RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-035 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:30:44 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 16 Feb 17:17:42 ntpdate[1812]: adjust time server 10.211.37.1 offset 0.176186 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-14359926 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 Starting target for build PACKAGEBUILD-14359926 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-14359926 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 Updating target for build PACKAGEBUILD-14359926 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [967 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/restricted armhf Packages [5892 B] Get:8 http://ftpmaster.internal/ubuntu bionic/restricted Translation-en [2380 B] Get:9 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8138 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4923 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/multiverse armhf Packages [129 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/multiverse Translation-en [108 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf Packages [92.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [45.2 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf Packages [169 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [102 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse armhf Packages [4692 B] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse Translation-en [1584 B] Fetched 15.8 MB in 6s (2584 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcom-err2 libcryptsetup12 libext2fs2 libgdbm5 libjson-c3 libmpfr6 libnghttp2-14 libssl1.1 libunistring2 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential coreutils cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 libmount1 libmpc3 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 144 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 59.9 MB of archives. After this operation, 5144 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main armhf perl-modules-5.26 all 5.26.1-4build1 [2760 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf libgdbm5 armhf 1.14.1-3 [23.9 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf libperl5.26 armhf 5.26.1-4build1 [2881 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf perl armhf 5.26.1-4build1 [201 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf perl-base armhf 5.26.1-4build1 [1289 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libc6-dev armhf 2.26-0ubuntu2 [1900 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libc-dev-bin armhf 2.26-0ubuntu2 [60.1 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf linux-libc-dev armhf 4.15.0-10.11 [946 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-8-base armhf 8-20180208-0ubuntu1 [18.1 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc1 armhf 1:8-20180208-0ubuntu1 [36.9 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libc6 armhf 2.26-0ubuntu2 [2212 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf init-system-helpers all 1.51 [37.3 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf base-files armhf 10ubuntu1 [55.9 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf debianutils armhf 4.8.4 [84.5 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf bash armhf 4.4.18-1ubuntu1 [569 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf bsdutils armhf 1:2.30.2-0.1ubuntu2 [55.5 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf coreutils armhf 8.28-1ubuntu1 [1128 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg armhf 1.19.0.5ubuntu1 [1095 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf dash armhf 0.5.8-2.10 [80.4 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libcom-err2 armhf 1.43.9-1 [10.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf libcomerr2 all 1.43.9-1 [7368 B] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libext2fs2 armhf 1.43.9-1 [145 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf e2fslibs all 1.43.9-1 [7368 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf e2fsprogs armhf 1.43.9-1 [479 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf findutils armhf 4.6.0+git+20170828-2 [277 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf hostname armhf 3.20 [10.4 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf login armhf 1:4.5-1ubuntu1 [303 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf libncurses5 armhf 6.1-1ubuntu1 [74.8 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf libtinfo5 armhf 6.1-1ubuntu1 [68.4 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf ncurses-bin armhf 6.1-1ubuntu1 [155 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf libncursesw5 armhf 6.1-1ubuntu1 [95.7 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf sed armhf 4.4-2 [175 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libuuid1 armhf 2.30.2-0.1ubuntu2 [14.6 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf libblkid1 armhf 2.30.2-0.1ubuntu2 [106 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main armhf libsmartcols1 armhf 2.30.2-0.1ubuntu2 [68.9 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf libfdisk1 armhf 2.30.2-0.1ubuntu2 [143 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3 armhf 2:8.39-9 [209 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf libselinux1 armhf 2.7-2build1 [59.1 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libmount1 armhf 2.30.2-0.1ubuntu2 [116 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf fdisk armhf 2.30.2-0.1ubuntu2 [96.4 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main armhf util-linux armhf 2.30.2-0.1ubuntu2 [820 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf base-passwd armhf 3.5.44 [45.9 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main armhf libc-bin armhf 2.26-0ubuntu2 [477 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main armhf ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf sysvinit-utils armhf 2.88dsf-59.10ubuntu1 [17.2 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++6 armhf 8-20180208-0ubuntu1 [349 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libudev1 armhf 237-2ubuntu2 [48.9 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main armhf libapt-pkg5.0 armhf 1.6~alpha7ubuntu1 [725 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main armhf libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:50 http://ftpmaster.internal/ubuntu bionic/main armhf libcap-ng0 armhf 0.7.7-3.1 [9816 B] Get:51 http://ftpmaster.internal/ubuntu bionic/main armhf libaudit1 armhf 1:2.8.2-1ubuntu1 [35.5 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage-common all 2.7-2build1 [6944 B] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage1 armhf 2.7-2build1 [72.1 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main armhf passwd armhf 1:4.5-1ubuntu1 [769 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main armhf debconf all 1.5.65 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main armhf adduser all 3.116ubuntu1 [163 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main armhf libgpg-error0 armhf 1.27-6 [33.6 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main armhf libgcrypt20 armhf 1.8.1-4 [363 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpgv armhf 2.2.4-1ubuntu1 [166 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main armhf ubuntu-keyring all 2018.02.06 [20.7 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libunistring2 armhf 0.9.8-1 [360 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main armhf libgmp10 armhf 2:6.1.2+dfsg-2 [182 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main armhf libnettle6 armhf 3.4-1 [123 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main armhf libhogweed4 armhf 3.4-1 [127 kB] Get:65 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libidn2-0 armhf 2.0.4-1.1build1 [45.