https://launchpad.net/ubuntu/+source/phyx/1.01+ds-2build1/+build/20274011 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-009 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:02:05 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 10 Nov 13:33:40 ntpdate[1741]: adjust time server 10.211.37.1 offset -0.000258 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20274011 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20274011 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20274011 Starting target for build PACKAGEBUILD-20274011 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20274011 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20274011 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20274011 Updating target for build PACKAGEBUILD-20274011 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1324 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5332 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [221 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [90.1 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [1802 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [656 kB] Fetched 23.1 MB in 4s (5233 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu coreutils cpp-10 fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 libitm1 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 69 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 216 MB of archives. After this operation, 816 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6-dev s390x 2.32-0ubuntu4 [1744 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-dev-bin s390x 2.32-0ubuntu4 [29.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x linux-libc-dev s390x 5.8.0-26.27 [1165 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-dev s390x 1.2.6-3 [190 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc3 s390x 1.2.6-3 [75.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcc1-0 s390x 10.2.0-16ubuntu1 [39.4 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10-base s390x 10.2.0-16ubuntu1 [19.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-s1 s390x 10.2.0-16ubuntu1 [30.4 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgomp1 s390x 10.2.0-16ubuntu1 [115 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libitm1 s390x 10.2.0-16ubuntu1 [28.6 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libatomic1 s390x 10.2.0-16ubuntu1 [8368 B] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libasan6 s390x 10.2.0-16ubuntu1 [351 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libubsan1 s390x 10.2.0-16ubuntu1 [155 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x g++-10 s390x 10.2.0-16ubuntu1 [63.1 MB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++-10-dev s390x 10.2.0-16ubuntu1 [1735 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-10-dev s390x 10.2.0-16ubuntu1 [779 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10 s390x 10.2.0-16ubuntu1 [63.9 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x cpp-10 s390x 10.2.0-16ubuntu1 [56.7 MB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++6 s390x 10.2.0-16ubuntu1 [519 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf-nobfd0 s390x 2.35.1-2ubuntu1 [50.4 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf0 s390x 2.35.1-2ubuntu1 [49.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbinutils s390x 2.35.1-2ubuntu1 [338 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-common s390x 2.35.1-2ubuntu1 [212 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils s390x 2.35.1-2ubuntu1 [3344 B] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-s390x-linux-gnu s390x 2.35.1-2ubuntu1 [1691 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6 s390x 2.32-0ubuntu4 [2334 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x bash s390x 5.1~rc2-1ubuntu1 [761 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x coreutils s390x 8.32-4ubuntu1 [1457 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x grep s390x 3.6-1 [161 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncursesw6 s390x 6.2+20200918-1 [136 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses6 s390x 6.2+20200918-1 [106 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtinfo6 s390x 6.2+20200918-1 [92.5 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-bin s390x 6.2+20200918-1 [176 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-modules-5.32 all 5.32.0-4 [2753 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libperl5.32 s390x 5.32.0-4 [3940 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl s390x 5.32.0-4 [225 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-base s390x 5.32.0-4 [1574 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libdebconfclient0 s390x 0.255ubuntu1 [6064 B] Get:44 http://ftpmaster.internal/ubuntu hirsute/main s390x base-passwd s390x 3.5.48 [48.5 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-bin s390x 2.32-0ubuntu4 [589 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-base all 6.2+20200918-1 [18.7 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcrypt20 s390x 1.8.7-2ubuntu1 [393 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd-timesyncd s390x 246.6-2ubuntu1 [27.2 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd-sysv s390x 246.6-2ubuntu1 [10.3 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libapparmor1 s390x 3.0.0-0ubuntu3 [36.6 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit1 s390x 1:2.8.5-3ubuntu2 [38.1 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x libidn2-0 s390x 2.3.0-2 [51.7 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libip4tc2 s390x 1.8.5-3ubuntu3 [20.0 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main s390x libseccomp2 s390x 2.4.3-1ubuntu5 [56.3 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd s390x 246.6-2ubuntu1 [4293 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libsystemd0 s390x 246.6-2ubuntu1 [292 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libudev1 s390x 246.6-2ubuntu1 [73.2 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x libapt-pkg6.0 s390x 2.1.11 [848 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x apt s390x 2.1.11 [1285 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build1 [75.3 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build1 [88.2 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x readline-common all 8.1~rc2-2 [54.1 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libreadline8 s390x 8.1~rc2-2 [143 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2020d-1ubuntu1 [293 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libfakeroot s390x 1.25.3-1 [27.5 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x fakeroot s390x 1.25.3-1 [62.7 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main s390x libnpth0 s390x 1.6-3 [8048 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 216 MB in 18s (11.7 MB/s) (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:s390x (1:4.4.17-1ubuntu1) ... (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.32-0ubuntu4_s390x.deb ... Unpacking libc6-dev:s390x (2.32-0ubuntu4) over (2.32-0ubuntu3) ... Preparing to unpack .../1-libc-dev-bin_2.32-0ubuntu4_s390x.deb ... Unpacking libc-dev-bin (2.32-0ubuntu4) over (2.32-0ubuntu3) ... Preparing to unpack .../2-linux-libc-dev_5.8.0-26.27_s390x.deb ... Unpacking linux-libc-dev:s390x (5.8.0-26.27) over (5.8.0-25.26) ... Preparing to unpack .../3-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) over (1.2.6-1build1) ... Preparing to unpack .../4-libtirpc-dev_1.2.6-3_s390x.deb ... 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Selecting previously unselected package libperl5.32:s390x. Preparing to unpack .../libperl5.32_5.32.0-4_s390x.deb ... Unpacking libperl5.32:s390x (5.32.0-4) ... Preparing to unpack .../perl-base_5.32.0-4_s390x.deb ... Unpacking perl-base (5.32.0-4) over (5.30.3-4) ... Setting up perl-base (5.32.0-4) ... (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.255ubuntu1_s390x.deb ... Unpacking libdebconfclient0:s390x (0.255ubuntu1) over (0.252ubuntu1) ... Setting up libdebconfclient0:s390x (0.255ubuntu1) ... (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.48_s390x.deb ... Unpacking base-passwd (3.5.48) over (3.5.47) ... Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../libc-bin_2.32-0ubuntu4_s390x.deb ... Unpacking libc-bin (2.32-0ubuntu4) over (2.32-0ubuntu3) ... Setting up libc-bin (2.32-0ubuntu4) ... (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20200918-1_all.deb ... Unpacking ncurses-base (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-base (6.2+20200918-1) ... (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... 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Setting up libgomp1:s390x (10.2.0-16ubuntu1) ... Setting up libcap2:s390x (1:2.44-1) ... Setting up libfakeroot:s390x (1.25.3-1) ... Setting up libasan6:s390x (10.2.0-16ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 10 13:34:41 UTC 2020. Universal Time is now: Tue Nov 10 13:34:41 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:s390x (6.2+20200918-1) ... Setting up libmpc3:s390x (1.2.0-1) ... Setting up libatomic1:s390x (10.2.0-16ubuntu1) ... Setting up libncursesw6:s390x (6.2+20200918-1) ... Setting up libperl5.32:s390x (5.32.0-4) ... Setting up libubsan1:s390x (10.2.0-16ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.17-1ubuntu1) ... Setting up libbinutils:s390x (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu4) ... Setting up readline-common (8.1~rc2-2) ... Setting up libcc1-0:s390x (10.2.0-16ubuntu1) ... Setting up cpp-10 (10.2.0-16ubuntu1) ... Setting up libitm1:s390x (10.2.0-16ubuntu1) ... Setting up libctf0:s390x (2.35.1-2ubuntu1) ... Setting up libtirpc3:s390x (1.2.6-3) ... Setting up binutils-s390x-linux-gnu (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:s390x (10.2.0-16ubuntu1) ... Setting up libreadline8:s390x (8.1~rc2-2) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up perl (5.32.0-4) ... Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up gcc-10 (10.2.0-16ubuntu1) ... Setting up libc6-dev:s390x (2.32-0ubuntu4) ... Setting up libstdc++-10-dev:s390x (10.2.0-16ubuntu1) ... Setting up g++-10 (10.2.0-16ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20274011 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20274011 --arch=s390x --dist=hirsute-proposed --nolog phyx_1.01+ds-2build1.dsc Initiating build PACKAGEBUILD-20274011 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:02:05 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-009.buildd +==============================================================================+ | phyx 1.01+ds-2build1 (s390x) Tue, 10 Nov 2020 13:34:42 +0000 | +==============================================================================+ Package: phyx Version: 1.01+ds-2build1 Source Version: 1.01+ds-2build1 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20274011/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- phyx_1.01+ds-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/phyx-3RcYQD/phyx-1.01+ds' with '<>' I: NOTICE: Log filtering will replace 'build/phyx-3RcYQD' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-gcu5fB/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-gcu5fB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gcu5fB/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-gcu5fB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gcu5fB/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-gcu5fB/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 860 