https://launchpad.net/ubuntu/+source/pbcopper/1.3.0+dfsg-3build1/+build/18879999 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-021 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:03:00 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 23 Mar 10:17:36 ntpdate[1931]: adjust time server 10.211.37.1 offset 0.010317 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18879999 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18879999 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18879999 Starting target for build PACKAGEBUILD-18879999 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18879999 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18879999 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18879999 Updating target for build PACKAGEBUILD-18879999 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [938 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8342 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5150 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [101 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [46.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [509 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [362 kB] Fetched 16.6 MB in 7s (2486 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils dpkg dpkg-dev e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux zlib1g 120 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 62.2 MB of archives. After this operation, 41.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200321-1ubuntu1 [18.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200321-1ubuntu1 [36.2 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.31-0ubuntu6 [1914 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.31-0ubuntu6 [63.6 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libcrypt-dev armhf 1:4.4.10-10ubuntu4 [120 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf linux-libc-dev armhf 5.4.0-18.22 [1138 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libcrypt1 armhf 1:4.4.10-10ubuntu4 [93.5 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.31-0ubuntu6 [2133 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.31-0ubuntu6 [489 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu4 [59.8 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-6ubuntu1 [577 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu8 [58.0 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main armhf dpkg armhf 1.19.7ubuntu3 [1084 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf findutils armhf 4.7.0-1ubuntu1 [307 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8.1-1ubuntu3 [218 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.2-0ubuntu2 [79.7 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.2-0ubuntu2 [73.8 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.2-0ubuntu2 [164 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.2-0ubuntu2 [106 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9build1 [2737 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9build1 [3288 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9build1 [224 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9build1 [1407 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libdb5.3 armhf 5.3.28+dfsg1-0.6ubuntu2 [597 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g armhf 1:1.2.11.dfsg-2ubuntu1 [48.7 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu8 [124 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu8 [19.4 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu8 [163 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:36 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libselinux1 armhf 3.0-1build2 [60.1 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu8 [135 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu8 [88.6 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu8 [109 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu8 [958 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libdebconfclient0 armhf 0.251ubuntu1 [5592 B] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-2.1ubuntu1 [19.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.37-1 [50.0 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-5ubuntu1 [365 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200321-1ubuntu1 [440 kB] Get:50 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd-sysv armhf 245.2-1ubuntu1 [9524 B] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-6 [15.9 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu2 [29.1 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu6 [35.8 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.32-1 [14.0 kB] Get:57 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libudev1 armhf 245.2-1ubuntu1 [70.1 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu1 [118 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-7 [25.6 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu6 [1081 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu2 [163 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libgmp10 armhf 2:6.2.0+dfsg-4 [193 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:65 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libffi7 armhf 3.3-3build1 [16.5 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.16.0-2 [33.1 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libip4tc2 armhf 1.8.4-3ubuntu2 [16.8 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 27-1ubuntu2 [38.4 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libseccomp2 armhf 2.4.3-0ubuntu2 [32.2 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu8 [108 kB] Get:74 http://ftpmaster.internal/ubuntu focal-proposed/main armhf systemd armhf 245.2-1ubuntu1 [3656 kB] Get:75 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsystemd0 armhf 245.2-1ubuntu1 [249 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-3 [207 kB] Get:77 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libapt-pkg6.0 armhf 2.0.0 [750 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.10 [774 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.19-3ubuntu2 [170 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:81 http://ftpmaster.internal/ubuntu focal-proposed/main armhf apt armhf 2.0.0 [1241 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.5-2ubuntu1 [9568 B] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.5-2ubuntu1 [170 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.5-2ubuntu1 [508 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:88 http://ftpmaster.internal/ubuntu focal/universe armhf libgcc1 armhf 1:10-20200321-1ubuntu1 [36.0 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpcre3 armhf 2:8.39-12build1 [212 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage-common all 3.0-1build2 [9792 B] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage1 armhf 3.0-1build2 [74.1 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8.1-1ubuntu3 [750 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22.1-1 [460 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200321-1ubuntu1 [34.6 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libctf-nobfd0 armhf 2.34-5ubuntu1 [37.7 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libctf0 armhf 2.34-5ubuntu1 [37.1 kB] Get:99 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libbinutils armhf 2.34-5ubuntu1 [318 kB] Get:100 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils-common armhf 2.34-5ubuntu1 [207 kB] Get:101 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils armhf 2.34-5ubuntu1 [3372 B] Get:102 http://ftpmaster.internal/ubuntu focal-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.34-5ubuntu1 [2092 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200321-1ubuntu1 [86.8 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200321-1ubuntu1 [7196 B] Get:105 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libasan5 armhf 9.3.0-7ubuntu1 [387 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200321-1ubuntu1 [121 kB] Get:107 http://ftpmaster.internal/ubuntu focal-proposed/main armhf g++-9 armhf 9.3.0-7ubuntu1 [6687 kB] Get:108 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++-9-dev armhf 9.3.0-7ubuntu1 [1780 kB] Get:109 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9 armhf 9.3.0-7ubuntu1 [6549 kB] Get:110 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-9-dev armhf 9.3.0-7ubuntu1 [681 kB] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main