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main armhf libffi6 armhf 3.2.1-8 [16.4 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libp11-kit0 armhf 0.23.9-2 [162 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main armhf libtasn1-6 armhf 4.13-2 [31.1 kB] Get:69 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgnutls30 armhf 3.5.17-1ubuntu2 [585 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu3 [29.9 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main armhf apt armhf 1.6~alpha7ubuntu1 [1110 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main armhf libargon2-0 armhf 0~20161029-1.1 [20.4 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main armhf libjson-c3 armhf 0.12.1-1.3 [19.6 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main armhf libdevmapper1.02.1 armhf 2:1.02.145-4.1ubuntu2 [117 kB] Get:75 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcryptsetup12 armhf 2:2.0.1-0ubuntu1 [119 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf libapparmor1 armhf 2.11.0-2ubuntu19 [24.8 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main armhf libcap2 armhf 1:2.25-1.2 [11.7 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf libidn11 armhf 1.33-2.1 [42.7 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main armhf libip4tc0 armhf 1.6.1-2ubuntu2 [17.8 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf libkmod2 armhf 24-1ubuntu3 [34.4 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main armhf mount armhf 2.30.2-0.1ubuntu2 [104 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu1 [28.4 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main armhf procps armhf 2:3.3.12-3ubuntu1 [214 kB] Get:85 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd armhf 237-2ubuntu2 [2726 kB] Get:86 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libsystemd0 armhf 237-2ubuntu2 [186 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main armhf init armhf 1.51 [5864 B] Get:88 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd-sysv armhf 237-2ubuntu2 [12.2 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main armhf libss2 armhf 1.43.9-1 [9384 B] Get:90 http://ftpmaster.internal/ubuntu bionic/main armhf libgomp1 armhf 8-20180208-0ubuntu1 [66.6 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main armhf libmpc3 armhf 1.1.0-1 [33.2 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main armhf libmpfr6 armhf 4.0.1-1 [194 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main armhf g++-7 armhf 7.3.0-3ubuntu1 [6037 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7 armhf 7.3.0-3ubuntu1 [5937 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main armhf cpp-7 armhf 7.3.0-3ubuntu1 [5289 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main armhf libcc1-0 armhf 8-20180208-0ubuntu1 [32.4 kB] Get:97 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libbinutils armhf 2.30-5ubuntu1 [307 kB] Get:98 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils armhf 2.30-5ubuntu1 [3348 B] Get:99 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils-common armhf 2.30-5ubuntu1 [193 kB] Get:100 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.30-5ubuntu1 [2174 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main armhf libatomic1 armhf 8-20180208-0ubuntu1 [7056 B] Get:102 http://ftpmaster.internal/ubuntu bionic/main armhf libasan4 armhf 7.3.0-3ubuntu1 [328 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main armhf libubsan0 armhf 7.3.0-3ubuntu1 [109 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main armhf libcilkrts5 armhf 7.3.0-3ubuntu1 [35.9 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++-7-dev armhf 7.3.0-3ubuntu1 [1505 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc-7-dev armhf 7.3.0-3ubuntu1 [708 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7-base armhf 7.3.0-3ubuntu1 [19.0 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main armhf sensible-utils all 0.0.11 [14.8 kB] Get:109 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main armhf libassuan0 armhf 2.5.1-2 [28.3 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main armhf readline-common all 7.0-3 [52.9 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main armhf libreadline7 armhf 7.0-3 [103 kB] Get:113 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gnupg armhf 2.2.4-1ubuntu1 [249 kB] Get:114 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:115 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpgconf armhf 2.2.4-1ubuntu1 [105 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main armhf pinentry-curses armhf 1.1.0-1 [31.4 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/main armhf libnpth0 armhf 1.5-3 [6632 B] Get:118 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpg-agent armhf 2.2.4-1ubuntu1 [189 kB] Get:119 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gnupg-utils armhf 2.2.4-1ubuntu1 [106 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main armhf libsqlite3-0 armhf 3.22.0-1 [421 kB] Get:121 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpg armhf 2.2.4-1ubuntu1 [409 kB] Get:122 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpg-wks-client armhf 2.2.4-1ubuntu1 [76.8 kB] Get:123 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpg-wks-server armhf 2.2.4-1ubuntu1 [71.8 kB] Get:124 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gpgsm armhf 2.2.4-1ubuntu1 [183 kB] Get:125 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf dirmngr armhf 2.2.4-1ubuntu1 [275 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main armhf dmsetup armhf 2:1.02.145-4.1ubuntu2 [73.8 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main armhf libroken18-heimdal armhf 7.5.0+dfsg-1 [34.1 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-1 [136 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-1 [24.1 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-1 [76.5 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main armhf libwind0-heimdal armhf 7.5.0+dfsg-1 [47.2 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-1 [87.9 