https://launchpad.net/ubuntu/+source/paml/4.9j+dfsg-1/+build/18084864 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-021 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:35:07 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_180 python-lpbuildd_180 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Nov 23:11:42 ntpdate[1936]: adjust time server 10.211.37.1 offset -0.017608 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18084864 --image-type chroot /home/buildd/filecache-default/dc614fa4772464ee6d43f8f857199c7f024663c7 Creating target for build PACKAGEBUILD-18084864 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18084864 Starting target for build PACKAGEBUILD-18084864 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18084864 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18084864 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18084864 Updating target for build PACKAGEBUILD-18084864 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el Packages [941 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe ppc64el Packages [8521 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5194 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el Packages [57.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [36.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el Packages [342 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [212 kB] Fetched 16.3 MB in 14s (1127 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: base-files binutils binutils-common binutils-powerpc64le-linux-gnu bzip2 cpp-9 debianutils g++-9 gcc-9 gcc-9-base hostname libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libncurses6 libncursesw6 libp11-kit0 libquadmath0 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev lsb-base ncurses-base ncurses-bin perl perl-base systemd systemd-sysv sysvinit-utils 61 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 54.8 MB of archives. After this operation, 50.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main ppc64el base-files ppc64el 11ubuntu1 [60.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el debianutils ppc64el 4.9 [86.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el hostname ppc64el 3.23 [11.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-bin ppc64el 6.1+20191019-1ubuntu1 [179 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el libperl5.30 ppc64el 5.30.0-9 [3914 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el perl ppc64el 5.30.0-9 [224 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-base ppc64el 5.30.0-9 [1494 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el bzip2 ppc64el 1.0.8-2 [36.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el libbz2-1.0 ppc64el 1.0.8-2 [43.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el lsb-base all 11.1.0ubuntu1 [12.2 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el sysvinit-utils ppc64el 2.96-1ubuntu1 [23.0 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd-sysv ppc64el 243-3ubuntu1 [9364 B] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el libacl1 ppc64el 2.2.53-5 [20.3 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el libapparmor1 ppc64el 2.13.3-5ubuntu5 [38.3 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap-ng0 ppc64el 0.7.9-2.1 [11.7 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit1 ppc64el 1:2.8.5-2ubuntu2 [42.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libcap2 ppc64el 1:2.27-1 [15.2 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-6 [33.1 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libcryptsetup12 ppc64el 2:2.2.1-1ubuntu1 [213 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el libnettle7 ppc64el 3.5.1+really3.5.1-2 [145 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el libhogweed5 ppc64el 3.5.1+really3.5.1-2 [140 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libp11-kit0 ppc64el 0.23.18.1-2 [199 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libgnutls30 ppc64el 3.6.9-5ubuntu2 [771 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el libkmod2 ppc64el 26-3ubuntu1 [50.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el liblz4-1 ppc64el 1.9.2-1 [62.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd ppc64el 243-3ubuntu1 [4400 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el libsystemd0 ppc64el 243-3ubuntu1 [302 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el libcc1-0 ppc64el 9.2.1-19ubuntu1 [52.8 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.33.1-1ubuntu1 [1789 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el libbinutils ppc64el 2.33.1-1ubuntu1 [511 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-common ppc64el 2.33.1-1ubuntu1 [203 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils ppc64el 2.33.1-1ubuntu1 [3396 B] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el libgomp1 ppc64el 9.2.1-19ubuntu1 [92.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el libitm1 ppc64el 9.2.1-19ubuntu1 [29.4 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el libatomic1 ppc64el 9.2.1-19ubuntu1 [9936 B] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el libasan5 ppc64el 9.2.1-19ubuntu1 [408 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el liblsan0 ppc64el 9.2.1-19ubuntu1 [148 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el libtsan0 ppc64el 9.2.1-19ubuntu1 [305 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libubsan1 ppc64el 9.2.1-19ubuntu1 [140 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libquadmath0 ppc64el 9.2.1-19ubuntu1 [149 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9-base ppc64el 9.2.1-19ubuntu1 [19.2 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++6 ppc64el 9.2.1-19ubuntu1 [543 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el g++-9 ppc64el 9.2.1-19ubuntu1 [10.4 MB] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++-9-dev ppc64el 9.2.1-19ubuntu1 [1747 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc-9-dev ppc64el 9.2.1-19ubuntu1 [1262 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9 ppc64el 9.2.1-19ubuntu1 [9762 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el cpp-9 ppc64el 9.2.1-19ubuntu1 [9072 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc1 ppc64el 1:9.2.1-19ubuntu1 [29.6 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el libattr1 ppc64el 1:2.4.48-5 [13.6 kB] Get:53 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libdebconfclient0 ppc64el 0.250ubuntu1 [6316 B] Get:54 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcrypt20 ppc64el 1.8.5-3ubuntu1 [439 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses6 ppc64el 6.1+20191019-1ubuntu1 [120 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el libtinfo6 ppc64el 6.1+20191019-1ubuntu1 [101 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el libncursesw6 ppc64el 6.1+20191019-1ubuntu1 [152 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el libselinux1 ppc64el 2.9-2build1 [82.3 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage-common all 2.9-3build1 [9736 B] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage1 ppc64el 2.9-3build1 [95.2 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el libudev1 ppc64el 243-3ubuntu1 [91.5 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el libsqlite3-0 ppc64el 3.30.1-1 [568 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile-bin ppc64el 1.16-1.1 [12.