RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-030 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Nov 00:11:56 ntpdate[1792]: adjust time server 10.211.37.1 offset 0.049421 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13660254 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 Starting target for build PACKAGEBUILD-13660254 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13660254 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 Updating target for build PACKAGEBUILD-13660254 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1064 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8123 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4797 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [116 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [443 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [416 kB] Fetched 16.0 MB in 3s (4074 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: apt-transport-https* The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-7 debconf dpkg dpkg-dev e2fslibs e2fsprogs g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmpx2 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 linux-libc-dev multiarch-support perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv sysvinit-utils tzdata 80 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 452 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 linux-libc-dev amd64 4.13.0-16.19 [954 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libquadmath0 amd64 7.2.0-12ubuntu1 [132 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libitm1 amd64 7.2.0-12ubuntu1 [27.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7-base amd64 7.2.0-12ubuntu1 [18.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc1 amd64 1:7.2.0-12ubuntu1 [39.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libmpx2 amd64 7.2.0-12ubuntu1 [11.7 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libgomp1 amd64 7.2.0-12ubuntu1 [76.4 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libatomic1 amd64 7.2.0-12ubuntu1 [8954 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libasan4 amd64 7.2.0-12ubuntu1 [360 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 liblsan0 amd64 7.2.0-12ubuntu1 [133 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libtsan0 amd64 7.2.0-12ubuntu1 [282 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 libubsan0 amd64 7.2.0-12ubuntu1 [126 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libcilkrts5 amd64 7.2.0-12ubuntu1 [42.5 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 cpp-7 amd64 7.2.0-12ubuntu1 [6728 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libcc1-0 amd64 7.2.0-12ubuntu1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 g++-7 amd64 7.2.0-12ubuntu1 [7554 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 gcc-7 amd64 7.2.0-12ubuntu1 [7414 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcc-7-dev amd64 7.2.0-12ubuntu1 [2377 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++-7-dev amd64 7.2.0-12ubuntu1 [1457 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libstdc++6 amd64 7.2.0-12ubuntu1 [405 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1.1 [241 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libbinutils amd64 2.29.1-6ubuntu1 [502 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils amd64 2.29.1-6ubuntu1 [3344 B] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-common amd64 2.29.1-6ubuntu1 [190 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-6ubuntu1 [1825 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 e2fslibs amd64 1.43.7-1 [157 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 e2fsprogs amd64 1.43.7-1 [498 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libperl5.26 amd64 5.26.1-2ubuntu1 [3535 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl amd64 5.26.1-2ubuntu1 [201 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-base amd64 5.26.1-2ubuntu1 [1389 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libudev1 amd64 235-2ubuntu1 [54.5 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapt-pkg5.0 amd64 1.6~alpha3 [779 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgpg-error0 amd64 1.27-4 [36.8 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.7.9-1 [400 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt amd64 1.6~alpha3 [1144 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 debconf all 1.5.64 [124 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapparmor1 amd64 2.11.0-2ubuntu18 [28.8 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.1 [13.2 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-5ubuntu3 [229 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libselinux1 amd64 2.7-2 [68.3 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd amd64 235-2ubuntu1 [2832 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libsystemd0 amd64 235-2ubuntu1 [196 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd-sysv amd64 235-2ubuntu1 [12.