https://launchpad.net/ubuntu/+source/phyml/3:3.3.20200621-1/+build/19626921 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-034 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 23 Jul 05:12:23 ntpdate[1937]: adjust time server 10.211.37.1 offset -0.005374 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19626921 --image-type chroot /home/buildd/filecache-default/bb4dbf4bd068f4f4da4a9ba56413a8aa8579df72 Creating target for build PACKAGEBUILD-19626921 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19626921 Starting target for build PACKAGEBUILD-19626921 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19626921 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19626921 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19626921 Updating target for build PACKAGEBUILD-19626921 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 Packages [949 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe arm64 Packages [8639 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5232 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 Packages [62.5 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [35.8 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe arm64 Packages [513 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [238 kB] Fetched 16.7 MB in 7s (2283 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed5 libnettle7 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed6 libnettle8 The following packages will be upgraded: apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential bzip2 ca-certificates coreutils cpp-9 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libitm1 libjson-c4 libkmod2 liblsan0 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnpth0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.30 libprocps8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave make mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.30 pinentry-curses pkgbinarymangler procps sed systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata ubuntu-keyring util-linux xz-utils 127 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 63.8 MB of archives. After this operation, 1563 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main arm64 libcrypt-dev arm64 1:4.4.16-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main arm64 libc6-dev arm64 2.31-0ubuntu10 [2059 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 libc-dev-bin arm64 2.31-0ubuntu10 [64.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main arm64 libcrypt1 arm64 1:4.4.16-1ubuntu1 [82.5 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 linux-libc-dev arm64 5.4.0-42.46 [1090 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main arm64 libatomic1 arm64 10.1.0-6ubuntu1 [9868 B] Get:7 http://ftpmaster.internal/ubuntu groovy/main arm64 libubsan1 arm64 10.1.0-6ubuntu1 [127 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 libtsan0 arm64 10.1.0-6ubuntu1 [303 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 liblsan0 arm64 10.1.0-6ubuntu1 [130 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 libitm1 arm64 10.1.0-6ubuntu1 [24.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 libgomp1 arm64 10.1.0-6ubuntu1 [95.6 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-10-base arm64 10.1.0-6ubuntu1 [19.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcc-s1 arm64 10.1.0-6ubuntu1 [34.6 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libcc1-0 arm64 10.1.0-6ubuntu1 [37.2 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 libstdc++6 arm64 10.1.0-6ubuntu1 [463 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 libc6 arm64 2.31-0ubuntu10 [2266 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 base-files arm64 11ubuntu9 [60.0 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 debianutils arm64 4.11 [85.3 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 bash arm64 5.0-6ubuntu2 [603 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 bsdutils arm64 1:2.35.2-9ubuntu1 [82.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 coreutils arm64 8.30-3ubuntu3 [1165 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 dpkg arm64 1.19.7ubuntu4 [1113 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 perl-modules-5.30 all 5.30.3-4 [2740 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 libperl5.30 arm64 5.30.3-4 [3748 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 perl arm64 5.30.3-4 [223 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 perl-base arm64 5.30.3-4 [1391 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 bzip2 arm64 1.0.8-4ubuntu2 [32.4 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 libbz2-1.0 arm64 1.0.8-4ubuntu2 [32.7 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 debconf all 1.5.74 [121 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 dash arm64 0.5.10.2-7 [84.2 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 diffutils arm64 1:3.7-3build1 [189 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main arm64 gzip arm64 1.10-2ubuntu1 [92.8 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main arm64 login arm64 1:4.8.1-1ubuntu6 [218 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main arm64 ncurses-bin arm64 6.2-1 [167 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main arm64 sed arm64 4.7-1build1 [185 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libselinux1 arm64 3.1-2 [64.9 kB] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libblkid1 arm64 2.35.2-9ubuntu1 [126 kB] Get:38 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libuuid1 arm64 2.35.2-9ubuntu1 [21.4 kB] Get:39 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libfdisk1 arm64 2.35.2-9ubuntu1 [157 kB] Get:40 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libmount1 arm64 2.35.2-9ubuntu1 [137 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main arm64 libncurses6 arm64 6.2-1 [91.8 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main arm64 libncursesw6 arm64 6.2-1 [120 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main arm64 libtinfo6 arm64 6.2-1 [81.2 kB] Get:44 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libsmartcols1 arm64 2.35.2-9ubuntu1 [89.8 kB] Get:45 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 fdisk arm64 2.35.2-9ubuntu1 [118 kB] Get:46 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 util-linux arm64 2.35.2-9ubuntu1 [1008 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main arm64 init-system-helpers all 1.58 [38.4 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main arm64 libc-bin arm64 2.31-0ubuntu10 [504 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main arm64 ncurses-base all 6.2-1 [18.7 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main arm64 sysvinit-utils arm64 2.96-3ubuntu1 [20.4 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main arm64 libgpg-error0 arm64 1.38-2 [59.8 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcrypt20 arm64 1.8.5-5ubuntu2 [350 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 liblzma5 arm64 5.2.4-1ubuntu1 [87.9 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-sysv arm64 245.6-3ubuntu3 [10.3 