https://launchpad.net/ubuntu/+source/parsnp/1.2+dfsg-5/+build/15228290 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-014 4.4.0-131-generic #157-Ubuntu SMP Thu Jul 12 15:48:43 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 3 Aug 17:18:03 ntpdate[1852]: adjust time server 10.211.37.1 offset -0.003582 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15228290 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-15228290 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15228290 Starting target for build PACKAGEBUILD-15228290 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15228290 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15228290 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15228290 Updating target for build PACKAGEBUILD-15228290 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [982 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8478 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5038 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 Packages [89.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [46.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 Packages [452 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [229 kB] Fetched 16.3 MB in 7s (2231 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 108 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 71.8 MB of archives. After this operation, 92.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-4ubuntu1 [73.9 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 debianutils arm64 4.8.6 [84.7 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu2 [545 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdutils arm64 1:2.32-0.1ubuntu1 [54.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 tar arm64 1.30+dfsg-2 [214 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg arm64 1.19.0.5ubuntu3 [1096 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libext2fs2 arm64 1.44.3-1 [138 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fsprogs arm64 1.44.3-1 [351 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-4ubuntu1 [154 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libperl5.26 arm64 5.26.2-6 [3318 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl arm64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-base arm64 5.26.2-6 [1237 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 sed arm64 4.5-1 [177 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuuid1 arm64 2.32-0.1ubuntu1 [18.4 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblkid1 arm64 2.32-0.1ubuntu1 [108 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfdisk1 arm64 2.32-0.1ubuntu1 [141 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-4ubuntu1 [107 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre3 arm64 2:8.39-11 [207 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libselinux1 arm64 2.8-1build1 [57.7 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmount1 arm64 2.32-0.1ubuntu1 [118 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsmartcols1 arm64 2.32-0.1ubuntu1 [73.0 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 fdisk arm64 2.32-0.1ubuntu1 [95.9 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 util-linux arm64 2.32-0.1ubuntu1 [831 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgomp1 arm64 8.2.0-2ubuntu1 [69.6 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libitm1 arm64 8.2.0-2ubuntu1 [24.4 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-8-base arm64 8.2.0-2ubuntu1 [18.3 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgcc1 arm64 1:8.2.0-2ubuntu1 [34.3 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 liblsan0 arm64 8.2.0-2ubuntu1 [120 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libtsan0 arm64 8.2.0-2ubuntu1 [269 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcc1-0 arm64 8.2.0-2ubuntu1 [36.3 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libatomic1 arm64 8.2.0-2ubuntu1 [9140 B] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libstdc++6 arm64 8.2.0-2ubuntu1 [372 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblz4-1 arm64 1.8.2-1ubuntu1 [75.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libudev1 arm64 239-7ubuntu2 [52.8 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~alpha2 [763 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 debconf all 1.5.69 [121 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgpg-error0 arm64 1.32-1 [48.6 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcrypt20 arm64 1.8.3-1ubuntu1 [326 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgv arm64 2.2.8-1ubuntu1 [166 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libseccomp2 arm64 2.3.3-3ubuntu1 [34.7 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~alpha2 [1136 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapparmor1 arm64 2.12-4ubuntu7 [30.1 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu2 [36.0 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-1 arm64 0~20171227-0.1 [18.1 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcryptsetup12 arm64 2:2.0.3-6ubuntu1 [116 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkmod2 arm64 25-1ubuntu1 [33.9 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 mount arm64 2.32-0.1ubuntu1 [95.5 