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcomerr2 amd64 1.43.7-1 [11.4 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2 [6916 B] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2 [84.6 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libss2 amd64 1.43.7-1 [11.1 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 libnettle6 amd64 3.3-2 [91.7 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libhogweed4 amd64 3.3-2 [135 kB] Get:63 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libp11-kit0 amd64 0.23.9-2 [187 kB] Get:64 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 pinentry-curses amd64 1.0.0-3 [34.7 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.20.1-2 [491 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2017c-1 [188 kB] Get:70 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgssapi-krb5-2 amd64 1.15.2-2 [121 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5-3 amd64 1.15.2-2 [278 kB] Get:72 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5support0 amd64 1.15.2-2 [31.5 kB] Get:73 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libk5crypto3 amd64 1.15.2-2 [85.4 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.1ubuntu1 [9488 B] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpsl5 amd64 0.18.0-4 [40.7 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu2.1 [193 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 6s (9453 kB/s) (Reading database ... 12676 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13660254 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13660254 --arch=amd64 --dist=bionic-proposed --nolog -A parsinsert_1.04-3.dsc Initiating build PACKAGEBUILD-13660254 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-030.buildd +==============================================================================+ | parsinsert 1.04-3 (amd64) 03 Nov 2017 00:12 | +==============================================================================+ Package: parsinsert Version: 1.04-3 Source Version: 1.04-3 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/parsinsert-3XZrlm/parsinsert-1.04' with '<>' I: NOTICE: Log filtering will replace 'build/parsinsert-3XZrlm' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13660254/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- parsinsert_1.04-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RD75GL/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-RD75GL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RD75GL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RD75GL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RD75GL/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-RD75GL/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (181 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RD75GL/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12671 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10) Filtered Build-Depends: debhelper (>= 10) dpkg-deb: building package 'sbuild-build-depends-parsinsert-dummy' in '/<>/resolver-fz_WEI/apt_archive/sbuild-build-depends-parsinsert-dummy.deb'. Ign:1 copy:/<>/resolver-fz_WEI/apt_archive ./ InRelease Get:2 copy:/<>/resolver-fz_WEI/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-fz_WEI/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-fz_WEI/apt_archive ./ Sources [209 B] Get:5 copy:/<>/resolver-fz_WEI/apt_archive ./ Packages [527 B] Fetched 2855 B in 0s (229 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install parsinsert build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu59 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu59 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-parsinsert-dummy 0 upgraded, 30 newly installed, 1 to remove and 0 not upgraded. Need to get 16.4 MB of archives. After this operation, 61.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-fz_WEI/apt_archive ./ sbuild-build-depends-parsinsert-dummy 0.invalid.0 [856 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-9 [1144 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbsd0 amd64 0.8.6-2 [41.8 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 9.0.12+nmu1ubuntu1 [179 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.4.2-1 [25.2 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.7.6.1-2 [895 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-1 [68.4 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-1 [22.0 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.54.1-1ubuntu1 [1163 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu59 amd64 59.1-3ubuntu1 [7815 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libxml2 amd64 2.9.4+dfsg1-5ubuntu1 [669 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu1 [49.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-1 [81.3 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu1 [1093 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 10.10.5ubuntu1 [876 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.4 MB in 1s (9231 kB/s) (Reading database ... 12671 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12662 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.6-2_amd64.deb ... Unpacking libbsd0:amd64 (0.8.6-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1ubuntu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.4.2-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. 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Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up sbuild-build-depends-parsinsert-dummy (0.invalid.0) ... 