pbgenomicconsensus 2.3.2-1 source package in Ubuntu

Changelog

pbgenomicconsensus (2.3.2-1) unstable; urgency=medium

  * Team upload

  [ Afif Elghraoui ]
  * New upstream release snapshot
    (git 0d51d50, 2018-03-07)
  * Add README.source explaining how to select upstream snapshots

  [ Andreas Tille ]
  * debhelper 12
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0
  * Build-Depends: python-pytest
  * Build-Depends: python-consensuscore2 (to be uploaded, see ITP #847310)
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test
  * Several changes to make test suite work
  * Pre-create manpages (seems there is no point in calling pandoc inside
    build process.)
  * Remove unused lintian-override

 -- Andreas Tille <email address hidden>  Fri, 11 Jan 2019 21:19:28 +0100

Upload details

Uploaded by:
Debian Med on 2019-01-12
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Disco: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
pbgenomicconsensus_2.3.2-1.dsc 2.4 KiB ca30aecb652286f42765518b04c54183c98cbe77c5101cdbbd9ed589c028e367
pbgenomicconsensus_2.3.2.orig.tar.gz 8.4 MiB be9b99bdfe58dc85e18897f7301d01fd53db271e3226db40046c99cf1eb11218
pbgenomicconsensus_2.3.2-1.debian.tar.xz 18.2 KiB 92c3768b02dad79defcd686cadb15d6c50083738b3814801dadfb29510b246f7

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Binary packages built by this source

pbgenomicconsensus: Pacific Biosciences variant and consensus caller

 The GenomicConsensus package provides Quiver, Pacific Biosciences'
 flagship consensus and variant caller. Quiver is an algorithm that finds
 the maximum likelihood template sequence given PacBio reads of the template.
 These reads are modeled using a conditional random field approach that
 prescribes a probability to a read given a template sequence. In addition to
 the base sequence of each read, Quiver uses several additional quality value
 covariates that the base caller provides.
 .
 This package is part of the SMRTAnalysis suite

python-pbgenomicconsensus: Pacific Biosciences variant and consensus caller (Python 2)

 The GenomicConsensus package provides Quiver, Pacific Biosciences'
 flagship consensus and variant caller. Quiver is an algorithm that finds
 the maximum likelihood template sequence given PacBio reads of the template.
 These reads are modeled using a conditional random field approach that
 prescribes a probability to a read given a template sequence. In addition to
 the base sequence of each read, Quiver uses several additional quality value
 covariates that the base caller provides.
 .
 This package is part of the SMRTAnalysis suite and provides the Python 2
 backend library.