RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-013 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:35:59 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_141 python-lpbuildd_141 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 22 Jan 17:11:20 ntpdate[1905]: adjust time server 10.211.37.1 offset -0.000189 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11901340', '/home/buildd/filecache-default/13c837fa8f013503c65d7b6fd85343da86753929'] Unpacking chroot for build PACKAGEBUILD-11901340 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11901340'] Mounting chroot for build PACKAGEBUILD-11901340 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11901340', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11901340 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11901340', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-11901340 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main ppc64el Packages [1175 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [589 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe ppc64el Packages [7809 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4680 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el Packages [120 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [62.4 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe ppc64el Packages [371 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [180 kB] Fetched 15.5 MB in 8s (1843 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libisl15 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libp11-kit0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym sed systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 105 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 53.2 MB of archives. After this operation, 43.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main ppc64el base-files ppc64el 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main ppc64el debianutils ppc64el 4.8.1 [86.0 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main ppc64el bash ppc64el 4.4-2ubuntu1 [644 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main ppc64el bsdutils ppc64el 1:2.29-1ubuntu2 [54.9 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main ppc64el diffutils ppc64el 1:3.5-3 [171 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main ppc64el findutils ppc64el 4.6.0+git+20161106-1 [289 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main ppc64el grep ppc64el 2.27-1 [145 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libc6-dev ppc64el 2.24-7ubuntu2 [2237 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libc-dev-bin ppc64el 2.24-7ubuntu2 [64.3 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main ppc64el linux-libc-dev ppc64el 4.9.0-12.13 [860 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libitm1 ppc64el 6.3.0-4ubuntu1 [28.2 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el gcc-6-base ppc64el 6.3.0-4ubuntu1 [17.3 kB] Get:13 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgcc1 ppc64el 1:6.3.0-4ubuntu1 [27.3 kB] Get:14 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libcc1-0 ppc64el 6.3.0-4ubuntu1 [30.6 kB] Get:15 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el binutils ppc64el 2.27.90.20170118-1ubuntu1 [2328 kB] Get:16 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgomp1 ppc64el 6.3.0-4ubuntu1 [66.9 kB] Get:17 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libatomic1 ppc64el 6.3.0-4ubuntu1 [8236 B] Get:18 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libasan3 ppc64el 6.3.0-4ubuntu1 [280 kB] Get:19 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libubsan0 ppc64el 6.3.0-4ubuntu1 [104 kB] Get:20 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el g++-6 ppc64el 6.3.0-4ubuntu1 [6434 kB] Get:21 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libstdc++-6-dev ppc64el 6.3.0-4ubuntu1 [1456 kB] Get:22 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgcc-6-dev ppc64el 6.3.0-4ubuntu1 [659 kB] Get:23 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el gcc-6 ppc64el 6.3.0-4ubuntu1 [6207 kB] Get:24 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el cpp-6 ppc64el 6.3.0-4ubuntu1 [5675 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libstdc++6 ppc64el 6.3.0-4ubuntu1 [418 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el zlib1g ppc64el 1:1.2.8.dfsg-4ubuntu1 [51.1 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-1 [225 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main ppc64el libisl15 ppc64el 0.18-1 [533 kB] Get:29 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libc6 ppc64el 2.24-7ubuntu2 [2444 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main ppc64el libuuid1 ppc64el 2.29-1ubuntu2 [15.1 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main ppc64el libblkid1 ppc64el 2.29-1ubuntu2 [102 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main ppc64el libfdisk1 ppc64el 2.29-1ubuntu2 [132 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main ppc64el libselinux1 ppc64el 2.6-3 [67.3 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main ppc64el util-linux ppc64el 2.29-1ubuntu2 [881 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main ppc64el mount ppc64el 2.29-1ubuntu2 [126 kB] Get:36 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el perl-modules-5.24 all 5.24.1-1 [2662 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libperl5.24 ppc64el 5.24.1-1 [3282 kB] Get:38 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el perl ppc64el 5.24.1-1 [219 kB] Get:39 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el perl-base ppc64el 5.24.1-1 [1227 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main ppc64el sed ppc64el 4.3-3 [188 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main ppc64el tar ppc64el 1.29b-1.1 [241 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main ppc64el base-passwd ppc64el 3.5.43 [49.3 kB] Get:43 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el init-system-helpers all 1.47 [37.8 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libc-bin ppc64el 2.24-7ubuntu2 [582 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main ppc64el liblzma5 ppc64el 5.2.2-1.2 [101 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main ppc64el libapt-pkg5.0 ppc64el 1.4~beta4 [822 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main ppc64el adduser all 3.113+nmu3ubuntu5 [161 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main ppc64el ubuntu-keyring all 2016.10.27 [16.6 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main ppc64el apt ppc64el 1.4~beta4 [1108 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main ppc64el libapparmor1 ppc64el 2.10.95-4ubuntu5.2 [30.0 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgpg-error0 ppc64el 1.26-2 [36.7 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgcrypt20 ppc64el 1.7.5-3 [418 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main ppc64el libmount1 ppc64el 2.29-1ubuntu2 [107 kB] Get:54 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu1 [43.6 kB] Get:55 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el systemd ppc64el 232-10ubuntu1 [2164 kB] Get:56 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libsystemd0 ppc64el 232-10ubuntu1 [204 kB] Get:57 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el init ppc64el 1.47 [5834 B] Get:58 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el systemd-sysv ppc64el 232-10ubuntu1 [13.9 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsepol1 ppc64el 2.6-2 [205 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main ppc64el libustr-1.0-1 ppc64el 1.0.4-6 [55.2 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsemanage-common all 2.6-2 [6794 B] Get:62 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsemanage1 ppc64el 2.6-2 [75.5 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsmartcols1 ppc64el 2.29-1ubuntu2 [64.2 kB] Get:64 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libudev1 ppc64el 232-10ubuntu1 [54.5 kB] Get:65 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el multiarch-support ppc64el 2.24-7ubuntu2 [6818 B] Get:66 http://ftpmaster.internal/ubuntu zesty/main ppc64el tzdata all 2016j-2 [204 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.136-1ubuntu1 [128 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main ppc64el dmsetup ppc64el 2:1.02.136-1ubuntu1 [69.8 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main ppc64el libroken18-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [39.0 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main ppc64el libasn1-8-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [137 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main ppc64el libassuan0 ppc64el 2.4.3-2 [31.5 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main ppc64el