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile1 ppc64el 1.16-1.1 [7236 B] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el linux-libc-dev ppc64el 5.3.0-21.22 [1079 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 54.8 MB in 37s (1486 kB/s) (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_ppc64el.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../debianutils_4.9_ppc64el.deb ... Unpacking debianutils (4.9) over (4.8.6.3) ... Setting up debianutils (4.9) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../hostname_3.23_ppc64el.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_ppc64el.deb ... 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Setting up libperl5.30:ppc64el (5.30.0-9) ... Setting up liblockfile1:ppc64el (1.16-1.1) ... Setting up libjson-c4:ppc64el (0.13.1+dfsg-6) ... Setting up libbinutils:ppc64el (2.33.1-1ubuntu1) ... Setting up libcc1-0:ppc64el (9.2.1-19ubuntu1) ... Setting up liblsan0:ppc64el (9.2.1-19ubuntu1) ... Setting up libitm1:ppc64el (9.2.1-19ubuntu1) ... Setting up libkmod2:ppc64el (26-3ubuntu1) ... Setting up libtsan0:ppc64el (9.2.1-19ubuntu1) ... Setting up libgcc-9-dev:ppc64el (9.2.1-19ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up libcryptsetup12:ppc64el (2:2.2.1-1ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.33.1-1ubuntu1) ... Setting up libstdc++-9-dev:ppc64el (9.2.1-19ubuntu1) ... Setting up systemd (243-3ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.33.1-1ubuntu1) ... Setting up gcc-9 (9.2.1-19ubuntu1) ... Setting up systemd-sysv (243-3ubuntu1) ... Setting up g++-9 (9.2.1-19ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18084864 ppc64el focal-proposed -c chroot:build-PACKAGEBUILD-18084864 --arch=ppc64el --dist=focal-proposed --nolog paml_4.9j+dfsg-1.dsc Initiating build PACKAGEBUILD-18084864 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:35:07 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-021.buildd +==============================================================================+ | paml 4.9j+dfsg-1 (ppc64el) 10 Nov 2019 23:12 | +==============================================================================+ Package: paml Version: 4.9j+dfsg-1 Source Version: 4.9j+dfsg-1 Distribution: focal-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/paml-lpigfZ/paml-4.9j+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/paml-lpigfZ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18084864/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paml_4.9j+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-8DAmR5/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-8DAmR5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8DAmR5/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8DAmR5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8DAmR5/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-8DAmR5/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (182 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-8DAmR5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14616 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12) Filtered Build-Depends: debhelper-compat (= 12) dpkg-deb: building package 'sbuild-build-depends-paml-dummy' in '/<>/resolver-s8j8KU/apt_archive/sbuild-build-depends-paml-dummy.deb'. Ign:1 copy:/<>/resolver-s8j8KU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-s8j8KU/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-s8j8KU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-s8j8KU/apt_archive ./ Sources [210 B] Get:5 copy:/<>/resolver-s8j8KU/apt_archive ./ Packages [530 B] Fetched 2859 B in 0s (262 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install paml build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-paml-dummy 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 73.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-s8j8KU/apt_archive ./ sbuild-build-depends-paml-dummy 0.invalid.0 [856 B] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el groff-base ppc64el 1.22.4-3 [936 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el libpipeline1 ppc64el 1.5.1-2 [27.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el man-db ppc64el 2.9.0-1 [1145 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic-mgc ppc64el 1:5.37-6 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic1 ppc64el 1:5.37-6 [91.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el file ppc64el 1:5.37-6 [24.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libelf1 ppc64el 0.176-1.1 [51.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libglib2.0-0 ppc64el 2.63.1-1 [1368 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el libicu63 ppc64el 63.2-2 [8505 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-7ubuntu5 [680 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext-base ppc64el 0.19.8.1-9 [52.8 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el autoconf all 2.69-11ubuntu1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main ppc64el autopoint all 0.19.8.1-9 [412 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libtool all 2.4.6-11 [194 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libarchive-zip-perl all 1.67-1 [90.4 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el libfile-stripnondeterminism-perl all 1.6.2-1 [16.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-strip-nondeterminism all 1.6.2-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el dwz ppc64el 0.13-2 [131 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext ppc64el 0.19.8.1-9 [978 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el debhelper all 12.7.1ubuntu1 [875 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.6 MB in 10s (1681 kB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 14616 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../02-libuchardet0_0.0.6-3_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_ppc64el.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../04-libpipeline1_1.5.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.0-1_ppc64el.deb ... Unpacking man-db (2.9.0-1) ... 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Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.7.1ubuntu1_all.deb ... Unpacking debhelper (12.7.1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-paml-dummy. Preparing to unpack .../33-sbuild-build-depends-paml-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-paml-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.1-2) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:ppc64el (2.63.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libmagic1:ppc64el (1:5.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu5) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up libtool (2.4.6-11) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-2) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-paml-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-166-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.33.