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-timesyncd arm64 245.6-3ubuntu3 [26.2 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main arm64 libacl1 arm64 2.2.53-8 [17.9 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main arm64 libapparmor1 arm64 2.13.3-7ubuntu6 [33.1 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main arm64 libcap2 arm64 1:2.36-1 [16.1 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main arm64 libargon2-1 arm64 0~20171227-0.2build20.10.0 [18.5 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main arm64 libudev1 arm64 245.6-3ubuntu3 [67.9 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main arm64 libdevmapper1.02.1 arm64 2:1.02.167-1ubuntu3 [110 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main arm64 libjson-c4 arm64 0.13.1+dfsg-9 [28.3 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main arm64 libssl1.1 arm64 1.1.1f-1ubuntu3 [1154 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main arm64 libcryptsetup12 arm64 2:2.3.3-1ubuntu3 [176 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main arm64 libnettle8 arm64 3.6-2 [130 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main arm64 libgmp10 arm64 2:6.2.0+dfsg-6 [217 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main arm64 libhogweed6 arm64 3.6-2 [190 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main arm64 libunistring2 arm64 0.9.10-4 [359 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main arm64 libidn2-0 arm64 2.3.0-1 [51.9 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main arm64 libgnutls30 arm64 3.6.13-4ubuntu4 [692 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main arm64 libkmod2 arm64 27+20200310-2ubuntu1 [40.7 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam0g arm64 1.3.1-5ubuntu5 [53.9 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main arm64 libseccomp2 arm64 2.4.3-1ubuntu4 [39.8 kB] Get:74 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 mount arm64 2.35.2-9ubuntu1 [115 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd arm64 245.6-3ubuntu3 [3494 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main arm64 libsystemd0 arm64 245.6-3ubuntu3 [246 kB] Get:77 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libzstd1 arm64 1.4.5+dfsg-3 [277 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main arm64 libapt-pkg6.0 arm64 2.1.7 [769 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main arm64 gpgv arm64 2.2.20-1ubuntu1 [184 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main arm64 ubuntu-keyring all 2020.06.17.1 [22.2 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main arm64 apt arm64 2.1.7 [1238 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-modules-bin arm64 1.3.1-5ubuntu5 [35.7 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-modules arm64 1.3.1-5ubuntu5 [242 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main arm64 logsave arm64 1.45.6-1ubuntu1 [10.2 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main arm64 libext2fs2 arm64 1.45.6-1ubuntu1 [177 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main arm64 e2fsprogs arm64 1.45.6-1ubuntu1 [504 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main arm64 init arm64 1.58 [6172 B] Get:88 http://ftpmaster.internal/ubuntu groovy/main arm64 libcap-ng0 arm64 0.7.9-2.2 [10.6 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main arm64 libdebconfclient0 arm64 0.252ubuntu1 [6196 B] Get:90 http://ftpmaster.internal/ubuntu groovy/main arm64 libpam-runtime all 1.3.1-5ubuntu5 [37.3 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main arm64 libpcre3 arm64 2:8.39-13 [209 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main arm64 libsepol1 arm64 3.1-1 [234 kB] Get:93 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libsemanage-common all 3.1-1 [10.2 kB] Get:94 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libsemanage1 arm64 3.1-1 [80.6 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main arm64 passwd arm64 1:4.8.1-1ubuntu6 [770 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main arm64 libcom-err2 arm64 1.45.6-1ubuntu1 [9336 B] Get:97 http://ftpmaster.internal/ubuntu groovy/main arm64 libprocps8 arm64 2:3.3.16-5ubuntu1 [31.5 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main arm64 libss2 arm64 1.45.6-1ubuntu1 [10.7 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main arm64 procps arm64 2:3.3.16-5ubuntu1 [229 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main arm64 openssl arm64 1.1.1f-1ubuntu3 [599 kB] Get:101 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 ca-certificates all 20200601 [147 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main arm64 libsqlite3-0 arm64 3.32.3-1 [509 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main arm64 tzdata all 2020a-0ubuntu1 [293 kB] Get:104 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 xz-utils arm64 5.2.4-1ubuntu1 [81.2 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main arm64 libctf0 arm64 2.34.90.20200716-1ubuntu1 [43.3 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils-aarch64-linux-gnu arm64 2.34.90.20200716-1ubuntu1 [2000 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main arm64 libbinutils arm64 2.34.90.20200716-1ubuntu1 [479 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils arm64 2.34.90.20200716-1ubuntu1 [3376 B] Get:109 http://ftpmaster.internal/ubuntu groovy/main arm64 binutils-common arm64 2.34.90.20200716-1ubuntu1 [212 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main arm64 libctf-nobfd0 arm64 2.34.90.20200716-1ubuntu1 [44.0 kB] Get:111 http://ftpmaster.internal/ubuntu groovy/main arm64 make arm64 4.3-4ubuntu1 [158 kB] Get:112 http://ftpmaster.internal/ubuntu groovy/main arm64 dpkg-dev all 1.19.7ubuntu4 [679 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/main arm64 libdpkg-perl all 1.19.7ubuntu4 [230 kB] Get:114 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 build-essential arm64 12.8ubuntu3 [4636 B] Get:115 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libasan5 arm64 9.3.0-16ubuntu1 [365 kB] Get:116 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 g++-9 arm64 9.3.0-16ubuntu1 [6820 kB] Get:117 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gcc-9 arm64 9.3.0-16ubuntu1 [6695 kB] Get:118 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libstdc++-9-dev arm64 9.3.0-16ubuntu1 [1679 kB] Get:119 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libgcc-9-dev arm64 9.3.0-16ubuntu1 [910 kB] Get:120 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 cpp-9 arm64 9.3.0-16ubuntu1 [5968 kB] Get:121 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gcc-9-base arm64 9.3.0-16ubuntu1 [19.3 kB] Get:122 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libmpfr6 arm64 4.1.0-3 [216 kB] Get:123 http://ftpmaster.internal/ubuntu groovy/main arm64 libassuan0 arm64 2.5.3-7.1 [33.1 kB] Get:124 http://ftpmaster.internal/ubuntu groovy/main arm64 pinentry-curses arm64 1.1.0-4build1 [34.4 kB] Get:125 http://ftpmaster.internal/ubuntu groovy/main arm64 libnpth0 arm64 1.6-2 [7644 B] Get:126 http://ftpmaster.internal/ubuntu groovy/main arm64 gpg arm64 2.2.20-1ubuntu1 [443 kB] Get:127 http://ftpmaster.internal/ubuntu groovy/main arm64 gpgconf arm64 2.2.20-1ubuntu1 [117 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main arm64 gpg-agent arm64 2.2.20-1ubuntu1 [216 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/main arm64 pkgbinarymangler all 146 [31.