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-4ubuntu1 [80.8 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps7 arm64 2:3.3.15-2ubuntu1 [29.1 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 procps arm64 2:3.3.15-2ubuntu1 [217 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd arm64 239-7ubuntu2 [2754 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsystemd0 arm64 239-7ubuntu2 [197 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd-sysv arm64 239-7ubuntu2 [14.1 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcom-err2 arm64 1.44.3-1 [8624 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsepol1 arm64 2.8-1 [207 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage-common all 2.8-1build1 [7000 B] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage1 arm64 2.8-1build1 [70.8 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libss2 arm64 1.44.3-1 [9972 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 libunistring2 arm64 0.9.10-1ubuntu1 [370 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn2-0 arm64 2.0.4-2.2 [47.3 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.12-2 [138 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtasn1-6 arm64 4.13-3 [32.1 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libncurses5 arm64 6.1+20180210-4ubuntu1 [77.1 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-4ubuntu1 [96.3 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-4ubuntu1 [70.1 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn11 arm64 1.33-2.2ubuntu1 [45.0 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsqlite3-0 arm64 3.24.0-1 [434 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.1 arm64 1.1.0g-2ubuntu5 [914 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssl arm64 1.1.0g-2ubuntu5 [505 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libpng16-16 arm64 1.6.34-2 [162 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-common arm64 2.31.1-2ubuntu1 [194 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils arm64 2.31.1-2ubuntu1 [3360 B] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-2ubuntu1 [2176 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbinutils arm64 2.31.1-2ubuntu1 [463 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 libisl19 arm64 0.20-1 [520 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 cpp-8 arm64 8.2.0-2ubuntu1 [5711 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp arm64 4:8.1.0-2ubuntu1 [27.7 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libasan5 arm64 8.2.0-2ubuntu1 [337 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libubsan1 arm64 8.2.0-2ubuntu1 [113 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgcc-8-dev arm64 8.2.0-2ubuntu1 [855 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-8 arm64 8.2.0-2ubuntu1 [6465 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc arm64 4:8.1.0-2ubuntu1 [5224 B] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libstdc++-8-dev arm64 8.2.0-2ubuntu1 [1509 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 g++-8 arm64 8.2.0-2ubuntu1 [6547 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++ arm64 4:8.1.0-2ubuntu1 [1588 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 make arm64 4.2.1-1.1 [146 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:102 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan4 arm64 7.3.0-27ubuntu1 [335 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan0 arm64 7.3.0-27ubuntu1 [117 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/universe arm64 g++-7 arm64 7.3.0-27ubuntu1 [6146 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7 arm64 7.3.0-27ubuntu1 [6000 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-7-dev arm64 7.3.0-27ubuntu1 [1463 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-7-dev arm64 7.3.0-27ubuntu1 [834 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-7 arm64 7.3.0-27ubuntu1 [5333 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7-base arm64 7.3.0-27ubuntu1 [18.9 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fslibs arm64 1.44.3-1 [2704 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main arm64 pinentry-curses arm64 1.1.0-1build2 [32.4 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnpth0 arm64 1.6-1 [7440 B] Get:113 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg arm64 2.2.8-1ubuntu1 [403 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgconf arm64 2.2.8-1ubuntu1 [106 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg-agent arm64 2.2.8-1ubuntu1 [190 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargon2-0 arm64 0~20171227-0.1 [4532 B] Get:117 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcomerr2 arm64 1.44.3-1 [2704 B] Get:118 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/main arm64 linux-libc-dev arm64 4.17.0-6.7 [988 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.8 MB in 3s (27.1 MB/s) (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_arm64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:arm64. (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_arm64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_arm64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_arm64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_arm64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_arm64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12599 