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Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-x86-64-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu59_59.1-3ubuntu1 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.2.0-12ubuntu1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.1ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblsan0_7.2.0-12ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpx2_7.2.0-12ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.1-2ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-4 libquadmath0_7.2.0-12ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.20.1-2 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsystemd0_235-2ubuntu1 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-12ubuntu1 libubsan0_7.2.0-12ubuntu1 libudev1_235-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5ubuntu1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsinsert-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu1 systemd-sysv_235-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Aug 23 06:22:40 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./parsinsert_1.04-3.dsc dpkg-source: info: extracting parsinsert in parsinsert-1.04 dpkg-source: info: unpacking parsinsert_1.04.orig.tar.gz dpkg-source: info: unpacking parsinsert_1.04-3.debian.tar.xz dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix-gcc6.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13660254 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13660254 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13660254 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package parsinsert dpkg-buildpackage: info: source version 1.04-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build parsinsert-1.04 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' mv parsinsert ParsInsert || true mv: cannot stat 'parsinsert': No such file or directory dh_auto_clean make -j4 clean make[2]: Entering directory '/<>' rm -f ParsInsert AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o *.fasta *.log *.results *.tree make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 make[2]: Entering directory '/<>' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o AttrList.o AttrList.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Knox_Stddef.o Knox_Stddef.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o PNode.o PNode.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SeqList.o SeqList.cpp In file included from PNode.h:31:0, from SeqList.cpp:27: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s [", label); ^ ParsimonySet.h:431:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" %3d", segCounts[k]); ^ ParsimonySet.h:432:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("]\n"); ^ In file included from PNode.h:31:0, from PNode.cpp:27: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s [", label); ^ ParsimonySet.h:431:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" %3d", segCounts[k]); ^ ParsimonySet.h:432:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("]\n"); ^ AttrList.cpp: In member function ‘int CAttrList::AddHex(const char*, long unsigned int)’: AttrList.cpp:173:30: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=] sprintf(buf, "0x%08X", value); ^ SeqList.cpp: In member function ‘int CSequenceFile::ReadSequenceIndexFile(const char*)’: SeqList.cpp:490:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d [%s]\n", count, name); ^ SeqList.cpp:492:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d\n", count); ^ SeqList.cpp:496:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loaded %d sequences from [%s]\n", count, filename); ^ SeqList.cpp: In member function ‘int CSequenceFile::ReadTaxonomyFile()’: SeqList.cpp:529:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); ^ SeqList.cpp:531:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d\n", seqCount); ^ SeqList.cpp: In member function ‘int CSequenceFile::ReadSequenceFile(int)’: SeqList.cpp:565:72: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); ^ SeqList.cpp:580:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Duplicate sequence found [%s]\n", seq->name.c_str()); ^ SeqList.cpp:605:69: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Loading sequence %d [%s]\n", seqCount, seq->name.c_str()); ^ PNode.cpp: In member function ‘void CPTree::Parse(const char*)’: PNode.cpp:299:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Could not process all the chars in NEWICK file\n"); ^ PNode.cpp:304:63: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Processed %d chars of %d\n", nProcess, totalProcess); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Taxonomy.o Taxonomy.cpp SeqList.cpp: In member function ‘const char* CSequenceItem::ReadSeqHeader(FILE*)’: SeqList.