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-1 [168 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-1 [13.1 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-1 [78.8 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main armhf libslang2 armhf 2.3.1a-1ubuntu1 [381 kB] Get:139 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libssl1.0.0 armhf 1.0.2n-1ubuntu3 [711 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main armhf libssl1.1 armhf 1.1.0g-2ubuntu1 [912 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main armhf multiarch-support armhf 2.26-0ubuntu2 [6832 B] Get:142 http://ftpmaster.internal/ubuntu bionic/main armhf openssl armhf 1.1.0g-2ubuntu1 [509 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main armhf tzdata all 2018c-1 [188 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main armhf libgssapi-krb5-2 armhf 1.16-2build1 [101 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5-3 armhf 1.16-2build1 [233 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main armhf libk5crypto3 armhf 1.16-2build1 [83.2 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5support0 armhf 1.16-2build1 [27.5 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.2ubuntu1 [8380 B] Get:149 http://ftpmaster.internal/ubuntu bionic/main 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armhf libpsl5 armhf 0.19.1-4build1 [40.4 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main armhf libcurl3-gnutls armhf 7.58.0-2ubuntu1 [181 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main armhf liblockfile-bin armhf 1.14-1.1 [10.9 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main armhf liblockfile1 armhf 1.14-1.1 [5784 B] Get:163 http://ftpmaster.internal/ubuntu bionic/main armhf optipng armhf 0.7.6-1.1 [80.6 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main armhf pkgbinarymangler all 134 [51.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.9 MB in 1s (30.4 MB/s) (Reading database ... 12457 files and directories currently installed.) 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Setting up libreadline7:armhf (7.0-3) ... Setting up libpsl5:armhf (0.19.1-4build1) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up tzdata (2018c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 16 17:18:34 UTC 2018. Universal Time is now: Fri Feb 16 17:18:34 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (237-2ubuntu2) ... Setting up liblockfile1:armhf (1.14-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up linux-libc-dev:armhf (4.15.0-10.11) ... Setting up libmpfr6:armhf (4.0.1-1) ... Setting up advancecomp (2.1-1) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-1) ... Setting up perl-modules-5.26 (5.26.1-4build1) ... Setting up libgdbm5:armhf (1.14.1-3) ... Setting up libkrb5support0:armhf (1.16-2build1) ... Setting up optipng (0.7.6-1.1) ... Setting up gnupg-l10n (2.2.4-1ubuntu1) ... Setting up gcc-7-base:armhf (7.3.0-3ubuntu1) ... Setting up binutils-common:armhf (2.30-5ubuntu1) ... Setting up sensible-utils (0.0.11) ... Setting up patch (2.7.6-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:armhf (5.26.1-4build1) ... Setting up libssl1.1:armhf (1.1.0g-2ubuntu1) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libfakeroot:armhf (1.22-2ubuntu1) ... Setting up openssl (1.1.0g-2ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:armhf (3.22.0-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu2) ... Setting up libmpc3:armhf (1.1.0-1) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libcomerr2 (1.43.9-1) ... Setting up libkeyutils1:armhf (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:armhf (2.26-0ubuntu2) ... Setting up libslang2:armhf (2.3.1a-1ubuntu1) ... Setting up libassuan0:armhf (2.5.1-2) ... Setting up libk5crypto3:armhf (1.16-2build1) ... Setting up pkgbinarymangler (134) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libasan4:armhf (7.3.0-3ubuntu1) ... Setting up libbinutils:armhf (2.30-5ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-3ubuntu1) ... Setting up init (1.51) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libubsan0:armhf (7.3.0-3ubuntu1) ... Setting up gpgconf (2.2.4-1ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-1) ... Setting up binutils-arm-linux-gnueabihf (2.30-5ubuntu1) ... Setting up fakeroot (1.22-2ubuntu1) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libgcc-7-dev:armhf (7.3.0-3ubuntu1) ... Setting up cpp-7 (7.3.0-3ubuntu1) ... Setting up libstdc++-7-dev:armhf (7.3.0-3ubuntu1) ... Setting up perl (5.26.1-4build1) ... Setting up gpgsm (2.2.4-1ubuntu1) ... Setting up gnupg-utils (2.2.4-1ubuntu1) ... Setting up pinentry-curses (1.1.0-1) ... Setting up libkrb5-3:armhf (1.16-2build1) ... Setting up binutils (2.30-5ubuntu1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-1) ... Setting up dirmngr (2.2.4-1ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up gpg (2.2.4-1ubuntu1) ... Setting up gcc-7 (7.3.0-3ubuntu1) ... Setting up g++-7 (7.3.0-3ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu1) ... Setting up gpg-agent (2.2.4-1ubuntu1) ... Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ... Setting up gpg-wks-server (2.2.4-1ubuntu1) ... Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.16-2build1) ... Setting up dpkg-dev (1.19.0.5ubuntu1) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.58.0-2ubuntu1) ... Setting up gnupg (2.2.4-1ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14359926 armhf bionic-proposed -c chroot:build-PACKAGEBUILD-14359926 --arch=armhf --dist=bionic-proposed --nolog paml_4.9g+dfsg-1.dsc Initiating build PACKAGEBUILD-14359926 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:30:44 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-035.buildd +==============================================================================+ | paml 4.9g+dfsg-1 (armhf) 16 Feb 2018 17:18 | +==============================================================================+ Package: paml Version: 4.9g+dfsg-1 Source Version: 4.9g+dfsg-1 Distribution: bionic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/paml-5GR38L/paml-4.9g+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/paml-5GR38L' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14359926/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paml_4.9g+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Ldkm97/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Ldkm97/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ldkm97/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Ldkm97/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ldkm97/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Ldkm97/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (69.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Ldkm97/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (69.