armhf cpp-9 armhf 9.3.0-7ubuntu1 [5878 kB] Get:112 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9-base armhf 9.3.0-7ubuntu1 [19.2 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libcom-err2 armhf 1.45.5-2ubuntu1 [8556 B] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf libprocps8 armhf 2:3.3.16-1ubuntu2 [29.9 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf libss2 armhf 1.45.5-2ubuntu1 [9400 B] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf mawk armhf 1.3.4.20200120-2 [85.1 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main armhf procps armhf 2:3.3.16-1ubuntu2 [222 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf readline-common all 8.0-4 [53.5 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main armhf libreadline8 armhf 8.0-4 [109 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.31.1-3 [467 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu6 [597 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main armhf tzdata all 2019c-3ubuntu1 [294 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main armhf libpng16-16 armhf 1.6.37-2 [162 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main armhf advancecomp armhf 2.1-2.1build1 [162 kB] Get:126 http://ftpmaster.internal/ubuntu focal-proposed/main armhf dpkg-dev all 1.19.7ubuntu3 [679 kB] Get:127 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libdpkg-perl all 1.19.7ubuntu3 [230 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:129 http://ftpmaster.internal/ubuntu focal-proposed/main armhf pinentry-curses armhf 1.1.0-3build1 [31.8 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.19-3ubuntu2 [425 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.19-3ubuntu2 [107 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.19-3ubuntu2 [195 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.2 MB in 4s (15.1 MB/s) Selecting previously unselected package gcc-10-base:armhf. (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200321-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200321-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200321-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12493 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200321-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200321-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:armhf (10-20200321-1ubuntu1) ... (Reading database ... 12495 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.31-0ubuntu6_armhf.deb ... Unpacking libc6-dev:armhf (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.31-0ubuntu6_armhf.deb ... Unpacking libc-dev-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... 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Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 23 10:18:32 UTC 2020. Universal Time is now: Mon Mar 23 10:18:32 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:armhf (9.3.0-7ubuntu1) ... Setting up libncurses6:armhf (6.2-0ubuntu2) ... Setting up libpng16-16:armhf (1.6.37-2) ... Setting up libatomic1:armhf (10-20200321-1ubuntu1) ... Setting up libss2:armhf (1.45.5-2ubuntu1) ... Setting up logsave (1.45.5-2ubuntu1) ... Setting up libubsan1:armhf (10-20200321-1ubuntu1) ... Setting up advancecomp (2.1-2.1build1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.167-1ubuntu1) ... Setting up mount (2.34-0.1ubuntu8) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:armhf (1:4.4.10-10ubuntu4) ... Setting up libperl5.30:armhf (5.30.0-9build1) ... Setting up libisl22:armhf (0.22.1-1) ... Setting up mawk (1.3.4.20200120-2) ... Setting up liblockfile1:armhf (1.16-1.1) ... Setting up libjson-c4:armhf (0.13.1+dfsg-7) ... Setting up libbinutils:armhf (2.34-5ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu6) ... Setting up openssl (1.1.1d-2ubuntu6) ... Setting up readline-common (8.0-4) ... Setting up libcc1-0:armhf (10-20200321-1ubuntu1) ... Setting up libprocps8:armhf (2:3.3.16-1ubuntu2) ... Setting up libkmod2:armhf (27-1ubuntu2) ... Setting up libctf0:armhf (2.34-5ubuntu1) ... Setting up pinentry-curses (1.1.0-3build1) ... Setting up libreadline8:armhf (8.0-4) ... Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up libgcc-9-dev:armhf (9.3.0-7ubuntu1) ... Setting up perl (5.30.0-9build1) ... Setting up libdpkg-perl (1.19.7ubuntu3) ... Setting up procps (2:3.3.16-1ubuntu2) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up gpgconf (2.2.19-3ubuntu2) ... Setting up cpp-9 (9.3.0-7ubuntu1) ... Setting up libc6-dev:armhf (2.31-0ubuntu6) ... Setting up libcryptsetup12:armhf (2:2.2.2-3ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.34-5ubuntu1) ... Setting up gpg (2.2.19-3ubuntu2) ... Setting up gpg-agent (2.2.19-3ubuntu2) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libstdc++-9-dev:armhf (9.3.0-7ubuntu1) ... Setting up systemd (245.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-5ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu3) ... Setting up gcc-9 (9.3.0-7ubuntu1) ... Setting up systemd-sysv (245.2-1ubuntu1) ... Setting up g++-9 (9.3.0-7ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18879999 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18879999 --arch=armhf --dist=focal-proposed --nolog pbcopper_1.3.0+dfsg-3build1.dsc Initiating build PACKAGEBUILD-18879999 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:03:00 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-021.buildd +==============================================================================+ | pbcopper 1.3.0+dfsg-3build1 (armhf) 23 Mar 2020 10:18 | +==============================================================================+ Package: pbcopper Version: 1.3.0+dfsg-3build1 Source Version: 1.3.0+dfsg-3build1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/pbcopper-w50l2K/pbcopper-1.3.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pbcopper-w50l2K' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18879999/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pbcopper_1.3.0+dfsg-3build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-F2dq7g/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-F2dq7g/apt_archive ./ InRelease Get:2 copy:/<>/resolver-F2dq7g/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-F2dq7g/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-F2dq7g/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-F2dq7g/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (91.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-F2dq7g/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (73.0 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev Filtered Build-Depends: debhelper-compat (= 12), meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev dpkg-deb: building package 'sbuild-build-depends-pbcopper-dummy' in '/<>/resolver-x6Aeet/apt_archive/sbuild-build-depends-pbcopper-dummy.deb'. Ign:1 copy:/<>/resolver-x6Aeet/apt_archive ./ InRelease Get:2 copy:/<>/resolver-x6Aeet/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-x6Aeet/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-x6Aeet/apt_archive ./ Sources [253 B] Get:5 copy:/<>/resolver-x6Aeet/apt_archive ./ Packages [570 B] Fetched 2942 B in 0s (82.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install pbcopper build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.71-dev libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libgtest-dev libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db meson mime-support ninja-build pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libboost-dev libboost1.71-dev libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libgtest-dev libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml2 m4 man-db meson mime-support ninja-build pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal sbuild-build-depends-pbcopper-dummy 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 38.7 MB of archives. After this operation, 252 MB of additional disk space will be used. 