s, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘main’: evolver.c:150:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &option); ^~~~~~~~~~~~~~~~~~~~ evolver.c:156:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d", &com.ns); ^~~~~~~~~~~~~~~~~~~~~ evolver.c:163:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ntree, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:166:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d", &BD); ^~~~~~~~~~~~~~~~~ evolver.c:186:16: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:208:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s%s", treefile, mastertreefile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘between_f_and_x’: evolver.c:237:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d",&fromf); ^~~~~~~~~~~~~~~~~~ evolver.c:239:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &n); if(n>100) error2("too many classes"); ^~~~~~~~~~~~~~~ evolver.c:241:18: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,n-1) scanf("%lf",&x[i]); ^~~~~~~~~~~~~~~~~~ evolver.c: In function ‘LabelClades’: evolver.c:263:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^~~~~~~~~~~~~~~~~~~ evolver.c:265:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d", &unrooted); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:268:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &j); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:285:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", key); ^~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistanceDistribution’: evolver.c:385:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^~~~~~~~~~~~~~~~~~~ evolver.c:388:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistances’: evolver.c:441:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%s", treef); ^~~~~~~~~~~~~~~~~~~ evolver.c:444:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:453:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &k); ^~~~~~~~~~~~~~~ evolver.c: In function ‘GetDaa’: evolver.c:633:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*n+j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘Simulate’: evolver.c:803:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &format); ^~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:804:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:808:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ evolver.c:809:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:811:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%d%d%d", &com.ns, &com.ls, &nr); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:812:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:824:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:824:39: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:848:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:849:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:854:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d", &com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:855:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:862:20: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,nrate) fscanf(fin,"%lf",&Qrates[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:863:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:876:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:876:42: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:878:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:878:61: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:61: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:887:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line,lline,fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:887:61: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i,com.ncatG) fscanf(fin,"%lf",&com.freqK[i]); fgets(line,lline,fin); ^~~~~~~~~~~~~~~~~~~~~ evolver.c:916:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf",&com.omega); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:917:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:923:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:923:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:928:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%lf%d", &com.alpha, &com.ncatG); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:929:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:945:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin,"%d",&com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:947:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if(com.model>=2) { fscanf(fin,"%s",com.daafile); GetDaa(NULL,com.daa); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:948:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:955:37: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for(k=0; k>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o yn00 yn00.c tools.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now In file included from yn00.c:70:0: treesub.c: In function ‘ReadSeq’: treesub.c:615:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,lline,fseq); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:648:43: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene>9) fscanf(fseq,"%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:927:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1146:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5292:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5608:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n+i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5620:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9e+dfsg=. -specs=/usr/share/dpkg/pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -O3 -o chi2 chi2.c -lm -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/pie-link.specs -Wl,-z,relro -Wl,-z,now chi2.c: In function ‘main’: chi2.c:54:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d%lf", &df, &chi2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9e+dfsg/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/<>/paml-4.9e+dfsg' dh_install set -x ; \ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/aaml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/aaml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/baseml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/baseml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codeml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codeml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codonml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codonml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/mcmctree.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/mcmctree.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/pamp.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/pamp.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/yn00.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/yn00.ctl sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/<>/paml-4.9e+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>/paml-4.9e+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/<>/paml-4.9e+dfsg' dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/<>/paml-4.9e+dfsg' dh_link mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/<>/paml-4.9e+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms make[1]: Entering directory '/<>/paml-4.9e+dfsg' dh_fixperms find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/paml-4.9e+dfsg' dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dpkg-shlibdeps: warning: tried to merge the same object (ld-linux-aarch64.so.1) twice in a symfile dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 131 pkgstriptranslations: processing paml-dbgsym (in debian/.debhelper/paml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/paml/dbgsym-root/DEBIAN/control, package paml-dbgsym, directory debian/.debhelper/paml/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml-dbgsym' in 'debian/.debhelper/scratch-space/build-paml/paml-dbgsym_4.9e+dfsg-1_arm64.deb'. Renaming paml-dbgsym_4.9e+dfsg-1_arm64.deb to paml-dbgsym_4.9e+dfsg-1_arm64.