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12720 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~) Filtered Build-Depends: debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-paml-dummy' in '/<>/resolver-2OFR1w/apt_archive/sbuild-build-depends-paml-dummy.deb'. Ign:1 copy:/<>/resolver-2OFR1w/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2OFR1w/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2OFR1w/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2OFR1w/apt_archive ./ Sources [208 B] Get:5 copy:/<>/resolver-2OFR1w/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (64.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install paml build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-paml-dummy 0 upgraded, 34 newly installed, 1 to remove and 0 not upgraded. Need to get 16.4 MB of archives. After this operation, 58.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-2OFR1w/apt_archive ./ sbuild-build-depends-paml-dummy 0.invalid.0 [852 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf bsdmainutils armhf 11.1.2ubuntu1 [177 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf man-db armhf 2.8.1-1 [992 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libmagic-mgc armhf 1:5.32-2 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libmagic1 armhf 1:5.32-2 [62.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf file armhf 1:5.32-2 [21.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libglib2.0-0 armhf 2.55.2-1ubuntu1 [1015 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libfreetype6 armhf 2.8.1-0.1ubuntu2 [280 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libgraphite2-3 armhf 1.3.10-8 [65.7 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz0b armhf 1.7.2-1 [206 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libicu-le-hb0 armhf 1.0.3+git161113-4 [12.5 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf libicu60 armhf 60.2-3ubuntu1 [7808 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1 [567 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gettext-base armhf 0.19.8.1-4ubuntu3 [45.6 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf libsigsegv2 armhf 2.12-1 [14.0 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf autoconf all 2.69-11 [322 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf autotools-dev all 20171216.1 [39.7 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf automake all 1:1.15.1-3ubuntu1 [509 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf autopoint all 0.19.8.1-4ubuntu3 [412 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 16 [15.8 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1 [5196 B] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gettext armhf 0.19.8.1-4ubuntu3 [832 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf debhelper all 11.1.4ubuntu1 [900 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.4 MB in 1s (27.0 MB/s) (Reading database ... 12720 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package libbsd0:armhf. (Reading database ... 12711 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu1_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.1-1_armhf.deb ... Unpacking man-db (2.8.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-2_armhf.deb ... Unpacking libmagic-mgc (1:5.32-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../06-libmagic1_1%3a5.32-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.32-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.32-2_armhf.deb ... Unpacking file (1:5.32-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../08-libglib2.0-0_2.55.2-1ubuntu1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.55.2-1ubuntu1) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../09-libfreetype6_2.8.1-0.1ubuntu2_armhf.deb ... Unpacking libfreetype6:armhf (2.8.1-0.1ubuntu2) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../10-libgraphite2-3_1.3.10-8_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.10-8) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../11-libharfbuzz0b_1.7.2-1_armhf.deb ... Unpacking libharfbuzz0b:armhf (1.7.2-1) ... Selecting previously unselected package libicu-le-hb0:armhf. Preparing to unpack .../12-libicu-le-hb0_1.0.3+git161113-4_armhf.deb ... Unpacking libicu-le-hb0:armhf (1.0.3+git161113-4) ... Selecting previously unselected package libicu60:armhf. Preparing to unpack .../13-libicu60_60.2-3ubuntu1_armhf.deb ... Unpacking libicu60:armhf (60.2-3ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../14-libxml2_2.9.4+dfsg1-6.1ubuntu1_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../15-gettext-base_0.19.8.1-4ubuntu3_armhf.deb ... Unpacking gettext-base (0.19.8.1-4ubuntu3) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../16-libsigsegv2_2.12-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-1) ... Selecting previously unselected package m4. Preparing to unpack .../17-m4_1.4.18-1_armhf.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../18-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../19-autotools-dev_20171216.1_all.deb ... Unpacking autotools-dev (20171216.1) ... Selecting previously unselected package automake. Preparing to unpack .../20-automake_1%3a1.15.1-3ubuntu1_all.deb ... Unpacking automake (1:1.15.1-3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../21-autopoint_0.19.8.1-4ubuntu3_all.deb ... Unpacking autopoint (0.19.8.1-4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_16_all.deb ... Unpacking dh-autoreconf (16) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_0.040-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.040-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../26-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../27-dh-strip-nondeterminism_0.040-1_all.deb ... Unpacking dh-strip-nondeterminism (0.040-1) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../28-libcroco3_0.6.12-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-4ubuntu3_armhf.deb ... Unpacking gettext (0.19.8.1-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_11.1.4ubuntu1_all.deb ... Unpacking debhelper (11.1.4ubuntu1) ... Selecting previously unselected package sbuild-build-depends-paml-dummy. Preparing to unpack .../33-sbuild-build-depends-paml-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-paml-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.55.2-1ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-4ubuntu3) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libfreetype6:armhf (2.8.1-0.1ubuntu2) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:armhf (1:5.32-2) ... Setting up libgraphite2-3:armhf (1.3.10-8) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20171216.1) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-4ubuntu3) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libharfbuzz0b:armhf (1.7.2-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up libicu-le-hb0:armhf (1.0.3+git161113-4) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up libicu60:armhf (60.2-3ubuntu1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up gettext (0.19.8.1-4ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.20) ... Setting up debhelper (11.1.4ubuntu1) ... Setting up dh-autoreconf (16) ... Setting up sbuild-build-depends-paml-dummy (0.invalid.0) ... (Reading database ... 