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libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main armhf libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-2ubuntu1 [134 kB] Get:54 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libnghttp2-14 armhf 1.40.0-1build1 [67.8 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libssh-4 armhf 0.9.3-2ubuntu1 [147 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libcurl4 armhf 7.68.0-1ubuntu1 [202 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libjsoncpp1 armhf 1.7.4-3.1ubuntu2 [65.1 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf librhash0 armhf 1.3.9-1 [125 kB] Get:60 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focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:71 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.9ubuntu1 [869 kB] Get:75 http://ftpmaster.internal/ubuntu focal/universe armhf googletest all 1.10.0-2 [623 kB] Get:76 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost1.71-dev armhf 1.71.0-6ubuntu5 [9071 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libboost-dev armhf 1.71.0.0ubuntu1 [3600 B] Get:78 http://ftpmaster.internal/ubuntu focal/universe armhf libgtest-dev armhf 1.10.0-2 [218 kB] Get:79 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf ninja-build armhf 1.10.0-1build1 [95.8 kB] Get:80 http://ftpmaster.internal/ubuntu focal/universe armhf meson all 0.53.2-2ubuntu2 [376 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu4 [42.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.7 MB in 1s (26.3 MB/s) Selecting previously unselected package libpython3.8-minimal:armhf. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1_armhf.deb ... Unpacking libpython3.8-minimal:armhf (3.8.2-1ubuntu1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.9-1build1_armhf.deb ... Unpacking libexpat1:armhf (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1_armhf.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1) ... Setting up libpython3.8-minimal:armhf (3.8.2-1ubuntu1) ... Setting up libexpat1:armhf (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14798 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_armhf.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... 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Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up meson (0.53.2-2ubuntu2) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:armhf (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl4:armhf (7.68.0-1ubuntu1) ... Setting up cmake (3.16.3-1ubuntu1) ... Setting up debhelper (12.9ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-pbcopper-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-176-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-7ubuntu1 gcc-9_9.3.0-7ubuntu1 libc6-dev_2.31-0ubuntu6 libstdc++-9-dev_9.3.0-7ubuntu1 libstdc++6_10-20200321-1ubuntu1 linux-libc-dev_5.4.0-18.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-arm-linux-gnueabihf_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 cmake_3.16.3-1ubuntu1 cmake-data_3.16.3-1ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.3.0-7ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu8 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.3.0-7ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200321-1ubuntu1 gcc-9_9.3.0-7ubuntu1 gcc-9-base_9.3.0-7ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 googletest_1.10.0-2 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libarchive13_3.4.0-1ubuntu2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-7ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200321-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libboost-dev_1.71.0.0ubuntu1 libboost1.71-dev_1.71.0-6ubuntu5 libbrotli1_1.0.7-6build1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu6 libc-dev-bin_2.31-0ubuntu6 libc6_2.31-0ubuntu6 libc6-dev_2.31-0ubuntu6 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200321-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libcurl4_7.68.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu8 libffi6_3.2.1-9 libffi7_3.3-3build1 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-7ubuntu1 libgcc-s1_10-20200321-1ubuntu1 libgcc1_1:10-20200321-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200321-1ubuntu1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1 libgtest-dev_1.10.0-2 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.7.0+dfsg-1 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7 libjsoncpp1_1.7.4-3.1ubuntu2 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_27-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 libldap-2.4-2_2.4.49+dfsg-2ubuntu1 libldap-common_2.4.49+dfsg-2ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1build1 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libpsl5_0.20.2-2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libreadline8_8.0-4 librhash0_1.3.9-1 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-0ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-3 libss2_1.45.5-2ubuntu1 libssh-4_0.9.3-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-7ubuntu1 libstdc++6_10-20200321-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libubsan1_10-20200321-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libuv1_1.34.2-1ubuntu1 libwind0-heimdal_7.7.0+dfsg-1 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-18.22 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 meson_0.53.2-2ubuntu2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 ninja-build_1.10.0-1build1 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkg-config_0.29.1-0ubuntu4 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 python3_3.8.2-0ubuntu2 python3-minimal_3.8.2-0ubuntu2 python3.8_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbcopper-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.2-1ubuntu1 systemd-sysv_245.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Mar 23 06:42:15 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pbcopper_1.3.0+dfsg-3build1.dsc dpkg-source: info: extracting pbcopper in pbcopper-1.3.0+dfsg dpkg-source: info: unpacking pbcopper_1.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking pbcopper_1.3.0+dfsg-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_test_relying_on_clock.patch dpkg-source: info: applying meson.patch dpkg-source: info: applying simde Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18879999 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18879999 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18879999 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 1.3.0+dfsg-3build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --builddirectory=build dh_auto_clean -O--builddirectory=build dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build-arch dh build-arch --builddirectory=build dh_update_autotools_config -a -O--builddirectory=build dh_autoreconf -a -O--builddirectory=build dh_auto_configure -a -O--builddirectory=build cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf The Meson build system Version: 0.53.2 Source dir: /<>/pbcopper-1.3.0+dfsg Build dir: /<>/pbcopper-1.3.0+dfsg/build Build type: native build Project name: pbcopper Project version: 1.3.0 Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' Appending LDFLAGS from environment: ['-Wl,-Bsymbolic-functions', '-Wl,-z,relro'] Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3' Appending LDFLAGS from environment: ['-Wl,-Bsymbolic-functions', '-Wl,-z,relro'] Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' Appending LDFLAGS from environment: ['-Wl,-Bsymbolic-functions', '-Wl,-z,relro'] Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' C compiler for the host machine: cc (gcc 9.3.0 "cc (Ubuntu 9.3.0-7ubuntu1) 9.3.0") C linker for the host machine: cc ld.bfd 2.34 Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3' Appending LDFLAGS from environment: ['-Wl,-Bsymbolic-functions', '-Wl,-z,relro'] Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' C++ compiler for the host machine: c++ (gcc 9.3.0 "c++ (Ubuntu 9.3.0-7ubuntu1) 9.3.0") C++ linker for the host machine: c++ ld.bfd 2.34 Host machine cpu family: arm Host machine cpu: armv7l Compiler for C++ supports arguments -Wduplicated-cond: YES Compiler for C++ supports arguments -Wduplicated-branches: YES Compiler for C++ supports arguments -Wlogical-op: YES Compiler for C++ supports arguments -Wrestrict: YES Compiler for C++ supports arguments -Wuseless-cast: YES Compiler for C++ supports arguments -Wdouble-promotion: YES Compiler for C++ supports arguments -Wshadow: YES Compiler for C++ supports arguments -Wformat=1: YES Run-time dependency threads found: YES Run-time dependency Boost found: YES 1.71 Configuring PbcopperVersion.cpp using configuration Program tools/check-formatting found: YES (/<>/pbcopper-1.3.0+dfsg/tools/check-formatting) Configuring test_CLI.cpp using configuration Found pkg-config: /usr/bin/pkg-config (0.29.1) Run-time dependency GTest found: YES 1.10.0 Configuring PbcopperTestData.h using configuration Build targets in project: 4 Option buildtype is: plain [default: release] Found ninja-1.10.0 at /usr/bin/ninja dh_auto_build -a -O--builddirectory=build cd build && LC_ALL=C.UTF-8 ninja -j4 -v [1/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' -c ../src/align/AlignConfig.cpp [2/114] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 1.3.0 /<>/pbcopper-1.