RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-14 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_141 python-lpbuildd_141 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 16 Jan 05:10:26 ntpdate[1902]: adjust time server 10.211.37.1 offset 0.030998 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11866796', '/home/buildd/filecache-default/94f0b0f826e99ad354ce9a7a99ba3c310ddcc327'] Unpacking chroot for build PACKAGEBUILD-11866796 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11866796'] Mounting chroot for build PACKAGEBUILD-11866796 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11866796', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11866796 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11866796', 'amd64'] Updating debian chroot for build PACKAGEBUILD-11866796 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 Packages [1235 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [589 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe amd64 Packages [8088 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4679 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 Packages [90.6 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [49.8 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 Packages [309 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [145 kB] Fetched 15.7 MB in 6s (2574 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcilkrts5 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libisl15 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblsan0 liblzma5 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpng16-16 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 110 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 MB of archives. After this operation, 41.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main amd64 base-files amd64 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main amd64 debianutils amd64 4.8.1 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 bash amd64 4.4-2ubuntu1 [624 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 bsdutils amd64 1:2.29-1ubuntu2 [55.3 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 diffutils amd64 1:3.5-3 [166 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 findutils amd64 4.6.0+git+20161106-1 [282 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 grep amd64 2.27-1 [154 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc6-dev amd64 2.24-7ubuntu2 [2274 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc-dev-bin amd64 2.24-7ubuntu2 [68.5 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 linux-libc-dev amd64 4.9.0-12.13 [872 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main amd64 libquadmath0 amd64 6.3.0-2ubuntu1 [132 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main amd64 libitm1 amd64 6.3.0-2ubuntu1 [27.9 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6-base amd64 6.3.0-2ubuntu1 [17.7 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc1 amd64 1:6.3.0-2ubuntu1 [38.1 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main amd64 libcc1-0 amd64 6.3.0-2ubuntu1 [31.1 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main amd64 binutils amd64 2.27.90.20170114-1ubuntu1 [2434 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main amd64 libgomp1 amd64 6.3.0-2ubuntu1 [74.0 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main amd64 libatomic1 amd64 6.3.0-2ubuntu1 [9170 B] Get:19 http://ftpmaster.internal/ubuntu zesty/main amd64 libasan3 amd64 6.3.0-2ubuntu1 [316 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main amd64 liblsan0 amd64 6.3.0-2ubuntu1 [117 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main amd64 libtsan0 amd64 6.3.0-2ubuntu1 [261 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 libubsan0 amd64 6.3.0-2ubuntu1 [108 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 libcilkrts5 amd64 6.3.0-2ubuntu1 [40.9 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpx2 amd64 6.3.0-2ubuntu1 [11.5 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 g++-6 amd64 6.3.0-2ubuntu1 [7392 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.3.0-2ubuntu1 [1423 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.3.0-2ubuntu1 [2308 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6 amd64 6.3.0-2ubuntu1 [7167 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp-6 amd64 6.3.0-2ubuntu1 [6611 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++6 amd64 6.3.0-2ubuntu1 [402 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 zlib1g amd64 1:1.2.8.dfsg-4ubuntu1 [50.9 kB] Get:32 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1 [240 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 libisl15 amd64 0.18-1 [545 kB] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc6 amd64 2.24-7ubuntu2 [2587 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libuuid1 amd64 2.29-1ubuntu2 [14.7 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main amd64 libblkid1 amd64 2.29-1ubuntu2 [110 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main amd64 libfdisk1 amd64 2.29-1ubuntu2 [144 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main amd64 libselinux1 amd64 2.6-3 [67.8 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main amd64 util-linux amd64 2.29-1ubuntu2 [911 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main amd64 mount amd64 2.29-1ubuntu2 [129 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-modules-5.24 all 5.24.1~rc4-1 [2663 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main amd64 libperl5.24 amd64 5.24.1~rc4-1 [3471 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main amd64 perl amd64 5.24.1~rc4-1 [219 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-base amd64 5.24.1~rc4-1 [1341 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main amd64 sed amd64 4.3-3 [178 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 tar amd64 1.29b-1.1 [232 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 base-passwd amd64 3.5.42 [48.4 