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buffer, sizeof(buffer)-1, f); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqList.cpp: In member function ‘const char* CSequenceItem::ReadSeqData(FILE*)’: SeqList.cpp:229:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buffer, sizeof(buffer)-1, f); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Taxonomy.cpp: In member function ‘int CTaxEntry::Display(const char*, int)’: Taxonomy.cpp:96:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s[%s] %d\n", leader, name.c_str(), count); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ParsInsert.o ParsInsert.cpp ParsInsert.cpp:411:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); ^~~~~~~ ParsInsert.cpp:56:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ ^ ParsInsert.cpp:411:38: note: in expansion of macro ‘VERSION’ DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); ^~~~~~~ ParsInsert.cpp:416:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] DisplayT(USAGE, VERSION, APPNAME); ^~~~~~~ ParsInsert.cpp:56:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] #define VERSION APPNAME " Version 1.04 " __DATE__ " " __TIME__ ^ ParsInsert.cpp:416:25: note: in expansion of macro ‘VERSION’ DisplayT(USAGE, VERSION, APPNAME); ^~~~~~~ In file included from ParsInsert.h:29:0, from ParsInsert.cpp:34: ParsimonySet.h: In member function ‘void CParsimonySet::TraceSegments(const char*)’: ParsimonySet.h:429:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s [", label); ^ ParsimonySet.h:431:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" %3d", segCounts[k]); ^ ParsimonySet.h:432:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("]\n"); ^ ParsInsert.cpp: At global scope: ParsInsert.cpp:92:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *statsName = "PI_Results.log"; ^~~~~~~~~~~~~~~~ ParsInsert.cpp:93:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *logFilename = "ParsInsert.log"; ^~~~~~~~~~~~~~~~ ParsInsert.cpp:94:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *treeFilename = "PI_Tree.tree"; ^~~~~~~~~~~~~~ ParsInsert.cpp:95:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *seqFilename = "PI_Tree.fasta"; ^~~~~~~~~~~~~~~ ParsInsert.cpp: In function ‘int main(int, char**)’: ParsInsert.cpp:247:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s\n", COPYRIGHT); ^ ParsInsert.cpp:288:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Setting Tree Floating Point Precision to %d\n", v); ^ ParsInsert.cpp:388:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("invalid command option '%c'\n", argv[i][1]); ^ ParsInsert.cpp:411:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%s\nCommand Line:[%s]\n", VERSION, cmd.c_str()); ^ ParsInsert.cpp:415:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("ERROR - missing files to process\n"); ^ ParsInsert.cpp:416:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT(USAGE, VERSION, APPNAME); ^ ParsInsert.cpp:424:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" tree file: %s\n", treeFilename); ^ ParsInsert.cpp:429:52: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" tree sequence file: %s\n", seqFilename); ^ ParsInsert.cpp:434:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" mask file: %s\n", maskName); ^ ParsInsert.cpp:438:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Cannot open mask file [%s]", maskName); ^ ParsInsert.cpp:447:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" taxomony index file: %s\n", taxName); ^ ParsInsert.cpp:451:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Cannot open taxomony index FASTA file [%s]", taxName); ^ ParsInsert.cpp:455:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" taxomony index file: %d taxa\n", taxonomy->GetCount()); ^ ParsInsert.cpp:484:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Process Completed: %d sec\n", time(NULL)-start); ^ ParsInsert.cpp: In function ‘int ParsimonyInsertion()’: ParsInsert.cpp:532:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Reading Newick Tree: [%s]\n", treeFilename); ^ ParsInsert.cpp:537:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Error accessing Newick Tree file [%s]\n", treeFilename); ^ ParsInsert.cpp:541:112: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Newick Tree Read Completed: %d taxa, %d sec\n", (tree->nodeList.size()+1)/2, time(NULL)-stage); ^ ParsInsert.cpp:552:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Found duplicate name: [%s]/n", name.c_str()); ^ ParsInsert.cpp:558:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Tree Sequence Reading: [%s]\n", seqFilename); ^ ParsInsert.cpp:564:115: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Tree Sequence Read Completed: %d sequences, %d sec\n", treeSeqfile->seqlist.size(), time(NULL)-stage); ^ ParsInsert.cpp:567:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Reading sequences for insertion: [%s]\n", files[0]); ^ ParsInsert.cpp:573:50: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("No insertion sequences found\n"); ^ ParsInsert.cpp:576:115: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Insert Sequecne Read Completed: %d sequences, %d sec\n", insertSeqfile->GetCount(), time(NULL)-stage); ^ ParsInsert.cpp:579:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Checking Taxa Taxonomy\n"); ^ ParsInsert.cpp:581:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Setting Internal Taxonomy\n"); ^ ParsInsert.cpp:584:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Internal Taxonomy Completed: %d sec\n", time(NULL)-stage); ^ ParsInsert.cpp:587:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Setting internal parsimony sequences ...