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.8 MB in 8s (8099 kB/s) (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.16-1ubuntu1_arm64.deb ... Unpacking libcrypt-dev:arm64 (1:4.4.16-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Preparing to unpack .../libc6-dev_2.31-0ubuntu10_arm64.deb ... Unpacking libc6-dev:arm64 (2.31-0ubuntu10) over (2.31-0ubuntu9) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu10_arm64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu10) over (2.31-0ubuntu9) ... Preparing to unpack .../libcrypt1_1%3a4.4.16-1ubuntu1_arm64.deb ... Unpacking libcrypt1:arm64 (1:4.4.16-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:arm64 (1:4.4.16-1ubuntu1) ... (Reading database ... 12808 files and directories currently installed.) Preparing to unpack .../0-linux-libc-dev_5.4.0-42.46_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.4.0-42.46) over (5.4.0-26.30) ... Preparing to unpack .../1-libatomic1_10.1.0-6ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (10.1.0-6ubuntu1) over (10-20200411-0ubuntu1) ... 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Setting up binutils-common:arm64 (2.34.90.20200716-1ubuntu1) ... Setting up linux-libc-dev:arm64 (5.4.0-42.46) ... Setting up libctf-nobfd0:arm64 (2.34.90.20200716-1ubuntu1) ... Setting up libnpth0:arm64 (1.6-2) ... Setting up libcom-err2:arm64 (1.45.6-1ubuntu1) ... Setting up libassuan0:arm64 (2.5.3-7.1) ... Setting up libgomp1:arm64 (10.1.0-6ubuntu1) ... Setting up bzip2 (1.0.8-4ubuntu2) ... Setting up tzdata (2020a-0ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jul 23 05:13:22 UTC 2020. Universal Time is now: Thu Jul 23 05:13:22 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.3-4ubuntu1) ... Setting up libmpfr6:arm64 (4.1.0-3) ... Setting up libncurses6:arm64 (6.2-1) ... Setting up xz-utils (5.2.4-1ubuntu1) ... Setting up libatomic1:arm64 (10.1.0-6ubuntu1) ... Setting up libss2:arm64 (1.45.6-1ubuntu1) ... Setting up libncursesw6:arm64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libfdisk1:arm64 (2.35.2-9ubuntu1) ... Setting up libubsan1:arm64 (10.1.0-6ubuntu1) ... Setting up libcrypt-dev:arm64 (1:4.4.16-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:arm64 (5.30.3-4) ... Setting up libbinutils:arm64 (2.34.90.20200716-1ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu10) ... Setting up openssl (1.1.1f-1ubuntu3) ... Setting up libcc1-0:arm64 (10.1.0-6ubuntu1) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up liblsan0:arm64 (10.1.0-6ubuntu1) ... Setting up libprocps8:arm64 (2:3.3.16-5ubuntu1) ... Setting up libitm1:arm64 (10.1.0-6ubuntu1) ... Setting up gcc-9-base:arm64 (9.3.0-16ubuntu1) ... Setting up libtsan0:arm64 (10.1.0-6ubuntu1) ... Setting up libctf0:arm64 (2.34.90.20200716-1ubuntu1) ... Setting up pinentry-curses (1.1.0-4build1) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.34.90.20200716-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.34.90.20200716-1ubuntu1) ... Setting up fdisk (2.35.2-9ubuntu1) ... Setting up ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 13 added, 15 removed; done. Setting up libasan5:arm64 (9.3.0-16ubuntu1) ... Setting up perl (5.30.3-4) ... Setting up libdpkg-perl (1.19.7ubuntu4) ... Setting up procps (2:3.3.16-5ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.3.0-16ubuntu1) ... Setting up libc6-dev:arm64 (2.31-0ubuntu10) ... Setting up dpkg-dev (1.19.7ubuntu4) ... Setting up libgcc-9-dev:arm64 (9.3.0-16ubuntu1) ... Setting up build-essential (12.8ubuntu3) ... Setting up gcc-9 (9.3.0-16ubuntu1) ... Setting up libstdc++-9-dev:arm64 (9.3.0-16ubuntu1) ... Setting up g++-9 (9.3.0-16ubuntu1) ... Processing triggers for systemd (245.6-3ubuntu3) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... Processing triggers for ca-certificates (20200601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19626921 arm64 groovy-proposed -c chroot:build-PACKAGEBUILD-19626921 --arch=arm64 --dist=groovy-proposed --nolog phyml_3.3.20200621-1.dsc Initiating build PACKAGEBUILD-19626921 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-034.buildd +==============================================================================+ | phyml 3:3.3.20200621-1 (arm64) 23 Jul 2020 05:13 | +==============================================================================+ Package: phyml Version: 3:3.3.20200621-1 Source Version: 3:3.3.20200621-1 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/phyml-GB_r49/phyml-3.3.20200621' with '<>' I: NOTICE: Log filtering will replace 'build/phyml-GB_r49' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19626921/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- phyml_3.3.20200621-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LQm9_D/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-LQm9_D/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LQm9_D/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-LQm9_D/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LQm9_D/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-LQm9_D/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (87.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed5 libnettle7 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LQm9_D/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (71.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12821 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 13), pkg-config, libopenmpi-dev, chrpath Filtered Build-Depends: debhelper-compat (= 13), pkg-config, libopenmpi-dev, chrpath dpkg-deb: building package 'sbuild-build-depends-phyml-dummy' in '/<>/resolver-rroMF5/apt_archive/sbuild-build-depends-phyml-dummy.deb'. Ign:1 copy:/<>/resolver-rroMF5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rroMF5/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rroMF5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rroMF5/apt_archive ./ Sources [236 B] Get:5 copy:/<>/resolver-rroMF5/apt_archive ./ Packages [556 B] Fetched 2911 B in 0s (103 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install phyml build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed5 libnettle7 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu66 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-doc libcoarrays-dev groff krb5-doc krb5-user libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu66 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf sbuild-build-depends-phyml-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 31.7 MB of archives. After this operation, 132 MB of additional disk space will be used. Get:1 copy:/<>/resolver-rroMF5/apt_archive ./ sbuild-build-depends-phyml-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 bsdextrautils arm64 2.35.2-9ubuntu1 [73.