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main amd64 init-system-helpers all 1.46 [37.3 kB] Get:49 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libc-bin amd64 2.24-7ubuntu2 [635 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzma5 amd64 5.2.2-1.2 [91.0 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main amd64 libapt-pkg5.0 amd64 1.4~beta3ubuntu1 [779 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main amd64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main amd64 apt amd64 1.4~beta3ubuntu1 [1072 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main amd64 libapparmor1 amd64 2.10.95-4ubuntu5.2 [30.2 kB] Get:56 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgpg-error0 amd64 1.26-1 [34.7 kB] Get:57 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgcrypt20 amd64 1.7.5-3 [399 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main amd64 libmount1 amd64 2.29-1ubuntu2 [119 kB] Get:59 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu1 [37.5 kB] Get:60 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd amd64 232-10ubuntu1 [2358 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsystemd0 amd64 232-10ubuntu1 [211 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main amd64 init amd64 1.46 [5320 B] Get:63 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 systemd-sysv amd64 232-10ubuntu1 [13.9 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main amd64 libsepol1 amd64 2.6-2 [220 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main amd64 libustr-1.0-1 amd64 1.0.4-6 [66.1 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main amd64 libsemanage-common all 2.6-2 [6794 B] Get:67 http://ftpmaster.internal/ubuntu zesty/main amd64 libsemanage1 amd64 2.6-2 [82.6 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main amd64 libsmartcols1 amd64 2.29-1ubuntu2 [69.4 kB] Get:69 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libudev1 amd64 232-10ubuntu1 [57.3 kB] Get:70 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 multiarch-support amd64 2.24-7ubuntu2 [6816 B] Get:71 http://ftpmaster.internal/ubuntu zesty/main amd64 tzdata all 2016j-2 [204 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main amd64 libdevmapper1.02.1 amd64 2:1.02.136-1ubuntu1 [135 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main amd64 dmsetup amd64 2:1.02.136-1ubuntu1 [71.7 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [40.9 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [176 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main amd64 libassuan0 amd64 2.4.3-2 [34.5 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main amd64 libhogweed4 amd64 3.3-1 [135 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main amd64 libnettle6 amd64 3.3-1 [92.4 kB] Get:79 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libp11-kit0 amd64 0.23.3-3 [107 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main amd64 libtasn1-6 amd64 4.9-5 [35.4 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main amd64 libgnutls30 amd64 3.5.6-4ubuntu2 [626 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [29.2 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [87.2 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [48.0 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [107 kB] Get:86 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libsqlite3-0 amd64 3.16.2-1 [486 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [202 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [15.2 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1ubuntu1 [96.8 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main amd64 libksba8 amd64 1.3.5-2 [92.6 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main amd64 libsasl2-modules-db amd64 2.1.27~72-g88d82a3+dfsg-1 [15.1 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main amd64 libsasl2-2 amd64 2.1.27~72-g88d82a3+dfsg-1 [48.8 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu5 [161 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main amd64 libnpth0 amd64 1.3-1 [8054 B] Get:95 http://ftpmaster.internal/ubuntu zesty/main amd64 libslang2 amd64 2.3.1-5ubuntu1 [422 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu10 [1082 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main amd64 pinentry-curses amd64 1.0.0-1 [32.6 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB] Get:99 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi-krb5-2 amd64 1.15-1 [120 kB] Get:100 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-3 amd64 1.15-1 [275 kB] Get:101 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5support0 amd64 1.15-1 [31.9 kB] Get:102 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libk5crypto3 amd64 1.15-1 [84.8 kB] Get:103 http://ftpmaster.internal/ubuntu zesty/main amd64 libcurl3-gnutls amd64 7.51.0-1ubuntu1 [188 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main amd64 apt-transport-https amd64 1.4~beta3ubuntu1 [33.9 kB] Get:105 http://ftpmaster.internal/ubuntu zesty/main amd64 openssl amd64 1.0.2g-1ubuntu10 [491 kB] Get:106 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 ca-certificates all 20161130 [193 kB] Get:107 http://ftpmaster.internal/ubuntu zesty/main amd64 libpng16-16 amd64 1.6.28-1 [172 kB] Get:108 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 advancecomp amd64 1.23-1 [197 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp amd64 4:6.2.1-1ubuntu1 [27.4 kB] Get:110 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc amd64 4:6.2.1-1ubuntu1 [5170 B] Get:111 http://ftpmaster.internal/ubuntu zesty/main amd64 g++ amd64 4:6.2.1-1ubuntu1 [1478 B] Get:112 http://ftpmaster.internal/ubuntu zesty/main amd64 pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 MB in 5s (10.0 MB/s) (Reading database ... 