https://launchpad.net/ubuntu/+source/paml/4.9h+dfsg-1/+build/14833824 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-014 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 May 17:35:31 ntpdate[1846]: adjust time server 10.211.37.1 offset -0.053998 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-14833824 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 Starting target for build PACKAGEBUILD-14833824 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 'deb http://ftpmaster.internal/ubuntu cosmic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-14833824 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 Updating target for build PACKAGEBUILD-14833824 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf Packages [967 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/restricted armhf Packages [8360 B] Get:8 http://ftpmaster.internal/ubuntu cosmic/restricted Translation-en [3584 B] Get:9 http://ftpmaster.internal/ubuntu cosmic/universe armhf Packages [8297 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4971 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/multiverse armhf Packages [129 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/multiverse Translation-en [109 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf Packages [52.9 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [33.1 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf Packages [406 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [346 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/multiverse armhf Packages [4040 B] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/multiverse Translation-en [11.2 kB] Fetched 16.3 MB in 7s (2261 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libmount1 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libreadline7 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tar tzdata util-linux 67 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 37.4 MB of archives. After this operation, 1008 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main armhf base-files armhf 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo6 armhf 6.1+20180210-2ubuntu2 [71.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf bash armhf 4.4.18-2ubuntu2 [552 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu4 [55.3 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf tar armhf 1.30+dfsg-1 [218 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg armhf 1.19.0.5ubuntu3 [1096 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf libext2fs2 armhf 1.44.1-2 [145 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fsprogs armhf 1.44.1-2 [369 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-bin armhf 6.1+20180210-2ubuntu2 [155 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libperl5.26 armhf 5.26.2-3 [2881 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl armhf 5.26.2-3 [201 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-base armhf 5.26.2-3 [1290 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw6 armhf 6.1+20180210-2ubuntu2 [104 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libuuid1 armhf 2.31.1-0.4ubuntu4 [19.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libblkid1 armhf 2.31.1-0.4ubuntu4 [112 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu4 [151 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmount1 armhf 2.31.1-0.4ubuntu4 [122 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu4 [74.3 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf fdisk armhf 2.31.1-0.4ubuntu4 [97.8 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf util-linux armhf 2.31.1-0.4ubuntu4 [845 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf base-passwd armhf 3.5.45 [46.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf mount armhf 2.31.1-0.4ubuntu4 [99.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf libgomp1 armhf 8.1.0-1ubuntu2 [66.6 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-8-base armhf 8.1.0-1ubuntu2 [18.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++6 armhf 8.1.0-1ubuntu2 [349 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf libcc1-0 armhf 8.1.0-1ubuntu2 [32.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf libatomic1 armhf 8.1.0-1ubuntu2 [7068 B] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc1 armhf 1:8.1.0-1ubuntu2 [37.1 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf libcap-ng0 armhf 0.7.9-1 [10.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf libcom-err2 armhf 1.44.1-2 [8612 B] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libgpg-error0 armhf 1.31-1 [48.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf libss2 armhf 1.44.1-2 [9388 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses5 armhf 6.1+20180210-2ubuntu2 [74.8 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw5 armhf 6.1+20180210-2ubuntu2 [95.3 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo5 armhf 6.1+20180210-2ubuntu2 [67.4 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libgmp10 armhf 2:6.1.2+dfsg-3 [182 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libp11-kit0 armhf 0.23.10-2 [162 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu2 [28.5 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses6 armhf 6.1+20180210-2ubuntu2 [78.5 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf procps armhf 2:3.3.12-3ubuntu2 [213 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf libargon2-0 armhf 0~20161029-2 [20.5 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf readline-common all 7.0-4ubuntu1 [52.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libreadline7 armhf 7.0-4ubuntu1 [103 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsqlite3-0 armhf 3.23.1-1 [425 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf tzdata all 2018e-1 [188 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main armhf libbinutils armhf 2.30-17ubuntu1 [309 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-common armhf 2.30-17ubuntu1 [193 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils armhf 2.30-17ubuntu1 [3344 B] Get:51 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-17ubuntu1 [2175 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main armhf libasan4 armhf 7.3.0-17ubuntu1 [327 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main armhf libubsan0 armhf 7.3.0-17ubuntu1 [108 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main armhf libcilkrts5 armhf 7.3.0-17ubuntu1 [35.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main armhf g++-7 armhf 7.3.0-17ubuntu1 [6047 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7 armhf 7.3.0-17ubuntu1 [5947 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++-7-dev armhf 7.3.0-17ubuntu1 [1536 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc-7-dev armhf 7.3.0-17ubuntu1 [709 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp-7 armhf 7.3.0-17ubuntu1 [5296 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7-base armhf 7.3.0-17ubuntu1 [18.9 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp armhf 4:7.3.0-3ubuntu3 [27.6 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc armhf 4:7.3.0-3ubuntu3 [5228 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main armhf g++ armhf 4:7.3.0-3ubuntu3 [1600 B] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main armhf build-essential armhf 12.5ubuntu2 [4732 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fslibs armhf 1.44.1-2 [2704 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main armhf libcomerr2 armhf 1.44.1-2 [2692 B] Get:69 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libusb-0.1-4 armhf 2:0.1.12-32 [15.6 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf pinentry-curses armhf 1.1.0-1build1 [31.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.4 MB in 1s (27.4 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_armhf.