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' /<>/pbcopper-1.3.0+dfsg/src/utility/git describe --always '--dirty=*' [3/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp [4/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' -c ../src/align/ChainSeedsConfig.cpp [5/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -c ../src/align/BandedChainAlignment.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/align/BandedChainAlignment.h:8, from ../src/align/BandedChainAlignment.cpp:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/align/BandedChainAlignment.h:8, from ../src/align/BandedChainAlignment.cpp:3: /usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector PacBio::Align::Internal::BandedChainAlignerImpl::MergeSeeds(const std::vector&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [6/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -c ../src/align/AffineAlignment.cpp [7/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' -c ../src/align/LocalAlignment.cpp [8/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -c ../src/align/FindSeeds.cpp In file included from ../include/pbcopper/qgram/Index.h:77, from ../src/align/FindSeeds.cpp:5: ../include/pbcopper/qgram/internal/Index-inl.h: In member function ‘PacBio::QGram::IndexHits PacBio::QGram::internal::IndexImpl::Hits(const PacBio::QGram::internal::Shape&, size_t) const’: ../include/pbcopper/qgram/internal/Index-inl.h:120:37: warning: narrowing conversion of ‘(long long unsigned int)iter’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 120 | return IndexHits{&suffixArray_, iter, end, queryPos}; | ^~~~ ../include/pbcopper/qgram/internal/Index-inl.h:120:43: warning: narrowing conversion of ‘(long long unsigned int)end’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 120 | return IndexHits{&suffixArray_, iter, end, queryPos}; | ^~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/align/Seeds.h:10, from ../include/pbcopper/align/FindSeeds.h:11, from ../src/align/FindSeeds.cpp:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/align/Seeds.h:10, from ../include/pbcopper/align/FindSeeds.h:11, from ../src/align/FindSeeds.cpp:3: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void PacBio::QGram::internal::IndexImpl::Init()’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from ../include/pbcopper/qgram/Index.h:77, from ../src/align/FindSeeds.cpp:5: ../include/pbcopper/qgram/internal/Index-inl.h:106:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 106 | } | ^ [9/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' -c ../src/align/Seed.cpp [10/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -c ../src/align/LinearAlignment.cpp [11/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' -c ../src/align/Seeds.cpp [12/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -c ../src/align/ChainSeeds.cpp In file included from /usr/include/c++/9/vector:72, from /usr/include/c++/9/queue:61, from ../include/pbcopper/align/ChainSeeds.h:7, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::Align::SDPHit}; _Tp = PacBio::Align::SDPHit; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In function ‘void PacBio::Align::InitializeSeedsAndScores(const PacBio::Align::Seeds&, std::vector*, std::vector*)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/align/ChainSeeds.h:6, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = PacBio::Align::SDPHit; _Val = PacBio::Align::SDPHit; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/optional/optional.hpp:31, from /usr/include/boost/optional.hpp:15, from ../include/pbcopper/align/ChainSeeds.h:12, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1820 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/9/queue:62, from ../include/pbcopper/align/ChainSeeds.h:7, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = PacBio::Align::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/optional/optional.hpp:31, from /usr/include/boost/optional.hpp:15, from ../include/pbcopper/align/ChainSeeds.h:12, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/queue:62, from ../include/pbcopper/align/ChainSeeds.h:7, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = PacBio::Align::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/optional/optional.hpp:31, from /usr/include/boost/optional.hpp:15, from ../include/pbcopper/align/ChainSeeds.h:12, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h: In function ‘void PacBio::Align::ChainSeedsImpl(std::priority_queue, PacBio::Align::ChainHitCompare>*, std::vector >*, std::vector*, std::vector&, size_t, const PacBio::Align::ChainSeedsConfig&)’: /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1967 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1968 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1969 | __comp); | ~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1889 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/c++/9/queue:61, from ../include/pbcopper/align/ChainSeeds.h:7, from ../src/align/ChainSeeds.cpp:3: /usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector > PacBio::Align::ChainSeeds(const PacBio::Align::Seeds&, const PacBio::Align::ChainSeedsConfig&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [13/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -c ../src/align/SparseAlignment.cpp [14/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' -c ../src/align/cssw/ssw_cpp.cpp [15/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -c ../src/align/PairwiseAlignment.cpp [16/114] cc -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c11 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -MD -MQ 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -MF 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o.d' -o 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -c ../src/align/cssw/ssw.c [17/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from ../src/cli/CLI.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from ../src/cli/CLI.cpp:3: /usr/include/c++/9/bits/stl_map.h: In function ‘int PacBio::CLI::Run(const std::vector >&, const PacBio::CLI::Interface&, const ResultsHandler&)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [18/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../src/cli/Option.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../src/cli/Option.cpp:3: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘std::string PacBio::CLI::Option::TypeId() const’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [19/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/HelpPrinter.cpp:13: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/HelpPrinter.cpp:13: /usr/include/c++/9/bits/stl_map.h: In function ‘PacBio::CLI::{anonymous}::makeHelpText(const PacBio::CLI::Interface&)::, std::__cxx11::basic_string >&, size_t, std::ostringstream&)>’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In function ‘std::string PacBio::CLI::{anonymous}::makeHelpText(const PacBio::CLI::Interface&)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [20/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp [21/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp [22/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/Interface.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/Interface.cpp:3: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::JSON::Json PacBio::CLI::Interface::OptionChoices(const string&) const’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [23/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../src/cli/Results.