libhogweed4 ppc64el 3.3-1 [133 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main ppc64el libnettle6 ppc64el 3.3-1 [121 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main ppc64el libp11-kit0 ppc64el 0.23.3-4 [105 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main ppc64el libtasn1-6 ppc64el 4.10-1 [35.6 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main ppc64el libgnutls30 ppc64el 3.5.6-4ubuntu2 [527 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main ppc64el libheimbase1-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [28.7 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main ppc64el libhcrypto4-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [95.1 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main ppc64el libwind0-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [47.8 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main ppc64el libhx509-5-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [101 kB] Get:81 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libsqlite3-0 ppc64el 3.16.2-1 [439 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main ppc64el libkrb5-26-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [189 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main ppc64el libheimntlm0-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [15.6 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main ppc64el libgssapi3-heimdal ppc64el 1.7~git20160703+dfsg-1ubuntu1 [86.1 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main ppc64el libksba8 ppc64el 1.3.5-2 [90.7 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsasl2-modules-db ppc64el 2.1.27~72-g88d82a3+dfsg-1 [14.7 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main ppc64el libsasl2-2 ppc64el 2.1.27~72-g88d82a3+dfsg-1 [47.6 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main ppc64el libldap-2.4-2 ppc64el 2.4.42+dfsg-2ubuntu5 [151 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main ppc64el libnpth0 ppc64el 1.3-1 [8046 B] Get:90 http://ftpmaster.internal/ubuntu zesty/main ppc64el libslang2 ppc64el 2.3.1-5ubuntu1 [383 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main ppc64el libssl1.0.0 ppc64el 1.0.2g-1ubuntu10 [824 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main ppc64el pinentry-curses ppc64el 1.0.0-1 [31.9 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main ppc64el xz-utils ppc64el 5.2.2-1.2 [82.5 kB] Get:94 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.15-1 [109 kB] Get:95 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libkrb5-3 ppc64el 1.15-1 [268 kB] Get:96 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libkrb5support0 ppc64el 1.15-1 [31.0 kB] Get:97 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el libk5crypto3 ppc64el 1.15-1 [99.8 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main ppc64el libcurl3-gnutls ppc64el 7.51.0-1ubuntu1 [179 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main ppc64el apt-transport-https ppc64el 1.4~beta4 [39.2 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main ppc64el openssl ppc64el 1.0.2g-1ubuntu10 [483 kB] Get:101 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el ca-certificates all 20161130 [193 kB] Get:102 http://ftpmaster.internal/ubuntu zesty/main ppc64el libpng16-16 ppc64el 1.6.28-1 [187 kB] Get:103 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el advancecomp ppc64el 1.23-1 [253 kB] Get:104 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el cpp ppc64el 4:6.3.0-1ubuntu3 [27.6 kB] Get:105 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el gcc ppc64el 4:6.3.0-1ubuntu3 [5182 B] Get:106 http://ftpmaster.internal/ubuntu zesty-proposed/main ppc64el g++ ppc64el 4:6.3.0-1ubuntu3 [1468 B] Get:107 http://ftpmaster.internal/ubuntu zesty/main ppc64el pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.2 MB in 15s (3331 kB/s) (Reading database ... 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Setting up libsystemd0:ppc64el (232-10ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13972 files and directories currently installed.) Preparing to unpack .../archives/init_1.47_ppc64el.deb ... Unpacking init (1.47) over (1.45) ... Setting up libapparmor1:ppc64el (2.10.95-4ubuntu5.2) ... Setting up libseccomp2:ppc64el (2.3.1-2.1ubuntu1) ... Setting up systemd (232-10ubuntu1) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13972 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-10ubuntu1_ppc64el.deb ... 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Unpacking pkg-create-dbgsym (0.73) over (0.72) ... Setting up libnpth0:ppc64el (1.3-1) ... Setting up libgomp1:ppc64el (6.3.0-4ubuntu1) ... Setting up libatomic1:ppc64el (6.3.0-4ubuntu1) ... Setting up perl-modules-5.24 (5.24.1-1) ... Setting up libperl5.24:ppc64el (5.24.1-1) ... Setting up libnettle6:ppc64el (3.3-1) ... Setting up libcc1-0:ppc64el (6.3.0-4ubuntu1) ... Setting up libasan3:ppc64el (6.3.0-4ubuntu1) ... Setting up libssl1.0.0:ppc64el (1.0.2g-1ubuntu10) ... Setting up libpng16-16:ppc64el (1.6.28-1) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 22 17:12:11 UTC 2017. Universal Time is now: Sun Jan 22 17:12:11 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-10ubuntu1) ... Setting up libubsan0:ppc64el (6.3.0-4ubuntu1) ... Setting up libsasl2-modules-db:ppc64el (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:ppc64el (4.9.0-12.13) ... Setting up advancecomp (1.23-1) ... Setting up libsasl2-2:ppc64el (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:ppc64el (1.3.5-2) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:ppc64el (1.15-1) ... Setting up libtasn1-6:ppc64el (4.10-1) ... Setting up perl (5.24.1-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libgmp10:ppc64el (2:6.1.2+dfsg-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libp11-kit0:ppc64el (0.23.3-4) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:ppc64el (3.16.2-1) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.90.20170118-1ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:ppc64el (2.24-7ubuntu2) ... Setting up libslang2:ppc64el (2.3.1-5ubuntu1) ... Setting up libassuan0:ppc64el (2.4.3-2) ... Setting up libitm1:ppc64el (6.3.0-4ubuntu1) ... Setting up libk5crypto3:ppc64el (1.15-1) ... Setting up libgcc-6-dev:ppc64el (6.3.0-4ubuntu1) ... Setting up libstdc++-6-dev:ppc64el (6.3.0-4ubuntu1) ... Setting up libwind0-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.47) ... Setting up libasn1-8-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhogweed4:ppc64el (3.3-1) ... Setting up libisl15:ppc64el (0.18-1) ... Setting up pinentry-curses (1.0.0-1) ... Setting up libkrb5-3:ppc64el (1.15-1) ... Setting up cpp-6 (6.3.0-4ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up cpp (4:6.3.0-1ubuntu3) ... Setting up libgnutls30:ppc64el (3.5.6-4ubuntu2) ... Setting up gcc-6 (6.3.0-4ubuntu1) ... Setting up libgssapi-krb5-2:ppc64el (1.15-1) ... Setting up g++-6 (6.3.0-4ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc (4:6.3.0-1ubuntu3) ... Setting up libldap-2.4-2:ppc64el (2.4.42+dfsg-2ubuntu5) ... Setting up g++ (4:6.3.0-1ubuntu3) ... Setting up libcurl3-gnutls:ppc64el (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta4) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11901340', 'ppc64el', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=zesty-proposed', '--purge=never', '--nolog', 'pbbam_0.7.4+ds-1.dsc'] Initiating build PACKAGEBUILD-11901340 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:35:59 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-013.buildd +==============================================================================+ | pbbam 0.7.4+ds-1 (ppc64el) 22 Jan 2017 17:12 | +==============================================================================+ Package: pbbam Version: 0.7.4+ds-1 Source Version: 0.7.4+ds-1 Distribution: zesty-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/pbbam-y1jSQN/pbbam-0.7.4+ds' with '<>' I: NOTICE: Log filtering will replace 'build/pbbam-y1jSQN' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11901340/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pbbam_0.7.4+ds-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JuccUV/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-JuccUV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JuccUV/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JuccUV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JuccUV/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-JuccUV/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (234 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JuccUV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 10), dh-exec, cmake, python, libboost-dev (>= 1.54), zlib1g-dev, libssl-dev, libhts-dev, python-cram, samtools Filtered Build-Depends: debhelper (>= 