\n"); ^ ParsInsert.cpp:590:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Parsimony Calculation Completed: %d sec\n", time(NULL)-stage); ^ ParsInsert.cpp:595:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("[%d sec elapsed] Searching for insertion points:\n", time(NULL)-start); ^ ParsInsert.cpp:623:105: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("[%d sec elapsed] Insert Locations Completed: %d sec\n", time(NULL)-start, time(NULL)-stage); ^ ParsInsert.cpp:641:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Writing Newick tree file: [%s]\n", treename.c_str()); ^ ParsInsert.cpp:647:115: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("CalcCost calls[%d] = %d / %d (%d)\n", useCalcCost, nCalcCostFull, nCalcCost,nCalcCost-nCalcCostFull); ^ ParsInsert.cpp:649:97: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Insert Time = %d, %d per hour\n", insertTime, 3600 * inserts.size() / insertTime ); ^ ParsInsert.cpp: In function ‘int CheckTreeSequences(CPTree*, CSequenceFile*)’: ParsInsert.cpp:674:88: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Error accessing Tree Sequencefile [%s]\n", treeSeqfile->fname.c_str()); ^ ParsInsert.cpp:693:90: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("ERROR - tree member sequence is not available [%s]\n", name.c_str()); ^ ParsInsert.cpp: In function ‘int CreateParsimonySets(const char*, CPTree*)’: ParsInsert.cpp:711:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" parsimony index file: %s\n", parsName); ^ ParsInsert.cpp:715:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Cannot open parsimony index FASTA file [%s]", parsName); ^ ParsInsert.cpp:718:79: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" parsimony file: %d internal nodes\n", parsimony->GetCount()); ^ ParsInsert.cpp:755:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Calculating internal parsimony sequences ...\n"); ^ ParsInsert.cpp: In function ‘CPTree* ReadNewickTree(const char*)’: ParsInsert.cpp:861:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Display("Could not open source file: [%s]\n", filename); ^ ParsInsert.cpp:870:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Opening file: %s\t...", filename); ^ ParsInsert.cpp:897:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Display("Opening file: %s\tLines:%d", filename, linecount); ^ ParsInsert.cpp:902:51: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Parsing Newick file: %s\t...", filename); ^ ParsInsert.cpp: In function ‘int CheckLeafTaxonomy(CPTree*)’: ParsInsert.cpp:949:76: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%d of %d nodes are missing taxonomy\n\t", n, nodes.size()); ^ ParsInsert.cpp:955:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" %-12.12s%s", node->title.c_str(), (++count%8 == 0 ? "\n\t" :"")); ^ ParsInsert.cpp:957:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\n"); ^ ParsInsert.cpp: In function ‘int SetInternalTaxonomy(CPTree*)’: ParsInsert.cpp:1091:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("\rSetting Internal Taxonomy %d nodes remaining ", nSeqRemaining); ^ ParsInsert.cpp:1099:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("\n"); ^ ParsInsert.cpp: In function ‘void FindInsertLocations_Serial(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)’: ParsInsert.cpp:1125:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); ^ ParsInsert.cpp:1132:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); ^ ParsInsert.cpp:1170:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] tax.c_str()); ^ ParsInsert.cpp:1187:156: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Searching for position to insert %d sequences in tree of %d nodes. {Setup: %d sec}\n", inserts.size(), tree->nodeList.size(), time(NULL)-start+1); ^ ParsInsert.cpp:1193:111: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("[%10d/%d] {%d sec} [%s]\n", count, tree->nodeList.size(), time(NULL)-start+1, node->title.c_str()); ^ ParsInsert.cpp:1224:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); ^ ParsInsert.cpp: In function ‘void FindInsertLocations(CSequenceFile*, CPNode*, CSequenceItem*, CInsertPos*)’: ParsInsert.cpp:1244:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Error: could not generate Parsimony Set\n"); ^ ParsInsert.cpp: In function ‘void FindInsertLocations(CSequenceFile*, CPTree*, CSequenceFile*, CInsertPosArray&)’: ParsInsert.cpp:1324:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Sequence is already in core tree: %s\n", seq->name.c_str()); ^ ParsInsert.cpp:1331:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Cannot find sequence for %s\n", seq->name.c_str()); ^ ParsInsert.cpp:1343:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("**** Cannot find sequence taxonomy for %s\n", seq->name.c_str()); ^ ParsInsert.cpp:1368:111: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("[%10d/%d] {%d sec} [%s]\n", count, insertSeqfile->seqCount, time(NULL)-start+1, seq->name.c_str()); ^ ParsInsert.cpp:1378:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] tax.c_str()); ^ ParsInsert.cpp:1384:83: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("(%d sec) [%5d skipped]\n", time(NULL)-start_item, nSeqRemaining); ^ ParsInsert.cpp:1386:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("(%d sec)\n", time(NULL)-start_item); ^ ParsInsert.cpp:1394:84: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Insertion of %d sequences in [%d sec]\n", inserts.size(), finish-start+1); ^ ParsInsert.cpp: In function ‘void BuildScoreMatrix()’: ParsInsert.cpp:1432:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("BAD BAD COMPUTER"); ^ ParsInsert.cpp: In function ‘int CalcAncestorParsimony(CPTree*)’: ParsInsert.cpp:1640:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("Calculating Parsimony ..."); ^ ParsInsert.cpp:1644:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("*** Cannot calc parsimony, no sequence file loaded"); ^ ParsInsert.cpp:1658:74: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Applying parsimonious selections back down the tree.