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../src/cli/Results.cpp:3: /usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results::Result& PacBio::CLI::Results::operator[](const string&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘const Result& PacBio::CLI::Results::operator[](const string&) const’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterObservedOption(const string&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In function ‘typename std::_MakeUniq<_Tp>::__single_object std::make_unique(_Args&& ...) [with _Tp = PacBio::CLI::Results::ResultsPrivate; _Args = {PacBio::CLI::Interface, std::vector, std::allocator >, std::allocator, std::allocator > > >}]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterOptionValue(const string&, const Json&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterOptionValueString(const string&, const string&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘std::string PacBio::CLI::Results::EffectiveCommandLine() const’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::Results::Results(PacBio::CLI::Interface, std::vector >)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [24/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli/Interface.h:10, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/stl_map.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeDriverJson(const PacBio::CLI::Interface&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli/Interface.h:10, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeResourceTypesJson(const PacBio::CLI::ToolContract::Task&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/cli/Interface.h:10, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/stl_vector.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeInputTypesJson(const PacBio::CLI::Interface&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeOutputTypesJson(const PacBio::CLI::Interface&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli/Interface.h:10, from ../src/cli/toolcontract/JsonPrinter.cpp:8: /usr/include/c++/9/bits/vector.tcc: In static member function ‘static void PacBio::CLI::ToolContract::JsonPrinter::Print(const PacBio::CLI::Interface&, std::ostream&, int)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [25/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' -c ../src/cli2/CLI.cpp [26/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../src/cli/toolcontract/ResolvedToolContract.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli/Results.h:11, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../src/cli/toolcontract/ResolvedToolContract.cpp:3: /usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../src/cli/toolcontract/ResolvedToolContract.cpp:3: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli/Results.h:11, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../src/cli/toolcontract/ResolvedToolContract.cpp:3: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../src/cli/toolcontract/ResolvedToolContract.cpp:3: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(nlohmann::detail::json_sax_dom_callback_parser::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [27/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' -c ../src/cli2/HelpMetrics.cpp [28/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' -c ../src/cli2/CommandLineParser.cpp [29/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' -c ../src/cli2/Interface.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/Interface.h:12, from ../src/cli2/Interface.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::CLI_v2::internal::OptionData}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::CLI_v2::Interface& PacBio::CLI_v2::Interface::AddOption(const PacBio::CLI_v2::Option&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::internal::OptionData&}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/cli2/Interface.h:12, from ../src/cli2/Interface.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector PacBio::CLI_v2::Interface::Options() const’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [30/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' -c ../src/cli2/MultiToolInterfaceHelpPrinter.cpp [31/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' -c ../src/cli2/InterfaceHelpPrinter.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/Interface.h:12, from ../include/pbcopper/cli2/internal/InterfaceHelpPrinter.h:14, from ../src/cli2/InterfaceHelpPrinter.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::internal::OptionData&}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/cli2/Interface.h:12, from ../include/pbcopper/cli2/internal/InterfaceHelpPrinter.h:14, from ../src/cli2/InterfaceHelpPrinter.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string PacBio::CLI_v2::internal::InterfaceHelpPrinter::Options()’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [32/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' -c ../src/cli2/MultiToolInterface.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/MultiToolInterface.h:11, from ../src/cli2/MultiToolInterface.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::Tool&}; _Tp = PacBio::CLI_v2::Tool; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::CLI_v2::MultiToolInterface& PacBio::CLI_v2::MultiToolInterface::AddTool(const PacBio::CLI_v2::Tool&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [33/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' -c ../src/cli2/Option.cpp [34/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' -c ../src/cli2/OptionValue.cpp [35/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' -c ../src/cli2/Result.cpp [36/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' -c ../src/cli2/VersionPrinter.cpp [37/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' -c ../src/cli2/Results.cpp [38/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' -c ../src/data/Accuracy.cpp [39/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp [40/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp [41/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' -c ../src/data/Frames.cpp [42/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' -c ../src/data/Clipping.cpp [43/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' -c ../src/cli2/PositionalArgumentTranslator.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9, from ../src/cli2/PositionalArgumentTranslator.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/PositionalArgumentTranslator.cpp:5: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9, from ../src/cli2/PositionalArgumentTranslator.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/PositionalArgumentTranslator.cpp:5: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9, from ../src/cli2/PositionalArgumentTranslator.cpp:1: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/PositionalArgumentTranslator.cpp:5: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(nlohmann::detail::json_sax_dom_callback_parser::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [44/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' -c ../src/cli2/OptionTranslator.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {boost::variant, std::allocator > >}; _Tp = boost::variant, std::allocator > >; _Alloc = std::allocator, std::allocator > > >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::CLI_v2::internal::OptionData}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/optional/optional.hpp:31, from /usr/include/boost/optional.hpp:15, from ../include/pbcopper/cli2/Option.h:10, from ../include/pbcopper/cli2/internal/OptionTranslator.h:11, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/stl_algo.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val, std::allocator > > >]’: /usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 112 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~ /usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 /usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 171 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/stl_vector.h: In member function ‘IteratorType nlohmann::basic_json::erase(IteratorType) [with IteratorType = nlohmann::detail::iter_impl >; typename std::enable_if<(std::is_same > >::value || std::is_same > >::value), int>::type = 0; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 1428 | { return _M_erase(begin() + (__position - cbegin())); } | ^ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string, std::allocator >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/OptionTranslator.cpp:10: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/OptionTranslator.cpp:10: /usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser >; BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/cli2/OptionTranslator.cpp:10: /usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser::key(nlohmann::detail::json_sax_dom_callback_parser::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In static member