RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux adare 3.2.0-53-powerpc64-smp #81-Ubuntu SMP Thu Aug 22 21:17:14 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 23 Oct 22:49:07 ntpdate[7754]: adjust time server 10.211.37.1 offset -0.000104 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5141556', '/home/buildd/filecache-default/b94b394cc2bdc71c8f0daf6b0130bdf15bffc4f2'] Unpacking chroot for build PACKAGEBUILD-5141556 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5141556'] Mounting chroot for build PACKAGEBUILD-5141556 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5141556', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5141556 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5141556', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5141556 Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://archive-team.internal trusty Release [744 B] Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [49.6 kB] Get:7 http://archive-team.internal trusty/main powerpc Packages Get:8 http://ftpmaster.internal trusty-security Release [49.6 kB] Get:9 http://ftpmaster.internal trusty-updates Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Get:10 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:11 http://ftpmaster.internal trusty/main powerpc Packages [1222 kB] Get:12 http://ftpmaster.internal trusty/universe powerpc Packages [5558 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [722 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [3962 kB] Get:15 http://ftpmaster.internal trusty-security/main powerpc Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe powerpc Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe powerpc Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main powerpc Packages [84.6 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe powerpc Packages [300 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [52.4 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [344 kB] Fetched 12.4 MB in 14s (838 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs libdrm2 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libsqlite3-0 perl perl-base perl-modules tar 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After this operation, 2607 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! perl perl-base perl-modules tar libsqlite3-0 libdrm2 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 busybox-initramfs Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl powerpc 5.18.1-4 [4072 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-base powerpc 5.18.1-4 [1584 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-modules all 5.18.1-4 [3926 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main tar powerpc 1.27-1 [235 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libsqlite3-0 powerpc 3.8.0.2-1ubuntu1 [388 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 powerpc 2.4.46-3ubuntu1 [25.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 powerpc 1.11.3+dfsg-3ubuntu1 [108 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 powerpc 1.11.3+dfsg-3ubuntu1 [131 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 powerpc 1.11.3+dfsg-3ubuntu1 [356 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 powerpc 1.11.3+dfsg-3ubuntu1 [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libldap-2.4-2 powerpc 2.4.31-1+nmu2ubuntu4 [178 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs powerpc 1:1.20.0-9ubuntu2 [203 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.2 MB in 0s (11.5 MB/s) (Reading database ... 11994 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4_powerpc.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4_powerpc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4) ... (Reading database ... 11896 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace tar 1.26+dfsg-8 (using .../tar_1.27-1_powerpc.deb) ... Unpacking replacement tar ... Setting up tar (1.27-1) ... (Reading database ... 11934 files and directories currently installed.) Preparing to replace libsqlite3-0:powerpc 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.0.2-1ubuntu1_powerpc.deb) ... Unpacking replacement libsqlite3-0:powerpc ... Preparing to replace libdrm2:powerpc 2.4.46-3 (using .../libdrm2_2.4.46-3ubuntu1_powerpc.deb) ... Unpacking replacement libdrm2:powerpc ... Preparing to replace libk5crypto3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libk5crypto3:powerpc ... Preparing to replace libgssapi-krb5-2:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libgssapi-krb5-2:powerpc ... Preparing to replace libkrb5-3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libkrb5-3:powerpc ... Preparing to replace libkrb5support0:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libkrb5support0:powerpc ... Preparing to replace libldap-2.4-2:powerpc 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu4_powerpc.deb) ... Unpacking replacement libldap-2.4-2:powerpc ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_powerpc.deb) ... Unpacking replacement busybox-initramfs ... Setting up libsqlite3-0:powerpc (3.8.0.2-1ubuntu1) ... Setting up libdrm2:powerpc (2.4.46-3ubuntu1) ... Setting up libkrb5support0:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libk5crypto3:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libkrb5-3:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libldap-2.4-2:powerpc (2.4.31-1+nmu2ubuntu4) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up perl-modules (5.18.1-4) ... Setting up perl (5.18.1-4) ... Processing triggers for libc-bin ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5141556', 'powerpc', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'phyml_20120412-2.dsc'] Initiating build PACKAGEBUILD-5141556 with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-53-powerpc64-smp #81-Ubuntu SMP Thu Aug 22 21:17:14 UTC 2013 ppc Automatic build of phyml_20120412-2 on adare by sbuild/powerpc 1.170.5 Build started at 20131023-2250 ****************************************************************************** phyml_20120412-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf Checking for already installed source dependencies... debhelper: missing autotools-dev: missing dh-autoreconf: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev dh-autoreconf Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof autoconf automake autopoint bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libtool-doc automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-apparmor dh-autoreconf dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 13.6 MB of archives. After this operation, 45.9 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libsigsegv2 libunistring0 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base m4 autoconf autotools-dev automake autopoint gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libtool dh-autoreconf Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 powerpc 2.1.0-4 [132 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 powerpc 3.0.13-4 [20.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 powerpc 5.11-2ubuntu4 [170 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal powerpc 3.3.2-7ubuntu3 [621 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib powerpc 3.3.2-7ubuntu3 [2738 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal powerpc 3.3.2-7ubuntu3 [1868 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 powerpc 0.18.3.1-1ubuntu1 [7346 B] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 powerpc 2.38.1-1 [882 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 powerpc 1.2.4-1 [26.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu2 [645 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main groff-base powerpc 1.22.2-3 [705 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main man-db powerpc 2.6.5-2 [686 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 powerpc 0.6.8-2 [70.