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Setting up binutils (2.27.90.20170114-1ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:amd64 (2.24-7ubuntu2) ... Setting up libslang2:amd64 (2.3.1-5ubuntu1) ... Setting up libassuan0:amd64 (2.4.3-2) ... Setting up libitm1:amd64 (6.3.0-2ubuntu1) ... Setting up libk5crypto3:amd64 (1.15-1) ... Setting up libgcc-6-dev:amd64 (6.3.0-2ubuntu1) ... Setting up libstdc++-6-dev:amd64 (6.3.0-2ubuntu1) ... Setting up libwind0-heimdal:amd64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhogweed4:amd64 (3.3-1) ... Setting up libisl15:amd64 (0.18-1) ... Setting up pinentry-curses (1.0.0-1) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11866796', 'amd64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=zesty-proposed', '--purge=never', '--nolog', '-A', 'pbalign_0.3.0-1.dsc'] Initiating build PACKAGEBUILD-11866796 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-14.buildd +==============================================================================+ | pbalign 0.3.0-1 (amd64) 16 Jan 2017 05:11 | +==============================================================================+ Package: pbalign Version: 0.3.0-1 Source Version: 0.3.0-1 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/pbalign-69jNQV/pbalign-0.3.0' with '<>' I: NOTICE: Log filtering will replace 'build/pbalign-69jNQV' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11866796/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pbalign_0.3.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-z7DkIP/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-z7DkIP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-z7DkIP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-z7DkIP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-z7DkIP/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-z7DkIP/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (145 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-z7DkIP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 9), dh-python, python-all, python-setuptools, python-pbcore (>= 0.8.5), python-pbcommand (>= 0.2.0), python-sphinx, help2man Filtered Build-Depends: debhelper (>= 9), dh-python, python-all, python-setuptools, python-pbcore (>= 0.8.5), python-pbcommand (>= 0.2.0), python-sphinx, help2man dpkg-deb: building package 'sbuild-build-depends-pbalign-dummy' in '/<>/resolver-zqKCXb/apt_archive/sbuild-build-depends-pbalign-dummy.deb'. Ign:1 copy:/<>/resolver-zqKCXb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zqKCXb/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-zqKCXb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zqKCXb/apt_archive ./ Sources [265 B] Get:5 copy:/<>/resolver-zqKCXb/apt_archive ./ Packages [583 B] Fetched 2967 B in 0s (211 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install pbalign build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas-common libblas3 libbsd0 libcroco3 libexpat1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhdf5-100 libhts1 libicu57 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-avro python-babel python-babel-localedata python-chardet python-docutils python-h5py python-imagesize python-iso8601 python-jinja2 python-markupsafe python-minimal python-numpy python-pbcommand python-pbcore python-pkg-resources python-pygments python-pysam python-requests python-roman python-setuptools python-six python-sphinx python-tz python-urllib3 python2.7 python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal sgml-base sphinx-common xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc gfortran python-dev python-nose python-numpy-dbg python-numpy-doc python-pbcore-doc ttf-bitstream-vera python-cryptography python-idna python-openssl python-socks python-setuptools-doc python-sphinx-rtd-theme libjs-mathjax dvipng texlive-latex-extra texlive-fonts-recommended texlive-generic-extra sphinx-doc python-ntlm python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.5-venv python3.5-doc sgml-base-doc Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-cryptography python-idna python-ipaddress python-openssl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common file gettext gettext-base groff-base help2man intltool-debian libaec0 libarchive-zip-perl libblas-common libblas3 libbsd0 libcroco3 libexpat1 libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libhdf5-100 libhts1 libicu57 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libsz2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python python-alabaster python-all python-avro python-babel python-babel-localedata python-chardet python-docutils python-h5py python-imagesize python-iso8601 python-jinja2 python-markupsafe python-minimal python-numpy python-pbcommand python-pbcore python-pkg-resources python-pygments python-pysam python-requests python-roman python-setuptools python-six python-sphinx python-tz python-urllib3 python2.7 python2.7-minimal python3 python3-minimal python3.5 python3.5-minimal sbuild-build-depends-pbalign-dummy sgml-base sphinx-common xml-core 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 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Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.51.0-2) ... No schema files found: doing nothing. Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libicu57:amd64 (57.1-5) ... Setting up libbsd0:amd64 (0.8.3-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:amd64 (1:5.29-2) ... Setting up libcroco3:amd64 (0.6.11-2) ... Setting up libblas3 (3.7.0-1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up python-babel-localedata (2.3.4+dfsg.1-2) ... Setting up sphinx-common (1.4.9-2) ... Setting up liblocale-gettext-perl (1.07-3build1) ... Setting up xml-core (0.17) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:amd64 (2.7.13-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up libfile-stripnondeterminism-perl (0.029-2) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-3) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up liblapack3 (3.7.0-1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:amd64 (3.5.3~rc1-1) ... Setting up python2.7 (2.7.13-1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-2) ... Setting up libpython-stdlib:amd64 (2.7.13-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.13-1) ... Setting up libtool (2.4.6-2) ... Setting up python3.5 (3.5.3~rc1-1) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up po-debconf (1.0.20) ... Setting up python-pysam (0.9.1.4+ds-1) ... Setting up python-tz (2014.10~dfsg1-0ubuntu2) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-avro (1.8.1+dfsg-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (32.3.1-1) ... Setting up python-roman (2.0.0-2) ... Setting up python-markupsafe (0.23-3) ... Setting up python-numpy (1:1.12.0~rc2-1ubuntu1) ... Setting up python-six (1.10.0-3) ... Setting up python-pygments (2.1.3+dfsg-1) ... Setting up python-iso8601 (0.1.11-1) ... Setting up python-all (2.7.13-1) ... Setting up python-setuptools (32.3.1-1) ... Setting up python-urllib3 (1.19.1-1) ... Setting up python-h5py (2.6.0-2ubuntu1) ... Setting up python-chardet (2.3.0-2) ... Setting up python-jinja2 (2.9.4-1) ... Setting up python-babel (2.3.4+dfsg.1-2) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-pbcore (1.2.10+dfsg-1) ... Setting up python-requests (2.12.4-1) ... Setting up python-pbcommand (0.5.3-1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-1) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.4.9-2) ... Setting up dh-python (2.20160818) ... Setting up dh-autoreconf (13) ... Setting up python3 (3.5.1-4) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up sbuild-build-depends-pbalign-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.029-2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-59-generic amd64 (x86_64) Toolchain package versions: binutils_2.27.90.20170114-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.3.0-2ubuntu1 gcc-6_6.3.0-2ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 linux-libc-dev_4.9.0-12.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4~beta3ubuntu1 apt-transport-https_1.4~beta3ubuntu1 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.90.20170114-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.3.0-2ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_13 dh-python_2.20160818 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu1 docutils-common_0.13.1+dfsg-1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 g++_4:6.2.1-1ubuntu1 g++-6_6.3.0-2ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.3.0-2ubuntu1 gcc-6-base_6.3.0-2ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 help2man_1.47.4 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libaec0_0.3.2-1 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta3ubuntu1 libarchive-zip-perl_1.59-1 libasan3_6.3.0-2ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.3.0-2ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblas-common_3.7.0-1 libblas3_3.7.0-1 libblkid1_2.29-1ubuntu2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-2ubuntu1 libcilkrts5_6.3.0-2ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libexpat1_2.2.0-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libgcc-6-dev_6.3.0-2ubuntu1 libgcc1_1:6.3.0-2ubuntu1 libgcrypt20_1.7.5-3 libgdbm3_1.8.3-14 libgfortran3_6.3.0-2ubuntu1 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.3.0-2ubuntu1 libgpg-error0_1.26-1 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhdf5-100_1.10.0-patch1+docs-3 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhts1_1.3.2-1ubuntu1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_6.3.0-2ubuntu1 libjs-jquery_3.1.1-2 libjs-sphinxdoc_1.4.9-2 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 liblapack3_3.7.0-1 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblocale-gettext-perl_1.07-3build1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.3.0-2ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx2_6.3.0-2ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng16-16_1.6.28-1 libprocps6_2:3.3.12-1ubuntu2 libpython-stdlib_2.7.13-1 libpython2.7-minimal_2.7.13-1 libpython2.7-stdlib_2.7.13-1 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.3~rc1-1 libpython3.5-stdlib_3.5.3~rc1-1 libquadmath0_6.3.0-2ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-1 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.3.0-2ubuntu1 libstdc++6_6.3.0-2ubuntu1 libsystemd0_232-10ubuntu1 libsz2_0.3.2-1 libtasn1-6_4.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_6.3.0-2ubuntu1 libubsan0_6.3.0-2ubuntu1 libudev1_232-10ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-12.13 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_1.0.0-1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-1 python-alabaster_0.7.8-1 python-all_2.7.13-1 python-avro_1.8.1+dfsg-1 python-babel_2.3.4+dfsg.1-2 python-babel-localedata_2.3.4+dfsg.1-2 python-chardet_2.3.0-2 python-docutils_0.13.1+dfsg-1 python-h5py_2.6.0-2ubuntu1 python-imagesize_0.7.1-1 python-iso8601_0.1.11-1 python-jinja2_2.9.4-1 python-markupsafe_0.23-3 python-minimal_2.7.13-1 python-numpy_1:1.12.0~rc2-1ubuntu1 python-pbcommand_0.5.3-1 python-pbcore_1.2.10+dfsg-1 python-pkg-resources_32.3.1-1 python-pygments_2.1.3+dfsg-1 python-pysam_0.9.1.4+ds-1 python-requests_2.12.4-1 python-roman_2.0.0-2 python-setuptools_32.3.1-1 python-six_1.10.0-3 python-sphinx_1.4.9-2 python-tz_2014.10~dfsg1-0ubuntu2 python-urllib3_1.19.1-1 python2.7_2.7.13-1 python2.7-minimal_2.7.13-1 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.3~rc1-1 python3.5-minimal_3.5.3~rc1-1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbalign-dummy_0.invalid.0 sed_4.3-3 sensible-utils_0.0.9 sgml-base_1.29 sphinx-common_1.4.9-2 systemd_232-10ubuntu1 systemd-sysv_232-10ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xml-core_0.17 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jan 15 23:50:59 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pbalign_0.3.0-1.dsc dpkg-source: info: extracting pbalign in pbalign-0.3.0 dpkg-source: info: unpacking pbalign_0.3.0.orig.tar.gz dpkg-source: info: unpacking pbalign_0.3.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pbalign dpkg-buildpackage: info: source version 0.3.