10), dh-exec, cmake, python, libboost-dev (>= 1.54), zlib1g-dev, libssl-dev, libhts-dev, python-cram, samtools dpkg-deb: building package 'sbuild-build-depends-pbbam-dummy' in '/<>/resolver-CIHHPq/apt_archive/sbuild-build-depends-pbbam-dummy.deb'. Ign:1 copy:/<>/resolver-CIHHPq/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CIHHPq/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-CIHHPq/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CIHHPq/apt_archive ./ Sources [264 B] Get:5 copy:/<>/resolver-CIHHPq/apt_archive ./ Packages [585 B] Fetched 2968 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install pbbam build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libboost-dev libboost1.62-dev libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libssl-dev libtimedate-perl libtool libunistring0 libuv1 libxml2 m4 man-db mime-support po-debconf python python-cram python-minimal python2.7 python2.7-minimal samtools zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk python2.7-doc binfmt-support Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libssl-doc libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libboost-dev libboost1.62-dev libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libhts-dev libhts1 libicu57 libjsoncpp1 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libssl-dev libtimedate-perl libtool libunistring0 libuv1 libxml2 m4 man-db mime-support po-debconf python python-cram python-minimal python2.7 python2.7-minimal samtools sbuild-build-depends-pbbam-dummy zlib1g-dev 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 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Setting up libicu57:ppc64el (57.1-5) ... Setting up libbsd0:ppc64el (0.8.3-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-2.1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:ppc64el (1:5.29-2) ... Setting up libcroco3:ppc64el (0.6.11-2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:ppc64el (0.9.3-5.2ubuntu1) ... Setting up libboost-dev:ppc64el (1.62.0.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up samtools (1.3.1-3) ... Setting up libpython2.7-stdlib:ppc64el (2.7.13-2) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up liblzo2-2:ppc64el (2.08-1.2) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.029-2) ... Setting up libjsoncpp1:ppc64el (1.7.4-3) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libarchive13:ppc64el (3.2.1-5) ... Setting up libssl-dev:ppc64el (1.0.2g-1ubuntu10) ... Setting up python2.7 (2.7.13-2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.29-2) ... Setting up libpython-stdlib:ppc64el (2.7.13-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.7.2-1) ... Setting up python (2.7.13-1) ... Setting up libtool (2.4.6-2) ... Setting up python-cram (0.7-1) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (13) ... Setting up dh-strip-nondeterminism (0.029-2) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up dh-exec (0.23) ... Setting up sbuild-build-depends-pbbam-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-59-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.27.90.20170118-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.3.0-4ubuntu1 gcc-6_6.3.0-4ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.3.0-4ubuntu1 libstdc++6_6.3.0-4ubuntu1 linux-libc-dev_4.9.0-12.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4~beta4 apt-transport-https_1.4~beta4 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.43 bash_4.4-2ubuntu1 binutils_2.27.90.20170118-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.25-2ubuntu2 cpp_4:6.3.0-1ubuntu3 cpp-6_6.3.0-4ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_13 dh-exec_0.23 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-3 dmsetup_2:1.02.136-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 g++_4:6.3.0-1ubuntu3 g++-6_6.3.0-4ubuntu1 gcc_4:6.3.0-1ubuntu3 gcc-6_6.3.0-4ubuntu1 gcc-6-base_6.3.0-4ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.47 init-system-helpers_1.47 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta4 libarchive-zip-perl_1.59-1 libarchive13_3.2.1-5 libasan3_6.3.0-4ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.3.0-4ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.3.0-4ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3_7.51.0-1ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libexpat1_2.2.0-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libgcc-6-dev_6.3.0-4ubuntu1 libgcc1_1:6.3.0-4ubuntu1 libgcrypt20_1.7.5-3 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.3.0-4ubuntu1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhts-dev_1.3.2-2ubuntu1 libhts1_1.3.2-2ubuntu1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.18-1 libitm1_6.3.0-4ubuntu1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-4 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1-1 libpipeline1_1.4.1-2 libpng16-16_1.6.28-1 libprocps6_2:3.3.12-1ubuntu2 libpython-stdlib_2.7.13-1 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.16.2-1 libss2_1.43.3-1 libssl-dev_1.0.2g-1ubuntu10 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.3.0-4ubuntu1 libstdc++6_6.3.0-4ubuntu1 libsystemd0_232-10ubuntu1 libtasn1-6_4.10-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.3.0-4ubuntu1 libudev1_232-10ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libuv1_1.9.1-3 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_4.9.0-12.13 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1-1 perl-base_5.24.1-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1-1 pinentry-curses_1.0.0-1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.13-1 python-cram_0.7-1 python-minimal_2.7.13-1 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 readline-common_7.0-0ubuntu2 samtools_1.3.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbbam-dummy_0.invalid.0 sed_4.3-3 sensible-utils_0.0.9 systemd_232-10ubuntu1 systemd-sysv_232-10ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 zlib1g-dev_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jan 22 07:51:30 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pbbam_0.7.4+ds-1.dsc dpkg-source: info: extracting pbbam in pbbam-0.7.4+ds dpkg-source: info: unpacking pbbam_0.7.4+ds.orig.tar.gz dpkg-source: info: unpacking pbbam_0.7.4+ds-1.debian.tar.xz dpkg-source: info: applying ssl-md5.patch dpkg-source: info: applying remove-bam2sam.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/pbbam-0.7.4+ds SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/pbbam-0.7.4+ds' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pbbam dpkg-buildpackage: info: source version 0.7.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build pbbam-0.7.4+ds dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/pbbam-0.7.4+ds' dh_auto_clean find -name "*.deb.t" -delete rm -f -r /<>/pbbam-0.7.4+ds/gendata make[1]: Leaving directory '/<>/pbbam-0.7.4+ds' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/pbbam-0.7.4+ds' dh_auto_configure -- \ -DPacBioBAM_build_shared=ON \ -DPacBioBAM_build_tests=OFF \ -DCMAKE_LIBRARY_PATH=powerpc64le-linux-gnu \ -DCMAKE_SKIP_RPATH=ON \ -DHTSLIB_INCLUDE_DIRS=/usr/include \ -DHTSLIB_LIBRARIES="-lssl -lcrypto -lhts" \ -DCMAKE_SHARED_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DPacBioBAM_build_shared=ON -DPacBioBAM_build_tests=OFF -DCMAKE_LIBRARY_PATH=powerpc64le-linux-gnu -DCMAKE_SKIP_RPATH=ON -DHTSLIB_INCLUDE_DIRS=/usr/include "-DHTSLIB_LIBRARIES=-lssl -lcrypto -lhts" "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro" -- The CXX compiler identification is GNU 6.3.0 -- The C compiler identification is GNU 6.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS -- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS - Success -- Performing Test HAS_NO_SIGN_COMPARE -- Performing Test HAS_NO_SIGN_COMPARE - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.62.0 -- Found ZLIB: /usr/lib/powerpc64le-linux-gnu/libz.so (found version "1.2.8") -- Performing Test HAS_NO_UNUSED_PRIVATE_FIELD -- Performing Test HAS_NO_UNUSED_PRIVATE_FIELD - Success -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu make[1]: Leaving directory '/<>/pbbam-0.7.4+ds' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' /usr/bin/cmake -H/<>/pbbam-0.7.4+ds -B/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/CMakeFiles /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make -f src/CMakeFiles/pbbam.dir/build.make src/CMakeFiles/pbbam.dir/depend make[3]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/pbbam-0.7.4+ds /<>/pbbam-0.7.4+ds/src /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src/CMakeFiles/pbbam.dir/DependInfo.cmake --color= Scanning dependencies of target pbbam make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make -f src/CMakeFiles/pbbam.dir/build.make src/CMakeFiles/pbbam.dir/build make[3]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o [ 2%] Building CXX object src/CMakeFiles/pbbam.dir/AssertUtils.