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15228290 arm64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15228290 --arch=arm64 --dist=cosmic-proposed --nolog parsnp_1.2+dfsg-5.dsc Initiating build PACKAGEBUILD-15228290 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-131-generic #157-Ubuntu SMP Thu Jul 12 15:48:43 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-014.buildd +==============================================================================+ | parsnp 1.2+dfsg-5 (arm64) 03 Aug 2018 17:19 | +==============================================================================+ Package: parsnp Version: 1.2+dfsg-5 Source Version: 1.2+dfsg-5 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/parsnp-4pyC8J/parsnp-1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/parsnp-4pyC8J' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15228290/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- parsnp_1.2+dfsg-5.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-dccM8D/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-dccM8D/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dccM8D/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-dccM8D/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dccM8D/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-dccM8D/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-dccM8D/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13597 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools, cython, libmuscle-dev Filtered Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools, cython, libmuscle-dev dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<>/resolver-dT2rhl/apt_archive/sbuild-build-depends-parsnp-dummy.deb'. Ign:1 copy:/<>/resolver-dT2rhl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-dT2rhl/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-dT2rhl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-dT2rhl/apt_archive ./ Sources [246 B] Get:5 copy:/<>/resolver-dT2rhl/apt_archive ./ Packages [564 B] Fetched 2929 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install parsnp build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libmpdec2 libmuscle-dev libmuscle1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libmpdec2 libmuscle-dev libmuscle1 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal sbuild-build-depends-parsnp-dummy 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 59.9 MB of archives. After this operation, 176 MB of additional disk space will be used. 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cython arm64 0.28.4-1 [1819 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtool all 2.4.6-2.1build1 [196 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 19 [16.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-6build1 [823 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 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delaying package configuration, since apt-utils is not installed Fetched 59.9 MB in 3s (22.9 MB/s) Selecting previously unselected package libpython3.6-minimal:arm64. (Reading database ... 13597 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-1_arm64.deb ... Unpacking libpython3.6-minimal:arm64 (3.6.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.5-3_arm64.deb ... Unpacking libexpat1:arm64 (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-1_arm64.deb ... Unpacking python3.6-minimal (3.6.6-1) ... Setting up libpython3.6-minimal:arm64 (3.6.6-1) ... Setting up libexpat1:arm64 (2.2.5-3) ... Setting up python3.6-minimal (3.6.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13844 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_arm64.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... 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Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:arm64 (1:5.33-3) ... Setting up libcroco3:arm64 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:arm64 (2.2.5-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libmuscle1 (3.7+4565-4) ... Setting up libpython2.7-stdlib:arm64 (2.7.15-3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libpython3.6-stdlib:arm64 (3.6.6-1) ... Setting up python3.6 (3.6.6-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libmuscle-dev (3.7+4565-4) ... Setting up python2.7 (2.7.15-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:arm64 (2.7.15-3) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:arm64 (2.7.15-3) ... Setting up libpython2.7-dev:arm64 (2.7.15-3) ... Setting up python2.7-dev (2.7.15-3) ... Setting up libtool (2.4.6-2.1build1) ... Setting up libpython3-stdlib:arm64 (3.6.6-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:arm64 (2.7.15-3) ... Setting up libpython-stdlib:arm64 (2.7.15-3) ... Setting up python2-dev (2.7.15-3) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libpython-dev:arm64 (2.7.15-3) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:arm64 (2.7.15-3) ... Setting up python-pkg-resources (39.2.0-1) ... Setting up cython (0.28.4-1) ... Setting up dh-python (3.20180723) ... Setting up python-all (2.7.15-3) ... Setting up python-setuptools (39.2.0-1) ... Setting up python-all-dev (2.7.15-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-131-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-2ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-27ubuntu1 g++-8_8.2.0-2ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-8_8.2.0-2ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.2.0-2ubuntu1 libstdc++6_8.2.0-2ubuntu1 linux-libc-dev_4.17.0-6.7 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-2ubuntu1 binutils-aarch64-linux-gnu_2.31.1-2ubuntu1 binutils-common_2.31.1-2ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:8.1.0-2ubuntu1 cpp-7_7.3.0-27ubuntu1 cpp-8_8.2.0-2ubuntu1 cython_0.28.4-1 dash_0.5.8-2.10 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180723 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:8.1.0-2ubuntu1 g++-7_7.3.0-27ubuntu1 g++-8_8.2.0-2ubuntu1 gcc_4:8.1.0-2ubuntu1 gcc-7_7.3.0-27ubuntu1 gcc-7-base_7.3.0-27ubuntu1 gcc-8_8.2.0-2ubuntu1 gcc-8-base_8.2.0-2ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu7 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-27ubuntu1 libasan5_8.2.0-2ubuntu1 libassuan0_2.5.1-2 libatomic1_8.2.0-2ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-2ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-2ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.3-6ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-27ubuntu1 libgcc-8-dev_8.2.0-2ubuntu1 libgcc1_1:8.2.0-2ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.57.2-1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.2.0-2ubuntu1 libgpg-error0_1.32-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.4-2.2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-1 libitm1_8.2.0-2ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-2ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libmuscle-dev_3.7+4565-4 libmuscle1_3.7+4565-4 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-3 libpython2.7-dev_2.7.15-3 libpython2.7-minimal_2.7.15-3 libpython2.7-stdlib_2.7.15-3 libpython3-stdlib_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-27ubuntu1 libstdc++-8-dev_8.2.0-2ubuntu1 libstdc++6_8.2.0-2ubuntu1 libsystemd0_239-7ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libtsan0_8.2.0-2ubuntu1 libubsan0_7.3.0-27ubuntu1 libubsan1_8.2.0-2ubuntu1 libudev1_239-7ubuntu2 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-6.7 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.4-2 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_39.2.0-1 python-setuptools_39.2.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-3 python2.7-dev_2.7.15-3 python2.7-minimal_2.7.15-3 python3_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7ubuntu2 systemd-sysv_239-7ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Aug 3 13:25:48 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-5.dsc dpkg-source: info: extracting parsnp in parsnp-1.2+dfsg dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking parsnp_1.2+dfsg-5.debian.tar.xz dpkg-source: info: applying fix_libmuscle_path.patch dpkg-source: info: applying fix_setup.py dpkg-source: info: applying fix_install_path.patch dpkg-source: info: applying avoid_rpath.patch dpkg-source: info: applying add_missing_interpreter_line.patch dpkg-source: info: applying proper_calls_to_tools.patch dpkg-source: info: applying drop_m64.patch dpkg-source: info: applying fix_build_with_as-needed.patch dpkg-source: info: applying non-versioned-libs.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15228290 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15228290 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15228290 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package parsnp dpkg-buildpackage: info: source version 1.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build parsnp-1.2+dfsg dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2 dh_auto_clean dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_clean: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py clean -a running clean 'build/lib.linux-aarch64-2.7' does not exist -- can't clean it 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ dh_clean debian/rules build-arch dh build-arch --with python2 dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:3: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory, src/Makefile.am:4: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/parsnp-1.2+dfsg' dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7 configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking libMUSCLE/muscle.h usability... yes checking libMUSCLE/muscle.h presence... yes checking for libMUSCLE/muscle.