\n"); ^ ParsInsert.cpp:1660:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%d nodes were modified\n", changes); ^ ParsInsert.cpp:1684:108: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("\nProcessed %d nodes in %d seconds, %.0f nodes per sec\n", tree->nodeList.size(), delta, npersec); ^ ParsInsert.cpp: In function ‘int ForceNodeParsimony(CPNode*)’: ParsInsert.cpp:1709:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("***** Child not found [%s]\n", node->title.c_str()); ^ ParsInsert.cpp: In function ‘int CalcNodeParsimony(CPNode*)’: ParsInsert.cpp:1748:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("***** Child not found [%s]\n", node->title.c_str()); ^ ParsInsert.cpp:1801:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("\rCalcParsimony %d nodes remaining ", nSeqRemaining); ^ ParsInsert.cpp: In function ‘int WriteParsimonySet(CPNode*, CSequenceFile*)’: ParsInsert.cpp:1829:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayT("\r %d nodes remaining to be written ", nSeqRemaining); ^ ParsInsert.cpp: In function ‘void DisplayInsertLocations(CInsertPosArray&, int)’: ParsInsert.cpp:1880:96: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("======================================================================\n"); ^ ParsInsert.cpp:1884:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] inserts[i]->best.list.size(), tax.c_str()); ^ ParsInsert.cpp:1892:48: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tNO MATCHES found\n"); ^ ParsInsert.cpp:1942:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] iterB->node->title.c_str(), taxBest.c_str()); ^ ParsInsert.cpp:1978:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 0); ^ ParsInsert.cpp:1989:81: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); ^ ParsInsert.cpp:1990:70: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); ^ ParsInsert.cpp:1991:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); ^ ParsInsert.cpp:1993:67: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tFirst[%s]\n", taxFirst.c_str()); ^ ParsInsert.cpp: In function ‘void DisplayBestInsertLocations(CInsertPos*, int)’: ParsInsert.cpp:2010:88: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("======================================================================\n"); ^ ParsInsert.cpp:2013:86: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] item->seq->name.c_str(), item->nSites, item->best.list.size(), tax.c_str()); ^ ParsInsert.cpp:2021:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tNO MATCHES found\n"); ^ ParsInsert.cpp:2072:69: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] iterB->node->title.c_str(), taxBest.c_str()); ^ ParsInsert.cpp:2107:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 0); ^ ParsInsert.cpp:2118:69: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t Seq[%s]\n", marker.c_str(), tax.c_str()); ^ ParsInsert.cpp:2119:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t [%s]\n", "", diff.c_str()); ^ ParsInsert.cpp:2120:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%12.12s\t Best[%s]\n", "", taxBest.c_str()); ^ ParsInsert.cpp:2122:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tFirst[%s]\n", taxFirst.c_str()); ^ ParsInsert.cpp: In function ‘void DisplayRankCounts(const char*, int (*)[4])’: ParsInsert.cpp:2134:109: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\n%s\n _________Precision________ __________Recall__________\n", header); ^ ParsInsert.cpp:2142:91: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] rankNames[r], counts[r][0], counts[r][1], per, counts[r][3], counts[r][2], per2); ^ ParsInsert.cpp: In function ‘void OutputInsertLocations(CInsertPosArray&, int)’: ParsInsert.cpp:2182:92: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("======================================================================\n"); ^ ParsInsert.cpp:2183:90: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\nInsertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->nSites); ^ ParsInsert.cpp:2187:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tNO MATCHES found\n"); ^ ParsInsert.cpp:2231:117: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\t\t%5d [%5f] [%s][%s]\n", iterB->score, dist, iterB->node->title.c_str(), iterB->tax.c_str()); ^ ParsInsert.cpp:2261:118: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\t\t%5d [%3d%%] [%s][%s]\n", iterB->score, per, iterB->node->title.c_str(), iterB->tax.c_str()); ^ ParsInsert.cpp:2268:111: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] iterB->node->title.c_str(),(iterB->node->IsBranchNode()?'