function ‘static PacBio::CLI_v2::internal::OptionData PacBio::CLI_v2::internal::OptionTranslator::Translate(const PacBio::CLI_v2::Option&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/algorithm:62, from /usr/include/boost/core/swap.hpp:27, from /usr/include/boost/optional/optional.hpp:31, from /usr/include/boost/optional.hpp:15, from ../include/pbcopper/cli2/Option.h:10, from ../include/pbcopper/cli2/internal/OptionTranslator.h:11, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 161 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 162 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/cli2/internal/OptionTranslator.h:9, from ../src/cli2/OptionTranslator.cpp:2: /usr/include/c++/9/bits/vector.tcc: In static member function ‘static std::vector PacBio::CLI_v2::internal::OptionTranslator::Translate(const std::vector&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [45/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp [46/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' -c ../src/data/QualityValue.cpp [47/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' -c ../src/data/GenomicInterval.cpp [48/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' -c ../src/data/MappedRead.cpp [49/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' -c ../src/data/Interval.cpp [50/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' -c ../src/data/QualityValues.cpp [51/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' -c ../src/data/ReadId.cpp [52/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp [53/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Read.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' -c ../src/data/Read.cpp [54/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' -c ../src/data/SNR.cpp [55/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' -c ../src/logging/LogConfig.cpp [56/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' -c ../src/logging/LogLevel.cpp [57/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' -c ../src/logging/LogMessage.cpp [58/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp [59/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' -c ../src/utility/Deleters.cpp [60/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' -c ../src/utility/Stopwatch.cpp [61/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' -c ../src/utility/StringUtils.cpp [62/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' -c ../src/reports/TaskReport.cpp [63/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp [64/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' -c ../src/reports/Report.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/reports/Report.h:13, from ../src/reports/Report.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {boost::variant, std::allocator > >}; _Tp = boost::variant, std::allocator > >; _Alloc = std::allocator, std::allocator > > >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::Reports::Column& PacBio::Reports::Column::AddValue(PacBio::Reports::ReportValue)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::Reports::Attribute}; _Tp = PacBio::Reports::Attribute; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::Reports::Report& PacBio::Reports::Report::AddAttribute(PacBio::Reports::Attribute)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [65/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' -c ../src/reports/ReportPrinter.cpp In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/json/internal/json.hpp:49, from ../include/pbcopper/json/JSON.h:27, from ../src/reports/ReportPrinter.cpp:5: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/reports/ReportPrinter.cpp:5: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../src/reports/ReportPrinter.cpp:5: /usr/include/c++/9/bits/stl_map.h: In static member function ‘static void PacBio::Reports::internal::ReportPrinter::PrintSummary(std::ostream&, const PacBio::Reports::Report&)’: /usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/json/internal/json.hpp:49, from ../include/pbcopper/json/JSON.h:27, from ../src/reports/ReportPrinter.cpp:5: /usr/include/c++/9/bits/vector.tcc: In function ‘Json {anonymous}::ToJson(const PacBio::Reports::Table&, const string&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In static member function ‘static void PacBio::Reports::internal::ReportPrinter::Print(std::ostream&, const PacBio::Reports::Report&, const string&)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ [66/114] c++ -o src/libpbcopper.so.1.3.0 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.1.3.0 -Wl,--end-group -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread [67/114] /usr/bin/meson --internal symbolextractor src/libpbcopper.so.1.3.0 'src/25a6634@@pbcopper@sha/libpbcopper.so.1.3.0.symbols' [68/114] c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from ../examples/cli_demo/main.cpp:2: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from ../examples/cli_demo/main.cpp:2: /usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [69/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' -c ../tests/src/align/test_BandedChainAlign.cpp [70/114] c++ -o examples/cli_demo/cli_demo 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -Wl,--as-needed -Wl,--no-undefined -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--start-group src/libpbcopper.so.1.3.0 -Wl,--end-group -pthread '-Wl,-rpath,$ORIGIN/../../src' -Wl,-rpath-link,/<>/pbcopper-1.3.0+dfsg/build/src [71/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' -c ../tests/src/align/test_Seeds.cpp [72/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' -c ../tests/src/align/test_Alignment.cpp [73/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' -c ../tests/src/cli/test_VersionPrinter.cpp [74/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' -c ../tests/src/cli/test_Interface.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../tests/src/cli/test_Interface.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../tests/src/cli/test_Interface.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [75/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' -c tests/test_CLI.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from tests/test_CLI.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/CLI.h:13, from tests/test_CLI.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [76/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' -c ../tests/src/cli/test_HelpPrinter.cpp In file included from /usr/include/c++/9/map:60, from /usr/include/gtest/internal/gtest-internal.h:58, from /usr/include/gtest/gtest.h:62, from ../tests/src/cli/test_HelpPrinter.cpp:5: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from /usr/include/gtest/internal/gtest-internal.h:58, from /usr/include/gtest/gtest.h:62, from ../tests/src/cli/test_HelpPrinter.cpp:5: /usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [77/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' -c ../tests/src/cli/test_Results.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../tests/src/cli/test_Results.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../tests/src/cli/test_Results.cpp:1: /usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [78/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' -c ../tests/src/cli/test_Option.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../tests/src/cli/test_Option.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../tests/src/cli/test_Option.