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libsigsegv2 powerpc 2.10-2 [14.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 powerpc 0.9.3-5ubuntu1 [414 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 powerpc 3.3.2-7ubuntu3 [128 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal powerpc 3.3.2-14ubuntu1 [27.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib powerpc 3.3.2-14ubuntu1 [8150 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main python3 powerpc 3.3.2-14ubuntu1 [9172 B] Get:22 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1 [62.1 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main file powerpc 5.11-2ubuntu4 [18.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base powerpc 0.18.3.1-1ubuntu1 [64.6 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main m4 powerpc 1.4.17-1 [197 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main autoconf all 2.69-1.1 [573 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main automake all 1:1.13.3-1.1ubuntu2 [573 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main autopoint all 0.18.3.1-1ubuntu1 [371 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main gettext powerpc 0.18.3.1-1ubuntu1 [1014 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty-proposed/main apparmor-easyprof all 2.8.0-0ubuntu32 [23.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-apparmor all 2.8.0-0ubuntu32 [7830 B] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libtool powerpc 2.4.2-1.3ubuntu1 [306 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main dh-autoreconf all 9 [15.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.6 MB in 2s (6268 kB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11934 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4_powerpc.deb) ... Selecting previously unselected package libffi6:powerpc. Unpacking libffi6:powerpc (from .../libffi6_3.0.13-4_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.2-7ubuntu3_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. Unpacking libpython3.3-stdlib:powerpc (from .../libpython3.3-stdlib_3.3.2-7ubuntu3_powerpc.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-7ubuntu3_powerpc.deb) ... Selecting previously unselected package libasprintf0c2:powerpc. Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libglib2.0-0:powerpc. Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.38.1-1_powerpc.deb) ... Selecting previously unselected package libpipeline1:powerpc. Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.4-1_powerpc.deb) ... Selecting previously unselected package libxml2:powerpc. Unpacking libxml2:powerpc (from .../libxml2_2.9.1+dfsg1-3ubuntu2_powerpc.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_powerpc.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_powerpc.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_powerpc.deb) ... Selecting previously unselected package libcroco3:powerpc. Unpacking libcroco3:powerpc (from .../libcroco3_0.6.8-2_powerpc.deb) ... Selecting previously unselected package libsigsegv2:powerpc. Unpacking libsigsegv2:powerpc (from .../libsigsegv2_2.10-2_powerpc.deb) ... Selecting previously unselected package libunistring0:powerpc. Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5ubuntu1_powerpc.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.2-7ubuntu3_powerpc.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-14ubuntu1_powerpc.deb) ... Selecting previously unselected package libpython3-stdlib:powerpc. Unpacking libpython3-stdlib:powerpc (from .../libpython3-stdlib_3.3.2-14ubuntu1_powerpc.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-14ubuntu1_powerpc.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131021-1_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package m4. Unpacking m4 (from .../m4_1.4.17-1_powerpc.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.69-1.1_all.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20130810.1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.13.3-1.1ubuntu2_all.deb) ... Selecting previously unselected package autopoint. Unpacking autopoint (from .../autopoint_0.18.3.1-1ubuntu1_all.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package apparmor-easyprof. Unpacking apparmor-easyprof (from .../apparmor-easyprof_2.8.0-0ubuntu32_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.8.0-0ubuntu32_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130921ubuntu1_all.deb) ... Selecting previously unselected package libtool. Unpacking libtool (from .../libtool_2.4.2-1.3ubuntu1_powerpc.deb) ... Selecting previously unselected package dh-autoreconf. Unpacking dh-autoreconf (from .../dh-autoreconf_9_all.deb) ... Setting up libexpat1:powerpc (2.1.0-4) ... Setting up libffi6:powerpc (3.0.13-4) ... Setting up libmagic1:powerpc (5.11-2ubuntu4) ... Setting up libpython3.3-minimal:powerpc (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:powerpc (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:powerpc (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:powerpc (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.2.4-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2) ... Setting up libsigsegv2:powerpc (2.10-2) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu1) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:powerpc (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up m4 (1.4.17-1) ... Setting up autoconf (2.69-1.1) ... Setting up autotools-dev (20130810.1) ... Setting up automake (1:1.13.3-1.1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.13 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.18.3.1-1ubuntu1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libtool (2.4.2-1.3ubuntu1) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131021-1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu32) ... Setting up dh-apparmor (2.8.0-0ubuntu32) ... Setting up debhelper (9.20130921ubuntu1) ... Setting up dh-autoreconf (9) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-1ubuntu2 g++-4.8_4.8.2-1ubuntu2 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-1ubuntu2 libstdc++6_4.8.2-1ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Mon Aug 5 08:01:19 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./phyml_20120412-2.dsc dpkg-source: info: extracting phyml in phyml-20120412 dpkg-source: info: unpacking phyml_20120412.orig.tar.gz dpkg-source: info: unpacking phyml_20120412-2.debian.tar.gz dpkg-source: info: applying sse_only_if_supported.patch dpkg-buildpackage: source package phyml dpkg-buildpackage: source version 2:20120412-2 dpkg-source --before-build phyml-20120412 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/phyml-20120412' dh_auto_clean # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin make[1]: Leaving directory `/build/buildd/phyml-20120412' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_testdir -a debian/rules override_dh_autoreconf make[1]: Entering directory `/build/buildd/phyml-20120412' dh_autoreconf --as-needed make[1]: Leaving directory `/build/buildd/phyml-20120412' debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/phyml-20120412' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable dh_auto_configure configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking dependency style of gcc... (cached) none checking for log in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes configure: "Do not use MSSE = because not available on arch powerpc-unknown-linux-gnu" checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory `/build/buildd/phyml-20120412' make all-recursive make[3]: Entering directory `/build/buildd/phyml-20120412' Making