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:armhf (6.1+20180210-2ubuntu2) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_armhf.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_armhf.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-1_armhf.deb ... Unpacking tar (1.30+dfsg-1) over (1.29b-2) ... Setting up tar (1.30+dfsg-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_armhf.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12387 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Sat May 5 17:36:13 UTC 2018. Universal Time is now: Sat May 5 17:36:13 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:armhf (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:armhf (0~20161029-2) ... Setting up gcc-7-base:armhf (7.3.0-17ubuntu1) ... Setting up binutils-common:armhf (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:armhf (5.26.2-3) ... Setting up libsqlite3-0:armhf (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:armhf (1.44.1-2) ... Setting up libncurses6:armhf (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:armhf (2:0.1.12-32) ... Setting up libasan4:armhf (7.3.0-17ubuntu1) ... Setting up libbinutils:armhf (2.30-17ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-17ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14833824 armhf cosmic-proposed -c chroot:build-PACKAGEBUILD-14833824 --arch=armhf --dist=cosmic-proposed --nolog paml_4.9h+dfsg-1.dsc Initiating build PACKAGEBUILD-14833824 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-014.buildd +==============================================================================+ | paml 4.9h+dfsg-1 (armhf) 05 May 2018 17:36 | +==============================================================================+ Package: paml Version: 4.9h+dfsg-1 Source Version: 4.9h+dfsg-1 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/paml-mxzPQe/paml-4.9h+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/paml-mxzPQe' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14833824/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paml_4.9h+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vDw4Ds/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-vDw4Ds/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vDw4Ds/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-vDw4Ds/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vDw4Ds/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-vDw4Ds/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (129 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-vDw4Ds/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~) Filtered Build-Depends: debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-paml-dummy' in '/<>/resolver-TkqNpT/apt_archive/sbuild-build-depends-paml-dummy.deb'. Ign:1 copy:/<>/resolver-TkqNpT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TkqNpT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-TkqNpT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TkqNpT/apt_archive ./ Sources [208 B] Get:5 copy:/<>/resolver-TkqNpT/apt_archive ./ Packages [527 B] Fetched 2854 B in 0s (117 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install paml build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-paml-dummy 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 15.8 MB of archives. After this operation, 57.4 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TkqNpT/apt_archive ./ sbuild-build-depends-paml-dummy 0.invalid.0 [852 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf man-db armhf 2.8.3-2 [993 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmagic-mgc armhf 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmagic1 armhf 1:5.33-2 [63.8 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf file armhf 1:5.33-2 [22.1 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main armhf libglib2.0-0 armhf 2.56.1-2ubuntu1 [1014 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1 [567 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext-base armhf 0.19.8.1-6build1 [46.2 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf autopoint all 0.19.8.1-6build1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libtool all 2.4.6-2.1 [195 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-autoreconf all 17 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dh-strip-nondeterminism all 0.041-1 [5188 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext armhf 0.19.8.1-6build1 [834 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf debhelper all 11.2.1ubuntu1 [906 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.8 MB in 1s (26.6 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_armhf.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-2_armhf.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:armhf. 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Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-6build1_armhf.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_11.2.1ubuntu1_all.deb ... Unpacking debhelper (11.2.1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-paml-dummy. Preparing to unpack .../29-sbuild-build-depends-paml-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-paml-dummy (0.invalid.0) ... Setting up libicu60:armhf (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:armhf (1:5.33-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-paml-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-arm-linux-gnueabihf_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-17ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcilkrts5_7.3.0-17ubuntu1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.31-1 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libreadline7_7.0-4ubuntu1 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-4ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-paml-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Apr 27 05:24:20 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./paml_4.9h+dfsg-1.dsc dpkg-source: info: extracting paml in paml-4.9h+dfsg dpkg-source: info: unpacking paml_4.9h+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.9h+dfsg-1.debian.tar.xz dpkg-source: info: applying hardening.patch dpkg-source: info: applying add_clean_target.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14833824 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14833824 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14833824 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.9h+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build paml-4.9h+dfsg dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 -Oline clean make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 -Oline "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o basemlg basemlg.