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/BaiIndexedBamReader.cpp [ 3%] Building CXX object src/CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/AssertUtils.cpp.o -c /<>/pbbam-0.7.4+ds/src/AssertUtils.cpp cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o -c /<>/pbbam-0.7.4+ds/src/AlignmentPrinter.cpp [ 4%] Building CXX object src/CMakeFiles/pbbam.dir/Accuracy.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Accuracy.cpp.o -c /<>/pbbam-0.7.4+ds/src/Accuracy.cpp [ 5%] Building CXX object src/CMakeFiles/pbbam.dir/BamFile.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamFile.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamFile.cpp [ 6%] Building CXX object src/CMakeFiles/pbbam.dir/BamHeader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamHeader.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamHeader.cpp [ 8%] Building CXX object src/CMakeFiles/pbbam.dir/BamReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamReader.cpp [ 9%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecord.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecord.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamRecord.cpp [ 10%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamRecordBuilder.cpp [ 11%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamRecordImpl.cpp [ 12%] Building CXX object src/CMakeFiles/pbbam.dir/BamRecordTags.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamRecordTags.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamRecordTags.cpp [ 13%] Building CXX object src/CMakeFiles/pbbam.dir/BamTagCodec.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamTagCodec.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamTagCodec.cpp [ 14%] Building CXX object src/CMakeFiles/pbbam.dir/BamWriter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BamWriter.cpp.o -c /<>/pbbam-0.7.4+ds/src/BamWriter.cpp /<>/pbbam-0.7.4+ds/src/BamWriter.cpp: In member function ‘void PacBio::BAM::internal::BamWriterPrivate::Write(const PacBio::BAM::BamRecord&, int64_t*)’: /<>/pbbam-0.7.4+ds/src/BamWriter.cpp:143:21: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(bgzf); ^ /<>/pbbam-0.7.4+ds/src/BamWriter.cpp: In destructor ‘PacBio::BAM::BamWriter::~BamWriter()’: /<>/pbbam-0.7.4+ds/src/BamWriter.cpp:182:41: warning: ignoring return value of ‘int bgzf_flush(BGZF*)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_flush(d_->file_.get()->fp.bgzf); ^ [ 16%] Building CXX object src/CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/BarcodeQuery.cpp [ 17%] Building CXX object src/CMakeFiles/pbbam.dir/ChemistryTable.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ChemistryTable.cpp.o -c /<>/pbbam-0.7.4+ds/src/ChemistryTable.cpp [ 18%] Building CXX object src/CMakeFiles/pbbam.dir/Cigar.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Cigar.cpp.o -c /<>/pbbam-0.7.4+ds/src/Cigar.cpp [ 19%] Building CXX object src/CMakeFiles/pbbam.dir/CigarOperation.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/CigarOperation.cpp.o -c /<>/pbbam-0.7.4+ds/src/CigarOperation.cpp [ 20%] Building CXX object src/CMakeFiles/pbbam.dir/Compare.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Compare.cpp.o -c /<>/pbbam-0.7.4+ds/src/Compare.cpp [ 21%] Building CXX object src/CMakeFiles/pbbam.dir/Config.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Config.cpp.o -c /<>/pbbam-0.7.4+ds/src/Config.cpp [ 22%] Building CXX object src/CMakeFiles/pbbam.dir/DataSet.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSet.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSet.cpp [ 24%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSetBaseTypes.cpp [ 25%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetElement.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetElement.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSetElement.cpp [ 26%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetIO.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetIO.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSetIO.cpp [ 27%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetTypes.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetTypes.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSetTypes.cpp [ 28%] Building CXX object src/CMakeFiles/pbbam.dir/DataSetXsd.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/DataSetXsd.cpp.o -c /<>/pbbam-0.7.4+ds/src/DataSetXsd.cpp [ 29%] Building CXX object src/CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/EntireFileQuery.cpp [ 31%] Building CXX object src/CMakeFiles/pbbam.dir/FastaReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FastaReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/FastaReader.cpp [ 32%] Building CXX object src/CMakeFiles/pbbam.dir/FileProducer.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FileProducer.cpp.o -c /<>/pbbam-0.7.4+ds/src/FileProducer.cpp [ 33%] Building CXX object src/CMakeFiles/pbbam.dir/FileUtils.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FileUtils.cpp.o -c /<>/pbbam-0.7.4+ds/src/FileUtils.cpp [ 34%] Building CXX object src/CMakeFiles/pbbam.dir/FofnReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/FofnReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/FofnReader.cpp [ 35%] Building CXX object src/CMakeFiles/pbbam.dir/Frames.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Frames.cpp.o -c /<>/pbbam-0.7.4+ds/src/Frames.cpp [ 36%] Building CXX object src/CMakeFiles/pbbam.dir/GenomicInterval.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/GenomicInterval.cpp.o -c /<>/pbbam-0.7.4+ds/src/GenomicInterval.cpp [ 37%] Building CXX object src/CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/GenomicIntervalQuery.cpp [ 39%] Building CXX object src/CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/IndexedFastaReader.cpp [ 40%] Building CXX object src/CMakeFiles/pbbam.dir/IRecordWriter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/IRecordWriter.cpp.o -c /<>/pbbam-0.7.4+ds/src/IRecordWriter.cpp [ 41%] Building CXX object src/CMakeFiles/pbbam.dir/MD5.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/MD5.cpp.o -c /<>/pbbam-0.7.4+ds/src/MD5.cpp [ 42%] Building CXX object src/CMakeFiles/pbbam.dir/MemoryUtils.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/MemoryUtils.cpp.o -c /<>/pbbam-0.7.4+ds/src/MemoryUtils.cpp [ 43%] Building CXX object src/CMakeFiles/pbbam.dir/PbiBuilder.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiBuilder.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiBuilder.cpp [ 44%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFile.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFile.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiFile.cpp [ 45%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilter.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiFilter.cpp [ 47%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiFilterQuery.cpp [ 48%] Building CXX object src/CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiFilterTypes.cpp [ 49%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndex.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndex.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiIndex.cpp [ 50%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiIndexedBamReader.cpp [ 51%] Building CXX object src/CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp [ 52%] Building CXX object src/CMakeFiles/pbbam.dir/PbiRawData.cpp.o [ 54%] Building CXX object src/CMakeFiles/pbbam.dir/ProgramInfo.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/PbiRawData.cpp.o -c /<>/pbbam-0.7.4+ds/src/PbiRawData.cpp cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ProgramInfo.cpp.o -c /<>/pbbam-0.7.4+ds/src/ProgramInfo.cpp [ 55%] Building CXX object src/CMakeFiles/pbbam.dir/QNameQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/QNameQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/QNameQuery.cpp [ 56%] Building CXX object src/CMakeFiles/pbbam.dir/QualityValue.