https://launchpad.net/ubuntu/+source/paml/4.9j+dfsg-2/+build/19281531 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-008 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 9 May 17:15:04 ntpdate[694941]: adjust time server 10.211.37.1 offset -0.012423 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 --image-type chroot /home/buildd/filecache-default/f3eb94e98b295919e6c8d0c40a2cb7b393a0119c Creating target for build PACKAGEBUILD-19281531 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 Starting target for build PACKAGEBUILD-19281531 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19281531 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 Updating target for build PACKAGEBUILD-19281531 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 Packages [880 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe riscv64 Packages [8053 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5168 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 Packages [37.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [33.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 Packages [363 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [285 kB] Fetched 15.9 MB in 32s (502 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libatomic1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libext2fs2 libgcc-9-dev libgcc-s1 libgcc1 libgomp1 libgpm2 libidn2-0 libncursesw6 libperl5.30 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libudev1 logsave make ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.30 sysvinit-utils 47 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB of archives. After this operation, 58.4 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.15-1ubuntu1 [205 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libcrypt1 riscv64 1:4.4.15-1ubuntu1 [94.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 base-files riscv64 11ubuntu7 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 libperl5.30 riscv64 5.30.0-10 [3447 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl riscv64 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-base riscv64 5.30.0-10 [1419 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 dash riscv64 0.5.10.2-7 [82.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-bin riscv64 6.2-1 [166 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 sysvinit-utils riscv64 2.96-3ubuntu1 [19.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgomp1 riscv64 10-20200425-1ubuntu2 [83.4 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-10-base riscv64 10-20200425-1ubuntu2 [19.3 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-s1 riscv64 10-20200425-1ubuntu2 [40.4 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libgcc1 riscv64 1:10-20200425-1ubuntu2 [40.4 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcc1-0 riscv64 10-20200425-1ubuntu2 [38.4 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 libatomic1 riscv64 10-20200425-1ubuntu2 [7484 B] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++6 riscv64 10-20200425-1ubuntu2 [506 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsystemd0 riscv64 245.5-2ubuntu1 [242 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 libudev1 riscv64 245.5-2ubuntu1 [69.7 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libapt-pkg6.0 riscv64 2.1.1 [801 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgv riscv64 2.2.20-1ubuntu1 [181 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 apt riscv64 2.1.1 [1232 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 logsave riscv64 1.45.6-1ubuntu1 [9708 B] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 libext2fs2 riscv64 1.45.6-1ubuntu1 [175 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main riscv64 e2fsprogs riscv64 1.45.6-1ubuntu1 [496 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 libacl1 riscv64 2.2.53-8 [16.4 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncursesw6 riscv64 6.2-1 [116 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtinfo6 riscv64 6.2-1 [78.7 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 libidn2-0 riscv64 2.3.0-1 [50.5 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcom-err2 riscv64 1.45.6-1ubuntu1 [8564 B] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 libss2 riscv64 1.45.6-1ubuntu1 [9820 B] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsqlite3-0 riscv64 3.31.1-5 [487 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssl1.1 riscv64 1.1.1f-1ubuntu2 [967 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 openssl riscv64 1.1.1f-1ubuntu2 [595 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main riscv64 g++-9 riscv64 9.3.0-11ubuntu2 [6930 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9 riscv64 9.3.0-11ubuntu2 [6789 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++-9-dev riscv64 9.3.0-11ubuntu2 [3681 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-9-dev riscv64 9.3.0-11ubuntu2 [404 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 cpp-9 riscv64 9.3.0-11ubuntu2 [6047 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9-base riscv64 9.3.0-11ubuntu2 [19.4 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg riscv64 2.2.20-1ubuntu1 [439 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgconf riscv64 2.2.20-1ubuntu1 [110 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg-agent riscv64 2.2.20-1ubuntu1 [202 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgpm2 riscv64 1.20.7-6 [14.2 kB] Get:47 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 make riscv64 4.2.1-2 [152 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.7 MB in 8s (4741 kB/s) (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.15-1ubuntu1_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.15-1ubuntu1_riscv64.deb ... Unpacking libcrypt1:riscv64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:riscv64 (1:4.4.15-1ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu7_riscv64.deb ... Unpacking base-files (11ubuntu7) over (11ubuntu5) ... Setting up base-files (11ubuntu7) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libperl5.30_5.30.0-10_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl_5.30.0-10_riscv64.deb ... Unpacking perl (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-10_riscv64.