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [79/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' -c ../tests/src/cli/test_ResolvedToolContract.cpp In file included from /usr/include/c++/9/map:60, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../tests/src/cli/test_ResolvedToolContract.cpp:1: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from ../include/pbcopper/json/internal/json.hpp:64, from ../include/pbcopper/json/JSON.h:27, from ../include/pbcopper/cli/Option.h:14, from ../include/pbcopper/cli/Interface.h:12, from ../include/pbcopper/cli/Results.h:13, from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10, from ../tests/src/cli/test_ResolvedToolContract.cpp:1: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [80/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' -c ../tests/src/reports/test_Report.cpp [81/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' -c ../tests/src/cli/test_ToolContractJsonPrinter.cpp In file included from /usr/include/c++/9/map:60, from /usr/include/gtest/internal/gtest-internal.h:58, from /usr/include/gtest/gtest.h:62, from ../tests/src/cli/test_ToolContractJsonPrinter.cpp:3: /usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/map:61, from /usr/include/gtest/internal/gtest-internal.h:58, from /usr/include/gtest/gtest.h:62, from ../tests/src/cli/test_ToolContractJsonPrinter.cpp:3: /usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [82/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' -c ../tests/src/qgram/test_Index.cpp In file included from ../include/pbcopper/qgram/Index.h:77, from ../tests/src/qgram/test_Index.cpp:1: ../include/pbcopper/qgram/internal/Index-inl.h: In member function ‘PacBio::QGram::IndexHits PacBio::QGram::internal::IndexImpl::Hits(const PacBio::QGram::internal::Shape&, size_t) const’: ../include/pbcopper/qgram/internal/Index-inl.h:120:37: warning: narrowing conversion of ‘(long long unsigned int)iter’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 120 | return IndexHits{&suffixArray_, iter, end, queryPos}; | ^~~~ ../include/pbcopper/qgram/internal/Index-inl.h:120:43: warning: narrowing conversion of ‘(long long unsigned int)end’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 120 | return IndexHits{&suffixArray_, iter, end, queryPos}; | ^~~ In file included from /usr/include/c++/9/vector:72, from ../include/pbcopper/qgram/Index.h:11, from ../tests/src/qgram/test_Index.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from ../include/pbcopper/qgram/Index.h:11, from ../tests/src/qgram/test_Index.cpp:1: /usr/include/c++/9/bits/stl_vector.h: In member function ‘void PacBio::QGram::internal::IndexImpl::Init()’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ In file included from ../include/pbcopper/qgram/Index.h:77, from ../tests/src/qgram/test_Index.cpp:1: ../include/pbcopper/qgram/internal/Index-inl.h:106:1: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 106 | } | ^ [83/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' -c ../tests/src/cli2/test_CLI.cpp [84/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp [85/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' -c ../tests/src/cli2/test_CommandLineParser.cpp [86/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp [87/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' -c ../tests/src/cli2/test_OptionValue.cpp [88/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread 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-Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' -c ../tests/src/data/test_Accuracy.cpp [91/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' -c ../tests/src/cli2/test_VersionPrinter.cpp [92/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o.d' -o 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-Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' -c ../tests/src/cli2/test_Results.cpp [95/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' -c ../tests/src/data/test_GenomicInterval.cpp [96/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' -c ../tests/src/data/test_Interval.cpp [97/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' -c ../tests/src/data/test_MovieName.cpp [98/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' -c ../tests/src/data/test_QualityValues.cpp [99/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' -c ../tests/src/data/test_MappedRead.cpp [100/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' -c ../tests/src/data/test_ReadName.cpp [101/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' -c ../tests/src/data/test_RSMovieName.cpp [102/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' 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-I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' -c ../tests/src/data/test_RSReadName.cpp [105/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' -c ../tests/src/data/test_Read.cpp [106/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' -c ../tests/src/parallel/test_FireAndForget.cpp [107/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' -c ../tests/src/utility/test_FileUtils.cpp [108/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' -c ../tests/src/parallel/test_WorkQueue.cpp [109/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' -c ../tests/src/utility/test_MinMax.cpp [110/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp [111/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -c ../tests/src/utility/test_SystemInfo.cpp In file included from /usr/include/boost/detail/endian.hpp:9, from ../include/pbcopper/utility/internal/SystemInfo-inl.h:8, from ../include/pbcopper/utility/SystemInfo.h:29, from ../tests/src/utility/test_SystemInfo.cpp:1: /usr/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead 11 | #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") | ^ [112/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' -c ../tests/src/utility/test_Stopwatch.cpp [113/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' -c ../tests/src/utility/test_StringUtils.cpp [114/114] c++ -o tests/pbcopper_test 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionTranslator.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_PositionalArgumentTranslator.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Cigar.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_logging_test_Logging.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -Wl,--as-needed -Wl,--no-undefined -g -O2 -fdebug-prefix-map=/<>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--start-group src/libpbcopper.so.1.3.0 /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/libgtest_main.a -lpthread /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/libgtest.a -Wl,--end-group -pthread '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/<>/pbcopper-1.3.0+dfsg/build/src debian/rules override_dh_auto_test make[1]: Entering directory '/<>/pbcopper-1.3.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs 1/2 pbcopper formatting check OK 0.04 s 2/2 pbcopper gtest unittests OK 3.06 s Ok: 2 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /<>/pbcopper-1.3.0+dfsg/build/meson-logs/testlog.txt make[1]: Leaving directory '/<>/pbcopper-1.3.0+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --builddirectory=build dh_testroot -a -O--builddirectory=build dh_prep -a -O--builddirectory=build dh_auto_install -a -O--builddirectory=build cd build && DESTDIR=/<>/pbcopper-1.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install [1/7] Generating PbcopperGitHash.cpp with a custom command. [1/2] Installing files. Installing src/libpbcopper.so.1.3.0 to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/Seed.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/Seeds.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/CLI.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/HelpPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Interface.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Option.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/OptionFlags.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Parser.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/PositionalArg.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Results.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/SingleDashMode.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/VersionPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/internal/Option-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Config.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Driver.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/InputFileType.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/JsonPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/OutputFileType.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/ResolvedToolContract.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/ResourceType.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Task.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/TaskType.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/Driver-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/InputFileType-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/OutputFileType-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/Task-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/CLI.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Interface.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Option.