^':' '), taxBest.c_str()); ^ ParsInsert.cpp:2307:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] cost, diffs, parts, indel, taxBest.c_str()); ^ ParsInsert.cpp:2324:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%18s[%s]\n", leader.c_str(), taxVoteList[knox].c_str()); ^ ParsInsert.cpp:2331:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("%18s[%s]\n", leader.c_str(), taxBest.c_str()); ^ ParsInsert.cpp:2353:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("no assignment (%d%% < %d%%)", per, scoreThresh); ^ ParsInsert.cpp:2363:72: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL(" Correct Taxonomy:[%s]\n", taxCorrect.c_str()); ^ ParsInsert.cpp:2407:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Taxonomies List:\n"); ^ ParsInsert.cpp: In function ‘int BuildInsertTree(CTreeInserts*, CPTree*)’: ParsInsert.cpp:2647:107: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("[%s] at %d%% does not meet threshold (%d%%)\n", in->seq->name.c_str(), score, 100-scoreThresh); ^ ParsInsert.cpp: In function ‘int SetMyTaxonomy(CPNode*)’: ParsInsert.cpp:2804:89: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); ^ ParsInsert.cpp:2810:85: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), child->title.c_str()); ^ ParsInsert.cpp:2834:80: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("No Taxnomy for [%s][%s]\n", name.c_str(), node->title.c_str()); ^ ParsInsert.cpp: In function ‘double ComparePosition(const char*, CPNode*, CPTree*, CPTree*)’: ParsInsert.cpp:3011:93: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Could not find core position for [%s][%s]\n", core1.c_str(), core2.c_str()); ^ ParsInsert.cpp: In function ‘void ComparePositions(CInsertPosArray&, CPTree*, CPTree*)’: ParsInsert.cpp:3036:92: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("======================================================================\n"); ^ ParsInsert.cpp:3037:112: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\nDistance to Insertion: [%20.20s] [%5d sites]\n", name.c_str(), inserts[i]->best.list.size()); ^ ParsInsert.cpp:3041:67: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tNO MATCHES found for [%s]\n", name.c_str()); ^ ParsInsert.cpp:3054:83: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("\tDistance error from [%20.20s] = %d\n", pname.c_str(), dist); ^ ParsInsert.cpp: In function ‘int FullTree_Initialization()’: ParsInsert.cpp:3069:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Reading Newick Tree: [%s]\n", fullTreeName); ^ ParsInsert.cpp:3073:73: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Error accessing Newick Tree file [%s]\n", fullTreeName); ^ ParsInsert.cpp:3077:86: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] DisplayL("Newick Tree Read Completed: %d taxa\n", (fullTree->nodeList.size()+1)/2); ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o ParsInsert AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o -lm -lc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>' mv ParsInsert parsinsert make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo "Upstream tarball lacks Test.cpp so we can not run the test." Upstream tarball lacks Test.cpp so we can not run the test. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing parsinsert-testdata (in debian/parsinsert-testdata); do_strip: , oemstrip: pkgstriptranslations: processing parsinsert (in debian/parsinsert); do_strip: , oemstrip: pkgstriptranslations: processing parsinsert-dbgsym (in debian/.debhelper/parsinsert/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/parsinsert-testdata/DEBIAN/control, package parsinsert-testdata, directory debian/parsinsert-testdata INFO: pkgstripfiles: waiting for lock (parsinsert-testdata) ... pkgstripfiles: processing control file: debian/parsinsert/DEBIAN/control, package parsinsert, directory debian/parsinsert pkgstripfiles: processing control file: debian/.debhelper/parsinsert/dbgsym-root/DEBIAN/control, package parsinsert-dbgsym, directory debian/.debhelper/parsinsert/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package parsinsert-dbgsym ... pkgstripfiles: No PNG files. pkgstripfiles: Running PNG optimization (using 4 cpus) for package parsinsert ... dpkg-deb: building package 'parsinsert-dbgsym' in 'debian/.debhelper/scratch-space/build-parsinsert/parsinsert-dbgsym_1.04-3_amd64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'parsinsert' in '../parsinsert_1.04-3_amd64.deb'. Renaming parsinsert-dbgsym_1.04-3_amd64.deb to parsinsert-dbgsym_1.04-3_amd64.ddeb pkgstripfiles: Running PNG optimization (using 4 cpus) for package parsinsert-testdata ... pkgstripfiles: No PNG files. dpkg-deb: building package 'parsinsert-testdata' in '../parsinsert-testdata_1.04-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../parsinsert_1.04-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build parsinsert-1.04 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171103-0013 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ parsinsert_1.04-3_amd64.changes: -------------------------------- Format: 1.8 Date: Thu, 10 Aug 2017 20:14:29 -0400 Source: parsinsert Binary: parsinsert parsinsert-testdata Architecture: amd64 all Version: 1.04-3 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nadiya Sitdykova Description: parsinsert - Parsimonious Insertion of unclassified sequences into phylogeneti parsinsert-testdata - Test data for parsinsert Changes: parsinsert (1.04-3) unstable; urgency=medium . * Team upload. . [ Nadiya Sitdykova ] * add autopkgtest