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-19ubuntu1 gcc-9_9.2.1-19ubuntu1 libc6-dev_2.30-0ubuntu2 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 linux-libc-dev_5.3.0-21.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11ubuntu1 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.33.1-1ubuntu1 binutils-common_2.33.1-1ubuntu1 binutils-powerpc64le-linux-gnu_2.33.1-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 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libaudit1_1:2.8.5-2ubuntu2 libbinutils_2.33.1-1ubuntu1 libblkid1_2.34-0.1ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu2 libc-dev-bin_2.30-0ubuntu2 libc6_2.30-0ubuntu2 libc6-dev_2.30-0ubuntu2 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-19ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.1-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu1 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu6 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.2-1 libgcc-9-dev_9.2.1-19ubuntu1 libgcc1_1:9.2.1-19ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.63.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5ubuntu2 libgomp1_9.2.1-19ubuntu1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libitm1_9.2.1-19ubuntu1 libjson-c4_0.13.1+dfsg-6 libkmod2_26-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_9.2.1-19ubuntu1 liblz4-1_1.9.2-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libquadmath0_9.2.1-19ubuntu1 libreadline8_8.0-3 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2build1 libsemanage-common_2.9-3build1 libsemanage1_2.9-3build1 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.30.1-1 libss2_1.45.3-4ubuntu2 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 libsub-override-perl_0.09-2 libsystemd0_243-3ubuntu1 libtasn1-6_4.14-3 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-11 libtsan0_9.2.1-19ubuntu1 libubsan1_9.2.1-19ubuntu1 libuchardet0_0.0.6-3 libudev1_243-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu5 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.0-21.22 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-paml-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 util-linux_2.34-0.1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Nov 10 17:59:10 2019 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./paml_4.9j+dfsg-1.dsc dpkg-source: info: extracting paml in paml-4.9j+dfsg dpkg-source: info: unpacking paml_4.9j+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.9j+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying add_clean_target.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18084864 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18084864 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18084864 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.9j+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/paml-4.9j+dfsg' dh_auto_clean cd src && make -j4 clean make[2]: Entering directory '/<>/paml-4.9j+dfsg/src' rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites make[2]: Leaving directory '/<>/paml-4.9j+dfsg/src' rm -f src/baseml src/basemlg src/chi2 src/codeml src/evolver src/infinitesites src/mcmctree src/pamp src/yn00 make[1]: Leaving directory '/<>/paml-4.9j+dfsg' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/paml-4.9j+dfsg/src' cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o basemlg basemlg.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o mcmctree mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from baseml.c:131: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from baseml.c:11: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from mcmctree.c:22: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘ReadSeq’: treesub.c:858:31: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 858 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c:866:28: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 866 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘printPatterns’: treesub.c:1093:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 1093 | printsma(fout, com.spname, com.z, com.ns, com.npatt, com.npatt, gap, com.seqtype, 1, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘AllPatterns’: treesub.c:1361:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 1361 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 1, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from codeml.c:238: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from codeml.c:17: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘ReadMorphology’: treesub.c:447:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 447 | fscanf(fin, "%s", com.spname[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:450:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from baseml.c:131: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4565:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4565 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 840 | fscanf(fBGH, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 870 | fscanf(fBGH, "%s", line); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: mcmctree.c: In function ‘GenerateBlengthGH’: treesub.c:4867:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4867 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 1028 | system(line); | ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1385 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1396 | fscanf(fin, "%lf", &FixedDs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5728:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5752:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5752 | fscanf(flnf, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5758:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5758 | fscanf(flnf, "%d%d%lf", &j, &k, &y); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5763:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5763 | fgets(line, lline, flnf); | ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3824:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3824 | fscanf(fin, "%lf", &dat[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9574:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9574 | fscanf(finStep1, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9672:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9765:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9765 | scanf("%lf", &Rj[j]); | ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9884:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from codeml.c:238: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4565:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4565 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4867:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4867 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5728:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5752:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5752 | fscanf(flnf, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5758:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5758 | fscanf(flnf, "%d%d%lf", &j, &k, &y); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5763:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5763 | fgets(line, lline, flnf); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9574:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9574 | fscanf(finStep1, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9672:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9765:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9765 | scanf("%lf", &Rj[j]); | ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9884:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetDaa’: codeml.c:3911:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3911 | fscanf(fdaa, "%lf", &daa[i*naa + j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetOmegaAA’: codeml.c:4036:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4036 | if (fin) fscanf(fin, "%d", &com.nOmegaType); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:4052:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4052 | fscanf(fin, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~ codeml.c:4056:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 4056 | fgets(line, nline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘PairwiseCodon’: codeml.c:4318:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 4318 | scanf("%d%d", &is, &js); | ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘lfunNSsites_rate’: codeml.c:5238:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5238 | scanf("%d", &continuous); | ^~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:5251:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5251 | fscanf(fsites, "%d%s", &it, sitelabel); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:3861:54: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 7 and 19 [-Wformat-overflow=] 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~ mcmctree.c:3861:36: note: assuming directive output of 12 bytes 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from paml.h:7, from mcmctree.c:22: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 41 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o pamp pamp.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from pamp.c:66: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from pamp.c:8: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from pamp.c:66: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pamp.c: In function ‘main’: pamp.c:115:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 115 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:192: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from mcmctree.c:22: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘ReadMorphology’: treesub.c:447:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 447 | fscanf(fin, "%s", com.spname[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:450:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 840 | fscanf(fBGH, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 870 | fscanf(fBGH, "%s", line); | ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 1028 | system(line); | ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1385 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1396 | fscanf(fin, "%lf", &FixedDs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3824:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3824 | fscanf(fin, "%lf", &dat[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o evolver evolver.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from evolver.c:66: treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘GetNSfromTreeFile’: treesub.c:4159:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4159 | fscanf(ftree, "%lf", &y); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘CladeSupport’: treesub.c:4369:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4369 | fscanf(fM, "%d%d", &i, &ntreeM); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4397:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 4397 | fgets(line, lline, ft); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:4419:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4419 | fscanf(fM, "%d%d", &s, &ntreeM); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘main’: evolver.c:155:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 155 | scanf("%d", &option); | ^~~~~~~~~~~~~~~~~~~~ evolver.c:161:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 161 | scanf("%d", &com.ns); | ^~~~~~~~~~~~~~~~~~~~ evolver.c:168:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 168 | scanf("%d%d", &ntree, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:171:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 171 | scanf("%d", &BD); | ^~~~~~~~~~~~~~~~ evolver.c:191:16: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 191 | scanf("%lf%lf%lf%lf", &birth, &death, &sample, &mut); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:213:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 213 | scanf("%s%s", treefile, mastertreefile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘between_f_and_x’: evolver.c:243:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 243 | scanf("%d", &fromf); | ^~~~~~~~~~~~~~~~~~~ evolver.c:245:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 245 | scanf("%d", &n); if (n > 100) error2("too many classes"); | ^~~~~~~~~~~~~~~ evolver.c:247:21: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 247 | FOR(i, n - 1) scanf("%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘LabelClades’: evolver.c:269:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 269 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:271:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 271 | scanf("%d", &unrooted); | ^~~~~~~~~~~~~~~~~~~~~~ evolver.c:274:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 274 | fscanf(ftree, "%d%d", &com.ns, &j); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:291:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 291 | scanf("%s", key); | ^~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistanceDistribution’: evolver.c:390:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 390 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:393:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 393 | fscanf(ftree, "%d%d", &com.ns, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistances’: evolver.c:446:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 446 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:449:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 449 | fscanf(ftree, "%d%d", &com.ns, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:458:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 458 | scanf("%d", &k); | ^~~~~~~~~~~~~~~ evolver.c: In function ‘GetDaa’: evolver.c:638:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 638 | fscanf(fdaa, "%lf", &daa[i*n + j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘Simulate’: evolver.c:809:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 809 | fscanf(fin, "%d", &format); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:810:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 