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-10) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../perl-modules-5.30_5.30.0-10_all.deb ... Unpacking perl-modules-5.30 (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../debconf_1.5.74_all.deb ... Unpacking debconf (1.5.74) over (1.5.73) ... Setting up debconf (1.5.74) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-7_riscv64.deb ... Unpacking dash (0.5.10.2-7) over (0.5.10.2-6) ... Setting up dash (0.5.10.2-7) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2-1_riscv64.deb ... Unpacking ncurses-bin (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-bin (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2-1_all.deb ... Unpacking ncurses-base (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-base (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-3ubuntu1_riscv64.deb ... Unpacking sysvinit-utils (2.96-3ubuntu1) over (2.96-2.1ubuntu1) ... Setting up sysvinit-utils (2.96-3ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libgomp1_10-20200425-1ubuntu2_riscv64.deb ... Unpacking libgomp1:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../gcc-10-base_10-20200425-1ubuntu2_riscv64.deb ... Unpacking gcc-10-base:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up gcc-10-base:riscv64 (10-20200425-1ubuntu2) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200425-1ubuntu2_riscv64.deb ... Unpacking libgcc-s1:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up libgcc-s1:riscv64 (10-20200425-1ubuntu2) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200425-1ubuntu2_riscv64.deb ... Unpacking libgcc1 (1:10-20200425-1ubuntu2) over (1:10-20200411-0ubuntu1) ... Preparing to unpack .../libcc1-0_10-20200425-1ubuntu2_riscv64.deb ... Unpacking libcc1-0:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../libatomic1_10-20200425-1ubuntu2_riscv64.deb ... Unpacking libatomic1:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../libstdc++6_10-20200425-1ubuntu2_riscv64.deb ... Unpacking libstdc++6:riscv64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up libstdc++6:riscv64 (10-20200425-1ubuntu2) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.5-2ubuntu1_riscv64.deb ... Unpacking libsystemd0:riscv64 (245.5-2ubuntu1) over (245.4-4ubuntu1) ... Setting up libsystemd0:riscv64 (245.5-2ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libudev1_245.5-2ubuntu1_riscv64.deb ... Unpacking libudev1:riscv64 (245.5-2ubuntu1) over (245.4-4ubuntu1) ... Setting up libudev1:riscv64 (245.5-2ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.1_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.1.1) over (2.0.2) ... Setting up libapt-pkg6.0:riscv64 (2.1.1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1ubuntu1_riscv64.deb ... Unpacking gpgv (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Setting up gpgv (2.2.20-1ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.1_riscv64.deb ... Unpacking apt (2.1.1) over (2.0.2) ... Setting up apt (2.1.1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../logsave_1.45.6-1ubuntu1_riscv64.deb ... Unpacking logsave (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../libext2fs2_1.45.6-1ubuntu1_riscv64.deb ... Unpacking libext2fs2:riscv64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Setting up libext2fs2:riscv64 (1.45.6-1ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.6-1ubuntu1_riscv64.deb ... Unpacking e2fsprogs (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../libacl1_2.2.53-8_riscv64.deb ... Unpacking libacl1:riscv64 (2.2.53-8) over (2.2.53-6) ... Setting up libacl1:riscv64 (2.2.53-8) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2-1_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.2-1) over (6.2-0ubuntu2) ... Preparing to unpack .../libtinfo6_6.2-1_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.2-1) over (6.2-0ubuntu2) ... Setting up libtinfo6:riscv64 (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-1_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.0-1) over (2.2.0-2) ... Setting up libidn2-0:riscv64 (2.3.0-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.45.6-1ubuntu1_riscv64.deb ... Unpacking libcom-err2:riscv64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../01-libss2_1.45.6-1ubuntu1_riscv64.deb ... Unpacking libss2:riscv64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../02-libsqlite3-0_3.31.1-5_riscv64.deb ... Unpacking libsqlite3-0:riscv64 (3.31.1-5) over (3.31.1-4) ... Preparing to unpack .../03-libssl1.1_1.1.1f-1ubuntu2_riscv64.deb ... Unpacking libssl1.1:riscv64 (1.1.1f-1ubuntu2) over (1.1.1f-1ubuntu1) ... Preparing to unpack .../04-openssl_1.1.1f-1ubuntu2_riscv64.deb ... Unpacking openssl (1.1.1f-1ubuntu2) over (1.1.1f-1ubuntu1) ... Preparing to unpack .../05-g++-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking g++-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../06-gcc-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking gcc-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../07-libstdc++-9-dev_9.3.0-11ubuntu2_riscv64.deb ... Unpacking libstdc++-9-dev:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../08-libgcc-9-dev_9.3.0-11ubuntu2_riscv64.deb ... Unpacking libgcc-9-dev:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../09-cpp-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking cpp-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../10-gcc-9-base_9.3.0-11ubuntu2_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../11-gpg_2.2.20-1ubuntu1_riscv64.deb ... Unpacking gpg (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../12-gpgconf_2.2.20-1ubuntu1_riscv64.deb ... Unpacking gpgconf (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../13-gpg-agent_2.2.20-1ubuntu1_riscv64.deb ... Unpacking gpg-agent (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../14-libgpm2_1.20.7-6_riscv64.deb ... Unpacking libgpm2:riscv64 (1.20.7-6) over (1.20.7-5) ... Preparing to unpack .../15-make_4.2.1-2_riscv64.deb ... Unpacking make (4.2.1-2) over (4.2.1-1.2) ... Setting up libgpm2:riscv64 (1.20.7-6) ... Setting up perl-modules-5.30 (5.30.0-10) ... Setting up libgcc1 (1:10-20200425-1ubuntu2) ... Setting up libssl1.1:riscv64 (1.1.1f-1ubuntu2) ... Setting up libsqlite3-0:riscv64 (3.31.1-5) ... Setting up libcom-err2:riscv64 (1.45.6-1ubuntu1) ... Setting up libgomp1:riscv64 (10-20200425-1ubuntu2) ... Setting up make (4.2.1-2) ... Setting up libatomic1:riscv64 (10-20200425-1ubuntu2) ... Setting up libss2:riscv64 (1.45.6-1ubuntu1) ... Setting up libncursesw6:riscv64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libcrypt-dev:riscv64 (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:riscv64 (5.30.0-10) ... Setting up openssl (1.1.1f-1ubuntu2) ... Setting up libcc1-0:riscv64 (10-20200425-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up gcc-9-base:riscv64 (9.3.0-11ubuntu2) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libgcc-9-dev:riscv64 (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19281531 riscv64 groovy-proposed -c chroot:build-PACKAGEBUILD-19281531 --arch=riscv64 --dist=groovy-proposed --nolog paml_4.9j+dfsg-2.dsc Initiating build PACKAGEBUILD-19281531 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-008.buildd +==============================================================================+ | paml 4.9j+dfsg-2 (riscv64) Sat, 09 May 2020 17:20:24 +0000 | +==============================================================================+ Package: paml Version: 4.9j+dfsg-2 Source Version: 4.9j+dfsg-2 Distribution: groovy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19281531/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/paml-YRVojx/resolver-Nc78rK' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- paml_4.9j+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/paml-YRVojx/paml-4.9j+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/paml-YRVojx' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [369 B] Get:5 copy:/<>/apt_archive ./ Packages [454 B] Fetched 1780 B in 1s (2198 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy tzdata 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 17.0 MB of archives. After this operation, 67.