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/QualityValue.cpp.o -c /<>/pbbam-0.7.4+ds/src/QualityValue.cpp [ 57%] Building CXX object src/CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/ReadAccuracyQuery.cpp In file included from /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = short int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &data[0], numReads*sizeof(T)); ^~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = signed char]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadHeader(PacBio::BAM::PbiRawData&, BGZF*)’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:237:46: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &version, sizeof(version)); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:238:47: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, §ions, sizeof(sections)); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:239:47: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &numReads, sizeof(numReads)); ^ In file included from /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &data[0], numReads*sizeof(T)); ^~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = unsigned int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = unsigned char]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadReferenceData(PacBio::BAM::PbiRawReferenceData&, BGZF*)’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:293:31: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &numRefs, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:302:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &entry.tId_, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:303:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &entry.beginRow_, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:304:43: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &entry.endRow_, 4); ^ In file included from /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = float]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_read(fp, &data[0], numReads*sizeof(T)); ^~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::LoadBgzfVector(BGZF*, std::vector&, uint32_t) [with T = long int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:121:5: warning: ignoring return value of ‘ssize_t bgzf_read(BGZF*, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = short int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &output[0], data.size()*sizeof(T)); ^~~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = signed char]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteHeader(const PacBio::BAM::PbiRawData&, BGZF*)’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:380:29: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, magic, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:391:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &version, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:392:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &pbi_flags, 2); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:393:34: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &numReads, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:398:33: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, reserved, 18); ^ In file included from /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &output[0], data.size()*sizeof(T)); ^~~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = unsigned int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = unsigned char]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteReferenceData(const PacBio::BAM::PbiRawReferenceData&, BGZF*)’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:434:32: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &numRefs, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:448:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &tId, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:449:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &beginRow, 4); ^ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:450:37: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &endRow, 4); ^ In file included from /<>/pbbam-0.7.4+ds/src/PbiIndexIO.cpp:38:0: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = float]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] bgzf_write(fp, &output[0], data.size()*sizeof(T)); ^~~~~~~~~~ /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h: In static member function ‘static void PacBio::BAM::internal::PbiIndexIO::WriteBgzfVector(BGZF*, const std::vector&) [with T = long int]’: /<>/pbbam-0.7.4+ds/src/PbiIndexIO.h:158:5: warning: ignoring return value of ‘ssize_t bgzf_write(BGZF*, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] [ 58%] Building CXX object src/CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o -c /<>/pbbam-0.7.4+ds/src/ReadGroupInfo.cpp [ 59%] Building CXX object src/CMakeFiles/pbbam.dir/SamTagCodec.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SamTagCodec.cpp.o -c /<>/pbbam-0.7.4+ds/src/SamTagCodec.cpp [ 60%] Building CXX object src/CMakeFiles/pbbam.dir/SamWriter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SamWriter.cpp.o -c /<>/pbbam-0.7.4+ds/src/SamWriter.cpp [ 62%] Building CXX object src/CMakeFiles/pbbam.dir/SequenceInfo.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SequenceInfo.cpp.o -c /<>/pbbam-0.7.4+ds/src/SequenceInfo.cpp [ 63%] Building CXX object src/CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/SubreadLengthQuery.cpp [ 64%] Building CXX object src/CMakeFiles/pbbam.dir/Tag.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Tag.cpp.o -c /<>/pbbam-0.7.4+ds/src/Tag.cpp [ 65%] Building CXX object src/CMakeFiles/pbbam.dir/TagCollection.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/TagCollection.cpp.o -c /<>/pbbam-0.7.4+ds/src/TagCollection.cpp [ 66%] Building CXX object src/CMakeFiles/pbbam.dir/Validator.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Validator.cpp.o -c /<>/pbbam-0.7.4+ds/src/Validator.cpp [ 67%] Building CXX object src/CMakeFiles/pbbam.dir/ValidationErrors.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ValidationErrors.cpp.o -c /<>/pbbam-0.7.4+ds/src/ValidationErrors.cpp [ 68%] Building CXX object src/CMakeFiles/pbbam.dir/ValidationException.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ValidationException.cpp.o -c /<>/pbbam-0.7.4+ds/src/ValidationException.cpp [ 70%] Building CXX object src/CMakeFiles/pbbam.dir/Version.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/Version.cpp.o -c /<>/pbbam-0.7.4+ds/src/Version.cpp [ 71%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o -c /<>/pbbam-0.7.4+ds/src/VirtualZmwBamRecord.cpp [ 72%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/VirtualZmwCompositeReader.cpp [ 73%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/VirtualZmwReader.cpp [ 74%] Building CXX object src/CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o -c /<>/pbbam-0.7.4+ds/src/VirtualRegionTypeMap.cpp [ 75%] Building CXX object src/CMakeFiles/pbbam.dir/XmlReader.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/XmlReader.cpp.o -c /<>/pbbam-0.7.4+ds/src/XmlReader.cpp [ 77%] Building CXX object src/CMakeFiles/pbbam.dir/XmlWriter.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/XmlWriter.cpp.o -c /<>/pbbam-0.7.4+ds/src/XmlWriter.cpp [ 78%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/ZmwGroupQuery.cpp [ 79%] Building CXX object src/CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o -c /<>/pbbam-0.7.4+ds/src/WhitelistedZmwReadStitcher.cpp [ 80%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o -c /<>/pbbam-0.7.4+ds/src/ZmwReadStitcher.cpp [ 81%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwQuery.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwQuery.cpp.o -c /<>/pbbam-0.7.4+ds/src/ZmwQuery.cpp [ 82%] Building CXX object src/CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o -c /<>/pbbam-0.7.4+ds/src/ZmwTypeMap.cpp [ 83%] Building CXX object src/CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/c++ -DPBBAM_LIBRARY -Dpbbam_EXPORTS -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -fPIC -std=gnu++11 -o CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o -c /<>/pbbam-0.7.4+ds/src/pugixml/pugixml.cpp [ 85%] Linking CXX shared library ../lib/libpbbam.so cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbbam.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libpbbam.so -o ../lib/libpbbam.so CMakeFiles/pbbam.dir/Accuracy.cpp.o CMakeFiles/pbbam.dir/AlignmentPrinter.cpp.o CMakeFiles/pbbam.dir/AssertUtils.cpp.o CMakeFiles/pbbam.dir/BaiIndexedBamReader.cpp.o CMakeFiles/pbbam.dir/BamFile.cpp.o CMakeFiles/pbbam.dir/BamHeader.cpp.o CMakeFiles/pbbam.dir/BamReader.cpp.o CMakeFiles/pbbam.dir/BamRecord.cpp.o CMakeFiles/pbbam.dir/BamRecordBuilder.cpp.o CMakeFiles/pbbam.dir/BamRecordImpl.cpp.o CMakeFiles/pbbam.dir/BamRecordTags.cpp.o CMakeFiles/pbbam.dir/BamTagCodec.cpp.o CMakeFiles/pbbam.dir/BamWriter.cpp.o CMakeFiles/pbbam.dir/BarcodeQuery.cpp.o CMakeFiles/pbbam.dir/ChemistryTable.cpp.o CMakeFiles/pbbam.dir/Cigar.cpp.o CMakeFiles/pbbam.dir/CigarOperation.cpp.o CMakeFiles/pbbam.dir/Compare.cpp.o CMakeFiles/pbbam.dir/Config.cpp.o CMakeFiles/pbbam.dir/DataSet.cpp.o CMakeFiles/pbbam.dir/DataSetBaseTypes.cpp.o CMakeFiles/pbbam.dir/DataSetElement.cpp.o CMakeFiles/pbbam.dir/DataSetIO.cpp.o CMakeFiles/pbbam.dir/DataSetTypes.cpp.o CMakeFiles/pbbam.dir/DataSetXsd.cpp.o CMakeFiles/pbbam.dir/EntireFileQuery.cpp.o CMakeFiles/pbbam.dir/FastaReader.cpp.o CMakeFiles/pbbam.dir/FileProducer.cpp.o CMakeFiles/pbbam.dir/FileUtils.cpp.o CMakeFiles/pbbam.dir/FofnReader.cpp.o CMakeFiles/pbbam.dir/Frames.cpp.o CMakeFiles/pbbam.dir/GenomicInterval.cpp.o