810 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:814:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 814 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ evolver.c:815:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 815 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:817:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 817 | fscanf(fin, "%d%d%d", &com.ns, &com.ls, &nr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:818:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 818 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:830:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 830 | fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:830:39: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 830 | fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:854:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 854 | fscanf(fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:855:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 855 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:860:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 860 | fscanf(fin, "%d", &com.model); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:861:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 861 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:868:21: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | FOR(i, nrate) fscanf(fin, "%lf", &Qrates[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:869:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 869 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:882:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 882 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:882:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 882 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:884:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 884 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:884:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 884 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 885 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 885 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:891:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 891 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:891:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 891 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:893:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 893 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:893:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 893 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:924:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 924 | fscanf(fin, "%lf", &com.omega); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:925:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 925 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 931 | fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 931 | fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:936:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 936 | fscanf(fin, "%lf%d", &com.alpha, &com.ncatG); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:937:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 937 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:953:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 953 | fscanf(fin, "%d", &com.model); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:955:29: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 955 | if (com.model >= 2) { fscanf(fin, "%s", com.daafile); GetDaa(NULL, com.daa); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:956:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 956 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:963:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 963 | for (k = 0; k < com.ncode; k++) fscanf(fin, "%lf", &com.pi[k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:970:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 970 | fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:970:40: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 970 | fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1268:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1268 | fscanf(ftree, "%d%d", &i, &k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:3861:54: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 7 and 19 [-Wformat-overflow=] 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~ mcmctree.c:3861:36: note: assuming directive output of 12 bytes 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from paml.h:7, from mcmctree.c:22: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 41 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o yn00 yn00.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from yn00.c:70: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from yn00.c:13: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from yn00.c:70: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o chi2 chi2.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now chi2.c: In function ‘main’: chi2.c:54:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 54 | scanf ("%d%lf", &df, &chi2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/paml-4.9j+dfsg/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install-arch make[1]: Entering directory '/<>/paml-4.9j+dfsg' dh_install -a for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/<>/paml-4.9j+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>/paml-4.9j+dfsg' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/<>/paml-4.9j+dfsg' dh_installinit -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/<>/paml-4.9j+dfsg' dh_link -a mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/<>/paml-4.9j+dfsg' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>/paml-4.9j+dfsg' dh_fixperms -a find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/paml-4.9j+dfsg' dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgstriptranslations: processing paml-dbgsym (in debian/.debhelper/paml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: Truncating usr/share/doc/paml/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/paml/dbgsym-root/DEBIAN/control, package paml-dbgsym, directory debian/.debhelper/paml/dbgsym-root dpkg-deb: building package 'paml-dbgsym' in 'debian/.debhelper/scratch-space/build-paml/paml-dbgsym_4.9j+dfsg-1_ppc64el.