14602 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-5ubuntu1 dpkg-dev_1.19.0.5ubuntu1 g++-7_7.3.0-3ubuntu1 gcc-7_7.3.0-3ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.3.0-3ubuntu1 libstdc++6_8-20180208-0ubuntu1 linux-libc-dev_4.15.0-10.11 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6~alpha7ubuntu1 apt-transport-https_1.6~alpha7ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu3 autotools-dev_20171216.1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4.18-1ubuntu1 binutils_2.30-5ubuntu1 binutils-arm-linux-gnueabihf_2.30-5ubuntu1 binutils-common_2.30-5ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.30.2-0.1ubuntu2 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1ubuntu1 cpp_4:7.2.0-1ubuntu1 cpp-7_7.3.0-3ubuntu1 dash_0.5.8-2.10 debconf_1.5.65 debhelper_11.1.4ubuntu1 debianutils_4.8.4 dh-autoreconf_16 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1ubuntu1 dmsetup_2:1.02.145-4.1ubuntu2 dpkg_1.19.0.5ubuntu1 dpkg-dev_1.19.0.5ubuntu1 e2fslibs_1.43.9-1 e2fsprogs_1.43.9-1 fakeroot_1.22-2ubuntu1 fdisk_2.30.2-0.1ubuntu2 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1ubuntu1 g++-7_7.3.0-3ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.3.0-3ubuntu1 gcc-7-base_7.3.0-3ubuntu1 gcc-8-base_8-20180208-0ubuntu1 gettext_0.19.8.1-4ubuntu3 gettext-base_0.19.8.1-4ubuntu3 gnupg_2.2.4-1ubuntu1 gnupg-agent_2.2.4-1ubuntu1 gnupg-l10n_2.2.4-1ubuntu1 gnupg-utils_2.2.4-1ubuntu1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpg-wks-client_2.2.4-1ubuntu1 gpg-wks-server_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgsm_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 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libdpkg-perl_1.19.0.5ubuntu1 libext2fs2_1.43.9-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.30.2-0.1ubuntu2 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libfreetype6_2.8.1-0.1ubuntu2 libgcc-7-dev_7.3.0-3ubuntu1 libgcc1_1:8-20180208-0ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-3 libglib2.0-0_2.55.2-1ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.17-1ubuntu2 libgomp1_8-20180208-0ubuntu1 libgpg-error0_1.27-6 libgraphite2-3_1.3.10-8 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libharfbuzz0b_1.7.2-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu-le-hb0_1.0.3+git161113-4 libicu60_60.2-3ubuntu1 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1build1 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.30.2-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-9 libperl5.26_5.26.1-4build1 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpsl5_0.19.1-4build1 libreadline7_7.0-3 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2build1 libsemanage-common_2.7-2build1 libsemanage1_2.7-2build1 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-1ubuntu1 libsmartcols1_2.30.2-0.1ubuntu2 libsqlite3-0_3.22.0-1 libss2_1.43.9-1 libssl1.0.0_1.0.2n-1ubuntu3 libssl1.1_1.1.0g-2ubuntu1 libstdc++-7-dev_7.3.0-3ubuntu1 libstdc++6_8-20180208-0ubuntu1 libsystemd0_237-2ubuntu2 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libubsan0_7.3.0-3ubuntu1 libudev1_237-2ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libunistring2_0.9.8-1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu2 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 linux-libc-dev_4.15.0-10.11 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.8.1-1 mawk_1.3.3-17ubuntu2 mount_2.30.2-0.1ubuntu2 multiarch-support_2.26-0ubuntu2 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 openssl_1.1.0g-2ubuntu1 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-1 perl_5.26.1-4build1 perl-base_5.26.1-4build1 perl-modules-5.26_5.26.1-4build1 pinentry-curses_1.1.0-1 pkgbinarymangler_134 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-paml-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_237-2ubuntu2 systemd-sysv_237-2ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018c-1 ubuntu-keyring_2018.02.06 util-linux_2.30.2-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Feb 16 11:06:41 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./paml_4.9g+dfsg-1.dsc dpkg-source: info: extracting paml in paml-4.9g+dfsg dpkg-source: info: unpacking paml_4.9g+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.9g+dfsg-1.debian.tar.xz dpkg-source: info: applying hardening.patch dpkg-source: info: applying add_clean_target.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14359926 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14359926 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14359926 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.9g+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build paml-4.9g+dfsg dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 clean make[1]: Entering directory '/<>/paml-4.9g+dfsg/src' rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites make[1]: Leaving directory '/<>/paml-4.9g+dfsg/src' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/paml-4.9g+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o basemlg basemlg.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o mcmctree mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:849:28: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:145:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c:857:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:145:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘printPatterns’: treesub.c:1075:22: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.npatt, com.npatt, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:145:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘AllPatterns’: treesub.c:1331:22: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:145:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:191:0: treesub.c: In function ‘ReadMorphology’: treesub.c:438:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:441:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4003:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from baseml.c:129:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8612:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4003:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4583:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4885:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3684:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5746:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5770:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5776:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5781:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, flnf); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from codeml.c:235:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:8612:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9477:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9575:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9668:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Rj[j]); ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9787:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%d? ", &nu_AHRS, &nbrate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4003:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4583:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4885:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5746:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5770:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5776:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5781:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, flnf); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:191:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:586:50: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ~~~~~~~~~~~~~^~~~~~~~~~~~ treesub.c:586:13: note: within this loop for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ^~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8612:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9477:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9575:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9668:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Rj[j]); ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9787:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%d? ", &nu_AHRS, &nbrate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetDaa’: codeml.c:3902:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*naa + j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetOmegaAA’: codeml.c:4027:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (fin) fscanf(fin, "%d", &com.nOmegaType); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:4043:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~ codeml.c:4047:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, nline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘PairwiseCodon’: codeml.c:4309:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &is, &js); ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘lfunNSsites_rate’: codeml.c:5230:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &continuous); ^~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:5243:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fsites, "%d%s", &it, sitelabel); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3721:48: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 10 and 22 [-Wformat-overflow=] sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~ mcmctree.c:3721:33: note: assuming directive output of 12 bytes sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from paml.h:8, from mcmctree.c:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 14 and 38 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o pamp pamp.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from pamp.c:66:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ pamp.c: In function ‘main’: pamp.c:115:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:191:0: treesub.c: In function ‘ReadMorphology’: treesub.c:438:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:441:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8612:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &sptree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3684:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:191:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:586:50: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ~~~~~~~~~~~~~^~~~~~~~~~~~ treesub.c:586:13: note: within this loop for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ^~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o evolver evolver.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1297:39: warning: embedded ‘\0’ in format [-Wformat-contains-nul] sscanf(p + com.ns, "%lf%lf\0", &t, &Pclade[i*nmbfiles + k]); ^~ In file included from evolver.c:66:0: treesub.c: In function ‘ReadTreeB’: treesub.c:2773:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2788:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3037:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3084:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3086:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3088:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘GetNSfromTreeFile’: treesub.c:4201:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (c == ':') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4202:32: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (c == '#') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘CladeSupport’: treesub.c:4399:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &i, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4424:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ft); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:4446:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &s, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘main’: evolver.c:150:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &option); ^~~~~~~~~~~~~~~~~~~~ evolver.c:156:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &com.ns); ^~~~~~~~~~~~~~~~~~~~ evolver.c:163:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ntree, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:166:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &BD); ^~~~~~~~~~~~~~~~ evolver.c:186:16: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:208:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s%s", treefile, mastertreefile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘between_f_and_x’: evolver.c:237:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &fromf); ^~~~~~~~~~~~~~~~~~~ evolver.c:239:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &n); if (n > 100) error2("too many classes"); ^~~~~~~~~~~~~~~ evolver.c:241:21: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, n - 1) scanf("%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘LabelClades’: evolver.c:263:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:265:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &unrooted); ^~~~~~~~~~~~~~~~~~~~~~ evolver.c:268:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &j); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:285:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", key); ^~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistanceDistribution’: evolver.c:385:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:388:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistances’: evolver.c:441:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:444:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:453:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &k); ^~~~~~~~~~~~~~~ evolver.c: In function ‘GetDaa’: evolver.c:633:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*n + j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘Simulate’: evolver.c:804:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &format); ^~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:805:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:809:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ evolver.c:810:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d%d%d", &com.ns, &com.ls, &nr); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:813:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:825:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:825:39: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:849:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:850:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:855:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:856:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:863:21: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, nrate) fscanf(fin, "%lf", &Qrates[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:864:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:877:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:877:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:880:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:880:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:886:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:886:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:888:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:888:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:919:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.omega); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:920:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:926:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:926:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf%d", &com.alpha, &com.ncatG); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:932:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:948:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:950:29: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.model >= 2) { fscanf(fin, "%s", com.daafile); GetDaa(NULL, com.daa); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:951:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:958:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (k = 0; k < com.ncode; k++) fscanf(fin, "%lf", &com.pi[k]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:965:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:965:40: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1265:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &k); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3721:48: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 10 and 22 [-Wformat-overflow=] sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~ mcmctree.c:3721:33: note: assuming directive output of 12 bytes sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from paml.h:8, from mcmctree.c:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 14 and 38 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o yn00 yn00.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from yn00.c:70:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5667:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5679:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9g+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o chi2 chi2.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now chi2.c: In function ‘main’: chi2.c:54:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d%lf", &df, &chi2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9g+dfsg/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install make[1]: Entering directory '/<>/paml-4.9g+dfsg' dh_install set -x ; \ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/aaml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/aaml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/baseml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/baseml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codeml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codeml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codonml.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/codonml.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/mcmctree.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/mcmctree.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/pamp.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/pamp.ctl + sed -i -e s?\(seqfile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(seqfile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/yn00.ctl + sed -i -e s?\(treefile =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? -e s?\(treefile =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2? debian/paml//usr/lib/paml/data/yn00.ctl sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/<>/paml-4.9g+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>/paml-4.9g+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/<>/paml-4.9g+dfsg' dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/<>/paml-4.9g+dfsg' dh_link mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/<>/paml-4.9g+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms make[1]: Entering directory '/<>/paml-4.9g+dfsg' dh_fixperms find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/paml-4.9g+dfsg' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 134 INFO: pkgstriptranslations version 134 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgstriptranslations: processing paml-dbgsym (in debian/.debhelper/paml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: processing control file: debian/.debhelper/paml/dbgsym-root/DEBIAN/control, package paml-dbgsym, directory debian/.debhelper/paml/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml-dbgsym' in 'debian/.debhelper/scratch-space/build-paml/paml-dbgsym_4.9g+dfsg-1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml' in '../paml_4.9g+dfsg-1_armhf.deb'. Renaming paml-dbgsym_4.9g+dfsg-1_armhf.deb to paml-dbgsym_4.9g+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../paml_4.9g+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build paml-4.9g+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180216-1720 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paml_4.9g+dfsg-1_armhf.changes: ------------------------------- Format: 1.8 Date: Fri, 16 Feb 2018 11:57:07 +0100 Source: paml Binary: paml paml-doc Architecture: armhf Version: 4.9g+dfsg-1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) paml-doc - Documentation for PAML Changes: paml (4.9g+dfsg-1) unstable; urgency=medium . * New upstream version (upstream fixed format security issue) * Standards-Version: 4.1.3 * debhelper 11 * do not parse d/changelog Checksums-Sha1: 16dfe89580f1f06bb8549f884412f05cffa9985a 1723268 paml-dbgsym_4.9g+dfsg-1_armhf.ddeb 6c3f9a1b8e6a879c3bcff024712da00bbdf30798 4973 paml_4.9g+dfsg-1_armhf.buildinfo ce383ad47b1a63a55f0927fc8d309db5a6272e18 599244 paml_4.9g+dfsg-1_armhf.deb Checksums-Sha256: 95ca6663b6212dde5b34263ec640dbd1a33ab267a2719461af32e21132714b64 1723268 paml-dbgsym_4.9g+dfsg-1_armhf.ddeb 13b39f21a2ee8f73ad1c6281bd6b300a4dc001baef07e58e779f0ced61fda70d 4973 paml_4.9g+dfsg-1_armhf.buildinfo 10de8290c9118662136884d4200ee17be24ae160fcea008522f201b77c8ebc4b 599244 paml_4.9g+dfsg-1_armhf.deb Files: 4789b8291c7c6cf7ec611471191b70b6 1723268 debug optional paml-dbgsym_4.9g+dfsg-1_armhf.ddeb f6a28634a46a0cae9347c7f4fac1b8de 4973 science optional paml_4.9g+dfsg-1_armhf.buildinfo 4d15843e2fe200762b445ff5f7bde8e5 599244 science optional paml_4.9g+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paml_4.9g+dfsg-1_armhf.deb -------------------------- new debian package, version 2.0. size 599244 bytes: control archive=2336 bytes. 