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build pbalign-0.3.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with=python2 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py clean /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running clean removing '/<>/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it dh_clean -O--buildsystem=pybuild debian/rules build dh build --with=python2 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py config /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build I: pybuild base:184: /usr/bin/python setup.py build /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running build running build_py creating /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/service.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/bampostservice.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/filterservice.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/pbalignfiles.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/pbalignrunner.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/options.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign copying pbalign/ccs.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign creating /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools copying pbalign/tools/mask_aligned_reads.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools copying pbalign/tools/extractUnmappedSubreads.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools copying pbalign/tools/loadChemistry.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools copying pbalign/tools/createChemistryHeader.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools copying pbalign/tools/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools creating /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/gmap.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/align.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/fastabasedalign.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/bowtie.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice copying pbalign/alignservice/blasr.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice creating /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils copying pbalign/utils/RgnH5IO.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils copying pbalign/utils/progutil.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils copying pbalign/utils/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils copying pbalign/utils/tempfileutil.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils copying pbalign/utils/fileutil.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils creating /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tasks copying pbalign/tasks/consolidate_alignments.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tasks copying pbalign/tasks/__init__.py -> /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tasks /usr/bin/make doc make[2]: Entering directory '/<>' sphinx-apidoc -T -f -o doc pbalign/ && cd doc && make html Creating file doc/pbalign.rst. Creating file doc/pbalign.alignservice.rst. Creating file doc/pbalign.tasks.rst. Creating file doc/pbalign.tools.rst. Creating file doc/pbalign.utils.rst. make[3]: Entering directory '/<>/doc' sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.4.9 making output directory... loading pickled environment... not yet created loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... [ 14%] howto reading sources... [ 28%] index reading sources... [ 42%] pbalign reading sources... [ 57%] pbalign.alignservice reading sources... [ 71%] pbalign.tasks reading sources... [ 85%] pbalign.tools reading sources... [100%] pbalign.utils /<>/doc/pbalign.rst:20: WARNING: autodoc: failed to import module u'pbalign.bampostservice'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.bampostservice /<>/doc/pbalign.rst:28: WARNING: autodoc: failed to import module u'pbalign.ccs'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.ccs /<>/doc/pbalign.rst:36: WARNING: autodoc: failed to import module u'pbalign.filterservice'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.filterservice /<>/doc/pbalign.rst:44: WARNING: autodoc: failed to import module u'pbalign.options'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.options /<>/doc/pbalign.rst:52: WARNING: autodoc: failed to import module u'pbalign.pbalignfiles'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.pbalignfiles /<>/doc/pbalign.rst:60: WARNING: autodoc: failed to import module u'pbalign.pbalignrunner'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.pbalignrunner /<>/doc/pbalign.rst:68: WARNING: autodoc: failed to import module u'pbalign.service'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.service /<>/doc/pbalign.rst:77: WARNING: autodoc: failed to import module u'pbalign'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign /<>/doc/pbalign.alignservice.rst:10: WARNING: autodoc: failed to import module u'pbalign.alignservice.align'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice.align /<>/doc/pbalign.alignservice.rst:18: WARNING: autodoc: failed to import module u'pbalign.alignservice.blasr'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice.blasr /<>/doc/pbalign.alignservice.rst:26: WARNING: autodoc: failed to import module u'pbalign.alignservice.bowtie'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice.bowtie /<>/doc/pbalign.alignservice.rst:34: WARNING: autodoc: failed to import module u'pbalign.alignservice.fastabasedalign'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice.fastabasedalign /<>/doc/pbalign.alignservice.rst:42: WARNING: autodoc: failed to import module u'pbalign.alignservice.gmap'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice.gmap /<>/doc/pbalign.alignservice.rst:51: WARNING: autodoc: failed to import module u'pbalign.alignservice'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.alignservice /<>/doc/pbalign.tasks.rst:10: WARNING: autodoc: failed