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Result.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Results.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Tool.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2 Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Accuracy.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/CCSTag.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Cigar.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Clipping.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Frames.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Interval.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/MappedRead.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/MovieName.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Orientation.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Position.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/QualityValue.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/QualityValues.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Read.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/ReadId.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/ReadName.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/RSReadName.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/SNR.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Strand.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Zmw.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/json/JSON.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/json Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/json/internal/json.hpp to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/json/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/Logging.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogField.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/reports/Report.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/Index.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Deleters.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/MinMax.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SystemInfo.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Unused.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /<>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/SystemInfo-inl.h to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal Installing /<>/pbcopper-1.3.0+dfsg/build/meson-private/pbcopper.pc to /<>/pbcopper-1.3.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig dh_install -a -O--builddirectory=build dh_installdocs -a -O--builddirectory=build dh_installchangelogs -a -O--builddirectory=build dh_installinit -a -O--builddirectory=build dh_installsystemduser -a -O--builddirectory=build dh_perl -a -O--builddirectory=build dh_link -a -O--builddirectory=build dh_strip_nondeterminism -a -O--builddirectory=build dh_compress -a -O--builddirectory=build dh_fixperms -a -O--builddirectory=build dh_missing -a -O--builddirectory=build dh_dwz -a -O--builddirectory=build dh_strip -a -O--builddirectory=build dh_makeshlibs -a -O--builddirectory=build dh_shlibdeps -a -O--builddirectory=build dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpbcopper1.3.0/usr/lib/arm-linux-gnueabihf/libpbcopper.so.1.3.0 found in none of the libraries dh_installdeb -a -O--builddirectory=build dh_gencontrol -a -O--builddirectory=build dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--builddirectory=build dh_builddeb -a -O--builddirectory=build INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libpbcopper1.3.0 (in debian/libpbcopper1.3.0); do_strip: , oemstrip: pkgstriptranslations: processing libpbcopper-dev (in debian/libpbcopper-dev); do_strip: , oemstrip: pkgstriptranslations: processing libpbcopper1.3.0-dbgsym (in debian/.debhelper/libpbcopper1.3.0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libpbcopper1.3.0/DEBIAN/control, package libpbcopper1.3.0, directory debian/libpbcopper1.3.0 pkgstripfiles: processing control file: debian/libpbcopper-dev/DEBIAN/control, package libpbcopper-dev, directory debian/libpbcopper-dev INFO: pkgstripfiles: waiting for lock (libpbcopper-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpbcopper1.3.0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpbcopper1.3.0' in '../libpbcopper1.3.0_1.3.0+dfsg-3build1_armhf.deb'. Searching for duplicated docs in dependency libpbcopper1.3.0... symlinking changelog.Debian.gz in libpbcopper-dev to file in libpbcopper1.3.0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libpbcopper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_1.3.0+dfsg-3build1_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libpbcopper1.3.0/dbgsym-root/DEBIAN/control, package libpbcopper1.3.0-dbgsym, directory debian/.debhelper/libpbcopper1.3.0/dbgsym-root dpkg-deb: building package 'libpbcopper1.3.0-dbgsym' in 'debian/.debhelper/scratch-space/build-libpbcopper1.3.0/libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3build1_armhf.deb'. Renaming libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3build1_armhf.deb to libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3build1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../pbcopper_1.3.0+dfsg-3build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200323-1026 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pbcopper_1.3.0+dfsg-3build1_armhf.changes: ------------------------------------------ Format: 1.8 Date: Mon, 23 Mar 2020 07:22:36 +0100 Source: pbcopper Binary: libpbcopper-dev libpbcopper1.3.0 Architecture: armhf Version: 1.3.0+dfsg-3build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libpbcopper-dev - data structures, algorithms, and utilities for C++ applications - libpbcopper1.3.0 - data structures, algorithms, and utilities for C++ applications Changes: pbcopper (1.3.0+dfsg-3build1) focal; urgency=medium . * No-change rebuild for libgcc-s1 package name change. 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It is developed for use by applications of the Pacific Biosciences SMRT Analysis suite. . 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2020-03-23 06:22 ./usr/share/doc/libpbcopper-dev/ lrwxrwxrwx root/root 0 2020-03-23 06:22 ./usr/share/doc/libpbcopper-dev/changelog.Debian.gz -> ../libpbcopper1.3.0/changelog.Debian.gz -rw-r--r-- root/root 3206 2020-01-29 08:16 ./usr/share/doc/libpbcopper-dev/copyright libpbcopper1.3.0_1.3.0+dfsg-3build1_armhf.deb --------------------------------------------- new debian package, version 2.0. size 290808 bytes: control archive=956 bytes. 697 bytes, 17 lines control 318 bytes, 4 lines md5sums 51 bytes, 1 lines shlibs 72 bytes, 2 lines triggers Package: libpbcopper1.3.0 Source: pbcopper Version: 1.3.0+dfsg-3build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 677 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 9) Section: libs Priority: optional Homepage: https://github.com/PacificBiosciences/pbcopper Description: data structures, algorithms, and utilities for C++ applications pbcopper provides general tools for C++ applications. It is developed for use by applications of the Pacific Biosciences SMRT Analysis suite. . This package contains the dynamic library drwxr-xr-x root/root 0 2020-03-23 06:22 ./ drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/ drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/lib/ drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 674420 2020-03-23 06:22 ./usr/lib/arm-linux-gnueabihf/libpbcopper.so.1.3.0 drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/share/ drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-23 06:22 ./usr/share/doc/libpbcopper1.3.0/ -rw-r--r-- root/root 3004 2019-08-23 15:47 ./usr/share/doc/libpbcopper1.3.0/README.md -rw-r--r-- root/root 1012 2020-03-23 06:22 ./usr/share/doc/libpbcopper1.3.0/changelog.Debian.gz -rw-r--r-- root/root 3206 2020-01-29 08:16 ./usr/share/doc/libpbcopper1.3.0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 321160 Build-Time: 410 Distribution: focal-proposed Host Architecture: armhf Install-Time: 37 Job: pbcopper_1.3.0+dfsg-3build1.dsc Machine Architecture: arm64 Package: pbcopper Package-Time: 448 Source-Version: 1.3.0+dfsg-3build1 Space: 321160 Status: successful Version: 1.3.0+dfsg-3build1 -------------------------------------------------------------------------------- Finished at 20200323-1026 Build needed 00:07:28, 321160k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18879999 Scanning for processes to kill in build PACKAGEBUILD-18879999