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:849:28: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c:857:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘printPatterns’: treesub.c:1075:22: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.npatt, com.npatt, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘AllPatterns’: treesub.c:1343:22: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 1, 0, NULL); ^~~ In file included from basemlg.c:11:0: paml.h:144:5: note: expected ‘char **’ but argument is of type ‘unsigned char **’ int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, ^~~~~~~~ In file included from basemlg.c:80:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4016:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o mcmctree mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:191:0: treesub.c: In function ‘ReadMorphology’: treesub.c:438:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:441:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8624:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &stree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3684:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:191:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:586:50: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ~~~~~~~~~~~~~^~~~~~~~~~~~ treesub.c:586:13: note: within this loop for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ^~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3721:48: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 10 and 22 [-Wformat-overflow=] sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~ mcmctree.c:3721:33: note: assuming directive output of 12 bytes sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from paml.h:7, from mcmctree.c:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 14 and 38 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from baseml.c:129:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4016:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4596:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4898:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5759:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5783:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5789:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5794:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, flnf); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8624:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &stree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9488:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9586:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9679:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Rj[j]); ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9798:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%d? ", &nu_AHRS, &nbrate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o pamp pamp.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from pamp.c:66:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ pamp.c: In function ‘main’: pamp.c:115:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from codeml.c:236:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:4016:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finitials, "%lf", &xin[i = 0]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4596:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4898:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5759:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5783:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5789:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(flnf, "%d%d%lf", &j, &k, &y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5794:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, flnf); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8624:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &stree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9488:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(finStep1, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9586:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9679:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf", &Rj[j]); ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9798:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%d? ", &nu_AHRS, &nbrate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetDaa’: codeml.c:3908:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*naa + j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetOmegaAA’: codeml.c:4033:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (fin) fscanf(fin, "%d", &com.nOmegaType); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:4049:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &j); ^~~~~~~~~~~~~~~~~~~~~ codeml.c:4053:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, nline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘PairwiseCodon’: codeml.c:4315:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &is, &js); ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘lfunNSsites_rate’: codeml.c:5236:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &continuous); ^~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:5249:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fsites, "%d%s", &it, sitelabel); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o chi2 chi2.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now chi2.c: In function ‘main’: chi2.c:54:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf ("%d%lf", &df, &chi2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:191:0: treesub.c: In function ‘ReadMorphology’: treesub.c:438:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%s", com.spname[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:441:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data.zmorph[locus][i][j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8624:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &stree.nspecies, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.blMLE[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%lf", &data.Gradient[locus][i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fBGH, "%s", line); ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &FixedDs[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3684:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &dat[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:191:0: mcmctree.c: In function ‘ReadSeq’: treesub.c:586:50: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations] for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ~~~~~~~~~~~~~^~~~~~~~~~~~ treesub.c:586:13: note: within this loop for (i = 0; i < 3; i++) com.lgene[i] = com.ls / 3; ^~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3721:48: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 10 and 22 [-Wformat-overflow=] sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~ mcmctree.c:3721:33: note: assuming directive output of 12 bytes sprintf(nodes[j].nodeStr, "[&95%%={%.6g, %.6g}]", x025[jj], x975[jj]); ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from paml.h:7, from mcmctree.c:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 14 and 38 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o evolver evolver.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1297:39: warning: embedded ‘\0’ in format [-Wformat-contains-nul] sscanf(p + com.ns, "%lf%lf\0", &t, &Pclade[i*nmbfiles + k]); ^~ In file included from evolver.c:66:0: treesub.c: In function ‘ReadTreeB’: treesub.c:2785:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d", &tree.nbranch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2800:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] if (popline) fgets(line, 254, ftree); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3049:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].branch); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3096:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].label); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3098:44: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (ch == '$') { *haslabel = 1; fscanf(ftree, "%d", &CladeLabel[inodeb]); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3100:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%lf", &nodes[inodeb].age); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3165:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ftree); ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘GetNSfromTreeFile’: treesub.c:4214:27: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (c == ':') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4215:32: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] else if (c == '#') fscanf(ftree, "%lf", &y); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘CladeSupport’: treesub.c:4412:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &i, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4437:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, ft); ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:4459:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fM, "%d%d", &s, &ntreeM); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘main’: evolver.c:150:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &option); ^~~~~~~~~~~~~~~~~~~~ evolver.c:156:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &com.ns); ^~~~~~~~~~~~~~~~~~~~ evolver.c:163:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ntree, &i); ^~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:166:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &BD); ^~~~~~~~~~~~~~~~ evolver.c:186:16: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:208:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s%s", treefile, mastertreefile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘between_f_and_x’: evolver.c:237:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &fromf); ^~~~~~~~~~~~~~~~~~~ evolver.c:239:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &n); if (n > 100) error2("too many classes"); ^~~~~~~~~~~~~~~ evolver.c:241:21: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, n - 1) scanf("%lf", &x[i]); ^~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘LabelClades’: evolver.c:263:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:265:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &unrooted); ^~~~~~~~~~~~~~~~~~~~~~ evolver.c:268:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &j); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:285:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", key); ^~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistanceDistribution’: evolver.c:385:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:388:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistances’: evolver.c:441:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", treef); ^~~~~~~~~~~~~~~~~~ evolver.c:444:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &com.ns, &ntree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:453:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d", &k); ^~~~~~~~~~~~~~~ evolver.c: In function ‘GetDaa’: evolver.c:633:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fdaa, "%lf", &daa[i*n + j]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘Simulate’: evolver.c:804:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &format); ^~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:805:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:809:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &i); ^~~~~~~~~~~~~~~~~~~~~ evolver.c:810:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d%d%d", &com.ns, &com.ls, &nr); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:813:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:825:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:825:39: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:849:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:850:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:855:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:856:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:863:21: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, nrate) fscanf(fin, "%lf", &Qrates[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:864:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:877:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:877:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:879:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:880:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:880:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:886:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:886:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:888:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:888:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:919:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.omega); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:920:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:926:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:926:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf%d", &com.alpha, &com.ncatG); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:932:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:948:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.model); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:950:29: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.model >= 2) { fscanf(fin, "%s", com.daafile); GetDaa(NULL, com.daa); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:951:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:958:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] for (k = 0; k < com.ncode; k++) fscanf(fin, "%lf", &com.pi[k]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:965:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:965:40: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1265:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(ftree, "%d%d", &i, &k); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' make[1]: Entering directory '/<>/paml-4.9h+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/paml-4.9h+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o yn00 yn00.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from yn00.c:70:0: treesub.c: In function ‘ReadSeq’: treesub.c:618:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fseq); ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:651:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] if (com.ngene > 9) fscanf(fseq, "%d", &ch); ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:940:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fseq, "%lf", &com.fpatt[h]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1154:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", filename); ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5354:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, lline, fin); ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5677:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin, "%lf", &data[j*n + i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9h+dfsg/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install-arch make[1]: Entering directory '/<>/paml-4.9h+dfsg' dh_install -a for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/<>/paml-4.9h+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>/paml-4.9h+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/<>/paml-4.9h+dfsg' dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/<>/paml-4.9h+dfsg' dh_link -a mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/<>/paml-4.9h+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>/paml-4.9h+dfsg' dh_fixperms -a find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/paml-4.9h+dfsg' dh_missing -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgstriptranslations: processing paml-dbgsym (in debian/.debhelper/paml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: processing control file: debian/.debhelper/paml/dbgsym-root/DEBIAN/control, package paml-dbgsym, directory debian/.debhelper/paml/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml-dbgsym' in 'debian/.debhelper/scratch-space/build-paml/paml-dbgsym_4.9h+dfsg-1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/paml/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml' in '../paml_4.9h+dfsg-1_armhf.deb'. Renaming paml-dbgsym_4.9h+dfsg-1_armhf.deb to paml-dbgsym_4.9h+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../paml_4.9h+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build