to import module u'pbalign.tasks.consolidate_alignments'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tasks.consolidate_alignments /<>/doc/pbalign.tasks.rst:19: WARNING: autodoc: failed to import module u'pbalign.tasks'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tasks /<>/doc/pbalign.tools.rst:10: WARNING: autodoc: failed to import module u'pbalign.tools.createChemistryHeader'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tools.createChemistryHeader /<>/doc/pbalign.tools.rst:18: WARNING: autodoc: failed to import module u'pbalign.tools.extractUnmappedSubreads'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tools.extractUnmappedSubreads /<>/doc/pbalign.tools.rst:26: WARNING: autodoc: failed to import module u'pbalign.tools.loadChemistry'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tools.loadChemistry /<>/doc/pbalign.tools.rst:34: WARNING: autodoc: failed to import module u'pbalign.tools.mask_aligned_reads'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tools.mask_aligned_reads /<>/doc/pbalign.tools.rst:43: WARNING: autodoc: failed to import module u'pbalign.tools'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.tools /<>/doc/pbalign.utils.rst:10: WARNING: autodoc: failed to import module u'pbalign.utils.RgnH5IO'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.utils.RgnH5IO /<>/doc/pbalign.utils.rst:18: WARNING: autodoc: failed to import module u'pbalign.utils.fileutil'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.utils.fileutil /<>/doc/pbalign.utils.rst:26: WARNING: autodoc: failed to import module u'pbalign.utils.progutil'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.utils.progutil /<>/doc/pbalign.utils.rst:34: WARNING: autodoc: failed to import module u'pbalign.utils.tempfileutil'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.utils.tempfileutil /<>/doc/pbalign.utils.rst:43: WARNING: autodoc: failed to import module u'pbalign.utils'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 529, in import_object __import__(self.modname) ImportError: No module named pbalign.utils looking for now-outdated files... none found pickling environment... done checking consistency... /<>/doc/pbalign.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 14%] howto writing output... [ 28%] index writing output... [ 42%] pbalign writing output... [ 57%] pbalign.alignservice writing output... [ 71%] pbalign.tasks writing output... [ 85%] pbalign.tools writing output... [100%] pbalign.utils generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry u'/<>/doc/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 29 warnings. Build finished. The HTML pages are in _build/html. make[3]: Leaving directory '/<>/doc' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild I: pybuild base:184: cd /<>/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK fakeroot debian/rules binary dh binary --with=python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python setup.py install --root /<>/debian/python-pbalign /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running install running build running build_py running install_lib creating /<>/debian/python-pbalign/usr creating /<>/debian/python-pbalign/usr/lib creating /<>/debian/python-pbalign/usr/lib/python2.7 creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/service.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools/mask_aligned_reads.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools/extractUnmappedSubreads.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools/loadChemistry.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools/createChemistryHeader.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tools/__init__.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/gmap.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/align.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/fastabasedalign.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/bowtie.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/__init__.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/alignservice/blasr.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/bampostservice.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils/RgnH5IO.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils/progutil.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils/__init__.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils/tempfileutil.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/utils/fileutil.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils creating /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tasks/consolidate_alignments.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/tasks/__init__.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/filterservice.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/__init__.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/pbalignfiles.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/pbalignrunner.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/options.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign copying /<>/.pybuild/pythonX.Y_2.7/build/pbalign/ccs.py -> /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/service.py to service.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/mask_aligned_reads.py to mask_aligned_reads.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py to extractUnmappedSubreads.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/loadChemistry.py to loadChemistry.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/createChemistryHeader.py to createChemistryHeader.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/gmap.py to gmap.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py to align.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py to fastabasedalign.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py to bowtie.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/alignservice/blasr.py to blasr.