pbdagcon 0.3+git20161121.0000000+ds-1.1build1 source package in Ubuntu


pbdagcon (0.3+git20161121.0000000+ds-1.1build1) eoan; urgency=medium

  * Rebuild against new libpbbam0.23.0.

 -- Gianfranco Costamagna <email address hidden>  Tue, 10 Sep 2019 15:28:24 +0200

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Uploaded by:
Gianfranco Costamagna on 2019-09-10
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Debian Med
Medium Urgency

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Eoan release on 2019-09-10 universe misc


File Size SHA-256 Checksum
pbdagcon_0.3+git20161121.0000000+ds.orig.tar.gz 250.4 KiB 897b6210e2abf6d15ba7ad9718aa21527bcbd7540e307882e1688abddd8eca17
pbdagcon_0.3+git20161121.0000000+ds-1.1build1.debian.tar.xz 5.9 KiB d55999961b7ac58dd2db753037ea4da8f3a3a79536462b3b497df40f231bee30
pbdagcon_0.3+git20161121.0000000+ds-1.1build1.dsc 2.2 KiB 7790bf73c0da83e757adb38fe6d89b0268eb4f3cf746a212318b1b802d746fe5

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pbdagcon: sequence consensus using directed acyclic graphs

 pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus)
 which is a sequence consensus algorithm based on using directed acyclic
 graphs to encode multiple sequence alignment.
 It uses the alignment information from blasr to align sequence reads to a
 "backbone" sequence. Based on the underlying alignment directed acyclic graph
 (DAG), it will be able to use the new information from the reads to find the
 discrepancies between the reads and the "backbone" sequences. A dynamic
 programming process is then applied to the DAG to find the optimum sequence
 of bases as the consensus. The new consensus can be used as a new backbone
 sequence to iteratively improve the consensus quality.
 While the code is developed for processing PacBio(TM) raw sequence data,
 the algorithm can be used for general consensus purpose. Currently, it only
 takes FASTA input. For shorter read sequences, one might need to adjust the
 blasr alignment parameters to get the alignment string properly.
 The code and the underlying graphical data structure have been used for some
 algorithm development prototyping including phasing reads and pre-assembly.

pbdagcon-dbgsym: debug symbols for pbdagcon