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 groff-base riscv64 1.22.4-5 [815 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 libglib2.0-0 riscv64 2.64.2-1 [1123 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main riscv64 tzdata all 2020a-0ubuntu1 [293 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxml2 riscv64 2.9.10+dfsg-5 [559 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtool all 2.4.6-14 [161 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 po-debconf all 1.0.21 [233 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 debhelper all 13ubuntu1 [877 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.0 MB in 4s (4550 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_riscv64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.38-4_riscv64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../07-libmagic1_1%3a5.38-4_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.38-4_riscv64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../09-libelf1_0.176-1.1build1_riscv64.deb ... Unpacking libelf1:riscv64 (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../10-libglib2.0-0_2.64.2-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.64.2-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../11-tzdata_2020a-0ubuntu1_all.deb ... Unpacking tzdata (2020a-0ubuntu1) ... Selecting previously unselected package libicu66:riscv64. Preparing to unpack .../12-libicu66_66.1-2ubuntu2_riscv64.deb ... Unpacking libicu66:riscv64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../13-libxml2_2.9.10+dfsg-5_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.10+dfsg-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../14-gettext-base_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:riscv64. Preparing to unpack .../15-libsigsegv2_2.12-2_riscv64.deb ... Unpacking libsigsegv2:riscv64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-4_riscv64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../23-libdebhelper-perl_13ubuntu1_all.deb ... Unpacking libdebhelper-perl (13ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../25-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../26-libfile-stripnondeterminism-perl_1.8.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.8.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../27-dh-strip-nondeterminism_1.8.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.8.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.13-5_riscv64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:riscv64. Preparing to unpack .../29-libcroco3_0.6.13-1_riscv64.deb ... Unpacking libcroco3:riscv64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_13ubuntu1_all.deb ... Unpacking debhelper (13ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../34-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.2-2build1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13ubuntu1) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up tzdata (2020a-0ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 9 17:23:04 UTC 2020. Universal Time is now: Sat May 9 17:23:04 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libtool (2.4.6-14) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libxml2:riscv64 (2.9.10+dfsg-5) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-24.28 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-riscv64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-11ubuntu2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-11ubuntu2 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200425-1ubuntu2 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-11ubuntu2 gcc-9-base_9.3.0-11ubuntu2 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-0ubuntu4 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.1 libarchive-zip-perl_1.68-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200425-1ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200425-1ubuntu2 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11ubuntu2 libgcc-s1_10-20200425-1ubuntu2 libgcc1_1:10-20200425-1ubuntu2 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200425-1ubuntu2 libgpg-error0_1.37-1 libgpm2_1.20.7-6 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_245.5-2ubuntu1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-1 libtool_2.4.6-14 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-24.28 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: paml Binary: paml, paml-doc Architecture: any all Version: 4.9j+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Pjotr Prins , Steffen Moeller , Andreas Tille Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/paml Vcs-Git: https://salsa.debian.org/med-team/paml.git Build-Depends: debhelper-compat (= 12) Package-List: paml deb science optional arch=any paml-doc deb doc optional arch=all Checksums-Sha1: d40ca19fbd5a49c232a1bd1b863f0d5d69e21bc3 1375380 paml_4.9j+dfsg.orig.tar.xz 47c71e6e752ba457f48a34e5d53bc8790cc17c86 6080 paml_4.9j+dfsg-2.debian.tar.xz Checksums-Sha256: af7ccf450cb26b6b235559f3e6e70241ac59ed87caacf57bd91d6cdfaf81b9b8 1375380 paml_4.9j+dfsg.orig.tar.xz 4dd866992be558536b31687e02d79500dfc983daf698a30a225d741b7d732c03 6080 paml_4.9j+dfsg-2.debian.tar.xz Files: 1300f92065c7d3249a649caf2dad9417 1375380 paml_4.9j+dfsg.orig.tar.xz 7f0be649129e08ff6a4e2d2282aa6cbb 6080 paml_4.9j+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl62p+cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEyIw//fshlzlfbWAEXfacChKvyg+q9Iny8+SUR 4Sqm81jNFM3dgo5BNHlCoy+dHHGxdlAZJn9yVw5xgU7eGpX2J1HTI9WENsx4fEJA NIj15HYa2TGm6oTc9tEIv2JF4oM0GmXHr7k5nRaUp1Kl6ZEqw9SV6XzTrL6YW7pY NiZpoln4k2N4/lbXN7tk+CkCFq3vJfkPZMD24KHBM3Vopz1WHxH3/U7f+IDzIfrn HEGcciqZ4/LDkgI+Qak1P9f24XWI5kdab5Qn9TwWFGprC9GqpAT+dAhP2xKwFFpK lupGIL0XbHOdbcYhLz1hS+nnoTyC77rp/Kjbknpr+24F6K+ER5P+llXy5i2HUCph vQVkaSDY8FzosQba/02vgyjtyRq525vaKk+aLuuyUy9Re8VNTG20O2IB0phRnT6x fGXFXfYSNxLCuj9a1CIVbqD2djMeVODI3lVObhPHaDXJyDTCATsP0sj91BBx5yPH RzXkqMORGUfoJ3tCVH7SwU+eORg5ZeNWg/4w2eSbqfMwImyQycwPx+LzmAN8yG3e JvZvVPgjfrtWoVqegZh+A5yJvRMKMhASQMoZKHvf/mjtwEiMoBV/MeVyyDrwQX41 nl1qL4sl2UWCD66/Oynrt9zCm587pZZ2IAxxpJ1ym0FNzBtFRhtbMY4fz88iJIwm 1hscPnoT9rU= =KHEf -----END PGP SIGNATURE----- gpgv: Signature made Sat May 9 12:53:59 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./paml_4.9j+dfsg-2.dsc dpkg-source: info: extracting paml in /<> dpkg-source: info: unpacking paml_4.9j+dfsg.orig.tar.xz dpkg-source: info: unpacking paml_4.9j+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying add_clean_target.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19281531 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19281531 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19281531 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package paml dpkg-buildpackage: info: source version 4.9j+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean cd src && make -j8 clean make[2]: Entering directory '/<>/src' rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites make[2]: Leaving directory '/<>/src' rm -f src/baseml src/basemlg src/chi2 src/codeml src/evolver src/infinitesites src/mcmctree src/pamp src/yn00 make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/src' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o basemlg basemlg.