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 libuchardet0 arm64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main arm64 groff-base arm64 1.22.4-5 [797 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 libpipeline1 arm64 1.5.2-2build1 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main arm64 man-db arm64 2.9.3-2 [1100 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic-mgc arm64 1:5.38-5 [218 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic1 arm64 1:5.38-5 [71.6 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 file arm64 1:5.38-5 [23.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 libelf1 arm64 0.180-0ubuntu1 [43.6 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 libglib2.0-0 arm64 2.64.4-1 [1198 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 libicu66 arm64 66.1-2ubuntu3 [8357 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libxml2 arm64 2.9.10+dfsg-5 [572 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext-base arm64 0.19.8.1-10build1 [48.2 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 libcbor0.6 arm64 0.6.0-0ubuntu2 [20.6 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 libedit2 arm64 3.1-20191231-1 [82.7 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 libfido2-1 arm64 1.4.0-2 [46.7 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 libkrb5support0 arm64 1.17-10 [30.2 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main arm64 libk5crypto3 arm64 1.17-10 [80.3 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 libkeyutils1 arm64 1.6.1-2ubuntu1 [9932 B] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 libkrb5-3 arm64 1.17-10 [312 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 libgssapi-krb5-2 arm64 1.17-10 [113 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 libnuma1 arm64 2.0.12-1build1 [20.6 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 libxau6 arm64 1:1.0.9-0ubuntu1 [7356 B] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu1 [10.3 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 libxcb1 arm64 1.14-2 [43.0 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 libx11-6 arm64 2:1.6.9-2ubuntu1 [553 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 libxext6 arm64 2:1.3.4-0ubuntu1 [27.7 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 openssh-client arm64 1:8.3p1-1 [639 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main arm64 libsigsegv2 arm64 2.12-2build1 [13.7 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main arm64 autoconf all 2.69-11.1 [321 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main arm64 automake all 1:1.16.2-3ubuntu1 [548 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main arm64 autopoint all 0.19.8.1-10build1 [412 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/universe arm64 chrpath arm64 0.16-2 [12.1 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main arm64 libtool all 2.4.6-14 [161 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-autoreconf all 19 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main arm64 libdebhelper-perl all 13.2ubuntu1 [64.2 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:44 http://ftpmaster.internal/ubuntu groovy/main arm64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:46 http://ftpmaster.internal/ubuntu groovy/main arm64 dwz arm64 0.13-5 [134 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext arm64 0.19.8.1-10build1 [850 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main arm64 po-debconf all 1.0.21 [233 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main arm64 debhelper all 13.2ubuntu1 [878 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main arm64 libgfortran5 arm64 10.1.0-6ubuntu1 [345 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libgfortran-9-dev arm64 9.3.0-16ubuntu1 [390 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gfortran-9 arm64 9.3.0-16ubuntu1 [6369 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main arm64 libnl-3-200 arm64 3.4.0-1 [51.5 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main arm64 libnl-route-3-200 arm64 3.4.0-1 [138 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main arm64 libibverbs1 arm64 29.0-1build1 [50.8 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main arm64 ibverbs-providers arm64 29.0-1build1 [218 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-2.1-7 arm64 2.1.12-stable-1 [126 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-1 [82.8 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-1 [54.0 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-1 [7292 B] Get:63 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-1 [13.1 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main arm64 libevent-dev arm64 2.1.12-stable-1 [259 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhwloc15 arm64 2.2.0+dfsg-3 [116 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main arm64 libltdl7 arm64 2.4.6-14 [37.5 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main arm64 libltdl-dev arm64 2.4.6-14 [162 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main arm64 libnl-3-dev arm64 3.4.0-1 [93.7 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main arm64 libnl-route-3-dev arm64 3.4.0-1 [166 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main arm64 libpciaccess0 arm64 0.16-0ubuntu1 [17.1 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main arm64 libxnvctrl0 arm64 440.82-0ubuntu1 [10.7 kB] Get:72 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 ocl-icd-libopencl1 arm64 2.2.12-4 [30.9 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhwloc-plugins arm64 2.2.0+dfsg-3 [14.1 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/universe arm64 libpmix2 arm64 3.1.5-1 [404 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/universe arm64 libopenmpi3 arm64 4.0.3-6ubuntu2 [1814 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/universe arm64 openmpi-common all 4.0.3-6ubuntu2 [151 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/universe arm64 openmpi-bin arm64 4.0.3-6ubuntu2 [66.6 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main arm64 pkg-config arm64 0.29.2-1ubuntu1 [44.5 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu1 [154 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main arm64 libnuma-dev arm64 2.0.12-1build1 [33.3 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/universe arm64 libhwloc-dev arm64 2.2.0+dfsg-3 [191 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main arm64 libibverbs-dev arm64 29.0-1build1 [442 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/universe arm64 libopenmpi-dev arm64 4.0.3-6ubuntu2 [813 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.7 MB in 1s (29.6 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up openmpi-common (4.0.3-6ubuntu2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:arm64 (1.17-10) ... Setting up libfido2-1:arm64 (1.4.0-2) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libelf1:arm64 (0.180-0ubuntu1) ... Setting up libxml2:arm64 (2.9.10+dfsg-5) ... Setting up chrpath (0.16-2) ... Setting up libevent-pthreads-2.1-7:arm64 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu1) ... Setting up libevent-extra-2.1-7:arm64 (2.1.12-stable-1) ... Setting up libxcb1:arm64 (1.14-2) ... Setting up libtool (2.4.6-14) ... Setting