769 bytes, 16 lines control 3884 bytes, 60 lines md5sums Package: paml Version: 4.9g+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1973 Depends: libc6 (>= 2.7) Section: science Priority: optional Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. drwxr-xr-x root/root 0 2018-02-16 10:57 ./ drwxr-xr-x root/root 0 2018-02-16 10:57 ./etc/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./etc/paml/ lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2018-02-16 10:57 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/bin/ lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2018-02-16 10:57 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2018-02-16 10:57 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/paml/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 320708 2018-02-16 10:57 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 197444 2018-02-16 10:57 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 9636 2018-02-16 10:57 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 436340 2018-02-16 10:57 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 185076 2018-02-16 10:57 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 246700 2018-02-16 10:57 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 193212 2018-02-16 10:57 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 172748 2018-02-16 10:57 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/lib/paml/data/ -rw-r--r-- root/root 56 2017-12-03 17:07 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 97 2017-12-03 17:07 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 299 2017-12-03 17:07 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 124 2017-12-03 17:07 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 161 2017-12-03 17:07 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1403 2017-12-03 17:07 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1781 2017-12-03 17:07 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 2033 2017-12-03 17:07 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4276 2017-12-03 17:07 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 493 2018-02-16 10:57 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 6186 2017-12-03 17:07 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 1794 2018-02-16 10:57 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5830 2017-12-03 17:07 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 278 2017-12-03 17:07 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 100 2017-12-03 17:07 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2999 2018-02-16 10:57 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 660 2018-02-16 10:57 ./usr/lib/paml/data/codonml.ctl drwxr-xr-x root/root 0 2017-12-03 17:02 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1850 2017-12-03 17:07 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 10073 2017-12-03 17:07 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1874 2017-12-03 17:07 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2972 2017-12-03 17:07 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5284 2017-12-03 17:07 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1536 2017-12-03 17:07 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1372 2017-12-03 17:07 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1130 2017-12-03 17:07 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1359 2017-12-03 17:07 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1681 2017-12-03 17:07 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2960 2017-12-03 17:07 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 12131 2017-12-03 17:07 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2713 2017-12-03 17:07 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1258 2017-12-03 17:07 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4886 2017-12-03 17:07 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2370 2017-12-03 17:07 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3844 2017-12-03 17:07 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3337 2017-12-03 17:07 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 4124 2017-12-03 17:07 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 769 2017-12-03 17:07 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1299 2018-02-16 10:57 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 242 2017-12-03 17:07 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70466 2017-12-03 17:07 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11708 2017-12-03 17:07 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 374 2018-02-16 10:57 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 1008 2017-12-03 17:07 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 143 2017-12-03 17:07 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 719 2018-02-16 10:57 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/share/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/share/doc/paml/ -rw-r--r-- root/root 675 2017-12-03 17:07 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 898 2018-02-16 10:57 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 1419 2017-12-03 17:07 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1621 2018-02-16 10:57 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 827 2018-02-16 10:57 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2018-02-16 10:57 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2018-02-16 10:57 ./usr/share/doc/paml/profile.d/paml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 21712 Build-Time: 87 Distribution: bionic-proposed Host Architecture: armhf Install-Time: 17 Job: paml_4.9g+dfsg-1.dsc Machine Architecture: arm64 Package: paml Package-Time: 106 Source-Version: 4.9g+dfsg-1 Space: 21712 Status: successful Version: 4.9g+dfsg-1 -------------------------------------------------------------------------------- Finished at 20180216-1720 Build needed 00:01:46, 21712k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 Scanning for processes to kill in build PACKAGEBUILD-14359926 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 Stopping target for build PACKAGEBUILD-14359926 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-14359926 Removing build PACKAGEBUILD-14359926