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/bampostservice.py to bampostservice.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/RgnH5IO.py to RgnH5IO.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/progutil.py to progutil.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py to tempfileutil.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/utils/fileutil.py to fileutil.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks/consolidate_alignments.py to consolidate_alignments.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/tasks/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/filterservice.py to filterservice.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/__init__.py to __init__.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py to pbalignfiles.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/pbalignrunner.py to pbalignrunner.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/options.py to options.pyc byte-compiling /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign/ccs.py to ccs.pyc running install_egg_info running egg_info creating pbalign.egg-info writing requirements to pbalign.egg-info/requires.txt writing pbalign.egg-info/PKG-INFO writing top-level names to pbalign.egg-info/top_level.txt writing dependency_links to pbalign.egg-info/dependency_links.txt writing entry points to pbalign.egg-info/entry_points.txt writing manifest file 'pbalign.egg-info/SOURCES.txt' reading manifest file 'pbalign.egg-info/SOURCES.txt' writing manifest file 'pbalign.egg-info/SOURCES.txt' Copying pbalign.egg-info to /<>/debian/python-pbalign/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info Skipping SOURCES.txt running install_scripts Installing pbalign script to /<>/debian/python-pbalign/usr/bin Installing extractUnmappedSubreads.py script to /<>/debian/python-pbalign/usr/bin Installing createChemistryHeader.py script to /<>/debian/python-pbalign/usr/bin Installing loadChemistry.py script to /<>/debian/python-pbalign/usr/bin Installing maskAlignedReads.py script to /<>/debian/python-pbalign/usr/bin debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Create manpages mkdir -p /<>/debian/pbalign/usr/share/man/man1 declare -A description; \ description=( \ [pbalign]="Mapping PacBio sequences to references" \ [maskAlignedReads.py]="Mask aligned reads in regions file" \ [createChemistryHeader.py]="Create a SAM header with PacBio sequencing chemistry information" \ [loadChemistry.py]="Load PacBio sequencing chemistry information" \ [extractUnmappedSubreads.py]="Extract unmapped subreads from a fasta file" \ ); \ export PYTHONPATH=/<>/debian/python-pbalign/usr/lib/python2.7/dist-packages; \ for executable in /<>/debian/python-pbalign/usr/bin/*; \ do \ help2man --no-info --version-string 0.3.0 --name="${description[`basename $executable`]}" \ $executable > /<>/debian/pbalign/usr/share/man/man1/`basename $executable.1`; \ done help2man: can't get `--help' info from /<>/debian/python-pbalign/usr/bin/maskAlignedReads.py Try `--no-discard-stderr' if option outputs to stderr # Remove .py suffix from scripts (we'll make symlinks to replace them) for script in extractUnmappedSubreads \ loadChemistry \ createChemistryHeader \ maskAlignedReads; \ do \ mv /<>/debian/python-pbalign/usr/bin/$script.py /<>/debian/python-pbalign/usr/bin/$script; \ mv /<>/debian/pbalign/usr/share/man/man1/$script.py.1 /<>/debian/pbalign/usr/share/man/man1/$script.1; \ done # Place executables in the pbalign package mkdir -p /<>/debian/pbalign/usr/bin mv /<>/debian/python-pbalign/usr/bin/* /<>/debian/pbalign/usr/bin make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package python-pbalign: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-pbalign: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: dh_gencontrol debug symbol wrapper: packages to act on: dh_gencontrol debug symbol wrapper: ignored packages: dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing pbalign (in debian/pbalign); do_strip: , oemstrip: pkgstriptranslations: processing pbalign-doc (in debian/pbalign-doc); do_strip: , oemstrip: pkgstriptranslations: processing python-pbalign (in debian/python-pbalign); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/pbalign/DEBIAN/control, package pbalign, directory debian/pbalign pkgstripfiles: processing control file: debian/python-pbalign/DEBIAN/control, package python-pbalign, directory debian/python-pbalign Searching for duplicated docs in dependency python-pbalign... pkgstripfiles: processing control file: debian/pbalign-doc/DEBIAN/control, package pbalign-doc, directory debian/pbalign-doc INFO: pkgstripfiles: waiting for lock (python-pbalign) ... INFO: pkgstripfiles: waiting for lock (pbalign-doc) ... symlinking changelog.Debian.gz in pbalign to file in python-pbalign pkgstripfiles: Running PNG optimization (using 4 cpus) for package pbalign ... pkgstripfiles: No PNG files. dpkg-deb: building package 'pbalign' in '../pbalign_0.3.0-1_all.deb'. INFO: pkgstripfiles: waiting for lock (pbalign-doc) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-pbalign ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-pbalign' in '../python-pbalign_0.3.0-1_all.deb'. pkgstripfiles: Disabled PNG optimization for -doc package pbalign-doc (to save build time) dpkg-deb: building package 'pbalign-doc' in '../pbalign-doc_0.3.0-1_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../pbalign_0.3.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build pbalign-0.3.