all in src make[4]: Entering directory `/build/buildd/phyml-20120412/src' :: Building [phyml]. Version 20131023 :: gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c main.c main.c: In function 'main': main.c:43:36: warning: variable 'tree_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ main.c:43:19: warning: variable 'most_likely_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ main.c:40:11: warning: variable 'mat' set but not used [-Wunused-but-set-variable] matrix *mat; ^ main.c:39:16: warning: variable 'tree_line_number' set but not used [-Wunused-but-set-variable] int num_tree,tree_line_number,num_rand_tree; ^ main.c:38:7: warning: variable 'n_otu' set but not used [-Wunused-but-set-variable] int n_otu, num_data_set; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c utilities.c utilities.c: In function 'Read_Branch_Label': utilities.c:294:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i,posp,posl; ^ utilities.c: In function 'Write_Tree': utilities.c:633:16: warning: variable 'last_len' set but not used [-Wunused-but-set-variable] int init_len,last_len; ^ utilities.c: In function 'Make_Edge_Dirs': utilities.c:1366:11: warning: variable 'e_root' set but not used [-Wunused-but-set-variable] t_edge *e_root; ^ utilities.c: In function 'Get_Nexus_Data': utilities.c:1847:7: warning: variable 'in_comment' set but not used [-Wunused-but-set-variable] int in_comment; ^ utilities.c: In function 'Traverse_Prefix_Tree': utilities.c:3411:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable] int ret_val; ^ utilities.c: In function 'NNI': utilities.c:5117:10: warning: variable 'bl_init' set but not used [-Wunused-but-set-variable] phydbl bl_init; ^ utilities.c:5113:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ utilities.c: In function 'NNI_Pars': utilities.c:5382:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ utilities.c: In function 'K80_dist': utilities.c:6236:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'JC69_Dist': utilities.c:6341:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'Hamming_Dist': utilities.c:6417:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'Fast_Br_Len': utilities.c:9597:23: warning: variable 'new_l' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c:9597:17: warning: variable 'old_l' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c:9597:10: warning: variable 'eps_bl' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c: In function 'Print_Diversity': utilities.c:11656:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c optimiz.c optimiz.c: In function 'Generic_Brent': optimiz.c:174:10: warning: variable 'old_lnL' set but not used [-Wunused-but-set-variable] phydbl old_lnL,init_lnL; ^ optimiz.c: In function 'Round_Optimize': optimiz.c:624:26: warning: variable 'tol' set but not used [-Wunused-but-set-variable] phydbl lk_old, lk_new, tol; ^ optimiz.c: In function 'Optimiz_Ext_Br': optimiz.c:762:10: warning: variable 'lk' set but not used [-Wunused-but-set-variable] phydbl lk, lk_init,l_init; ^ optimiz.c: In function 'Missing_Dist_Brent': optimiz.c:2102:10: warning: variable 'bestx' set but not used [-Wunused-but-set-variable] phydbl bestx; ^ optimiz.c:2101:22: warning: variable 'max_LOGlk' set but not used [-Wunused-but-set-variable] phydbl init_LOGlk, max_LOGlk; ^ optimiz.c:2101:10: warning: variable 'init_LOGlk' set but not used [-Wunused-but-set-variable] phydbl init_LOGlk, max_LOGlk; ^ optimiz.c: In function 'Optimiz_Alpha_And_Pinv': optimiz.c:2221:19: warning: variable 'f3' set but not used [-Wunused-but-set-variable] phydbl f0,f1,f2,f3,x0,x1,x2,x3; ^ optimiz.c:2220:19: warning: variable 'lk_final' set but not used [-Wunused-but-set-variable] phydbl lk_init, lk_final; ^ optimiz.c:2220:10: warning: variable 'lk_init' set but not used [-Wunused-but-set-variable] phydbl lk_init, lk_final; ^ optimiz.c: In function 'Opt_Node_Heights_Recurr_Pre': optimiz.c:2706:17: warning: variable 't1' set but not used [-Wunused-but-set-variable] phydbl t0,t1,t2,t3; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c lk.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c bionj.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c models.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c free.c free.c: In function 'Free_Tree_Lk': free.c:305:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] t_node *n; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c help.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c simu.c simu.c: In function 'Simu': simu.c:93:7: warning: variable 'recurr' set but not used [-Wunused-but-set-variable] int recurr; ^ simu.c:92:7: warning: variable 'opt_free_param' set but not used [-Wunused-but-set-variable] int opt_free_param; ^ simu.c: In function 'Select_Edges_To_Swap': simu.c:297:7: warning: variable 'min' set but not used [-Wunused-but-set-variable] int min; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c eigen.c eigen.c: In function 'cmatinv': eigen.c:185:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] complex xmax, t,t1; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c pars.c pars.c: In function 'Update_P_Pars': pars.c:246:18: warning: variable 'matches' set but not used [-Wunused-but-set-variable] int n_patterns,matches; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c alrt.c alrt.c: In function 'NNI_Neigh_BL': alrt.c:321:10: warning: variable 'l1' set but not used [-Wunused-but-set-variable] phydbl l1,l2,l3; ^ alrt.c:315:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4, site; ^ alrt.c: In function 'Make_Target_Swap': alrt.c:759:10: warning: variable 'bl_init' set but not used [-Wunused-but-set-variable] phydbl bl_init; ^ alrt.c:757:23: warning: variable 'e4' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:19: warning: variable 'e3' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:15: warning: variable 'e2' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:11: warning: variable 'e1' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:755:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c interface.c interface.c: In function 'Launch_Interface_Model': interface.c:798:6: warning: variable 'curr_param' set but not used [-Wunused-but-set-variable] int curr_param; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c cl.c cl.c: In function 'Read_Command_Line': cl.c:24:7: warning: variable 'use_gamma' set but not used [-Wunused-but-set-variable] int use_gamma; ^ cl.c:23:7: warning: variable 'open_ps_file' set but not used [-Wunused-but-set-variable] int open_ps_file; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c spr.c spr.c: In function 'Est_Lk_Change': spr.c:1275:37: warning: variable 'u_n' set but not used [-Wunused-but-set-variable] t_node *u_prune, *v_n, *v_nx1, *u_n, *u1, *u2; ^ spr.c: In function 'Best_Lk_Change': spr.c:1817:37: warning: variable 'u_n' set but not used [-Wunused-but-set-variable] t_node *u_prune, *v_n, *v_nx1, *u_n, *u1, *u2; ^ spr.c: In function 'Spr_Subtree': spr.c:3164:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable] int ret_val; ^ spr.c: In function 'Test_All_Spr_Targets': spr.c:3291:18: warning: variable 'approx' set but not used [-Wunused-but-set-variable] int best_found,approx; ^ spr.c:3287:38: warning: variable 'n_up' set but not used [-Wunused-but-set-variable] t_node *n_opp_to_link,*n_v1,*n_v2,*n_up; ^ spr.c: In function 'Test_One_Spr_Target': spr.c:3458:7: warning: variable 'approx' set but not used [-Wunused-but-set-variable] int approx; ^ spr.c:3457:17: warning: variable 'move_pars' set but not used [-Wunused-but-set-variable] int init_pars,move_pars; ^ spr.c: In function 'Speed_Spr_Loop': spr.c:3548:7: warning: variable 'init_thresh' set but not used [-Wunused-but-set-variable] int init_thresh; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c draw.