up libedit2:arm64 (3.1-20191231-1) ... Setting up libgfortran-9-dev:arm64 (9.3.0-16ubuntu1) ... Setting up libevent-openssl-2.1-7:arm64 (2.1.12-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:arm64 (2.0.12-1build1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up libgssapi-krb5-2:arm64 (1.17-10) ... Setting up libcroco3:arm64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:arm64 (3.4.0-1) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:arm64 (2:1.6.9-2ubuntu1) ... Setting up automake (1:1.16.2-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:arm64 (29.0-1build1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up gfortran-9 (9.3.0-16ubuntu1) ... Setting up ibverbs-providers:arm64 (29.0-1build1) ... Setting up openssh-client (1:8.3p1-1) ... Setting up libxext6:arm64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:arm64 (440.82-0ubuntu1) ... Setting up libnl-route-3-dev:arm64 (3.4.0-1) ... Setting up libltdl-dev:arm64 (2.4.6-14) ... Setting up libhwloc-dev:arm64 (2.2.0+dfsg-3) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:arm64 (29.0-1build1) ... Setting up libhwloc-plugins:arm64 (2.2.0+dfsg-3) ... Setting up libpmix2:arm64 (3.1.5-1) ... Setting up libopenmpi3:arm64 (4.0.3-6ubuntu2) ... Setting up openmpi-bin (4.0.3-6ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:arm64 (4.0.3-6ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up dh-autoreconf (19) ... Setting up debhelper (13.2ubuntu1) ... Setting up sbuild-build-depends-phyml-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic arm64 (aarch64) Toolchain package versions: binutils_2.34.90.20200716-1ubuntu1 dpkg-dev_1.19.7ubuntu4 g++-9_9.3.0-16ubuntu1 gcc-9_9.3.0-16ubuntu1 libc6-dev_2.31-0ubuntu10 libstdc++-9-dev_9.3.0-16ubuntu1 libstdc++6_10.1.0-6ubuntu1 linux-libc-dev_5.4.0-42.46 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.7 autoconf_2.69-11.1 automake_1:1.16.2-3ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu9 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.34.90.20200716-1ubuntu1 binutils-aarch64-linux-gnu_2.34.90.20200716-1ubuntu1 binutils-common_2.34.90.20200716-1ubuntu1 bsdextrautils_2.35.2-9ubuntu1 bsdutils_1:2.35.2-9ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 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libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.35.2-9ubuntu1 libffi7_3.3-4 libfido2-1_1.4.0-2 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-9-dev_9.3.0-16ubuntu1 libgcc-s1_10.1.0-6ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.3.0-16ubuntu1 libgfortran5_10.1.0-6ubuntu1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.13-4ubuntu4 libgomp1_10.1.0-6ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed5_3.5.1+really3.5.1-2 libhogweed6_3.6-2 libhwloc-dev_2.2.0+dfsg-3 libhwloc-plugins_2.2.0+dfsg-3 libhwloc15_2.2.0+dfsg-3 libibverbs-dev_29.0-1build1 libibverbs1_29.0-1build1 libicu66_66.1-2ubuntu3 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10.1.0-6ubuntu1 libjson-c4_0.13.1+dfsg-9 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.1.0-6ubuntu1 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.2-9ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.1.0-3 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnettle8_3.6-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-2 libnuma-dev_2.0.12-1build1 libnuma1_2.0.12-1build1 libopenmpi-dev_4.0.3-6ubuntu2 libopenmpi3_4.0.3-6ubuntu2 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu5 libpam-modules-bin_1.3.1-5ubuntu5 libpam-runtime_1.3.1-5ubuntu5 libpam0g_1.3.1-5ubuntu5 libpciaccess0_0.16-0ubuntu1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2build1 libpmix2_3.1.5-1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-5ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.35.2-9ubuntu1 libsqlite3-0_3.32.3-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu3 libstdc++-9-dev_9.3.0-16ubuntu1 libstdc++6_10.1.0-6ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.6-3ubuntu3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-6ubuntu1 libubsan1_10.1.0-6ubuntu1 libuchardet0_0.0.7-1 libudev1_245.6-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.35.2-9ubuntu1 libx11-6_2:1.6.9-2ubuntu1 libx11-data_2:1.6.9-2ubuntu1 libxau6_1:1.0.9-0ubuntu1 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxml2_2.9.10+dfsg-5 libxnvctrl0_440.82-0ubuntu1 libzstd1_1.4.5+dfsg-3 linux-libc-dev_5.4.0-42.46 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.35.2-9ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 ocl-icd-libopencl1_2.2.12-4 openmpi-bin_4.0.3-6ubuntu2 openmpi-common_4.0.3-6ubuntu2 openssh-client_1:8.3p1-1 openssl_1.1.1f-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-phyml-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.12+nmu1 systemd_245.6-3ubuntu3 systemd-sysv_245.6-3ubuntu3 systemd-timesyncd_245.6-3ubuntu3 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.35.2-9ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jul 22 19:49:47 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phyml_3.3.20200621-1.dsc dpkg-source: info: extracting phyml in phyml-3.3.20200621 dpkg-source: info: unpacking phyml_3.3.20200621.orig.tar.gz dpkg-source: info: unpacking phyml_3.3.20200621-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sse_only_if_supported.patch dpkg-source: info: applying no-stdc++.patch dpkg-source: info: applying no-configure-ac-date.patch dpkg-source: info: applying fix_declaration_of_temp.patch dpkg-source: info: applying fix_wrong_initialisation_of_array.patch dpkg-source: info: applying no-march-native.patch dpkg-source: info: applying cross.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19626921 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19626921 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19626921 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package phyml dpkg-buildpackage: info: source version 3:3.3.20200621-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # save pdf from cleaning mv doc/phyml-manual.pdf . dh_auto_clean mv phyml-manual.pdf doc # remove temporary bin dir for phyml (see above hack) rm -rf debian/bin rm -rf doc/Makefile make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --as-needed configure.ac:16: installing './compile' configure.ac:14: installing './config.guess' configure.ac:14: installing './config.sub' configure.ac:5: installing './install-sh' configure.ac:5: installing './missing' src/Makefile.am: installing './depcomp' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # According to README you need different configure options to get different executables # Here we hack in a full build process for phyml executable # The hack includes saving the documentation from beeing cleaned up mv doc/phyml-manual.pdf . dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking dependency style of gcc... (cached) none configure: "Do not use MSSE = because not available on arch aarch64-unknown-linux-gnu" checking for log in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make -j4 "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o main.o main.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o utilities.o utilities.