Ubuntu
physamp package

physamp 1.1.0-3 source package in Ubuntu

Changelog

physamp (1.1.0-3) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <email address hidden>  Mon, 18 Oct 2021 15:04:43 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Kinetic release universe misc
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
physamp_1.1.0-3.dsc 2.0 KiB c4a74305e44a4bf8c8554bf51aeda1aed3820eee3bcf1dee98fe5f6cae1c7980
physamp_1.1.0.orig.tar.gz 236.2 KiB 0c687e7f46d6d5732a3ad6f029a0169667921101294a9fb5efaae9adfc397ae8
physamp_1.1.0-3.debian.tar.xz 3.7 KiB dfa561558d085b7726bc6d6acde4b874c67fca105c367966b034469bf729f4ff

Available diffs

No changes file available.

Binary packages built by this source

physamp: sample sequence alignment corresponding to phylogeny

 The PhySamp package currently contains two programs: bppphysamp, which
 samples sequences according to their similarity, and bppalnoptim, which
 samples a sequence alignment by removing sequences in order to maximize
 the number of sites suitable for a given analysis. The bppalnoptim
 program has three running modes:
  * Interactive: the user will be iteratively proposed a set of choices
    for sequence removal, with their corresponding site gains. The
    procedure stops when the user does not want to remove more sequences,
    and the resulting filtered alignment is written.
  * Automatic: the user enters an a priori criterion for stopping
    the filtering procedure (for instance a minimum number of
    sequences to keep).
  * Diagnostic: this mode allows one to plot the trade-off curve, by
    showing the site gain as a function of the number of removed
    sequences.

physamp-dbgsym: debug symbols for physamp