CMakeFiles/pbbam.dir/GenomicIntervalQuery.cpp.o CMakeFiles/pbbam.dir/IndexedFastaReader.cpp.o CMakeFiles/pbbam.dir/IRecordWriter.cpp.o CMakeFiles/pbbam.dir/MD5.cpp.o CMakeFiles/pbbam.dir/MemoryUtils.cpp.o CMakeFiles/pbbam.dir/PbiBuilder.cpp.o CMakeFiles/pbbam.dir/PbiFile.cpp.o CMakeFiles/pbbam.dir/PbiFilter.cpp.o CMakeFiles/pbbam.dir/PbiFilterQuery.cpp.o CMakeFiles/pbbam.dir/PbiFilterTypes.cpp.o CMakeFiles/pbbam.dir/PbiIndex.cpp.o CMakeFiles/pbbam.dir/PbiIndexedBamReader.cpp.o CMakeFiles/pbbam.dir/PbiIndexIO.cpp.o CMakeFiles/pbbam.dir/PbiRawData.cpp.o CMakeFiles/pbbam.dir/ProgramInfo.cpp.o CMakeFiles/pbbam.dir/QNameQuery.cpp.o CMakeFiles/pbbam.dir/QualityValue.cpp.o CMakeFiles/pbbam.dir/ReadAccuracyQuery.cpp.o CMakeFiles/pbbam.dir/ReadGroupInfo.cpp.o CMakeFiles/pbbam.dir/SamTagCodec.cpp.o CMakeFiles/pbbam.dir/SamWriter.cpp.o CMakeFiles/pbbam.dir/SequenceInfo.cpp.o CMakeFiles/pbbam.dir/SubreadLengthQuery.cpp.o CMakeFiles/pbbam.dir/Tag.cpp.o CMakeFiles/pbbam.dir/TagCollection.cpp.o CMakeFiles/pbbam.dir/Validator.cpp.o CMakeFiles/pbbam.dir/ValidationErrors.cpp.o CMakeFiles/pbbam.dir/ValidationException.cpp.o CMakeFiles/pbbam.dir/Version.cpp.o CMakeFiles/pbbam.dir/VirtualZmwBamRecord.cpp.o CMakeFiles/pbbam.dir/VirtualZmwCompositeReader.cpp.o CMakeFiles/pbbam.dir/VirtualZmwReader.cpp.o CMakeFiles/pbbam.dir/VirtualRegionTypeMap.cpp.o CMakeFiles/pbbam.dir/XmlReader.cpp.o CMakeFiles/pbbam.dir/XmlWriter.cpp.o CMakeFiles/pbbam.dir/WhitelistedZmwReadStitcher.cpp.o CMakeFiles/pbbam.dir/ZmwGroupQuery.cpp.o CMakeFiles/pbbam.dir/ZmwReadStitcher.cpp.o CMakeFiles/pbbam.dir/ZmwQuery.cpp.o CMakeFiles/pbbam.dir/ZmwTypeMap.cpp.o CMakeFiles/pbbam.dir/pugixml/pugixml.cpp.o -lssl -lcrypto -lhts -lz -lpthread make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' [ 85%] Built target pbbam make -f tools/pbindex/CMakeFiles/pbindex.dir/build.make tools/pbindex/CMakeFiles/pbindex.dir/depend make -f tools/pbindexdump/CMakeFiles/pbindexdump.dir/build.make tools/pbindexdump/CMakeFiles/pbindexdump.dir/depend make -f 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'/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/pbbam-0.7.4+ds /<>/pbbam-0.7.4+ds/tools/pbindexdump /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindexdump /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindexdump/CMakeFiles/pbindexdump.dir/DependInfo.cmake --color= Scanning dependencies of target pbindex make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make -f tools/pbindex/CMakeFiles/pbindex.dir/build.make tools/pbindex/CMakeFiles/pbindex.dir/build make[3]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' Scanning dependencies of target pbmerge make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make -f tools/pbmerge/CMakeFiles/pbmerge.dir/build.make tools/pbmerge/CMakeFiles/pbmerge.dir/build Scanning dependencies of target pbindexdump make[3]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' make -f tools/pbindexdump/CMakeFiles/pbindexdump.dir/build.make tools/pbindexdump/CMakeFiles/pbindexdump.dir/build make[3]: Entering directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' [ 86%] Building CXX object tools/pbindex/CMakeFiles/pbindex.dir/src/main.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindex && /usr/bin/c++ -I/<>/pbbam-0.7.4+ds/tools/common -I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindex.dir/src/main.cpp.o -c /<>/pbbam-0.7.4+ds/tools/pbindex/src/main.cpp [ 87%] Building CXX object tools/pbindex/CMakeFiles/pbindex.dir/__/common/OptionParser.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindex && /usr/bin/c++ -I/<>/pbbam-0.7.4+ds/tools/common -I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindex.dir/__/common/OptionParser.cpp.o -c /<>/pbbam-0.7.4+ds/tools/common/OptionParser.cpp [ 88%] Building CXX object tools/pbmerge/CMakeFiles/pbmerge.dir/__/common/OptionParser.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbmerge && /usr/bin/c++ -I/<>/pbbam-0.7.4+ds/tools/common -I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs 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-I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbmerge.dir/src/main.cpp.o -c /<>/pbbam-0.7.4+ds/tools/pbmerge/src/main.cpp [ 91%] Building CXX object tools/pbindex/CMakeFiles/pbindex.dir/src/PbIndex.cpp.o cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindex && /usr/bin/c++ -I/<>/pbbam-0.7.4+ds/tools/common -I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindex.dir/src/PbIndex.cpp.o -c 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-fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindexdump.dir/src/JsonFormatter.cpp.o -c /<>/pbbam-0.7.4+ds/tools/pbindexdump/src/JsonFormatter.cpp [ 95%] Linking CXX executable ../../bin/pbindex cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindex && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbindex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/pbindex.dir/__/common/OptionParser.cpp.o CMakeFiles/pbindex.dir/src/main.cpp.o CMakeFiles/pbindex.dir/src/PbIndex.cpp.o -o ../../bin/pbindex -rdynamic ../../lib/libpbbam.so -lssl -lcrypto -lhts 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-I/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/generated -I/<>/pbbam-0.7.4+ds/include -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -std=gnu++11 -o CMakeFiles/pbindexdump.dir/src/main.cpp.o -c /<>/pbbam-0.7.4+ds/tools/pbindexdump/src/main.cpp [ 98%] Linking CXX executable ../../bin/pbindexdump cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbindexdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbindexdump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/pbindexdump.dir/__/common/OptionParser.cpp.o CMakeFiles/pbindexdump.dir/src/CppFormatter.cpp.o CMakeFiles/pbindexdump.dir/src/JsonFormatter.cpp.o CMakeFiles/pbindexdump.dir/src/PbIndexDump.cpp.o CMakeFiles/pbindexdump.dir/src/main.cpp.o -o ../../bin/pbindexdump -rdynamic ../../lib/libpbbam.so -lssl -lcrypto -lhts -lz -lpthread make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' [ 98%] Built target pbindexdump [100%] Linking CXX executable ../../bin/pbmerge cd /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/tools/pbmerge && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbmerge.dir/link.txt --verbose=1 /usr/bin/c++ -g -O3 -fdebug-prefix-map=/<>/pbbam-0.7.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unused-local-typedefs -Wno-sign-compare -Wno-unused-private-field -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/pbmerge.dir/__/common/OptionParser.cpp.o CMakeFiles/pbmerge.dir/src/main.cpp.o -o ../../bin/pbmerge -rdynamic ../../lib/libpbbam.so -lssl -lcrypto -lhts -lz -lpthread make[3]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' [100%] Built target pbmerge make[2]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/pbbam-0.7.4+ds/obj-powerpc64le-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/pbbam-0.7.4+ds' sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbmerge_pacbio_ordering.t.in > tests/src/cram/pbmerge_pacbio_ordering.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbmerge_mixed_ordering.t.in > tests/src/cram/pbmerge_mixed_ordering.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbmerge_aligned_ordering.t.in > tests/src/cram/pbmerge_aligned_ordering.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbindexdump_json.t.in > tests/src/cram/pbindexdump_json.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbindexdump_cpp.t.in > tests/src/cram/pbindexdump_cpp.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbmerge_fofn.t.in > tests/src/cram/pbmerge_fofn.deb.t sed \ -e 's/$BAM2SAM/samtools view/g' \ -e 's/\-\-header\-only/-H/g' \ -e 's/\-\-no\-header//g' \ -e 's|@PacBioBAM_BinDir@/||g' \ -e 's|$TOOLS_BIN/||g' \ -e 's|@PacBioBAM_TestsDir@|/<>/pbbam-0.7.4+ds/tests|g' \ -e 's|@PacBioBAM_VERSION@|0.7.4|g' \ -e 's|@GeneratedTestDataDir@|/<>/pbbam-0.7.4+ds/gendata|g' \ tests/src/cram/pbmerge_dataset.t.in > tests/src/cram/pbmerge_dataset.deb.t mkdir -p /<>/pbbam-0.7.4+ds/gendata python tests/scripts/generate_data.py /<>/pbbam-0.7.4+ds/tests/data /<>/pbbam-0.7.4+ds/gendata Generating test data in /<>/pbbam-0.7.4+ds/gendata - Creating file: truncated.bam...done. - Creating file: normal.fa...done. - Creating file: chunking_missingfilters.subreadset.xml...done. - Creating file: chunking_emptyfilters.subreadset.xml...done. - Creating symlink: missing_pbi.bam...done. - Creating symlink: aligned.bam.bai...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam...done. - Creating symlink: aligned2.bam.pbi...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi...done. - Creating symlink: aligned2.bam.bai...done. - Creating symlink: aligned2.bam...done. - Creating symlink: aligned.bam...done. - Creating symlink: aligned.bam.pbi...