test * add info about source of test_data . [ Andreas Tille ] * Moved packaging from SVN to Git * debhelper 10 * Standards-Version: 4.0.1 (no changes needed) * New binary package featuring test data Checksums-Sha1: fec11da91598c3e630e5550a23a314d623286c77 536948 parsinsert-dbgsym_1.04-3_amd64.ddeb 8ddb667f2ceb7ec8c0f71e3a36417faec19792b6 4138628 parsinsert-testdata_1.04-3_all.deb 73d6255e0d2f5d7e2946feb996360d1bf72f8b46 5292 parsinsert_1.04-3_amd64.buildinfo 435e82e992925366522109bdbdf78280d5cb8472 62532 parsinsert_1.04-3_amd64.deb Checksums-Sha256: 6c8063c9574d29ccc3f0ed1258a9877cf6832446bb096c57d13d82605c1317bb 536948 parsinsert-dbgsym_1.04-3_amd64.ddeb 48dd4c916892bb816742d8f32ee2fae06b5603f6201ea7e75b3b73e4501188e5 4138628 parsinsert-testdata_1.04-3_all.deb 4290b71b323c1f9c375781c9270c95b6fd821c7ba489520f7ea512402a9ca1e5 5292 parsinsert_1.04-3_amd64.buildinfo 3e39195af0a2d3f35426369c49ed06a8b2f2aac02e791ec3355b53aa1a5dc3e4 62532 parsinsert_1.04-3_amd64.deb Files: 6ba0a831409f2459ffff171aff2a47cb 536948 debug optional parsinsert-dbgsym_1.04-3_amd64.ddeb 5010278eaf0fe65bd6fb158590aa91d7 4138628 science optional parsinsert-testdata_1.04-3_all.deb dca9bca0c6d76fad484cbd89a7a243b3 5292 science optional parsinsert_1.04-3_amd64.buildinfo b65c3bfc8d40d05c6220e1c59677eb3a 62532 science optional parsinsert_1.04-3_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ parsinsert-testdata_1.04-3_all.deb ---------------------------------- new debian package, version 2.0. size 4138628 bytes: control archive=976 bytes. 734 bytes, 18 lines control 682 bytes, 8 lines md5sums Package: parsinsert-testdata Source: parsinsert Version: 1.04-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4315 Enhances: parsinsert Section: science Priority: optional Homepage: http://sourceforge.net/projects/parsinsert/ Description: Test data for parsinsert ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm. . This package provides test data enabling users to reproduce autopkgtest on a local installation. drwxr-xr-x root/root 0 2017-08-11 00:14 ./ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/parsinsert-testdata/ -rw-r--r-- root/root 558 2017-08-11 00:14 ./usr/share/doc/parsinsert-testdata/changelog.Debian.gz -rw-r--r-- root/root 985 2017-08-11 00:14 ./usr/share/doc/parsinsert-testdata/copyright drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/parsinsert/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/ -rw-r--r-- root/root 2344503 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/core_rdp.fasta.gz -rw-r--r-- root/root 139496 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/core_rdp.ntree.gz -rw-r--r-- root/root 564 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/lanemask.txt.gz -rw-r--r-- root/root 1352615 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/rdp.taxonomy.gz -rw-r--r-- root/root 15990 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/right_results.gz -rw-r--r-- root/root 552248 2017-08-11 00:14 ./usr/share/doc/parsinsert/test_data/set1000.fasta.gz parsinsert_1.04-3_amd64.deb --------------------------- new debian package, version 2.0. size 62532 bytes: control archive=896 bytes. 728 bytes, 15 lines control 414 bytes, 6 lines md5sums Package: parsinsert Version: 1.04-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 165 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Suggests: parsinsert-testdata Section: science Priority: optional Homepage: http://sourceforge.net/projects/parsinsert/ Description: Parsimonious Insertion of unclassified sequences into phylogenetic trees ParsInsert efficiently produces both a phylogenetic tree and taxonomic classification for sequences for microbial community sequence analysis. This is a C++ implementation of the Parsimonious Insertion algorithm. drwxr-xr-x root/root 0 2017-08-11 00:14 ./ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/bin/ -rwxr-xr-x root/root 153856 2017-08-11 00:14 ./usr/bin/parsinsert drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/doc/parsinsert/ -rw-r--r-- root/root 341 2017-08-11 00:14 ./usr/share/doc/parsinsert/README.test -rw-r--r-- root/root 558 2017-08-11 00:14 ./usr/share/doc/parsinsert/changelog.Debian.gz -rw-r--r-- root/root 985 2017-08-11 00:14 ./usr/share/doc/parsinsert/copyright -rw-r--r-- root/root 491 2017-08-11 00:14 ./usr/share/doc/parsinsert/run-unit-test drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/man/ drwxr-xr-x root/root 0 2017-08-11 00:14 ./usr/share/man/man1/ -rw-r--r-- root/root 710 2017-08-11 00:14 ./usr/share/man/man1/parsinsert.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 122380 Build-Time: 28 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 12 Job: parsinsert_1.04-3.dsc Machine Architecture: amd64 Package: parsinsert Package-Time: 42 Source-Version: 1.04-3 Space: 122380 Status: successful Version: 1.04-3 -------------------------------------------------------------------------------- Finished at 20171103-0013 Build needed 00:00:42, 122380k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 Scanning for processes to kill in build PACKAGEBUILD-13660254 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 Stopping target for build PACKAGEBUILD-13660254 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13660254 Removing build PACKAGEBUILD-13660254