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o mcmctree mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o pamp pamp.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o evolver evolver.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o yn00 yn00.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o chi2 chi2.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from yn00.c:70: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from yn00.c:13: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from codeml.c:238: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from codeml.c:17: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ chi2.c: In function ‘main’: chi2.c:54:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 54 | scanf ("%d%lf", &df, &chi2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from yn00.c:70: treesub.c: In function ‘ReadSeq’: In file included from pamp.c:66: treesub.c: In function ‘IdenticalSeqs’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from pamp.c:8: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from mcmctree.c:22: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘ReadSeq’: treesub.c:858:31: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 858 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c:866:28: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 866 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 0, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘printPatterns’: treesub.c:1093:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 1093 | printsma(fout, com.spname, com.z, com.ns, com.npatt, com.npatt, gap, com.seqtype, 1, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘AllPatterns’: treesub.c:1361:25: warning: passing argument 2 of ‘printsma’ from incompatible pointer type [-Wincompatible-pointer-types] 1361 | printsma(fout, com.spname, com.z, com.ns, com.ls, com.ls, gap, com.seqtype, 1, 0, NULL); | ~~~^~~~~~~ | | | unsigned char ** In file included from basemlg.c:11: paml.h:153:31: note: expected ‘char **’ but argument is of type ‘unsigned char **’ 153 | int printsma (FILE*fout, char*spname[], unsigned char*z[], int ns, int l, int lline, int gap, int seqtype, | ~~~~~^~~~~~~~ In file included from evolver.c:66: treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from baseml.c:131: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from baseml.c:11: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘GetNSfromTreeFile’: treesub.c:4159:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4159 | fscanf(ftree, "%lf", &y); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘CladeSupport’: treesub.c:4369:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4369 | fscanf(fM, "%d%d", &i, &ntreeM); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:4397:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 4397 | fgets(line, lline, ft); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:4419:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4419 | fscanf(fM, "%d%d", &s, &ntreeM); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘main’: evolver.c:155:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 155 | scanf("%d", &option); | ^~~~~~~~~~~~~~~~~~~~ evolver.c:161:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 161 | scanf("%d", &com.ns); | ^~~~~~~~~~~~~~~~~~~~ evolver.c:168:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 168 | scanf("%d%d", &ntree, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:171:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 171 | scanf("%d", &BD); | ^~~~~~~~~~~~~~~~ evolver.c:191:16: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 191 | scanf("%lf%lf%lf%lf", &birth, &death, &sample, &mut); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:213:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 213 | scanf("%s%s", treefile, mastertreefile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘between_f_and_x’: evolver.c:243:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 243 | scanf("%d", &fromf); | ^~~~~~~~~~~~~~~~~~~ evolver.c:245:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 245 | scanf("%d", &n); if (n > 100) error2("too many classes"); | ^~~~~~~~~~~~~~~ evolver.c:247:21: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 247 | FOR(i, n - 1) scanf("%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘LabelClades’: evolver.c:269:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 269 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:271:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 271 | scanf("%d", &unrooted); | ^~~~~~~~~~~~~~~~~~~~~~ evolver.c:274:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 274 | fscanf(ftree, "%d%d", &com.ns, &j); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:291:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 291 | scanf("%s", key); | ^~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistanceDistribution’: evolver.c:390:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 390 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:393:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 393 | fscanf(ftree, "%d%d", &com.ns, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘TreeDistances’: evolver.c:446:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 446 | scanf("%s", treef); | ^~~~~~~~~~~~~~~~~~ evolver.c:449:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 449 | fscanf(ftree, "%d%d", &com.ns, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:458:4: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 458 | scanf("%d", &k); | ^~~~~~~~~~~~~~~ evolver.c: In function ‘GetDaa’: evolver.c:638:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 638 | fscanf(fdaa, "%lf", &daa[i*n + j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from pamp.c:66: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘Simulate’: evolver.c:809:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 809 | fscanf(fin, "%d", &format); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:810:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 810 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:814:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 814 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ evolver.c:815:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 815 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:817:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 817 | fscanf(fin, "%d%d%d", &com.ns, &com.ls, &nr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:818:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 818 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:830:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 830 | fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:830:39: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 830 | fscanf(fin, "%lf", &tlength); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:854:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 854 | fscanf(fin, "%lf%lf%lf%lf", &birth, &death, &sample, &mut); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:855:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 855 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:860:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 860 | fscanf(fin, "%d", &com.model); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:861:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 861 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:868:21: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | FOR(i, nrate) fscanf(fin, "%lf", &Qrates[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:869:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 869 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:882:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 882 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:882:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 882 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:884:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 884 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:884:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 884 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 885 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:885:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 885 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.rK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:891:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 891 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:891:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 891 | fscanf(fin, "%d", &com.ncatG); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:893:28: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 893 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:893:64: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 893 | FOR(i, com.ncatG) fscanf(fin, "%lf", &com.freqK[i]); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:924:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 924 | fscanf(fin, "%lf", &com.omega); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:925:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 925 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 931 | fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:931:41: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 931 | fscanf(fin, "%lf", &com.kappa); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:936:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 936 | fscanf(fin, "%lf%d", &com.alpha, &com.ncatG); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:937:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 937 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:953:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 953 | fscanf(fin, "%d", &com.model); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:955:29: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 955 | if (com.model >= 2) { fscanf(fin, "%s", com.daafile); GetDaa(NULL, com.daa); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:956:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 956 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c:963:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 963 | for (k = 0; k < com.ncode; k++) fscanf(fin, "%lf", &com.pi[k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:970:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 970 | fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ evolver.c:970:40: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 970 | fscanf(fin, "%d", &com.icode); fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ evolver.c: In function ‘CladeMrBayesProbabilities’: evolver.c:1268:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1268 | fscanf(ftree, "%d%d", &i, &k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘ReadMorphology’: treesub.c:447:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 447 | fscanf(fin, "%s", com.spname[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:450:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pamp.c: In function ‘main’: pamp.c:115:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 115 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 840 | fscanf(fBGH, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 870 | fscanf(fBGH, "%s", line); | ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 1028 | system(line); | ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1385 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1396 | fscanf(fin, "%lf", &FixedDs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from basemlg.c:80: treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from codeml.c:238: treesub.c: In function ‘ReadSeq’: mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:3824:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3824 | fscanf(fin, "%lf", &dat[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: In file included from baseml.c:131: treesub.c: In function ‘ReadSeq’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4565:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4565 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c: In function ‘StarDecomposition’: treesub.c:4867:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4867 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5728:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5752:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5752 | fscanf(flnf, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5758:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5758 | fscanf(flnf, "%d%d%lf", &j, &k, &y); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5763:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5763 | fgets(line, lline, flnf); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘readx’: treesub.c:3956:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3956 | fscanf(finitials, "%lf", &xin[i = 0]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘Perturbation’: treesub.c:4565:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4565 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘StarDecomposition’: treesub.c:4867:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4867 | fscanf(ftree, "%d%d", &i, &ntree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘rell’: treesub.c:5728:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5752:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5752 | fscanf(flnf, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~~ treesub.c:5758:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5758 | fscanf(flnf, "%d%d%lf", &j, &k, &y); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:5763:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5763 | fgets(line, lline, flnf); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9574:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9574 | fscanf(finStep1, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9672:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9765:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9765 | scanf("%lf", &Rj[j]); | ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9884:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘AdHocRateSmoothing’: treesub.c:9574:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9574 | fscanf(finStep1, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9672:36: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:9765:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9765 | scanf("%lf", &Rj[j]); | ^~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘DatingHeteroData’: treesub.c:9884:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetDaa’: codeml.c:3911:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3911 | fscanf(fdaa, "%lf", &daa[i*naa + j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘GetOmegaAA’: codeml.c:4036:16: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4036 | if (fin) fscanf(fin, "%d", &com.nOmegaType); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:4052:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 4052 | fscanf(fin, "%d", &j); | ^~~~~~~~~~~~~~~~~~~~~ codeml.c:4056:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 4056 | fgets(line, nline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘PairwiseCodon’: codeml.c:4318:13: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 4318 | scanf("%d%d", &is, &js); | ^~~~~~~~~~~~~~~~~~~~~~~ codeml.c: In function ‘lfunNSsites_rate’: codeml.c:5238:10: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5238 | scanf("%d", &continuous); | ^~~~~~~~~~~~~~~~~~~~~~~~ codeml.c:5251:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5251 | fscanf(fsites, "%d%s", &it, sitelabel); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:3861:54: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 7 and 19 [-Wformat-overflow=] 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~ mcmctree.c:3861:36: note: assuming directive output of 12 bytes 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from paml.h:7, from mcmctree.c:22: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 41 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o infinitesites -D INFINITESITES mcmctree.c tools.c -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now In file included from mcmctree.c:192: treesub.c: In function ‘IdenticalSeqs’: treesub.c:1310:33: warning: passing argument 3 of ‘printSeqs’ from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ | | | char ** In file included from mcmctree.c:22: paml.h:150:63: note: expected ‘unsigned char **’ but argument is of type ‘char **’ 150 | void printSeqs(FILE *fout, unsigned char *z[], unsigned char *spnames[], int ns, int ls, int npatt, double fpatt[], int *pose, char keep[], int format); | ~~~~~~~~~~~~~~~^~~~~~~~~ In file included from mcmctree.c:192: treesub.c: In function ‘ReadMorphology’: treesub.c:447:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 447 | fscanf(fin, "%s", com.spname[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:450:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadSeq’: treesub.c:627:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 627 | fgets(line, lline, fseq); | ^~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:660:39: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c:949:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 949 | fscanf(fseq, "%lf", &com.fpatt[h]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeB’: treesub.c:2812:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 2812 | fscanf(ftree, "%d", &tree.nbranch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:2827:17: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 2827 | if (popline) fgets(line, 254, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeN’: treesub.c:3091:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3091 | fscanf(ftree, "%lf", &nodes[inode].branch); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c:3151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 3151 | fgets(line, lline, ftree); | ^~~~~~~~~~~~~~~~~~~~~~~~~ treesub.c: In function ‘ReadTreeSeqs’: treesub.c:8742:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘ReadBlengthGH’: mcmctree.c:840:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 840 | fscanf(fBGH, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:861:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:868:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:870:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 870 | fscanf(fBGH, "%s", line); | ^~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘GenerateBlengthGH’: mcmctree.c:1028:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] 1028 | system(line); | ^~~~~~~~~~~~ mcmctree.c: In function ‘Infinitesites’: mcmctree.c:1385:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1385 | fscanf(fin, "%d", &i); | ^~~~~~~~~~~~~~~~~~~~~ mcmctree.c:1396:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 1396 | fscanf(fin, "%lf", &FixedDs[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c: In function ‘DescriptiveStatisticsSimpleMCMCTREE’: mcmctree.c:3824:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 3824 | fscanf(fin, "%lf", &dat[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mcmctree.c:3861:54: warning: ‘%.6g’ directive writing between 1 and 13 bytes into a region of size between 7 and 19 [-Wformat-overflow=] 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~ mcmctree.c:3861:36: note: assuming directive output of 12 bytes 3861 | sprintf(nodes[j].annotation, "[&95%%HPD={%.6g, %.6g}]", xHPD025[jj], xHPD975[jj]); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from paml.h:7, from mcmctree.c:22: /usr/include/riscv64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 41 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘gfopen’: tools.c:1148:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 1148 | scanf("%s", filename); | ^~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘scanfile’: tools.c:5356:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 5356 | fgets(line, lline, fin); | ^~~~~~~~~~~~~~~~~~~~~~~ tools.c: In function ‘DescriptiveStatistics’: tools.c:5678:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 5678 | fscanf(fin, "%lf", &data[j*n + i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools.c:5689:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] 5689 | scanf("%d%d", &ivar_f2d[i][0], &ivar_f2d[i][1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/<>/src' dh_auto_test -a -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ for item in seqfile treefile ; do \ sed -i -e "s?\(${item} =\).*[^a-z^A-Z^0-9^.^ ]\+\([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ -e "s?\(${item} =\) \([a-zA-Z0-9]\+\.[a-z]\+\)?\1 /usr/lib/paml/data/\2?" \ ${datfile} ; \ done ; \ done sed -i 's?\(aaRatefile = \)\(dat/jones.dat\)?