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi...done. - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam...done. BINDIR=`find $PWD -name bin -type d`; \ LIBDIR=`find $PWD -name lib -type d`; \ PATH="$BINDIR:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games" LD_LIBRARY_PATH="$LIBDIR:" \ cram -v tests/src/cram/pbmerge_pacbio_ordering.deb.t tests/src/cram/pbmerge_mixed_ordering.deb.t tests/src/cram/pbmerge_aligned_ordering.deb.t tests/src/cram/pbindexdump_json.deb.t tests/src/cram/pbindexdump_cpp.deb.t tests/src/cram/pbmerge_fofn.deb.t tests/src/cram/pbmerge_dataset.deb.t tests/src/cram/pbmerge_pacbio_ordering.deb.t: passed tests/src/cram/pbmerge_mixed_ordering.deb.t: passed tests/src/cram/pbmerge_aligned_ordering.deb.t: passed tests/src/cram/pbindexdump_json.deb.t: passed tests/src/cram/pbindexdump_cpp.deb.t: passed tests/src/cram/pbmerge_fofn.deb.t: passed tests/src/cram/pbmerge_dataset.deb.t: passed # Ran 7 tests, 0 skipped, 0 failed. make[1]: Leaving directory '/<>/pbbam-0.7.4+ds' fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/pbbam-0.7.4+ds' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/<>/pbbam-0.7.4+ds' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: pbbamtools libpbbam libpbbam-dev dh_strip debug symbol extraction: packages to act on: pbbamtools libpbbam libpbbam-dev dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libpbbam-dev has no unstripped objects, ignoring find: ‘/<>/pbbam-0.7.4+ds/debian/libpbbam-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/pbbam-0.7.4+ds/debian/libpbbam-dev-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: couldn't find library libpbbam.so needed by debian/pbbamtools/usr/bin/pbindexdump (ELF format: 'elf64-powerpcle'; RPATH: '') dpkg-shlibdeps: warning: couldn't find library libpbbam.so needed by debian/pbbamtools/usr/bin/pbmerge (ELF format: 'elf64-powerpcle'; RPATH: '') dpkg-shlibdeps: warning: couldn't find library libpbbam.so needed by debian/pbbamtools/usr/bin/pbindex (ELF format: 'elf64-powerpcle'; RPATH: '') dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform ppc64el: pbbamtools libpbbam libpbbam-dev dh_gencontrol debug symbol wrapper: packages to act on: pbbamtools libpbbam libpbbam-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package pbbamtools (pkgdir debian/pbbamtools, ddeb package dir debian/pbbamtools-dbgsym) dh_gencontrol debug symbol wrapper: building pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb dpkg-deb: building package 'pbbamtools-dbgsym' in '../pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package libpbbam (pkgdir debian/libpbbam, ddeb package dir debian/libpbbam-dbgsym) dh_gencontrol debug symbol wrapper: building libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb dpkg-deb: building package 'libpbbam-dbgsym' in '../libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb libs extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libpbbam-dev-dbgsym, skipping package libpbbam-dev dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libpbbam-dev (in debian/libpbbam-dev); do_strip: , oemstrip: pkgstriptranslations: processing pbbamtools (in debian/pbbamtools); do_strip: , oemstrip: pkgstriptranslations: processing libpbbam (in debian/libpbbam); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpbbam-dev/DEBIAN/control, package libpbbam-dev, directory debian/libpbbam-dev .. removing usr/share/doc/libpbbam-dev/changelog.gz INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... pkgstripfiles: processing control file: debian/libpbbam/DEBIAN/control, package libpbbam, directory debian/libpbbam .. removing usr/share/doc/libpbbam/changelog.gz INFO: pkgstripfiles: waiting for lock (libpbbam) ... INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... INFO: pkgstripfiles: waiting for lock (libpbbam) ... INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... INFO: pkgstripfiles: waiting for lock (libpbbam) ... INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... INFO: pkgstripfiles: waiting for lock (libpbbam) ... INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... INFO: pkgstripfiles: waiting for lock (libpbbam) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/pbbamtools/DEBIAN/control, package pbbamtools, directory debian/pbbamtools .. removing usr/share/doc/pbbamtools/changelog.gz Searching for duplicated docs in dependency libpbbam... INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... symlinking changelog.Debian.gz in pbbamtools to file in libpbbam INFO: pkgstripfiles: waiting for lock (libpbbam) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package pbbamtools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'pbbamtools' in '../pbbamtools_0.7.4+ds-1_ppc64el.deb'. INFO: pkgstripfiles: waiting for lock (libpbbam-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpbbam ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpbbam' in '../libpbbam_0.7.4+ds-1_ppc64el.deb'. Searching for duplicated docs in dependency libpbbam... symlinking changelog.Debian.gz in libpbbam-dev to file in libpbbam pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpbbam-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpbbam-dev' in '../libpbbam-dev_0.7.4+ds-1_ppc64el.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../pbbam_0.7.4+ds-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build pbbam-0.7.4+ds dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170122-1714 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pbbam_0.7.4+ds-1_ppc64el.changes: --------------------------------- Format: 1.8 Date: Sat, 21 Jan 2017 23:48:21 -0800 Source: pbbam Binary: pbbamtools libpbbam libpbbam-dev Architecture: ppc64el Version: 0.7.4+ds-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: libpbbam - Pacific Biosciences binary alignment/map (BAM) library libpbbam-dev - Pacific Biosciences binary alignment/map (BAM) library (headers) pbbamtools - processing Pacific Biosciences binary alignment/map files Changes: pbbam (0.7.4+ds-1) unstable; urgency=medium . * New upstream release snapshot - Exclude dependency convenience copy - Update patches - Update running of tests at build-time - Update .install files - Update autopkgtest commands * Use debhelper compat 10 * libpbbam-dev: depend on libssl-dev Checksums-Sha1: 413e2102e172b78409bf9127b906087886d009f4 6747130 libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb dc31804e2d21b7349db75d32954d652e82137f95 82506 libpbbam-dev_0.7.4+ds-1_ppc64el.deb b8ef9a626bdd86af2d6f39f015f319afddf4aafd 484504 libpbbam_0.7.4+ds-1_ppc64el.deb 42d1d7e6778db50e28c5ecbb69364da22db8d4eb 1144106 pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb 83222ba6db31d3c8b788d749aa08d6c90aa446e0 111594 pbbamtools_0.7.4+ds-1_ppc64el.deb Checksums-Sha256: bdc1e725a07bb3a8731b127f66e8aa00f7bd61b35727ad95c766c82fc2882a48 6747130 libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb 811fd5de0c2007dba4f79ff75ff4c7f0966d5f03c84dd92ae592f99db6393439 82506 libpbbam-dev_0.7.4+ds-1_ppc64el.deb 20309ce1ff97a725bda4ae784d6f0ff1b41b0380a669fa2d241c43cf94dfa4df 484504 libpbbam_0.7.4+ds-1_ppc64el.deb 6d02024b3a99fce70e3dedc70795f2909120bd8a14bb30b8e56782b11ba8babf 1144106 pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb 8332898e7f4a3ec0c8667660d05fd8137c946801d4d4d019b0ab510ba2397f05 111594 pbbamtools_0.7.4+ds-1_ppc64el.deb Files: 7f78c1a22d830536a4560a7dec3d2d7e 6747130 libs extra libpbbam-dbgsym_0.7.4+ds-1_ppc64el.ddeb 03b3f8bda8934c0c2be3e5bb531ba855 82506 libdevel optional libpbbam-dev_0.7.4+ds-1_ppc64el.deb 6e8a267fe586c347373f83b8136dbade 484504 libs optional libpbbam_0.7.4+ds-1_ppc64el.deb f538fbb8318304681d66033f30d5b547 1144106 science extra pbbamtools-dbgsym_0.7.4+ds-1_ppc64el.ddeb 1c935b8e3a0f6183f3537da8aff2fd07 111594 science optional pbbamtools_0.7.4+ds-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libpbbam-dev_0.7.4+ds-1_ppc64el.deb ----------------------------------- new debian package, version 2.0. size 82506 bytes: control archive=4169 bytes. 