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package paml ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml' in '../paml_4.9j+dfsg-1_ppc64el.deb'. Renaming paml-dbgsym_4.9j+dfsg-1_ppc64el.deb to paml-dbgsym_4.9j+dfsg-1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../paml_4.9j+dfsg-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191110-2313 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paml_4.9j+dfsg-1_ppc64el.changes: --------------------------------- Format: 1.8 Date: Sun, 10 Nov 2019 18:54:50 +0100 Source: paml Binary: paml Architecture: ppc64el Version: 4.9j+dfsg-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steffen Moeller Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) Changes: paml (4.9j+dfsg-1) unstable; urgency=medium . * New upstream version * Also cleaning binaries after build * Standards-Version: 4.4.1 Checksums-Sha1: 470a257d088ee4d2c59a5d03bd18c9effac22721 2251296 paml-dbgsym_4.9j+dfsg-1_ppc64el.ddeb 05be73801a529d1f143156e3d7487b251be74af6 5043 paml_4.9j+dfsg-1_ppc64el.buildinfo 1475202bf29fcbb162b77f46b34bb4275cbd6e7f 701808 paml_4.9j+dfsg-1_ppc64el.deb Checksums-Sha256: c64227b08e9f4468867d51186785d1ab3b0fc4ee2cbcec39381d6ae36dfee8b0 2251296 paml-dbgsym_4.9j+dfsg-1_ppc64el.ddeb 8f945e6f7eb4c89175023f81f7a9325469e8a439e3bbc4af6849c458d40ddc18 5043 paml_4.9j+dfsg-1_ppc64el.buildinfo 4a2e58a9cb2e54b8baeaa5a6fcc3286402aac844179a9c44b3aaf1640e9afe16 701808 paml_4.9j+dfsg-1_ppc64el.deb Files: eb6c5f1308600c8d362e361466ab3322 2251296 debug optional paml-dbgsym_4.9j+dfsg-1_ppc64el.ddeb 7980b9eb89617ce04102287dfdf37823 5043 science optional paml_4.9j+dfsg-1_ppc64el.buildinfo 77714eaf6f05df1a161584c3a0b1b4ed 701808 science optional paml_4.9j+dfsg-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paml_4.9j+dfsg-1_ppc64el.deb ---------------------------- new debian package, version 2.0. size 701808 bytes: control archive=2336 bytes. 772 bytes, 16 lines control 3884 bytes, 60 lines md5sums Package: paml Version: 4.9j+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3562 Depends: libc6 (>= 2.29) Section: science Priority: optional Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. drwxr-xr-x root/root 0 2019-11-10 17:54 ./ drwxr-xr-x root/root 0 2019-11-10 17:54 ./etc/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./etc/paml/ lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2019-11-10 17:54 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/bin/ lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2019-11-10 17:54 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2019-11-10 17:54 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/paml/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 596496 2019-11-10 17:54 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 399280 2019-11-10 17:54 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 67840 2019-11-10 17:54 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 794320 2019-11-10 17:54 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 333568 2019-11-10 17:54 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 464976 2019-11-10 17:54 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 399008 2019-11-10 17:54 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 333504 2019-11-10 17:54 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/lib/paml/data/ -rw-r--r-- root/root 56 2019-10-18 14:02 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 97 2019-10-18 14:02 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 299 2019-10-18 14:02 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 124 2019-10-18 14:02 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 161 2019-10-18 14:02 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1403 2019-10-18 14:02 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1781 2019-10-18 14:02 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 2033 2019-10-18 14:02 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4276 2019-10-18 14:02 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 493 2019-11-10 17:54 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 6186 2019-10-18 14:02 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 1794 2019-11-10 17:54 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5830 2019-10-18 14:02 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 278 2019-10-18 14:02 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 100 2019-10-18 14:02 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2999 2019-11-10 17:54 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 660 2019-11-10 17:54 ./usr/lib/paml/data/codonml.ctl drwxr-xr-x root/root 0 2019-10-18 13:55 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1850 2019-10-18 14:02 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 10073 2019-10-18 14:02 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1874 2019-10-18 14:02 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2972 2019-10-18 14:02 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5284 2019-10-18 14:02 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1536 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1372 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1130 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1359 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1681 2019-10-18 14:02 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2960 2019-10-18 14:02 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 12131 2019-10-18 14:02 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2713 2019-10-18 14:02 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1258 2019-10-18 14:02 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4886 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2370 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3844 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3337 2019-10-18 14:02 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 4124 2019-10-18 14:02 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 769 2019-10-18 14:02 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1299 2019-11-10 17:54 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 338 2019-10-18 14:02 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70466 2019-10-18 14:02 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11708 2019-10-18 14:02 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 374 2019-11-10 17:54 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 1008 2019-10-18 14:02 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 143 2019-10-18 14:02 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 719 2019-11-10 17:54 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/share/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/share/doc/paml/ -rw-r--r-- root/root 675 2019-10-18 14:02 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 898 2019-11-10 17:54 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 1419 2019-10-18 14:02 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1037 2019-11-10 17:54 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 827 2019-11-10 17:54 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2019-11-10 17:54 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2019-11-10 17:54 ./usr/share/doc/paml/profile.d/paml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 29688 Build-Time: 41 Distribution: focal-proposed Host Architecture: ppc64el Install-Time: 18 Job: paml_4.9j+dfsg-1.dsc Machine Architecture: ppc64el Package: paml Package-Time: 60 Source-Version: 4.9j+dfsg-1 Space: 29688 Status: successful Version: 4.9j+dfsg-1 -------------------------------------------------------------------------------- Finished at 20191110-2313 Build needed 00:01:00, 29688k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18084864 Scanning for processes to kill in build PACKAGEBUILD-18084864