\1/usr/lib/paml/data/\2?' debian/paml//usr/lib/paml/data/codeml.ctl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples for d in `find debian -name examples -a -type d`; do \ find $d \! -type d | xargs -r chmod -x ; \ done make[1]: Leaving directory '/<>' dh_installinit -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src debian/rules override_dh_link-arch make[1]: Entering directory '/<>' dh_link -a mkdir -p debian/paml/etc/paml/ for datfile in debian/paml//usr/lib/paml/data/*.ctl ; do \ ln -s /usr/lib/paml/data/`basename ${datfile}` debian/paml/etc/paml ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src debian/rules override_dh_fixperms-arch make[1]: Entering directory '/<>' dh_fixperms -a find debian/*/usr/lib/paml/data -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing paml (in debian/paml); do_strip: , oemstrip: pkgstriptranslations: processing paml-dbgsym (in debian/.debhelper/paml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/paml/DEBIAN/control, package paml, directory debian/paml pkgstripfiles: Truncating usr/share/doc/paml/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/paml/dbgsym-root/DEBIAN/control, package paml-dbgsym, directory debian/.debhelper/paml/dbgsym-root dpkg-deb: building package 'paml-dbgsym' in 'debian/.debhelper/scratch-space/build-paml/paml-dbgsym_4.9j+dfsg-2_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package paml ... pkgstripfiles: No PNG files. dpkg-deb: building package 'paml' in '../paml_4.9j+dfsg-2_riscv64.deb'. Renaming paml-dbgsym_4.9j+dfsg-2_riscv64.deb to paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../paml_4.9j+dfsg-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-05-09T17:32:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ paml_4.9j+dfsg-2_riscv64.changes: --------------------------------- Format: 1.8 Date: Fri, 08 May 2020 13:58:34 +0200 Source: paml Binary: paml Architecture: riscv64 Version: 4.9j+dfsg-2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Etienne Mollier Description: paml - Phylogenetic Analysis by Maximum Likelihood (PAML) Closes: 957659 Changes: paml (4.9j+dfsg-2) unstable; urgency=medium . * Team upload. * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Added patch to fix ftbfs gcc-10: Closes: #957659 Checksums-Sha1: 21c693e00f18857cf87a6d8834770c288f84c393 2041868 paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb fab20efc3922df26982641a72ac6c0112f17c3d4 4903 paml_4.9j+dfsg-2_riscv64.buildinfo f6ef78db519df05c2c38d319ead95db04ba59b18 598680 paml_4.9j+dfsg-2_riscv64.deb Checksums-Sha256: 7b04f5ec5a51aee5d3575868a480d25ffe97645eefc612956e49c84f0b4603b5 2041868 paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb e681905595460a9ab97eee9864a4c8611f2d059333c30e453a61fc8c6d9a04ad 4903 paml_4.9j+dfsg-2_riscv64.buildinfo 7de1d4a8743b552c2c8f597a301b8a7d86915816ebfd9db2714ffa2863eda57c 598680 paml_4.9j+dfsg-2_riscv64.deb Files: 4fc1eb3269206161ab240d81aaea99b2 2041868 debug optional paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb d285ceb6435b2c589bfe12f0d0e6e7f3 4903 science optional paml_4.9j+dfsg-2_riscv64.buildinfo bcd66ddaee0c7431e7c4da7442a0df1d 598680 science optional paml_4.9j+dfsg-2_riscv64.deb /<>/paml_4.9j+dfsg-2_riscv64.changes.new could not be renamed to /<>/paml_4.9j+dfsg-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: paml Binary: paml paml-doc Architecture: riscv64 Version: 4.9j+dfsg-2 Checksums-Md5: 4fc1eb3269206161ab240d81aaea99b2 2041868 paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb bcd66ddaee0c7431e7c4da7442a0df1d 598680 paml_4.9j+dfsg-2_riscv64.deb Checksums-Sha1: 21c693e00f18857cf87a6d8834770c288f84c393 2041868 paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb f6ef78db519df05c2c38d319ead95db04ba59b18 598680 paml_4.9j+dfsg-2_riscv64.deb Checksums-Sha256: 7b04f5ec5a51aee5d3575868a480d25ffe97645eefc612956e49c84f0b4603b5 2041868 paml-dbgsym_4.9j+dfsg-2_riscv64.ddeb 7de1d4a8743b552c2c8f597a301b8a7d86915816ebfd9db2714ffa2863eda57c 598680 paml_4.9j+dfsg-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sat, 09 May 2020 17:32:32 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu7), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-6ubuntu1), binutils-common (= 2.34-6ubuntu1), binutils-riscv64-linux-gnu (= 2.34-6ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu9), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-11ubuntu2), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-11ubuntu2), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200425-1ubuntu2), gcc-9 (= 9.3.0-11ubuntu2), gcc-9-base (= 9.3.0-11ubuntu2), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libatomic1 (= 10-20200425-1ubuntu2), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-6ubuntu1), libblkid1 (= 2.34-0.1ubuntu9), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu9), libc-dev-bin (= 2.31-0ubuntu9), libc6 (= 2.31-0ubuntu9), libc6-dev (= 2.31-0ubuntu9), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200425-1ubuntu2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1ubuntu1), libcrypt1 (= 1:4.4.15-1ubuntu1), libctf-nobfd0 (= 2.34-6ubuntu1), libctf0 (= 2.34-6ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 13ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libgcc-9-dev (= 9.3.0-11ubuntu2), libgcc-s1 (= 10-20200425-1ubuntu2), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200425-1ubuntu2), libgpg-error0 (= 1.37-1), libicu66 (= 66.1-2ubuntu2), libisl22 (= 0.22.1-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu9), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-10), libpipeline1 (= 1.5.2-2build1), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1ubuntu9), libstdc++-9-dev (= 9.3.0-11ubuntu2), libstdc++6 (= 10-20200425-1ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.5-2ubuntu1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.5-2ubuntu1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu9), libxml2 (= 2.9.10+dfsg-5), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-24.28), login (= 1:4.8.1-1ubuntu5), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-2), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-10), perl-base (= 5.30.0-10), perl-modules-5.30 (= 5.30.0-10), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2020a-0ubuntu1), util-linux (= 2.34-0.1ubuntu9), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1588939114" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ paml_4.9j+dfsg-2_riscv64.deb ---------------------------- new Debian package, version 2.0. size 598680 bytes: control archive=2340 bytes. 772 bytes, 16 lines control 3884 bytes, 60 lines md5sums Package: paml Version: 4.9j+dfsg-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1980 Depends: libc6 (>= 2.27) Section: science Priority: optional Homepage: http://abacus.gene.ucl.ac.uk/software/paml.html Description: Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc. drwxr-xr-x root/root 0 2020-05-08 11:58 ./ drwxr-xr-x root/root 0 2020-05-08 11:58 ./etc/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./etc/paml/ lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/aaml.ctl -> /usr/lib/paml/data/aaml.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/baseml.ctl -> /usr/lib/paml/data/baseml.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/codeml.ctl -> /usr/lib/paml/data/codeml.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/codonml.ctl -> /usr/lib/paml/data/codonml.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/mcmctree.ctl -> /usr/lib/paml/data/mcmctree.