1074 bytes, 23 lines control 8480 bytes, 118 lines md5sums Package: libpbbam-dev Source: pbbam Version: 0.7.4+ds-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 851 Depends: libpbbam (= 0.7.4+ds-1), libhts-dev, libssl-dev Section: libdevel Priority: optional Homepage: http://pbbam.readthedocs.org/en/latest/index.html Description: Pacific Biosciences binary alignment/map (BAM) library (headers) The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group. . PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information. The pbbam library provides tools to work with these files . This package contains the library header files. drwxr-xr-x root/root 0 2017-01-22 07:48 ./ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/include/ drwxr-xr-x root/root 0 2016-12-07 07:36 ./usr/include/pbbam/ -rw-r--r-- root/root 2979 2016-12-07 07:36 ./usr/include/pbbam/Accuracy.h -rw-r--r-- root/root 3732 2016-12-07 07:36 ./usr/include/pbbam/AlignmentPrinter.h -rw-r--r-- root/root 4690 2016-12-07 07:36 ./usr/include/pbbam/BaiIndexedBamReader.h -rw-r--r-- root/root 7249 2016-12-07 07:36 ./usr/include/pbbam/BamFile.h -rw-r--r-- root/root 12767 2016-12-07 07:36 ./usr/include/pbbam/BamHeader.h -rw-r--r-- root/root 5969 2016-12-07 07:36 ./usr/include/pbbam/BamReader.h -rw-r--r-- root/root 45524 2016-12-07 07:36 ./usr/include/pbbam/BamRecord.h -rw-r--r-- root/root 9628 2016-12-07 07:36 ./usr/include/pbbam/BamRecordBuilder.h -rw-r--r-- root/root 23435 2016-12-07 07:36 ./usr/include/pbbam/BamRecordImpl.h -rw-r--r-- root/root 2676 2016-12-07 07:36 ./usr/include/pbbam/BamRecordTag.h -rw-r--r-- root/root 6507 2016-12-07 07:36 ./usr/include/pbbam/BamRecordView.h -rw-r--r-- root/root 4559 2016-12-07 07:36 ./usr/include/pbbam/BamTagCodec.h -rw-r--r-- root/root 7490 2016-12-07 07:36 ./usr/include/pbbam/BamWriter.h -rw-r--r-- root/root 3401 2016-12-07 07:36 ./usr/include/pbbam/BarcodeQuery.h -rw-r--r-- root/root 3706 2016-12-07 07:36 ./usr/include/pbbam/Cigar.h -rw-r--r-- root/root 5913 2016-12-07 07:36 ./usr/include/pbbam/CigarOperation.h -rw-r--r-- root/root 2570 2016-12-07 07:36 ./usr/include/pbbam/ClipType.h -rw-r--r-- root/root 14898 2016-12-07 07:36 ./usr/include/pbbam/Compare.h -rw-r--r-- root/root 8943 2016-12-07 07:36 ./usr/include/pbbam/CompositeBamReader.h -rw-r--r-- root/root 6063 2016-12-07 07:36 ./usr/include/pbbam/Config.h -rw-r--r-- root/root 25427 2016-12-07 07:36 ./usr/include/pbbam/DataSet.h -rw-r--r-- root/root 27928 2016-12-07 07:36 ./usr/include/pbbam/DataSetTypes.h -rw-r--r-- root/root 4775 2016-12-07 07:36 ./usr/include/pbbam/DataSetXsd.h -rw-r--r-- root/root 3546 2016-12-07 07:36 ./usr/include/pbbam/EntireFileQuery.h -rw-r--r-- root/root 3327 2016-12-07 07:36 ./usr/include/pbbam/FastaReader.h -rw-r--r-- root/root 3020 2016-12-07 07:36 ./usr/include/pbbam/FastaSequence.h -rw-r--r-- root/root 2621 2016-12-07 07:36 ./usr/include/pbbam/FrameEncodingType.h -rw-r--r-- root/root 5694 2016-12-07 07:36 ./usr/include/pbbam/Frames.h -rw-r--r-- root/root 5717 2016-12-07 07:36 ./usr/include/pbbam/GenomicInterval.h -rw-r--r-- root/root 4047 2016-12-07 07:36 ./usr/include/pbbam/GenomicIntervalQuery.h -rw-r--r-- root/root 3081 2016-12-07 07:36 ./usr/include/pbbam/IRecordWriter.h -rw-r--r-- root/root 5813 2016-12-07 07:36 ./usr/include/pbbam/IndexedFastaReader.h -rw-r--r-- root/root 4443 2016-12-07 07:36 ./usr/include/pbbam/Interval.h -rw-r--r-- root/root 3159 2016-12-07 07:36 ./usr/include/pbbam/LocalContextFlags.h -rw-r--r-- root/root 2144 2016-12-07 07:36 ./usr/include/pbbam/MD5.h -rw-r--r-- root/root 2733 2016-12-07 07:36 ./usr/include/pbbam/Orientation.h -rw-r--r-- root/root 3995 2016-12-07 07:36 ./usr/include/pbbam/PbiBasicTypes.h -rw-r--r-- root/root 8614 2016-12-07 07:36 ./usr/include/pbbam/PbiBuilder.h -rw-r--r-- root/root 3489 2016-12-07 07:36 ./usr/include/pbbam/PbiFile.h -rw-r--r-- root/root 11319 2016-12-07 07:36 ./usr/include/pbbam/PbiFilter.h -rw-r--r-- root/root 3393 2016-12-07 07:36 ./usr/include/pbbam/PbiFilterQuery.h -rw-r--r-- root/root 33584 2016-12-07 07:36 ./usr/include/pbbam/PbiFilterTypes.h -rw-r--r-- root/root 5072 2016-12-07 07:36 ./usr/include/pbbam/PbiIndex.h -rw-r--r-- root/root 5843 2016-12-07 07:36 ./usr/include/pbbam/PbiIndexedBamReader.h -rw-r--r-- root/root 22354 2016-12-07 07:36 ./usr/include/pbbam/PbiLookupData.h -rw-r--r-- root/root 14974 2016-12-07 07:36 ./usr/include/pbbam/PbiRawData.h -rw-r--r-- root/root 2466 2016-12-07 07:36 ./usr/include/pbbam/Position.h -rw-r--r-- root/root 6518 2016-12-07 07:36 ./usr/include/pbbam/ProgramInfo.h -rw-r--r-- root/root 2297 2016-12-07 07:36 ./usr/include/pbbam/PulseBehavior.h -rw-r--r-- root/root 3526 2016-12-07 07:36 ./usr/include/pbbam/QNameQuery.h -rw-r--r-- root/root 3518 2016-12-07 07:36 ./usr/include/pbbam/QualityValue.h -rw-r--r-- root/root 6677 2016-12-07 07:36 ./usr/include/pbbam/QualityValues.h -rw-r--r-- root/root 3675 2016-12-07 07:36 ./usr/include/pbbam/ReadAccuracyQuery.h -rw-r--r-- root/root 19465 2016-12-07 07:36 ./usr/include/pbbam/ReadGroupInfo.h -rw-r--r-- root/root 2529 2016-12-07 07:36 ./usr/include/pbbam/RecordType.h -rw-r--r-- root/root 2935 2016-12-07 07:36 ./usr/include/pbbam/SamTagCodec.h -rw-r--r-- root/root 4507 2016-12-07 07:36 ./usr/include/pbbam/SamWriter.h -rw-r--r-- root/root 6821 2016-12-07 07:36 ./usr/include/pbbam/SequenceInfo.h -rw-r--r-- root/root 2256 2016-12-07 07:36 ./usr/include/pbbam/Strand.h -rw-r--r-- root/root 3616 2016-12-07 07:36 ./usr/include/pbbam/SubreadLengthQuery.h -rw-r--r-- root/root 16269 2016-12-07 07:36 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./usr/include/pbbam/virtual/WhitelistedZmwReadStitcher.h -rw-r--r-- root/root 4234 2016-12-07 07:36 ./usr/include/pbbam/virtual/ZmwReadStitcher.h -rw-r--r-- root/root 2280 2016-12-07 07:36 ./usr/include/pbbam/virtual/ZmwWhitelistVirtualReader.h drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/libpbbam-dev/ lrwxrwxrwx root/root 0 2017-01-22 07:48 ./usr/share/doc/libpbbam-dev/changelog.Debian.gz -> ../libpbbam/changelog.Debian.gz -rw-r--r-- root/root 8122 2016-12-19 05:12 ./usr/share/doc/libpbbam-dev/copyright libpbbam_0.7.4+ds-1_ppc64el.deb ------------------------------- new debian package, version 2.0. size 484504 bytes: control archive=999 bytes. 1073 bytes, 22 lines control 291 bytes, 4 lines md5sums 26 bytes, 1 lines triggers Package: libpbbam Source: pbbam Version: 0.7.4+ds-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2016 Depends: libc6 (>= 2.17), libgcc1 (>= 1:4.2), libhts1 (>= 1.3), libssl1.0.0 (>= 1.0.0), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: http://pbbam.readthedocs.org/en/latest/index.html Description: Pacific Biosciences binary alignment/map (BAM) library The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group. . PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information. The pbbam library provides tools to work with these files drwxr-xr-x root/root 0 2017-01-22 07:48 ./ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/lib/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 2035456 2017-01-22 07:48 ./usr/lib/powerpc64le-linux-gnu/libpbbam.so drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/libpbbam/ -rw-r--r-- root/root 829 2017-01-22 07:48 ./usr/share/doc/libpbbam/changelog.Debian.gz -rw-r--r-- root/root 8122 2016-12-19 05:12 ./usr/share/doc/libpbbam/copyright drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 429 2016-12-19 05:11 ./usr/share/lintian/overrides/libpbbam pbbamtools_0.7.4+ds-1_ppc64el.deb --------------------------------- new debian package, version 2.0. size 111594 bytes: control archive=957 bytes. 1093 bytes, 24 lines control 294 bytes, 5 lines md5sums Package: pbbamtools Source: pbbam Version: 0.7.4+ds-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 609 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), libpbbam (= 0.7.4+ds-1) Recommends: samtools Section: science Priority: optional Homepage: http://pbbam.readthedocs.org/en/latest/index.html Description: processing Pacific Biosciences binary alignment/map files The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group. . PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information. . This package provides command-line utilities for working with PacBio BAM files. drwxr-xr-x root/root 0 2017-01-22 07:48 ./ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/bin/ -rwxr-xr-x root/root 133288 2017-01-22 07:48 ./usr/bin/pbindex -rwxr-xr-x root/root 264360 2017-01-22 07:48 ./usr/bin/pbindexdump -rwxr-xr-x root/root 198824 2017-01-22 07:48 ./usr/bin/pbmerge drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-01-22 07:48 ./usr/share/doc/pbbamtools/ -rw-r--r-- root/root 97 2016-12-19 05:11 ./usr/share/doc/pbbamtools/TODO.Debian lrwxrwxrwx root/root 0 2017-01-22 07:48 ./usr/share/doc/pbbamtools/changelog.Debian.gz -> ../libpbbam/changelog.Debian.gz -rw-r--r-- root/root 8122 2016-12-19 05:12 ./usr/share/doc/pbbamtools/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 200840 Build-Time: 136 Distribution: zesty-proposed Host Architecture: ppc64el Install-Time: 22 Job: pbbam_0.7.4+ds-1.dsc Machine Architecture: ppc64el Package: pbbam Package-Time: 160 Source-Version: 0.7.4+ds-1 Space: 200840 Status: successful Version: 0.7.4+ds-1 -------------------------------------------------------------------------------- Finished at 20170122-1714 Build needed 00:02:40, 200840k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11901340'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11901340/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11901340'] Unmounting chroot for build PACKAGEBUILD-11901340... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11901340'] Removing build PACKAGEBUILD-11901340