paml-4.9h+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180505-1738 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paml_4.9h+dfsg-1_armhf.changes: ------------------------------- Format: 1.8 Date: Fri, 27 Apr 2018 07:20:08 +0200 Source: paml Binary: paml paml-doc Architecture: armhf Version: 4.9h+dfsg-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) paml-doc - Documentation for PAML Changes: paml (4.9h+dfsg-1) unstable; urgency=medium . * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 Checksums-Sha1: db54f28270aa62400f13ab92c39c019606348b5a 1724196 paml-dbgsym_4.9h+dfsg-1_armhf.ddeb de49d20f9fc59ce79f608c5cac5ace639537bf6a 4915 paml_4.9h+dfsg-1_armhf.buildinfo 077047999f509fe536a4ef7acd073623c21fa7f3 600280 paml_4.9h+dfsg-1_armhf.deb Checksums-Sha256: 3f1cc26824173a95e093dc5cb5e28afd4c264bf7eee864ab1ff15e8a0537ac5e 1724196 paml-dbgsym_4.9h+dfsg-1_armhf.ddeb 48c1cc20374150914cb842355100f5f8736f5ad9da29e2ffcd8dbeff8763de8a 4915 paml_4.9h+dfsg-1_armhf.buildinfo b0c6ad1d1a499e3714c0bb2543976bcafd14c836910021582568c8cf6098e854 600280 paml_4.9h+dfsg-1_armhf.deb Files: 9ed7cff5e29926cc2c5da52a5d2da0bf 1724196 debug optional paml-dbgsym_4.9h+dfsg-1_armhf.ddeb be4bcfd5b1e8a86247cc9e9b81df9595 4915 science optional paml_4.9h+dfsg-1_armhf.buildinfo 167c87d2cc47f9e707667c1f8387f35b 600280 science optional paml_4.9h+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paml_4.9h+dfsg-1_armhf.deb -------------------------- new debian package, version 2.0. size 600280 bytes: control archive=2332 bytes. 769 bytes, 16 lines control 3884 bytes, 60 lines md5sums Package: paml Version: 4.9h+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1981 Depends: libc6 (>= 2.7) Section: science Priority: optional Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. drwxr-xr-x root/root 0 2018-04-27 05:20 ./ drwxr-xr-x root/root 0 2018-04-27 05:20 ./etc/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./etc/paml/ lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2018-04-27 05:20 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/bin/ lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2018-04-27 05:20 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2018-04-27 05:20 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/paml/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 324804 2018-04-27 05:20 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 197444 2018-04-27 05:20 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 9636 2018-04-27 05:20 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 436340 2018-04-27 05:20 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 185076 2018-04-27 05:20 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 250796 2018-04-27 05:20 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 193212 2018-04-27 05:20 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 172748 2018-04-27 05:20 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/lib/paml/data/ -rw-r--r-- root/root 56 2018-03-30 23:17 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 97 2018-03-30 23:17 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 299 2018-03-30 23:17 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 124 2018-03-30 23:17 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 161 2018-03-30 23:17 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1403 2018-03-30 23:17 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1781 2018-03-30 23:17 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 2033 2018-03-30 23:17 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4276 2018-03-30 23:17 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 493 2018-04-27 05:20 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 6186 2018-03-30 23:17 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 1794 2018-04-27 05:20 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5830 2018-03-30 23:17 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 278 2018-03-30 23:17 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 100 2018-03-30 23:17 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2999 2018-04-27 05:20 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 660 2018-04-27 05:20 ./usr/lib/paml/data/codonml.ctl drwxr-xr-x root/root 0 2018-03-28 15:22 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1850 2018-03-30 23:17 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 10073 2018-03-30 23:17 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1874 2018-03-30 23:17 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2972 2018-03-30 23:17 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5284 2018-03-30 23:17 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1536 2018-03-30 23:17 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1372 2018-03-30 23:17 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1130 2018-03-30 23:17 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1359 2018-03-30 23:17 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1681 2018-03-30 23:17 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2960 2018-03-30 23:17 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 12131 2018-03-30 23:17 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2713 2018-03-30 23:17 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1258 2018-03-30 23:17 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4886 2018-03-30 23:17 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2370 2018-03-30 23:17 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3844 2018-03-30 23:17 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3337 2018-03-30 23:17 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 4124 2018-03-30 23:17 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 769 2018-03-30 23:17 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1299 2018-04-27 05:20 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 242 2018-03-30 23:17 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70466 2018-03-30 23:17 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11708 2018-03-30 23:17 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 374 2018-04-27 05:20 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 1008 2018-03-30 23:17 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 143 2018-03-30 23:17 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 719 2018-04-27 05:20 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/share/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/share/doc/paml/ -rw-r--r-- root/root 675 2018-03-30 23:17 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 898 2018-04-27 05:20 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 1419 2018-03-30 23:17 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1603 2018-04-27 05:20 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 827 2018-04-27 05:20 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2018-04-27 05:20 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2018-04-27 05:20 ./usr/share/doc/paml/profile.d/paml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 21748 Build-Time: 94 Distribution: cosmic-proposed Host Architecture: armhf Install-Time: 18 Job: paml_4.9h+dfsg-1.dsc Machine Architecture: arm64 Package: paml Package-Time: 114 Source-Version: 4.9h+dfsg-1 Space: 21748 Status: successful Version: 4.9h+dfsg-1 -------------------------------------------------------------------------------- Finished at 20180505-1738 Build needed 00:01:54, 21748k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 Scanning for processes to kill in build PACKAGEBUILD-14833824 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 Stopping target for build PACKAGEBUILD-14833824 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14833824 Removing build PACKAGEBUILD-14833824