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o optimiz.o optimiz.c .: Building [phyml]. Version 3.3.3:3.3.20200621-1 :. gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o lk.o lk.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o bionj.o bionj.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o models.o models.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o free.o free.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o help.o help.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o simu.o simu.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o eigen.o eigen.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o pars.o pars.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o alrt.o alrt.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o interface.o interface.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3073:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3073 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3073:26: note: directive argument in the range [0, 2147483647] 3073 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from utilities.c:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o cl.o cl.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o spr.o spr.c utilities.c: In function ‘Are_Compatible’: utilities.c:4899:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 4899 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:4899:26: note: directive argument in the range [0, 2147483647] 4899 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from utilities.c:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o draw.o draw.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o stats.o stats.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o rates.o rates.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o mcmc.o mcmc.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o times.o times.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o tiporder.o tiporder.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o io.o io.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o make.o make.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o nexus.o nexus.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o init.o init.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o xml.o xml.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o date.o date.c io.c: In function ‘Print_Fp_Out’: io.c:2315:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2315:43: note: directive argument in the range [1, 2147483647] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from io.h:18, from io.c:13: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o sse.o sse.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o avx.o avx.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o tbe.o tbe.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o ancestral.o ancestral.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o mixt.o mixt.c gcc -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phyml main.o utilities.o optimiz.o lk.o bionj.o models.o free.o help.o simu.o eigen.o pars.o alrt.o interface.o cl.o spr.o draw.o stats.o rates.o mcmc.o times.o tiporder.o io.o make.o nexus.o init.o xml.o date.o sse.o avx.o tbe.o ancestral.o mixt.o -lm -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ mkdir -p /<>/debian/bin mv src/phyml /<>/debian/bin/phyml /usr/bin/make distclean make[2]: Entering directory '/<>' Making distclean in src make[3]: Entering directory '/<>/src' test -z "phyml" || rm -f phyml rm -f *.o rm -f *.tab.c test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f ./.deps/alrt.Po rm -f ./.deps/ancestral.Po rm -f ./.deps/avx.Po rm -f ./.deps/beagle_utils.Po rm -f ./.deps/bionj.Po rm -f ./.deps/checkpoint.Po rm -f ./.deps/cl.Po rm -f ./.deps/date.Po rm -f ./.deps/draw.Po rm -f ./.deps/eigen.Po rm -f ./.deps/free.Po rm -f ./.deps/geo.Po rm -f ./.deps/help.Po rm -f ./.deps/init.Po rm -f ./.deps/interface.Po rm -f ./.deps/invitee.Po rm -f ./.deps/io.Po rm -f ./.deps/lk.Po rm -f ./.deps/main.Po rm -f ./.deps/make.Po rm -f ./.deps/mcmc.Po rm -f ./.deps/mg.Po rm -f ./.deps/mixt.Po rm -f ./.deps/models.Po rm -f ./.deps/nexus.Po rm -f ./.deps/optimiz.Po rm -f ./.deps/pars.Po rm -f ./.deps/phyml_mpi-alrt.Po rm -f ./.deps/phyml_mpi-ancestral.Po rm -f ./.deps/phyml_mpi-avx.Po rm -f ./.deps/phyml_mpi-bionj.Po rm -f ./.deps/phyml_mpi-cl.Po rm -f ./.deps/phyml_mpi-date.Po rm -f ./.deps/phyml_mpi-draw.Po rm -f ./.deps/phyml_mpi-eigen.Po rm -f ./.deps/phyml_mpi-free.Po rm -f ./.deps/phyml_mpi-help.Po rm -f ./.deps/phyml_mpi-init.Po rm -f ./.deps/phyml_mpi-interface.Po rm -f ./.deps/phyml_mpi-io.Po rm -f ./.deps/phyml_mpi-lk.Po rm -f ./.deps/phyml_mpi-main.Po rm -f ./.deps/phyml_mpi-make.Po rm -f ./.deps/phyml_mpi-mcmc.Po rm -f ./.deps/phyml_mpi-mg.Po rm -f ./.deps/phyml_mpi-mixt.Po rm -f ./.deps/phyml_mpi-models.Po rm -f ./.deps/phyml_mpi-mpi_boot.Po rm -f ./.deps/phyml_mpi-nexus.Po rm -f ./.deps/phyml_mpi-optimiz.Po rm -f ./.deps/phyml_mpi-pars.Po rm -f ./.deps/phyml_mpi-rates.Po rm -f ./.deps/phyml_mpi-simu.Po rm -f ./.deps/phyml_mpi-spr.Po rm -f ./.deps/phyml_mpi-sse.Po rm -f ./.deps/phyml_mpi-stats.Po rm -f ./.deps/phyml_mpi-tbe.Po rm -f ./.deps/phyml_mpi-times.Po rm -f ./.deps/phyml_mpi-tiporder.Po rm -f ./.deps/phyml_mpi-utilities.Po rm -f ./.deps/phyml_mpi-xml.Po rm -f ./.deps/phyrex.Po rm -f ./.deps/rates.Po rm -f ./.deps/rrw.Po rm -f ./.deps/rw.Po rm -f ./.deps/simu.Po rm -f ./.deps/slfv.Po rm -f ./.deps/spr.Po rm -f ./.deps/sse.Po rm -f ./.deps/stats.Po rm -f ./.deps/tbe.Po rm -f ./.deps/times.Po rm -f ./.deps/tiporder.Po rm -f ./.deps/utilities.Po rm -f ./.deps/xml.Po rm -f Makefile make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' test -z "" || rm -f test . = "." || test -z "" || rm -f rm -f config.h stamp-h1 rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags rm -f cscope.out cscope.in.out cscope.po.out cscope.files make[3]: Leaving directory '/<>' rm -f config.status config.cache config.log configure.lineno config.status.lineno rm -f Makefile make[2]: Leaving directory '/<>' dh_auto_configure -- --enable-mpi ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mpi checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking dependency style of gcc... (cached) none configure: "Do not use MSSE = because not available on arch aarch64-unknown-linux-gnu" checking for log in -lm... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking for pdflatex... no checking for latex... no configure: WARNING: Documentation will not be built! checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking for floor... yes checking for pow... yes checking for rint... yes checking for sqrt... yes checking for strchr... yes checking for strstr... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for mpi-c... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -- LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make -j4 "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-main.o `test -f 'main.c' || echo './'`main.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-utilities.o `test -f 'utilities.c' || echo './'`utilities.