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/pamp.ctl -> /usr/lib/paml/data/pamp.ctl lrwxrwxrwx root/root 0 2020-05-08 11:58 ./etc/paml/yn00.ctl -> /usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/bin/ lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/baseml -> ../lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/basemlg -> ../lib/debian-med/bin/basemlg lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/chi2 -> ../lib/debian-med/bin/chi2 lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/codeml -> ../lib/debian-med/bin/codeml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/mcmctree -> ../lib/debian-med/bin/mcmctree lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/paml-evolver -> ../lib/debian-med/bin/evolver lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/pamp -> ../lib/debian-med/bin/pamp lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/bin/yn00 -> ../lib/debian-med/bin/yn00 drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 190 2020-05-08 11:58 ./usr/lib/debian-med/bin/baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/basemlg -> baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/chi2 -> ../../paml/bin/chi2 lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/codeml -> baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/evolver -> ../../paml/bin/evolver lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/mcmctree -> baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/pamp -> baseml lrwxrwxrwx root/root 0 2020-05-08 11:58 ./usr/lib/debian-med/bin/yn00 -> baseml drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/paml/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/paml/bin/ -rwxr-xr-x root/root 318664 2020-05-08 11:58 ./usr/lib/paml/bin/baseml -rwxr-xr-x root/root 194912 2020-05-08 11:58 ./usr/lib/paml/bin/basemlg -rwxr-xr-x root/root 10440 2020-05-08 11:58 ./usr/lib/paml/bin/chi2 -rwxr-xr-x root/root 434704 2020-05-08 11:58 ./usr/lib/paml/bin/codeml -rwxr-xr-x root/root 186528 2020-05-08 11:58 ./usr/lib/paml/bin/evolver -rwxr-xr-x root/root 252512 2020-05-08 11:58 ./usr/lib/paml/bin/mcmctree -rwxr-xr-x root/root 194600 2020-05-08 11:58 ./usr/lib/paml/bin/pamp -rwxr-xr-x root/root 174232 2020-05-08 11:58 ./usr/lib/paml/bin/yn00 drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/lib/paml/data/ -rw-r--r-- root/root 56 2019-10-18 14:02 ./usr/lib/paml/data/3s.trees -rw-r--r-- root/root 97 2019-10-18 14:02 ./usr/lib/paml/data/4s.trees -rw-r--r-- root/root 299 2019-10-18 14:02 ./usr/lib/paml/data/5s.trees -rw-r--r-- root/root 124 2019-10-18 14:02 ./usr/lib/paml/data/6s.trees -rw-r--r-- root/root 161 2019-10-18 14:02 ./usr/lib/paml/data/9s.trees -rw-r--r-- root/root 1403 2019-10-18 14:02 ./usr/lib/paml/data/MCaa.dat -rw-r--r-- root/root 1781 2019-10-18 14:02 ./usr/lib/paml/data/MCbase.dat -rw-r--r-- root/root 2033 2019-10-18 14:02 ./usr/lib/paml/data/MCbaseRandomTree.dat -rw-r--r-- root/root 4276 2019-10-18 14:02 ./usr/lib/paml/data/MCcodon.dat -rw-r--r-- root/root 493 2020-05-08 11:58 ./usr/lib/paml/data/aaml.ctl -rw-r--r-- root/root 6186 2019-10-18 14:02 ./usr/lib/paml/data/abglobin.nuc -rw-r--r-- root/root 1794 2020-05-08 11:58 ./usr/lib/paml/data/baseml.ctl -rw-r--r-- root/root 5830 2019-10-18 14:02 ./usr/lib/paml/data/brown.nuc -rw-r--r-- root/root 278 2019-10-18 14:02 ./usr/lib/paml/data/brown.rooted.trees -rw-r--r-- root/root 100 2019-10-18 14:02 ./usr/lib/paml/data/brown.trees -rw-r--r-- root/root 2999 2020-05-08 11:58 ./usr/lib/paml/data/codeml.ctl -rw-r--r-- root/root 660 2020-05-08 11:58 ./usr/lib/paml/data/codonml.ctl drwxr-xr-x root/root 0 2019-10-18 13:55 ./usr/lib/paml/data/dat/ -rw-r--r-- root/root 1850 2019-10-18 14:02 ./usr/lib/paml/data/dat/MtZoa.dat -rw-r--r-- root/root 10073 2019-10-18 14:02 ./usr/lib/paml/data/dat/cpREV10.dat -rw-r--r-- root/root 1874 2019-10-18 14:02 ./usr/lib/paml/data/dat/cpREV64.dat -rw-r--r-- root/root 2972 2019-10-18 14:02 ./usr/lib/paml/data/dat/dayhoff-dcmut.dat -rw-r--r-- root/root 5284 2019-10-18 14:02 ./usr/lib/paml/data/dat/dayhoff.dat -rw-r--r-- root/root 1536 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974a.dat -rw-r--r-- root/root 1372 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974c.dat -rw-r--r-- root/root 1130 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974p.dat -rw-r--r-- root/root 1359 2019-10-18 14:02 ./usr/lib/paml/data/dat/g1974v.dat -rw-r--r-- root/root 1681 2019-10-18 14:02 ./usr/lib/paml/data/dat/grantham.dat -rw-r--r-- root/root 2960 2019-10-18 14:02 ./usr/lib/paml/data/dat/jones-dcmut.dat -rw-r--r-- root/root 12131 2019-10-18 14:02 ./usr/lib/paml/data/dat/jones.dat -rw-r--r-- root/root 2713 2019-10-18 14:02 ./usr/lib/paml/data/dat/lg.dat -rw-r--r-- root/root 1258 2019-10-18 14:02 ./usr/lib/paml/data/dat/miyata.dat -rw-r--r-- root/root 4886 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtArt.dat -rw-r--r-- root/root 2370 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtREV24.dat -rw-r--r-- root/root 3844 2019-10-18 14:02 ./usr/lib/paml/data/dat/mtmam.dat -rw-r--r-- root/root 3337 2019-10-18 14:02 ./usr/lib/paml/data/dat/wag.dat -rw-r--r-- root/root 4124 2019-10-18 14:02 ./usr/lib/paml/data/lysozymeSmall.nuc -rw-r--r-- root/root 769 2019-10-18 14:02 ./usr/lib/paml/data/lysozymeSmall.trees -rw-r--r-- root/root 1299 2020-05-08 11:58 ./usr/lib/paml/data/mcmctree.ctl -rw-r--r-- root/root 338 2019-10-18 14:02 ./usr/lib/paml/data/mtCDNApri.trees -rw-r--r-- root/root 70466 2019-10-18 14:02 ./usr/lib/paml/data/mtCDNApri123.txt -rw-r--r-- root/root 11708 2019-10-18 14:02 ./usr/lib/paml/data/mtprim9.nuc -rw-r--r-- root/root 374 2020-05-08 11:58 ./usr/lib/paml/data/pamp.ctl -rw-r--r-- root/root 1008 2019-10-18 14:02 ./usr/lib/paml/data/stewart.aa -rw-r--r-- root/root 143 2019-10-18 14:02 ./usr/lib/paml/data/stewart.trees -rw-r--r-- root/root 719 2020-05-08 11:58 ./usr/lib/paml/data/yn00.ctl drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/share/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/share/doc/paml/ -rw-r--r-- root/root 675 2019-10-18 14:02 ./usr/share/doc/paml/GeneticCode.txt.gz -rw-r--r-- root/root 898 2020-05-08 11:58 ./usr/share/doc/paml/README.Debian -rw-r--r-- root/root 1419 2019-10-18 14:02 ./usr/share/doc/paml/README.txt -rw-r--r-- root/root 1103 2020-05-08 11:58 ./usr/share/doc/paml/changelog.Debian.gz -rw-r--r-- root/root 827 2020-05-08 11:58 ./usr/share/doc/paml/copyright drwxr-xr-x root/root 0 2020-05-08 11:58 ./usr/share/doc/paml/profile.d/ -rw-r--r-- root/root 147 2020-05-08 11:58 ./usr/share/doc/paml/profile.d/paml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 26412 Build-Time: 537 Distribution: groovy-proposed Host Architecture: riscv64 Install-Time: 143 Job: paml_4.9j+dfsg-2.dsc Machine Architecture: riscv64 Package: paml Package-Time: 734 Source-Version: 4.9j+dfsg-2 Space: 26412 Status: successful Version: 4.9j+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-05-09T17:32:38Z Build needed 00:12:14, 26412k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 Scanning for processes to kill in build PACKAGEBUILD-19281531 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 Stopping target for build PACKAGEBUILD-19281531 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19281531 Removing build PACKAGEBUILD-19281531