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c stats.c stats.c: In function 'Rnorm_Trunc_Inverse': stats.c:253:12: warning: variable 'rz' set but not used [-Wunused-but-set-variable] phydbl z,rz; ^ stats.c: In function 'Rnorm_Trunc': stats.c:306:12: warning: variable 'rz' set but not used [-Wunused-but-set-variable] phydbl z,rz; ^ stats.c:304:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u, ret_val,eps; ^ stats.c: In function 'Covariance_Matrix': stats.c:1486:22: warning: variable 'var_min' set but not used [-Wunused-but-set-variable] phydbl *cov, *mean,var_min; ^ stats.c: In function 'Gradient': stats.c:1951:7: warning: variable 'n_ok_edges' set but not used [-Wunused-but-set-variable] int n_ok_edges; ^ stats.c: In function 'Hessian_Seo': stats.c:2098:18: warning: variable 'lnL' set but not used [-Wunused-but-set-variable] phydbl ori_lnL,lnL,lnL1,lnL2; ^ stats.c:2095:7: warning: variable 'n_ok_edges' set but not used [-Wunused-but-set-variable] int n_ok_edges; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c rates.c rates.c: In function 'RATES_Average_Substitution_Rate': rates.c:688:20: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] phydbl u,t,t_anc,tmp; ^ rates.c: In function 'RATES_Dmu': rates.c:1123:80: warning: variable 'b2' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c:1123:73: warning: variable 'suminv' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c: In function 'RATES_Dmu_One': rates.c:1178:76: warning: variable 'b2' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c:1178:69: warning: variable 'suminv' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c: In function 'RATES_Random_Branch_Lengths': rates.c:1375:13: warning: variable 'r_d' set but not used [-Wunused-but-set-variable] phydbl r0,r_d; ^ rates.c: In function 'RATES_Dmu2_And_Mu1_Given_N': rates.c:1625:36: warning: variable 'texpn' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c:1625:28: warning: variable 'lexpdt2' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c:1625:20: warning: variable 'lexpdt1' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c: In function 'RATES_Posterior_One_Rate': rates.c:1778:21: warning: variable 'cond_cov' set but not used [-Wunused-but-set-variable] phydbl *cond_mu, *cond_cov; ^ rates.c:1778:11: warning: variable 'cond_mu' set but not used [-Wunused-but-set-variable] phydbl *cond_mu, *cond_cov; ^ rates.c:1777:14: warning: variable 'is_1' set but not used [-Wunused-but-set-variable] short int *is_1; ^ rates.c:1775:10: warning: variable 'cur_l' set but not used [-Wunused-but-set-variable] phydbl cur_l; ^ rates.c:1774:22: warning: variable 'nu' set but not used [-Wunused-but-set-variable] phydbl dt,ra,rd,cr,nu,cel,cvl; ^ rates.c:1774:13: warning: variable 'ra' set but not used [-Wunused-but-set-variable] phydbl dt,ra,rd,cr,nu,cel,cvl; ^ rates.c: In function 'RATES_Posterior_Time_Root': rates.c:2544:38: warning: variable 'new_lnL_rate' set but not used [-Wunused-but-set-variable] phydbl new_lnL_data, cur_lnL_data, new_lnL_rate, cur_lnL_rate; ^ rates.c:2543:16: warning: variable 'cur_l' set but not used [-Wunused-but-set-variable] phydbl new_l,cur_l; ^ rates.c: In function 'RATES_Update_Cur_Bl_Pre': rates.c:2740:19: warning: variable 'nf' set but not used [-Wunused-but-set-variable] phydbl dt,rr,cr,nf,ra,rd,ta,td,nu; ^ rates.c: In function 'RATES_Get_Cov_Matrix_Rooted_Pre': rates.c:2913:15: warning: variable 'done_left' set but not used [-Wunused-but-set-variable] int i, dim, done_left; ^ rates.c: In function 'RATES_Variance_Mu_Pre': rates.c:3022:10: warning: variable 'dt0' set but not used [-Wunused-but-set-variable] phydbl dt0,var0; ^ rates.c: In function 'RATES_Check_Lk_Rates': rates.c:3236:10: warning: variable 'z' set but not used [-Wunused-but-set-variable] phydbl z; ^ rates.c: In function 'RATES_Expected_Tree_Length_Pre': rates.c:3292:10: warning: variable 'sd' set but not used [-Wunused-but-set-variable] phydbl sd; ^ rates.c:3289:12: warning: variable 'u_anc' set but not used [-Wunused-but-set-variable] phydbl u,u_anc,t,t_anc; ^ rates.c:3289:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u,u_anc,t,t_anc; ^ rates.c: In function 'RATES_Get_Correction_Factor': rates.c:3588:10: warning: variable 'num' set but not used [-Wunused-but-set-variable] phydbl num, denom; ^ rates.c: In function 'Sample_Average_Rate': rates.c:3665:13: warning: variable 'td' set but not used [-Wunused-but-set-variable] phydbl ta,td; ^ rates.c:3665:10: warning: variable 'ta' set but not used [-Wunused-but-set-variable] phydbl ta,td; ^ rates.c:3664:13: warning: variable 'rd' set but not used [-Wunused-but-set-variable] phydbl ra,rd; ^ rates.c:3664:10: warning: variable 'ra' set but not used [-Wunused-but-set-variable] phydbl ra,rd; ^ rates.c: In function 'RATES_Set_Clock_And_Nu_Max': rates.c:3812:10: warning: variable 'r_min' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ rates.c:3811:10: warning: variable 'a' set but not used [-Wunused-but-set-variable] phydbl a; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c mcmc.c mcmc.c: In function 'MCMC': mcmc.c:184:14: warning: variable 'cur_lnL' set but not used [-Wunused-but-set-variable] phydbl cur_lnL; ^ mcmc.c: In function 'MCMC_Single_Param_Generic': mcmc.c:394:12: warning: variable 'mult' set but not used [-Wunused-but-set-variable] phydbl K,mult; ^ mcmc.c: In function 'MCMC_One_Rate': mcmc.c:586:13: warning: variable 'cr' set but not used [-Wunused-but-set-variable] phydbl nu,cr; ^ mcmc.c:586:10: warning: variable 'nu' set but not used [-Wunused-but-set-variable] phydbl nu,cr; ^ mcmc.c:583:10: warning: variable 'K' set but not used [-Wunused-but-set-variable] phydbl K; ^ mcmc.c: In function 'MCMC_Tree_Height': mcmc.c:1001:16: warning: variable 'max_t' set but not used [-Wunused-but-set-variable] phydbl min_t,max_t; ^ mcmc.c:1001:10: warning: variable 'min_t' set but not used [-Wunused-but-set-variable] phydbl min_t,max_t; ^ mcmc.c:1000:22: warning: variable 'new_height' set but not used [-Wunused-but-set-variable] phydbl cur_height, new_height; ^ mcmc.c:1000:10: warning: variable 'cur_height' set but not used [-Wunused-but-set-variable] phydbl cur_height, new_height; ^ mcmc.c: In function 'MCMC_Subtree_Height': mcmc.c:1223:21: warning: variable 'new_height' set but not used [-Wunused-but-set-variable] phydbl cur_height,new_height; ^ mcmc.c:1223:10: warning: variable 'cur_height' set but not used [-Wunused-but-set-variable] phydbl cur_height,new_height; ^ mcmc.c: In function 'MCMC_Updown_Nu_Cr': mcmc.c:1597:7: warning: variable 'n_nodes' set but not used [-Wunused-but-set-variable] int n_nodes; ^ mcmc.c: In function 'MCMC_Randomize_Rates': mcmc.c:2614:16: warning: variable 'r_max' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ mcmc.c:2614:10: warning: variable 'r_min' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ mcmc.c:2613:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u; ^ mcmc.c: In function 'MCMC_Read_Param_Vals': mcmc.c:3970:9: warning: variable 'v' set but not used [-Wunused-but-set-variable] int i,v; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c times.c times.c: In function 'TIMES_Lk_Yule_Joint': times.c:853:7: warning: variable 'curr_ts' set but not used [-Wunused-but-set-variable] int curr_ts; ^ times.c:852:10: warning: variable 'eps' set but not used [-Wunused-but-set-variable] phydbl eps; ^ times.c:850:15: warning: variable 'tf' set but not used [-Wunused-but-set-variable] phydbl *ts,*tf; ^ times.c: In function 'TIMES_Lk_Yule_Order': times.c:938:11: warning: variable 'ts' set but not used [-Wunused-but-set-variable] phydbl *ts,*t,*tf; ^ times.c: In function 'TIMES_Lk_Times': times.c:978:10: warning: variable 'condlogdens' set but not used [-Wunused-but-set-variable] phydbl condlogdens; ^ times.c: In function 'TIMES_Log_Number_Of_Ranked_Labelled_Histories': times.c:1163:7: warning: variable 'dir1r' set but not used [-Wunused-but-set-variable] int dir1r,dir2r; ^ times.c: In function 'TIMES_Log_Number_Of_Ranked_Labelled_Histories_Post': times.c:1234:11: warning: variable 'dir1d' set but not used [-Wunused-but-set-variable] int dir1d,dir2d; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c tiporder.c tiporder.c: In function 'TIPO_Read_One_Taxon_Zscore': tiporder.c:1175:9: warning: variable 'line' set but not used [-Wunused-but-set-variable] char *line; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c mg.c mg.c: In function 'PART_Map_St_Nodes_In_Gt_Post': mg.c:1122:9: warning: variable 'dir' set but not used [-Wunused-but-set-variable] int i,dir; ^ mg.c: In function 'PART_Spr': mg.c:1384:7: warning: variable 'move' set but not used [-Wunused-but-set-variable] int move,best_move; ^ mg.c:1383:11: warning: variable 'target' set but not used [-Wunused-but-set-variable] t_edge *target, *pruned; ^ mg.c: In function 'PART_NNI': mg.c:2107:10: warning: variable 'lk0_init' set but not used [-Wunused-but-set-variable] phydbl lk0_init, lk1_init, lk2_init; ^ mg.c:2106:10: warning: variable 'lk_init' set but not used [-Wunused-but-set-variable] phydbl lk_init; ^ mg.c: In function 'PART_Br_Len_Brent': mg.c:2640:14: warning: variable 'bx' set but not used [-Wunused-but-set-variable] phydbl ax, bx, cx; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c m4.c m4.c: In function 'M4_main': m4.c:29:36: warning: variable 'tree_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ m4.c:29:19: warning: variable 'most_likely_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ m4.c:26:11: warning: variable 'mat' set but not used [-Wunused-but-set-variable] matrix *mat; ^ m4.c:25:16: warning: variable 'tree_line_number' set but not used [-Wunused-but-set-variable] int num_tree,tree_line_number,num_rand_tree; ^ m4.c:24:7: warning: variable 'n_otu' set but not used [-Wunused-but-set-variable] int n_otu, num_data_set; ^ m4.c: In function 'M4_Post_Prob_H_Class_Edge_Site': m4.c:771:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns,n_h; ^ m4.c: In function 'M4_Compute_Proba_Hidden_States_On_Edges': m4.c:897:26: warning: variable 'dwell' set but not used [-Wunused-but-set-variable] phydbl ***post_probs, *dwell; ^ m4.c: In function 'M4_Site_Branch_Classification_Experiment': m4.c:1229:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ m4.c:1224:11: warning: variable 'ori_data' set but not used [-Wunused-but-set-variable] calign *ori_data,*cpy_data; ^ m4.c: In function 'M4_Detect_Site_Switches_Experiment': m4.c:1446:16: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int i,n_iter,ns; ^ m4.c: In function 'M4_Posterior_Prediction_Experiment': m4.c:1583:24: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int i,n_iter,n_simul,ns; ^ m4.c:1581:10: warning: variable 'ori_mod' set but not used [-Wunused-but-set-variable] model *ori_mod; ^ m4.c: In function 'M4_Copy_M4_Model': m4.c:1733:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ gcc -Wall -O2 -fomit-frame-pointer -funroll-loops -Wl,-Bsymbolic-functions -Wl,-z,relro -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o mg.o m4.o -lm -lm Done. make[4]: Leaving directory `/build/buildd/phyml-20120412/src' make[4]: Entering directory `/build/buildd/phyml-20120412' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412' make[3]: Leaving directory `/build/buildd/phyml-20120412' make[2]: Leaving directory `/build/buildd/phyml-20120412' # move phyml binary to temporary dir inside debian/ /usr/bin/make prefix=/build/buildd/phyml-20120412/debian install make[2]: Entering directory `/build/buildd/phyml-20120412' Making install in src make[3]: Entering directory `/build/buildd/phyml-20120412/src' :: Building [phyml]. Version 20131023 :: Done. make[4]: Entering directory `/build/buildd/phyml-20120412/src' /bin/mkdir -p '/build/buildd/phyml-20120412/debian/bin' /usr/bin/install -c phyml '/build/buildd/phyml-20120412/debian/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412/src' make[3]: Leaving directory `/build/buildd/phyml-20120412/src' make[3]: Entering directory `/build/buildd/phyml-20120412' make[4]: Entering directory `/build/buildd/phyml-20120412' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412' make[3]: Leaving directory `/build/buildd/phyml-20120412' make[2]: Leaving directory `/build/buildd/phyml-20120412' /usr/bin/make distclean make[2]: Entering directory `/build/buildd/phyml-20120412' Making distclean in src make[3]: Entering directory `/build/buildd/phyml-20120412/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -rf ./.deps rm -f Makefile make[3]: Leaving directory `/build/buildd/phyml-20120412/src' make[3]: Entering directory `/build/buildd/phyml-20120412' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory `/build/buildd/phyml-20120412' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory `/build/buildd/phyml-20120412' dh_auto_configure -- --enable-phytime configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking dependency style of gcc... (cached) none checking for log in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes configure: "Do not use MSSE = because not available on arch powerpc-unknown-linux-gnu" checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -- LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory `/build/buildd/phyml-20120412' make all-recursive make[3]: Entering directory `/build/buildd/phyml-20120412' Making all in src make[4]: Entering directory `/build/buildd/phyml-20120412/src' :: Building [phytime]. Version 20131023 :: gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c main.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c utilities.c utilities.c: In function 'Read_Branch_Label': utilities.c:294:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i,posp,posl; ^ utilities.c: In function 'Write_Tree': utilities.c:633:16: warning: variable 'last_len' set but not used [-Wunused-but-set-variable] int init_len,last_len; ^ utilities.c: In function 'Make_Edge_Dirs': utilities.c:1366:11: warning: variable 'e_root' set but not used [-Wunused-but-set-variable] t_edge *e_root; ^ utilities.c: In function 'Get_Nexus_Data': utilities.c:1847:7: warning: variable 'in_comment' set but not used [-Wunused-but-set-variable] int in_comment; ^ utilities.c: In function 'Traverse_Prefix_Tree': utilities.c:3411:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable] int ret_val; ^ utilities.c: In function 'NNI': utilities.c:5117:10: warning: variable 'bl_init' set but not used [-Wunused-but-set-variable] phydbl bl_init; ^ utilities.c:5113:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ utilities.c: In function 'NNI_Pars': utilities.c:5382:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ utilities.c: In function 'K80_dist': utilities.c:6236:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'JC69_Dist': utilities.c:6341:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'Hamming_Dist': utilities.c:6417:10: warning: variable 'unc_len' set but not used [-Wunused-but-set-variable] phydbl unc_len; ^ utilities.c: In function 'Fast_Br_Len': utilities.c:9597:23: warning: variable 'new_l' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c:9597:17: warning: variable 'old_l' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c:9597:10: warning: variable 'eps_bl' set but not used [-Wunused-but-set-variable] phydbl eps_bl,old_l,new_l; ^ utilities.c: In function 'Print_Diversity': utilities.c:11656:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c optimiz.c optimiz.c: In function 'Generic_Brent': optimiz.c:174:10: warning: variable 'old_lnL' set but not used [-Wunused-but-set-variable] phydbl old_lnL,init_lnL; ^ optimiz.c: In function 'Round_Optimize': optimiz.c:624:26: warning: variable 'tol' set but not used [-Wunused-but-set-variable] phydbl lk_old, lk_new, tol; ^ optimiz.c: In function 'Optimiz_Ext_Br': optimiz.c:762:10: warning: variable 'lk' set but not used [-Wunused-but-set-variable] phydbl lk, lk_init,l_init; ^ optimiz.c: In function 'Missing_Dist_Brent': optimiz.c:2102:10: warning: variable 'bestx' set but not used [-Wunused-but-set-variable] phydbl bestx; ^ optimiz.c:2101:22: warning: variable 'max_LOGlk' set but not used [-Wunused-but-set-variable] phydbl init_LOGlk, max_LOGlk; ^ optimiz.c:2101:10: warning: variable 'init_LOGlk' set but not used [-Wunused-but-set-variable] phydbl init_LOGlk, max_LOGlk; ^ optimiz.c: In function 'Optimiz_Alpha_And_Pinv': optimiz.c:2221:19: warning: variable 'f3' set but not used [-Wunused-but-set-variable] phydbl f0,f1,f2,f3,x0,x1,x2,x3; ^ optimiz.c:2220:19: warning: variable 'lk_final' set but not used [-Wunused-but-set-variable] phydbl lk_init, lk_final; ^ optimiz.c:2220:10: warning: variable 'lk_init' set but not used [-Wunused-but-set-variable] phydbl lk_init, lk_final; ^ optimiz.c: In function 'Opt_Node_Heights_Recurr_Pre': optimiz.c:2706:17: warning: variable 't1' set but not used [-Wunused-but-set-variable] phydbl t0,t1,t2,t3; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c lk.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c bionj.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c models.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c free.c free.c: In function 'Free_Tree_Lk': free.c:305:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] t_node *n; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c help.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c simu.c simu.c: In function 'Simu': simu.c:93:7: warning: variable 'recurr' set but not used [-Wunused-but-set-variable] int recurr; ^ simu.c:92:7: warning: variable 'opt_free_param' set but not used [-Wunused-but-set-variable] int opt_free_param; ^ simu.c: In function 'Select_Edges_To_Swap': simu.c:297:7: warning: variable 'min' set but not used [-Wunused-but-set-variable] int min; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c eigen.c eigen.c: In function 'cmatinv': eigen.c:185:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] complex xmax, t,t1; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c pars.c pars.c: In function 'Update_P_Pars': pars.c:246:18: warning: variable 'matches' set but not used [-Wunused-but-set-variable] int n_patterns,matches; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c alrt.c alrt.c: In function 'NNI_Neigh_BL': alrt.c:321:10: warning: variable 'l1' set but not used [-Wunused-but-set-variable] phydbl l1,l2,l3; ^ alrt.c:315:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4, site; ^ alrt.c: In function 'Make_Target_Swap': alrt.c:759:10: warning: variable 'bl_init' set but not used [-Wunused-but-set-variable] phydbl bl_init; ^ alrt.c:757:23: warning: variable 'e4' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:19: warning: variable 'e3' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:15: warning: variable 'e2' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:757:11: warning: variable 'e1' set but not used [-Wunused-but-set-variable] t_edge *e1,*e2,*e3,*e4; ^ alrt.c:755:7: warning: variable 'l_r' set but not used [-Wunused-but-set-variable] int l_r, r_l, l_v1, l_v2, r_v3, r_v4; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c interface.c interface.c: In function 'Launch_Interface_Model': interface.c:798:6: warning: variable 'curr_param' set but not used [-Wunused-but-set-variable] int curr_param; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c cl.c cl.c: In function 'Read_Command_Line': cl.c:24:7: warning: variable 'use_gamma' set but not used [-Wunused-but-set-variable] int use_gamma; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c spr.c spr.c: In function 'Est_Lk_Change': spr.c:1275:37: warning: variable 'u_n' set but not used [-Wunused-but-set-variable] t_node *u_prune, *v_n, *v_nx1, *u_n, *u1, *u2; ^ spr.c: In function 'Best_Lk_Change': spr.c:1817:37: warning: variable 'u_n' set but not used [-Wunused-but-set-variable] t_node *u_prune, *v_n, *v_nx1, *u_n, *u1, *u2; ^ spr.c: In function 'Spr_Subtree': spr.c:3164:7: warning: variable 'ret_val' set but not used [-Wunused-but-set-variable] int ret_val; ^ spr.c: In function 'Test_All_Spr_Targets': spr.c:3291:18: warning: variable 'approx' set but not used [-Wunused-but-set-variable] int best_found,approx; ^ spr.c:3287:38: warning: variable 'n_up' set but not used [-Wunused-but-set-variable] t_node *n_opp_to_link,*n_v1,*n_v2,*n_up; ^ spr.c: In function 'Test_One_Spr_Target': spr.c:3458:7: warning: variable 'approx' set but not used [-Wunused-but-set-variable] int approx; ^ spr.c:3457:17: warning: variable 'move_pars' set but not used [-Wunused-but-set-variable] int init_pars,move_pars; ^ spr.c: In function 'Speed_Spr_Loop': spr.c:3548:7: warning: variable 'init_thresh' set but not used [-Wunused-but-set-variable] int init_thresh; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c times.c times.c: In function 'TIMES_main': times.c:35:36: warning: variable 'tree_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ times.c:35:19: warning: variable 'most_likely_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ times.c:35:10: warning: variable 'best_lnL' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ times.c:32:11: warning: variable 'mat' set but not used [-Wunused-but-set-variable] matrix *mat; ^ times.c:31:16: warning: variable 'tree_line_number' set but not used [-Wunused-but-set-variable] int num_tree,tree_line_number,num_rand_tree; ^ times.c:30:7: warning: variable 'n_otu' set but not used [-Wunused-but-set-variable] int n_otu, num_data_set; ^ times.c: In function 'TIMES_Lk_Yule_Joint': times.c:853:7: warning: variable 'curr_ts' set but not used [-Wunused-but-set-variable] int curr_ts; ^ times.c:852:10: warning: variable 'eps' set but not used [-Wunused-but-set-variable] phydbl eps; ^ times.c:850:15: warning: variable 'tf' set but not used [-Wunused-but-set-variable] phydbl *ts,*tf; ^ times.c: In function 'TIMES_Lk_Yule_Order': times.c:938:11: warning: variable 'ts' set but not used [-Wunused-but-set-variable] phydbl *ts,*t,*tf; ^ times.c: In function 'TIMES_Lk_Times': times.c:978:10: warning: variable 'condlogdens' set but not used [-Wunused-but-set-variable] phydbl condlogdens; ^ times.c: In function 'TIMES_Log_Number_Of_Ranked_Labelled_Histories': times.c:1163:7: warning: variable 'dir1r' set but not used [-Wunused-but-set-variable] int dir1r,dir2r; ^ times.c: In function 'TIMES_Log_Number_Of_Ranked_Labelled_Histories_Post': times.c:1234:11: warning: variable 'dir1d' set but not used [-Wunused-but-set-variable] int dir1d,dir2d; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c m4.c m4.c: In function 'M4_main': m4.c:29:36: warning: variable 'tree_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ m4.c:29:19: warning: variable 'most_likely_size' set but not used [-Wunused-but-set-variable] phydbl best_lnL,most_likely_size,tree_size; ^ m4.c:26:11: warning: variable 'mat' set but not used [-Wunused-but-set-variable] matrix *mat; ^ m4.c:25:16: warning: variable 'tree_line_number' set but not used [-Wunused-but-set-variable] int num_tree,tree_line_number,num_rand_tree; ^ m4.c:24:7: warning: variable 'n_otu' set but not used [-Wunused-but-set-variable] int n_otu, num_data_set; ^ m4.c: In function 'M4_Post_Prob_H_Class_Edge_Site': m4.c:771:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns,n_h; ^ m4.c: In function 'M4_Compute_Proba_Hidden_States_On_Edges': m4.c:897:26: warning: variable 'dwell' set but not used [-Wunused-but-set-variable] phydbl ***post_probs, *dwell; ^ m4.c: In function 'M4_Site_Branch_Classification_Experiment': m4.c:1229:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ m4.c:1224:11: warning: variable 'ori_data' set but not used [-Wunused-but-set-variable] calign *ori_data,*cpy_data; ^ m4.c: In function 'M4_Detect_Site_Switches_Experiment': m4.c:1446:16: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int i,n_iter,ns; ^ m4.c: In function 'M4_Posterior_Prediction_Experiment': m4.c:1583:24: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int i,n_iter,n_simul,ns; ^ m4.c:1581:10: warning: variable 'ori_mod' set but not used [-Wunused-but-set-variable] model *ori_mod; ^ m4.c: In function 'M4_Copy_M4_Model': m4.c:1733:7: warning: variable 'ns' set but not used [-Wunused-but-set-variable] int ns; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c draw.c gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c rates.c rates.c: In function 'RATES_Average_Substitution_Rate': rates.c:688:20: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] phydbl u,t,t_anc,tmp; ^ rates.c: In function 'RATES_Dmu': rates.c:1123:80: warning: variable 'b2' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c:1123:73: warning: variable 'suminv' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c: In function 'RATES_Dmu_One': rates.c:1178:76: warning: variable 'b2' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c:1178:69: warning: variable 'suminv' set but not used [-Wunused-but-set-variable] phydbl var,cumpoissprob,dens,mean,poissprob,ab2,gammadens,lexpdt,*suminv,b2; ^ rates.c: In function 'RATES_Random_Branch_Lengths': rates.c:1375:13: warning: variable 'r_d' set but not used [-Wunused-but-set-variable] phydbl r0,r_d; ^ rates.c: In function 'RATES_Dmu2_And_Mu1_Given_N': rates.c:1625:36: warning: variable 'texpn' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c:1625:28: warning: variable 'lexpdt2' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c:1625:20: warning: variable 'lexpdt1' set but not used [-Wunused-but-set-variable] phydbl density,lexpdt1,lexpdt2,texpn,cumpoiss,poiss,abb,ab,LOGnf,LOGdt1,LOGdt2,nLOGdt; ^ rates.c: In function 'RATES_Posterior_One_Rate': rates.c:1778:21: warning: variable 'cond_cov' set but not used [-Wunused-but-set-variable] phydbl *cond_mu, *cond_cov; ^ rates.c:1778:11: warning: variable 'cond_mu' set but not used [-Wunused-but-set-variable] phydbl *cond_mu, *cond_cov; ^ rates.c:1777:14: warning: variable 'is_1' set but not used [-Wunused-but-set-variable] short int *is_1; ^ rates.c:1775:10: warning: variable 'cur_l' set but not used [-Wunused-but-set-variable] phydbl cur_l; ^ rates.c:1774:22: warning: variable 'nu' set but not used [-Wunused-but-set-variable] phydbl dt,ra,rd,cr,nu,cel,cvl; ^ rates.c:1774:13: warning: variable 'ra' set but not used [-Wunused-but-set-variable] phydbl dt,ra,rd,cr,nu,cel,cvl; ^ rates.c: In function 'RATES_Posterior_Time_Root': rates.c:2544:38: warning: variable 'new_lnL_rate' set but not used [-Wunused-but-set-variable] phydbl new_lnL_data, cur_lnL_data, new_lnL_rate, cur_lnL_rate; ^ rates.c:2543:16: warning: variable 'cur_l' set but not used [-Wunused-but-set-variable] phydbl new_l,cur_l; ^ rates.c: In function 'RATES_Update_Cur_Bl_Pre': rates.c:2740:19: warning: variable 'nf' set but not used [-Wunused-but-set-variable] phydbl dt,rr,cr,nf,ra,rd,ta,td,nu; ^ rates.c: In function 'RATES_Get_Cov_Matrix_Rooted_Pre': rates.c:2913:15: warning: variable 'done_left' set but not used [-Wunused-but-set-variable] int i, dim, done_left; ^ rates.c: In function 'RATES_Variance_Mu_Pre': rates.c:3022:10: warning: variable 'dt0' set but not used [-Wunused-but-set-variable] phydbl dt0,var0; ^ rates.c: In function 'RATES_Check_Lk_Rates': rates.c:3236:10: warning: variable 'z' set but not used [-Wunused-but-set-variable] phydbl z; ^ rates.c: In function 'RATES_Expected_Tree_Length_Pre': rates.c:3292:10: warning: variable 'sd' set but not used [-Wunused-but-set-variable] phydbl sd; ^ rates.c:3289:12: warning: variable 'u_anc' set but not used [-Wunused-but-set-variable] phydbl u,u_anc,t,t_anc; ^ rates.c:3289:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u,u_anc,t,t_anc; ^ rates.c: In function 'RATES_Get_Correction_Factor': rates.c:3588:10: warning: variable 'num' set but not used [-Wunused-but-set-variable] phydbl num, denom; ^ rates.c: In function 'Sample_Average_Rate': rates.c:3665:13: warning: variable 'td' set but not used [-Wunused-but-set-variable] phydbl ta,td; ^ rates.c:3665:10: warning: variable 'ta' set but not used [-Wunused-but-set-variable] phydbl ta,td; ^ rates.c:3664:13: warning: variable 'rd' set but not used [-Wunused-but-set-variable] phydbl ra,rd; ^ rates.c:3664:10: warning: variable 'ra' set but not used [-Wunused-but-set-variable] phydbl ra,rd; ^ rates.c: In function 'RATES_Set_Clock_And_Nu_Max': rates.c:3812:10: warning: variable 'r_min' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ rates.c:3811:10: warning: variable 'a' set but not used [-Wunused-but-set-variable] phydbl a; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c mcmc.c mcmc.c: In function 'MCMC': mcmc.c:184:14: warning: variable 'cur_lnL' set but not used [-Wunused-but-set-variable] phydbl cur_lnL; ^ mcmc.c: In function 'MCMC_Single_Param_Generic': mcmc.c:394:12: warning: variable 'mult' set but not used [-Wunused-but-set-variable] phydbl K,mult; ^ mcmc.c: In function 'MCMC_One_Rate': mcmc.c:586:13: warning: variable 'cr' set but not used [-Wunused-but-set-variable] phydbl nu,cr; ^ mcmc.c:586:10: warning: variable 'nu' set but not used [-Wunused-but-set-variable] phydbl nu,cr; ^ mcmc.c:583:10: warning: variable 'K' set but not used [-Wunused-but-set-variable] phydbl K; ^ mcmc.c: In function 'MCMC_Tree_Height': mcmc.c:1001:16: warning: variable 'max_t' set but not used [-Wunused-but-set-variable] phydbl min_t,max_t; ^ mcmc.c:1001:10: warning: variable 'min_t' set but not used [-Wunused-but-set-variable] phydbl min_t,max_t; ^ mcmc.c:1000:22: warning: variable 'new_height' set but not used [-Wunused-but-set-variable] phydbl cur_height, new_height; ^ mcmc.c:1000:10: warning: variable 'cur_height' set but not used [-Wunused-but-set-variable] phydbl cur_height, new_height; ^ mcmc.c: In function 'MCMC_Subtree_Height': mcmc.c:1223:21: warning: variable 'new_height' set but not used [-Wunused-but-set-variable] phydbl cur_height,new_height; ^ mcmc.c:1223:10: warning: variable 'cur_height' set but not used [-Wunused-but-set-variable] phydbl cur_height,new_height; ^ mcmc.c: In function 'MCMC_Updown_Nu_Cr': mcmc.c:1597:7: warning: variable 'n_nodes' set but not used [-Wunused-but-set-variable] int n_nodes; ^ mcmc.c: In function 'MCMC_Randomize_Rates': mcmc.c:2614:16: warning: variable 'r_max' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ mcmc.c:2614:10: warning: variable 'r_min' set but not used [-Wunused-but-set-variable] phydbl r_min,r_max; ^ mcmc.c:2613:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u; ^ mcmc.c: In function 'MCMC_Read_Param_Vals': mcmc.c:3970:9: warning: variable 'v' set but not used [-Wunused-but-set-variable] int i,v; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c stats.c stats.c: In function 'Rnorm_Trunc_Inverse': stats.c:253:12: warning: variable 'rz' set but not used [-Wunused-but-set-variable] phydbl z,rz; ^ stats.c: In function 'Rnorm_Trunc': stats.c:306:12: warning: variable 'rz' set but not used [-Wunused-but-set-variable] phydbl z,rz; ^ stats.c:304:10: warning: variable 'u' set but not used [-Wunused-but-set-variable] phydbl u, ret_val,eps; ^ stats.c: In function 'Covariance_Matrix': stats.c:1486:22: warning: variable 'var_min' set but not used [-Wunused-but-set-variable] phydbl *cov, *mean,var_min; ^ stats.c: In function 'Gradient': stats.c:1951:7: warning: variable 'n_ok_edges' set but not used [-Wunused-but-set-variable] int n_ok_edges; ^ stats.c: In function 'Hessian_Seo': stats.c:2098:18: warning: variable 'lnL' set but not used [-Wunused-but-set-variable] phydbl ori_lnL,lnL,lnL1,lnL2; ^ stats.c:2095:7: warning: variable 'n_ok_edges' set but not used [-Wunused-but-set-variable] int n_ok_edges; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c mg.c mg.c: In function 'PART_Map_St_Nodes_In_Gt_Post': mg.c:1122:9: warning: variable 'dir' set but not used [-Wunused-but-set-variable] int i,dir; ^ mg.c: In function 'PART_Spr': mg.c:1384:7: warning: variable 'move' set but not used [-Wunused-but-set-variable] int move,best_move; ^ mg.c:1383:11: warning: variable 'target' set but not used [-Wunused-but-set-variable] t_edge *target, *pruned; ^ mg.c: In function 'PART_NNI': mg.c:2107:10: warning: variable 'lk0_init' set but not used [-Wunused-but-set-variable] phydbl lk0_init, lk1_init, lk2_init; ^ mg.c:2106:10: warning: variable 'lk_init' set but not used [-Wunused-but-set-variable] phydbl lk_init; ^ mg.c: In function 'PART_Br_Len_Brent': mg.c:2640:14: warning: variable 'bx' set but not used [-Wunused-but-set-variable] phydbl ax, bx, cx; ^ gcc -I. -I.. -D_FORTIFY_SOURCE=2 -Wall -O2 -fomit-frame-pointer -funroll-loops -c tiporder.c tiporder.c: In function 'TIPO_Read_One_Taxon_Zscore': tiporder.c:1175:9: warning: variable 'line' set but not used [-Wunused-but-set-variable] char *line; ^ gcc -Wall -O2 -fomit-frame-pointer -funroll-loops -Wl,-Bsymbolic-functions -Wl,-z,relro -o phytime main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o times.o m4.o draw.o rates.o mcmc.o stats.o mg.o tiporder.o -lm -lm Done. make[4]: Leaving directory `/build/buildd/phyml-20120412/src' make[4]: Entering directory `/build/buildd/phyml-20120412' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412' make[3]: Leaving directory `/build/buildd/phyml-20120412' make[2]: Leaving directory `/build/buildd/phyml-20120412' make[1]: Leaving directory `/build/buildd/phyml-20120412' dh_auto_test -a make[1]: Entering directory `/build/buildd/phyml-20120412' Making check in src make[2]: Entering directory `/build/buildd/phyml-20120412/src' :: Building [phytime]. Version 20131023 :: Done. make[2]: Leaving directory `/build/buildd/phyml-20120412/src' make[2]: Entering directory `/build/buildd/phyml-20120412' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/phyml-20120412' make[1]: Leaving directory `/build/buildd/phyml-20120412' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/phyml-20120412' dh_auto_install make[2]: Entering directory `/build/buildd/phyml-20120412' Making install in src make[3]: Entering directory `/build/buildd/phyml-20120412/src' :: Building [phytime]. Version 20131023 :: Done. make[4]: Entering directory `/build/buildd/phyml-20120412/src' /bin/mkdir -p '/build/buildd/phyml-20120412/debian/phyml/usr/bin' /usr/bin/install -c phytime '/build/buildd/phyml-20120412/debian/phyml/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412/src' make[3]: Leaving directory `/build/buildd/phyml-20120412/src' make[3]: Entering directory `/build/buildd/phyml-20120412' make[4]: Entering directory `/build/buildd/phyml-20120412' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/phyml-20120412' make[3]: Leaving directory `/build/buildd/phyml-20120412' make[2]: Leaving directory `/build/buildd/phyml-20120412' # install phyml binary we have kept safe above mv /build/buildd/phyml-20120412/debian/bin/* /build/buildd/phyml-20120412/debian/phyml/usr/bin make[1]: Leaving directory `/build/buildd/phyml-20120412' debian/rules override_dh_installdocs make[1]: Entering directory `/build/buildd/phyml-20120412' dh_installdocs mv /build/buildd/phyml-20120412/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /build/buildd/phyml-20120412/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory `/build/buildd/phyml-20120412' dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/phyml-20120412' dh_compress --exclude=.pdf make[1]: Leaving directory `/build/buildd/phyml-20120412' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: phyml dh_strip debug symbol extraction: packages to act on: phyml dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 phyml is already stripped, ignoring find: `/build/buildd/phyml-20120412/debian/phyml-dbgsym': No such file or directory dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing phyml (in debian/phyml); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/phyml/DEBIAN/control, package phyml, directory debian/phyml pkgstripfiles: PNG optimization for package phyml took 0 s dpkg-deb: warning: 'debian/phyml/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `phyml' in `../phyml_20120412-2_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../phyml_20120412-2_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build phyml-20120412 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131023-2254 chroot-autobuild/build/buildd/phyml_20120412-2_powerpc.deb: new debian package, version 2.0. size 1652994 bytes: control archive= 1419 bytes. 1717 bytes, 32 lines control 564 bytes, 9 lines md5sums Package: phyml Version: 2:20120412-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2660 Depends: libc6 (>= 2.7) Section: science Priority: optional Homepage: http://www.atgc-montpellier.fr/phyml Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. . This pakcage also includes PhyTime. chroot-autobuild/build/buildd/phyml_20120412-2_powerpc.deb: drwxr-xr-x root/root 0 2013-10-23 22:54 ./ drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/ drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/bin/ -rwxr-xr-x root/root 1054480 2013-10-23 22:54 ./usr/bin/phytime -rwxr-xr-x root/root 1050384 2013-10-23 22:54 ./usr/bin/phyml drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/ drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/doc/phyml/ -rw-r--r-- root/root 299 2013-07-31 12:03 ./usr/share/doc/phyml/README.Debian -rw-r--r-- root/root 8681 2013-07-31 06:29 ./usr/share/doc/phyml/copyright -rw-r--r-- root/root 561368 2011-09-19 01:16 ./usr/share/doc/phyml/phyml_manual.pdf -rw-r--r-- root/root 1525 2013-08-05 07:59 ./usr/share/doc/phyml/changelog.Debian.gz drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/doc-base/ -rw-r--r-- root/root 202 2011-12-07 07:37 ./usr/share/doc-base/phyml drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/man/ drwxr-xr-x root/root 0 2013-10-23 22:54 ./usr/share/man/man1/ -rw-r--r-- root/root 2898 2013-10-23 22:54 ./usr/share/man/man1/phyml.1.gz -rw-r--r-- root/root 2306 2013-10-23 22:54 ./usr/share/man/man1/phytime.1.gz phyml_20120412-2_powerpc.changes: Format: 1.8 Date: Mon, 05 Aug 2013 09:56:27 +0200 Source: phyml Binary: phyml Architecture: powerpc Version: 2:20120412-2 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Andreas Tille Description: phyml - Phylogenetic estimation using Maximum Likelihood Closes: 718747 Changes: phyml (2:20120412-2) unstable; urgency=low . * debian/patches/sse_only_if_supported.patch: Check architecture before deciding to build using -msse Closes: #718747 Checksums-Sha1: 969bb2e1ea4687e2c68c3bdacb96678d5254c041 1652994 phyml_20120412-2_powerpc.deb Checksums-Sha256: 3aea9212f99a01549b786efc0a6ff0501e2e64ffe5b540e4f0a821ccfa0ca91d 1652994 phyml_20120412-2_powerpc.deb Files: 478a2a920b943561406054ea29c33f5f 1652994 science optional phyml_20120412-2_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131023-2254 Build needed 00:03:40, 17380k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5141556'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5141556/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5141556'] Unmounting chroot for build PACKAGEBUILD-5141556... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5141556'] Removing build PACKAGEBUILD-5141556