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml' in '../paml_4.9e+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../paml_4.9e+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build paml-4.9e+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170430-0520 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paml_4.9e+dfsg-1_arm64.changes: ------------------------------- Format: 1.8 Date: Fri, 17 Mar 2017 21:30:29 +0100 Source: paml Binary: paml paml-doc Architecture: arm64 Version: 4.9e+dfsg-1 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) paml-doc - Documentation for PAML Changes: paml (4.9e+dfsg-1) unstable; urgency=medium . * This new upstream version is now covered by a free license and can be released to main Checksums-Sha1: 7f3c20a9bcb5eb6bafafe1f851515b39ae3df23f 1820190 paml-dbgsym_4.9e+dfsg-1_arm64.ddeb 041bccdb13de8378990856837b42633ce731da57 4811 paml_4.9e+dfsg-1_arm64.buildinfo c830ad7e5c718616b9dd70bd4e6c2c5fba5b8164 607122 paml_4.9e+dfsg-1_arm64.deb Checksums-Sha256: c119802597b0d28ecd15730a57d2daeb1d7a6767944d980d1259a59d926774a5 1820190 paml-dbgsym_4.9e+dfsg-1_arm64.ddeb 4fd37058e70ad3afdbd3b3cfb8b4eda25e6546bd0434b462ad6bfa0cf4a9326c 4811 paml_4.9e+dfsg-1_arm64.buildinfo 33bc0ed129638922ac8e81ab7490cc730324f9a39b8b2c7f7255f653d06957dd 607122 paml_4.9e+dfsg-1_arm64.deb Files: 886bed70be3c5a2870eb2d1ca4df5500 1820190 debug extra paml-dbgsym_4.9e+dfsg-1_arm64.ddeb 691a0825b201cdb0675848b945939555 4811 science optional paml_4.9e+dfsg-1_arm64.buildinfo 4eb4a41ca7b9c294e6fc27ab76b81815 607122 science optional paml_4.9e+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paml_4.9e+dfsg-1_arm64.deb -------------------------- new debian package, version 2.0. size 607122 bytes: control archive=2369 bytes. 770 bytes, 16 lines control 3884 bytes, 60 lines md5sums Package: paml Version: 4.9e+dfsg-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2544 Depends: libc6 (>= 2.17) Section: science Priority: optional Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. drwxr-xr-x root/root 0 2017-03-17 20:30 ./ drwxr-xr-x root/root 0 2017-03-17 20:30 ./etc/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./etc/paml/ lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2017-03-17 20:30 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/bin/ lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2017-03-17 20:30 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2017-03-17 20:30 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/paml/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 436416 2017-03-17 20:30 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 259680 2017-03-17 20:30 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 14256 2017-03-17 20:30 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 576896 2017-03-17 20:30 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 243120 2017-03-17 20:30 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 337648 2017-03-17 20:30 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 255312 2017-03-17 20:30 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 222576 2017-03-17 20:30 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/lib/paml/data/ -rw-r--r-- root/root 56 2002-02-16 17:48 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 97 2003-12-12 14:56 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 299 2009-04-04 14:08 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 124 2004-03-23 17:02 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 161 2003-08-06 17:27 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1399 2009-04-04 12:26 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1786 2015-05-02 12:49 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 2033 2015-05-02 12:49 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4276 2012-08-23 10:41 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 493 2017-03-17 20:30 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 6186 1999-03-09 12:40 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 1755 2017-03-17 20:30 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5830 2009-04-04 18:04 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 278 2009-04-04 14:48 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 100 2012-07-02 12:00 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2983 2017-03-17 20:30 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 660 2017-03-17 20:30 ./usr/lib/paml/data/codonml.ctl drwxr-xr-x root/root 0 2017-02-06 21:46 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1850 2009-02-16 12:05 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 10073 2012-01-19 08:22 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1874 2010-08-29 07:32 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2972 2005-08-14 11:22 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5284 2003-04-07 12:52 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1536 1999-04-26 20:08 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1372 1999-04-01 13:23 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1130 1999-04-01 13:23 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1359 1999-04-01 13:23 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1681 2000-09-26 11:06 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2960 2005-08-14 11:24 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 12131 2002-10-29 17:44 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2713 2008-07-09 13:25 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1258 1999-03-17 11:44 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4886 2007-02-16 20:02 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2370 1999-03-17 11:44 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3844 2008-03-04 23:30 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3337 2002-10-29 17:47 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 4124 2001-07-19 02:12 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 993 2016-09-27 13:06 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1299 2017-03-17 20:30 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 240 2017-02-26 11:16 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70466 2005-04-14 01:56 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11708 1999-03-09 12:40 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 374 2017-03-17 20:30 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 1008 2001-12-24 09:48 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 143 2012-07-19 12:16 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 719 2017-03-17 20:30 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/share/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/share/doc/paml/ -rw-r--r-- root/root 675 1999-03-09 12:40 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 898 2017-03-17 20:30 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 1419 2017-03-17 16:15 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1559 2017-03-17 20:30 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 827 2017-03-17 20:30 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2017-03-17 20:30 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2017-03-17 20:30 ./usr/share/doc/paml/profile.d/paml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 25152 Build-Time: 288 Distribution: artful-proposed Host Architecture: arm64 Install-Time: 16 Job: paml_4.9e+dfsg-1.dsc Machine Architecture: arm64 Package: paml Package-Time: 306 Source-Version: 4.9e+dfsg-1 Space: 25152 Status: successful Version: 4.9e+dfsg-1 -------------------------------------------------------------------------------- Finished at 20170430-0520 Build needed 00:05:06, 25152k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12499231'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12499231/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12499231'] Unmounting chroot for build PACKAGEBUILD-12499231... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12499231'] Removing build PACKAGEBUILD-12499231