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170116-0512 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pbalign_0.3.0-1_amd64.changes: ------------------------------ Format: 1.8 Date: Sun, 15 Jan 2017 15:49:13 -0800 Source: pbalign Binary: pbalign python-pbalign pbalign-doc Architecture: all Version: 0.3.0-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: pbalign - map Pacific Biosciences reads to reference DNA sequences pbalign-doc - documentation for pbalign python-pbalign - map Pacific Biosciences reads to reference DNA sequences (Python2 Changes: pbalign (0.3.0-1) unstable; urgency=medium . * New upstream release (corresponds to smrtanalysis-4.0.0 tag) * Readability improvements and clean-ups in d/control and d/rules * Update email address and copyright year * Bump Standards-Version to 3.9.8 * Use encrypted protocols for VCS URLs * Add build-dependency on pbcommand * Drop patch applied upstream * Don't install LICENSES file * Set blasr minimum version Checksums-Sha1: faaa5cd5aabd4a2285afc699322c5d4a1a7a357f 42644 pbalign-doc_0.3.0-1_all.deb d34ae37a5440d0238aec47c2bf868b5cf24358cb 7038 pbalign_0.3.0-1_all.deb d91a3348bdbc2ac17faea229ae3b7e40ce27fadb 37196 python-pbalign_0.3.0-1_all.deb Checksums-Sha256: e5b9720717a618c4a817e25606e56aaf6aab4a4e22f9f6adda85508540c2d550 42644 pbalign-doc_0.3.0-1_all.deb ea635749ab18befbbea2d1bd282678e095137fd227a3fdc1a9b78ebef475bbdb 7038 pbalign_0.3.0-1_all.deb 8358110248860567b017c6d519222aec26b7bfb94b2f3d74e3941db22851bb6e 37196 python-pbalign_0.3.0-1_all.deb Files: 4365f7f453b8ee6587a53b7fc5db5ff1 42644 doc optional pbalign-doc_0.3.0-1_all.deb e72b3a52ea71769f6fe5e63f06651919 7038 python optional pbalign_0.3.0-1_all.deb 34b60a8c7719268fd0ff205968ffb89e 37196 python optional python-pbalign_0.3.0-1_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pbalign-doc_0.3.0-1_all.deb --------------------------- new debian package, version 2.0. size 42644 bytes: control archive=1819 bytes. 732 bytes, 19 lines control 3277 bytes, 41 lines md5sums Package: pbalign-doc Source: pbalign Version: 0.3.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 237 Depends: libjs-jquery, libjs-underscore Section: doc Priority: optional Homepage: https://github.com/PacificBiosciences/pbalign Description: documentation for pbalign pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. . pbalign is part of the SMRTAnalysis suite. This package contains its documentation drwxr-xr-x root/root 0 2017-01-15 23:49 ./ drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/ drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/ drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc-base/ -rw-r--r-- root/root 225 2015-09-07 21:43 ./usr/share/doc-base/pbalign drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/pbalign-doc/ -rw-r--r-- root/root 432 2017-01-15 23:49 ./usr/share/doc/pbalign-doc/changelog.Debian.gz -rw-r--r-- root/root 2011 2016-12-24 01:26 ./usr/share/doc/pbalign-doc/copyright drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/pbalign/ drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/pbalign/html/ -rw-r--r-- root/root 230 2017-01-15 23:49 ./usr/share/doc/pbalign/html/.buildinfo drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/ -rw-r--r-- root/root 13299 2016-12-22 02:11 ./usr/share/doc/pbalign/html/_sources/howto.txt -rw-r--r-- root/root 289 2016-12-22 02:11 ./usr/share/doc/pbalign/html/_sources/index.txt -rw-r--r-- root/root 1090 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/pbalign.alignservice.txt -rw-r--r-- root/root 389 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/pbalign.tasks.txt -rw-r--r-- root/root 950 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/pbalign.tools.txt -rw-r--r-- root/root 1309 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/pbalign.txt -rw-r--r-- root/root 830 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_sources/pbalign.utils.txt drwxr-xr-x root/root 0 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_static/ -rw-r--r-- root/root 673 2016-11-23 13:34 ./usr/share/doc/pbalign/html/_static/ajax-loader.gif -rw-r--r-- root/root 9740 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_static/basic.css -rw-r--r-- root/root 4146 2017-01-15 23:49 ./usr/share/doc/pbalign/html/_static/classic.css -rw-r--r-- root/root 3500 2017-01-15 23:49 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-rw-r--r-- root/root 314 2017-01-15 23:49 ./usr/share/doc/pbalign/html/objects.inv -rw-r--r-- root/root 5760 2017-01-15 23:49 ./usr/share/doc/pbalign/html/pbalign.alignservice.html -rw-r--r-- root/root 10018 2017-01-15 23:49 ./usr/share/doc/pbalign/html/pbalign.html -rw-r--r-- root/root 4378 2017-01-15 23:49 ./usr/share/doc/pbalign/html/pbalign.tasks.html -rw-r--r-- root/root 5468 2017-01-15 23:49 ./usr/share/doc/pbalign/html/pbalign.tools.html -rw-r--r-- root/root 5268 2017-01-15 23:49 ./usr/share/doc/pbalign/html/pbalign.utils.html -rw-r--r-- root/root 3525 2017-01-15 23:49 ./usr/share/doc/pbalign/html/search.html -rw-r--r-- root/root 3905 2017-01-15 23:49 ./usr/share/doc/pbalign/html/searchindex.js pbalign_0.3.0-1_all.deb ----------------------- new debian package, version 2.0. size 7038 bytes: control archive=1057 bytes. 823 bytes, 19 lines control 802 bytes, 12 lines md5sums Package: pbalign Version: 0.3.0-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: python:any, python-pbalign, python-pkg-resources, blasr (>= 5.3+0) Recommends: python-pbh5tools, hdf5-tools Suggests: bowtie2, gmap, pbalign-doc Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/pbalign Description: map Pacific Biosciences reads to reference DNA sequences pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. . 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Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 2900 Build-Time: 20 Distribution: zesty-proposed Host Architecture: amd64 Install-Time: 40 Job: pbalign_0.3.0-1.dsc Machine Architecture: amd64 Package: pbalign Package-Time: 61 Source-Version: 0.3.0-1 Space: 2900 Status: successful Version: 0.3.0-1 -------------------------------------------------------------------------------- Finished at 20170116-0512 Build needed 00:01:01, 2900k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11866796'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11866796/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11866796'] Unmounting chroot for build PACKAGEBUILD-11866796... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11866796'] Removing build PACKAGEBUILD-11866796