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/parsnp-1.2+dfsg' Making all in src make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/parsnp-1.2+dfsg' make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/parsnp-1.2+dfsg' Making check in src make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/parsnp-1.2+dfsg' make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/parsnp-1.2+dfsg' dh_auto_install make -j4 install DESTDIR=/<>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>/parsnp-1.2+dfsg' Making install in src make[3]: Entering directory '/<>/parsnp-1.2+dfsg/src' make[4]: Entering directory '/<>/parsnp-1.2+dfsg/src' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/parsnp-1.2+dfsg/debian/parsnp/usr/bin' /usr/bin/install -c parsnp '/<>/parsnp-1.2+dfsg/debian/parsnp/usr/bin' make[4]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[3]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[3]: Entering directory '/<>/parsnp-1.2+dfsg' make[4]: Entering directory '/<>/parsnp-1.2+dfsg' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/parsnp-1.2+dfsg' make[3]: Leaving directory '/<>/parsnp-1.2+dfsg' make[2]: Leaving directory '/<>/parsnp-1.2+dfsg' # The actual user interface is the Python script so move the binary to /usr/lib mkdir -p debian/parsnp/usr/lib/parsnp mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_python2 -a I: dh_python2 tools:113: replacing shebang in debian/parsnp/usr/share/parsnp/Parsnp.py dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>/parsnp-1.2+dfsg' dh_fixperms chmod -x debian/parsnp/usr/share/parsnp/template.ini make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing parsnp (in debian/parsnp); do_strip: , oemstrip: pkgstriptranslations: processing parsnp-dbgsym (in debian/.debhelper/parsnp/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/parsnp/DEBIAN/control, package parsnp, directory debian/parsnp pkgstripfiles: Running PNG optimization (using 4 cpus) for package parsnp ... pkgstripfiles: No PNG files. dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-5_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/parsnp/dbgsym-root/DEBIAN/control, package parsnp-dbgsym, directory debian/.debhelper/parsnp/dbgsym-root dpkg-deb: building package 'parsnp-dbgsym' in 'debian/.debhelper/scratch-space/build-parsnp/parsnp-dbgsym_1.2+dfsg-5_arm64.deb'. Renaming parsnp-dbgsym_1.2+dfsg-5_arm64.deb to parsnp-dbgsym_1.2+dfsg-5_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../parsnp_1.2+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build parsnp-1.2+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180803-1721 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ parsnp_1.2+dfsg-5_arm64.changes: -------------------------------- Format: 1.8 Date: Wed, 18 Jul 2018 13:17:32 +0200 Source: parsnp Binary: parsnp Architecture: arm64 Version: 1.2+dfsg-5 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: parsnp - rapid core genome multi-alignment Changes: parsnp (1.2+dfsg-5) unstable; urgency=medium . * Build-Depends: dh-python * libmuscle-3.7-dev is now libmuscle-dev Checksums-Sha1: 3fd4af651647f2c6958e772a01389e5f39ef4cde 1310968 parsnp-dbgsym_1.2+dfsg-5_arm64.ddeb 57cba5d7f5bac958b30f2128e89f1ebcbc5b37a7 6296 parsnp_1.2+dfsg-5_arm64.buildinfo e47f708e2983332f61e515eda76d4bfc19c1160f 521084 parsnp_1.2+dfsg-5_arm64.deb Checksums-Sha256: 57b3ccf0c062230da64cb75171ebc826d938944184f4a429397475e9eb55b320 1310968 parsnp-dbgsym_1.2+dfsg-5_arm64.ddeb d8416440be6b3705a5d10088961eaa4ef32f94b4800fdeb8adf528d049216898 6296 parsnp_1.2+dfsg-5_arm64.buildinfo 8f60f8fc41ede4031e0a9807d888cdfa50cd5d7e8435bb9decac3ca58037011f 521084 parsnp_1.2+dfsg-5_arm64.deb Files: 7c301e8582058e2ac3c7e0a8fe0bf2ae 1310968 debug optional parsnp-dbgsym_1.2+dfsg-5_arm64.ddeb 06da32e56be5d5c4de7ed275cf01ff9b 6296 science optional parsnp_1.2+dfsg-5_arm64.buildinfo 1df276f455349a5d309d41fcaecf7f0e 521084 science optional parsnp_1.2+dfsg-5_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ parsnp_1.2+dfsg-5_arm64.deb --------------------------- new debian package, version 2.0. size 521084 bytes: control archive=2700 bytes. 1079 bytes, 19 lines control 5790 bytes, 58 lines md5sums 173 bytes, 9 lines * postinst #!/bin/sh 251 bytes, 14 lines * prerm #!/bin/sh Package: parsnp Version: 1.2+dfsg-5 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 869 Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python:any, python-numpy, fasttree, mummer, phipack Recommends: python-dendropy Section: science Priority: optional Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html Description: rapid core genome multi-alignment Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction. drwxr-xr-x root/root 0 2018-07-18 11:17 ./ drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/ drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/bin/ lrwxrwxrwx root/root 0 2018-07-18 11:17 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/parsnp/ -rwxr-xr-x root/root 276608 2018-07-18 11:17 ./usr/lib/parsnp/parsnp drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp/ -rw-r--r-- root/root 633 2018-07-18 11:17 ./usr/share/doc/parsnp/changelog.Debian.gz -rw-r--r-- root/root 2095 2018-07-18 11:17 ./usr/share/doc/parsnp/copyright drwxr-xr-x root/root 0 2018-07-18 11:17 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| Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 30344 Build-Time: 102 Distribution: cosmic-proposed Host Architecture: arm64 Install-Time: 53 Job: parsnp_1.2+dfsg-5.dsc Machine Architecture: arm64 Package: parsnp Package-Time: 157 Source-Version: 1.2+dfsg-5 Space: 30344 Status: successful Version: 1.2+dfsg-5 -------------------------------------------------------------------------------- Finished at 20180803-1721 Build needed 00:02:37, 30344k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15228290 Scanning for processes to kill in build PACKAGEBUILD-15228290