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-optimiz.o `test -f 'optimiz.c' || echo './'`optimiz.c .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-1 :. gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-lk.o `test -f 'lk.c' || echo './'`lk.c In file included from lk.h:18, from lk.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from lk.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-bionj.o `test -f 'bionj.c' || echo './'`bionj.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-models.o `test -f 'models.c' || echo './'`models.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-free.o `test -f 'free.c' || echo './'`free.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-help.o `test -f 'help.c' || echo './'`help.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-simu.o `test -f 'simu.c' || echo './'`simu.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-eigen.o `test -f 'eigen.c' || echo './'`eigen.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-pars.o `test -f 'pars.c' || echo './'`pars.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-alrt.o `test -f 'alrt.c' || echo './'`alrt.c utilities.c: In function ‘Assign_State_With_Ambiguity’: utilities.c:3073:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 3073 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:3073:26: note: directive argument in the range [0, 2147483647] 3073 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from utilities.c:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-interface.o `test -f 'interface.c' || echo './'`interface.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-cl.o `test -f 'cl.c' || echo './'`cl.c In file included from cl.h:21, from cl.c:13: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/unistd.h:25, from cl.h:19, from cl.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | utilities.c: In function ‘Are_Compatible’: utilities.c:4899:29: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=] 4899 | sprintf(format,"%%%dd",stepsize); | ^~ utilities.c:4899:26: note: directive argument in the range [0, 2147483647] 4899 | sprintf(format,"%%%dd",stepsize); | ^~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from utilities.c:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 6 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-spr.o `test -f 'spr.c' || echo './'`spr.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-draw.o `test -f 'draw.c' || echo './'`draw.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-stats.o `test -f 'stats.c' || echo './'`stats.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-rates.o `test -f 'rates.c' || echo './'`rates.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mcmc.o `test -f 'mcmc.c' || echo './'`mcmc.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-times.o `test -f 'times.c' || echo './'`times.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-tiporder.o `test -f 'tiporder.c' || echo './'`tiporder.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mg.o `test -f 'mg.c' || echo './'`mg.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-io.o `test -f 'io.c' || echo './'`io.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-make.o `test -f 'make.c' || echo './'`make.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-nexus.o `test -f 'nexus.c' || echo './'`nexus.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-init.o `test -f 'init.c' || echo './'`init.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-xml.o `test -f 'xml.c' || echo './'`xml.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mixt.o `test -f 'mixt.c' || echo './'`mixt.c io.c: In function ‘Print_Fp_Out’: io.c:2315:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~ io.c:2315:43: note: directive argument in the range [1, 2147483647] 2315 | if (precision > 0) snprintf (format, 8, "%%.%df", precision); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from utilities.h:21, from io.h:18, from io.c:13: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 5 and 14 bytes into a destination of size 8 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-tbe.o `test -f 'tbe.c' || echo './'`tbe.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-date.o `test -f 'date.c' || echo './'`date.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-sse.o `test -f 'sse.c' || echo './'`sse.c In file included from sse.h:18, from sse.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from sse.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-avx.o `test -f 'avx.c' || echo './'`avx.c In file included from avx.h:18, from avx.c:14: utilities.h:18: warning: "_POSIX_C_SOURCE" redefined 18 | #define _POSIX_C_SOURCE 200112L | In file included from /usr/include/assert.h:35, from avx.c:13: /usr/include/features.h:310: note: this is the location of the previous definition 310 | # define _POSIX_C_SOURCE 199506L | gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-ancestral.o `test -f 'ancestral.c' || echo './'`ancestral.c gcc -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -c -o phyml_mpi-mpi_boot.o `test -f 'mpi_boot.c' || echo './'`mpi_boot.c gcc -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi -lm Done. make[4]: Leaving directory '/<>/src' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # move phyml binary to temporary dir inside debian/ # mkdir -p /<>/debian/bin mv src/phyml-mpi /<>/debian/bin/phyml-mpi mv phyml-manual.pdf doc make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' gcc -pthread -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -o phyml-mpi phyml_mpi-main.o phyml_mpi-utilities.o phyml_mpi-optimiz.o phyml_mpi-lk.o phyml_mpi-bionj.o phyml_mpi-models.o phyml_mpi-free.o phyml_mpi-help.o phyml_mpi-simu.o phyml_mpi-eigen.o phyml_mpi-pars.o phyml_mpi-alrt.o phyml_mpi-interface.o phyml_mpi-cl.o phyml_mpi-spr.o phyml_mpi-draw.o phyml_mpi-stats.o phyml_mpi-rates.o phyml_mpi-mcmc.o phyml_mpi-times.o phyml_mpi-tiporder.o phyml_mpi-mg.o phyml_mpi-io.o phyml_mpi-make.o phyml_mpi-nexus.o phyml_mpi-init.o phyml_mpi-xml.o phyml_mpi-mixt.o phyml_mpi-tbe.o phyml_mpi-date.o phyml_mpi-sse.o phyml_mpi-avx.o phyml_mpi-ancestral.o phyml_mpi-mpi_boot.o -lm -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi -lm .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-1 :. Done. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install make -j4 install DESTDIR=/<>/debian/phyml AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' .: Building [phyml-mpi]. Version 3.3.3:3.3.20200621-1 :. Done. make[4]: Entering directory '/<>/src' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/phyml/usr/bin' /usr/bin/install -c phyml-mpi '/<>/debian/phyml/usr/bin' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # install phyml binary we have kept safe above mkdir -p /<>/debian/phyml/usr/lib/phyml/bin mv /<>/debian/bin/* /<>/debian/phyml/usr/lib/phyml/bin chrpath --delete debian/phyml/usr/lib/phyml/bin/phyml* make[1]: Leaving directory '/<>' dh_install -a debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs mv /<>/debian/phyml/usr/share/doc/phyml/phyml-manual.pdf /<>/debian/phyml/usr/share/doc/phyml/phyml_manual.pdf make[1]: Leaving directory '/<>' dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/*/usr/share/doc -name "*.nxs" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.xml" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.mat" -exec chmod -x \{\} \; find debian/*/usr/share/doc -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a debian/rules override_dh_dwz make[1]: Entering directory '/<>' echo "Do not run dh_dwz" Do not run dh_dwz make[1]: Leaving directory '/<>' dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing phyml (in debian/phyml); do_strip: , oemstrip: pkgstriptranslations: processing phyml-dbgsym (in debian/.debhelper/phyml/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/phyml/DEBIAN/control, package phyml, directory debian/phyml pkgstripfiles: Truncating usr/share/doc/phyml/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package phyml ... pkgstripfiles: processing control file: debian/.debhelper/phyml/dbgsym-root/DEBIAN/control, package phyml-dbgsym, directory debian/.debhelper/phyml/dbgsym-root pkgstripfiles: No PNG files. dpkg-deb: building package 'phyml-dbgsym' in 'debian/.debhelper/scratch-space/build-phyml/phyml-dbgsym_3.3.20200621-1_arm64.deb'. dpkg-deb: building package 'phyml' in '../phyml_3.3.20200621-1_arm64.deb'. Renaming phyml-dbgsym_3.3.20200621-1_arm64.deb to phyml-dbgsym_3.3.20200621-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../phyml_3.3.20200621-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200723-0515 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyml_3.3.20200621-1_arm64.changes: ----------------------------------- Format: 1.8 Date: Wed, 22 Jul 2020 16:25:36 +0000 Source: phyml Binary: phyml Architecture: arm64 Version: 3:3.3.20200621-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Shayan Doust Description: phyml - Phylogenetic estimation using Maximum Likelihood Closes: 957679 Changes: phyml (3:3.3.20200621-1) unstable; urgency=medium . * Team upload * New upstream version 3.3.20200621 (Closes: #957679) * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 8501e2b3472f0608ea389e1c7f05426e9edfbb21 35988 phyml-dbgsym_3.3.20200621-1_arm64.ddeb ab8bcb7ecade2a1656ece3342edf6a087375c014 6965 phyml_3.3.20200621-1_arm64.buildinfo 48d75347037838d69e33d1f408a8df71d79e03ed 1726920 phyml_3.3.20200621-1_arm64.deb Checksums-Sha256: 2f3288a7ac913d514fe4632bca2ccdec03f60f10bfc5e222606054e04f0df199 35988 phyml-dbgsym_3.3.20200621-1_arm64.ddeb be50859150a3228088cc93ce2a26cb4d62c66cd46b12944a30a6f30a212902d7 6965 phyml_3.3.20200621-1_arm64.buildinfo 84b9c26f45e15918fd3586c217b26864888ed139f4377adf55be8ca6bd9b1fc4 1726920 phyml_3.3.20200621-1_arm64.deb Files: aae71613f04bea90607f96afdf8f0999 35988 debug optional phyml-dbgsym_3.3.20200621-1_arm64.ddeb 0c173560cba8e5862c534d4d020e0460 6965 science optional phyml_3.3.20200621-1_arm64.buildinfo f7614cacc53770786e7f18eac019272f 1726920 science optional phyml_3.3.20200621-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyml_3.3.20200621-1_arm64.deb ------------------------------ new debian package, version 2.0. size 1726920 bytes: control archive=1936 bytes. 1757 bytes, 32 lines control 1773 bytes, 25 lines md5sums Package: phyml Version: 3:3.3.20200621-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5690 Depends: libc6 (>= 2.29), libopenmpi3 (>= 4.0.3), openmpi-bin Section: science Priority: optional Homepage: http://www.atgc-montpellier.fr/phyml Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can be analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. . This package also includes PhyTime. drwxr-xr-x root/root 0 2020-07-22 16:25 ./ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/bin/ -rwxr-xr-x root/root 579 2020-07-22 16:25 ./usr/bin/phyml -rwxr-xr-x root/root 1504320 2020-07-22 16:25 ./usr/bin/phyml-mpi drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/lib/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/lib/phyml/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/lib/phyml/bin/ -rwxr-xr-x root/root 1496128 2020-07-22 16:25 ./usr/lib/phyml/bin/phyml -rwxr-xr-x root/root 1504320 2020-07-22 16:25 ./usr/lib/phyml/bin/phyml-mpi drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/doc-base/ -rw-r--r-- root/root 202 2020-07-22 16:25 ./usr/share/doc-base/phyml drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/doc/phyml/ -rw-r--r-- root/root 2446 2020-07-22 16:25 ./usr/share/doc/phyml/README.Debian -rw-r--r-- root/root 1207 2020-07-22 16:25 ./usr/share/doc/phyml/changelog.Debian.gz -rw-r--r-- root/root 1490 2020-07-22 16:25 ./usr/share/doc/phyml/copyright drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/doc/phyml/examples/ -rw-r--r-- root/root 20905 2020-07-22 16:25 ./usr/share/doc/phyml/examples/example.nex drwxr-xr-x root/root 0 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/ -rw-r--r-- root/root 1900 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/X1.mat -rw-r--r-- root/root 1899 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/X2.mat -rw-r--r-- root/root 1893 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/X3.mat -rw-r--r-- root/root 1895 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/X4.mat -rw-r--r-- root/root 1994 2020-07-14 09:31 ./usr/share/doc/phyml/examples/lg4x/lg4x.xml -rw-r--r-- root/root 2175 2020-07-14 09:31 ./usr/share/doc/phyml/examples/nexus_example.nxs -rwxr-xr-x root/root 60771 2020-07-14 09:31 ./usr/share/doc/phyml/examples/nucleic drwxr-xr-x root/root 0 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phyrex/ -rw-r--r-- root/root 9115 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phyrex/flu.xml -rw-r--r-- root/root 70310 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phyrex/h1n1.nxs -rw-r--r-- root/root 1784 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phyrex/usa_coord.txt drwxr-xr-x root/root 0 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phytime/ -rw-r--r-- root/root 2248 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phytime/dating_example.xml -rw-r--r-- root/root 100171 2020-07-14 09:31 ./usr/share/doc/phyml/examples/phytime/seq.txt -rwxr-xr-x root/root 25990 2020-07-14 09:31 ./usr/share/doc/phyml/examples/proteic -rw-r--r-- root/root 976126 2020-07-14 09:31 ./usr/share/doc/phyml/phyml_manual.pdf -rw-r--r-- root/root 1257 2020-07-22 16:25 ./usr/share/doc/phyml/run-unit-test drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/man/ drwxr-xr-x root/root 0 2020-07-22 16:25 ./usr/share/man/man1/ -rw-r--r-- root/root 2899 2020-07-22 16:25 ./usr/share/man/man1/phyml.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 19844 Build-Time: 120 Distribution: groovy-proposed Host Architecture: arm64 Install-Time: 23 Job: phyml_3.3.20200621-1.dsc Machine Architecture: arm64 Package: phyml Package-Time: 145 Source-Version: 3:3.3.20200621-1 Space: 19844 Status: successful Version: 3:3.3.20200621-1 -------------------------------------------------------------------------------- Finished at 20200723-0515 Build needed 00:02:25, 19844k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19626921 Scanning for processes to kill in build PACKAGEBUILD-19626921