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-gcu5fB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [860 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14686 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), python3, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libatlas-cpp-0.6-dev, libarmadillo-dev Filtered Build-Depends: debhelper-compat (= 12), python3, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libatlas-cpp-0.6-dev, libarmadillo-dev dpkg-deb: building package 'sbuild-build-depends-phyx-dummy' in '/<>/resolver-gcu5fB/apt_archive/sbuild-build-depends-phyx-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-phyx-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-gcu5fB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gcu5fB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-gcu5fB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gcu5fB/apt_archive ./ Sources [538 B] Get:5 copy:/<>/resolver-gcu5fB/apt_archive ./ Packages [618 B] Fetched 2119 B in 0s (173 kB/s) Reading package lists... Reading package lists... Install phyx build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo10 libarpack2 libarpack2-dev libatlas-cpp-0.6-3 libatlas-cpp-0.6-dev libatlas-cpp-0.6-tools libblas-dev libblas3 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic-mgc libmagic1 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libitpp-dev libatlas-cpp-doc liblapack-doc libhdf5-doc libsuperlu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo10 libarpack2 libarpack2-dev libatlas-cpp-0.6-3 libatlas-cpp-0.6-dev libatlas-cpp-0.6-tools libblas-dev libblas3 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libmagic-mgc libmagic1 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal sbuild-build-depends-phyx-dummy zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After this operation, 153 MB of additional disk space will be used. 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hirsute/main s390x dh-autoreconf all 19 [16.1 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:35 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x dwz s390x 0.13-5 [146 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu 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hirsute/universe s390x libhdf5-hl-cpp-100 s390x 1.10.6+repack-2 [9892 B] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu4 [166 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-turbo8 s390x 2.0.3-0ubuntu2 [102 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-turbo8-dev s390x 2.0.3-0ubuntu2 [214 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:66 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:67 http://ftpmaster.internal/ubuntu hirsute/universe s390x libaec-dev s390x 1.0.4-1 [17.5 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/universe s390x libhdf5-dev s390x 1.10.6+repack-2 [2264 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x libsuperlu-dev s390x 5.2.2+dfsg1-2 [19.1 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x libarmadillo-dev s390x 1:10.1.0+dfsg-2 [382 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/universe s390x libatlas-cpp-0.6-3 s390x 0.6.4-3 [142 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main s390x pkg-config s390x 0.29.2-1ubuntu1 [45.0 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/universe s390x libatlas-cpp-0.6-tools s390x 0.6.4-3 [16.6 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/universe s390x libatlas-cpp-0.6-dev s390x 0.6.4-3 [34.4 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/universe s390x libnlopt0 s390x 2.6.1-8ubuntu3 [160 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/universe s390x libnlopt-dev s390x 2.6.1-8ubuntu3 [29.6 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/universe s390x libnlopt-cxx0 s390x 2.6.1-8ubuntu3 [182 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/universe s390x libnlopt-cxx-dev s390x 2.6.1-8ubuntu3 [11.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.1 MB in 1s (31.5 MB/s) Selecting previously unselected package libpython3.8-minimal:s390x. 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Setting up bsdextrautils (2.36-3ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-2) ... Setting up libicu67:s390x (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.66.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libmagic1:s390x (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up libnlopt0:s390x (2.6.1-8ubuntu3) ... Setting up file (1:5.38-5) ... Setting up libaec0:s390x (1.0.4-1) ... Setting up libatlas-cpp-0.6-3:s390x (0.6.4-3) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up libjpeg-turbo8:s390x (2.0.3-0ubuntu2) ... Setting up libgfortran5:s390x (10.2.0-16ubuntu1) ... Setting up libnlopt-cxx0:s390x (2.6.1-8ubuntu3) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libpython3.8-stdlib:s390x (3.8.6-1) ... Setting up libnlopt-dev:s390x (2.6.1-8ubuntu3) ... Setting up libatlas-cpp-0.6-tools (0.6.4-3) ... Setting up python3.8 (3.8.6-1) ... Setting up libelf1:s390x (0.182-1) ... Setting up libxml2:s390x (2.9.10+dfsg-6.2) ... Setting up libblas-dev:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up libsz2:s390x (1.0.4-1) ... Setting up libpython3-stdlib:s390x (3.8.6-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libjpeg-turbo8-dev:s390x (2.0.3-0ubuntu2) ... Setting up liblapack3:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libtool (2.4.6-14) ... Setting up libaec-dev:s390x (1.0.4-1) ... Setting up libarpack2:s390x (3.7.0-3) ... Setting up libsuperlu5:s390x (5.2.2+dfsg1-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.6-1) ... Setting up libnlopt-cxx-dev:s390x (2.6.1-8ubuntu3) ... Setting up liblapack-dev:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libatlas-cpp-0.6-dev:s390x (0.6.4-3) ... Setting up libhdf5-103-1:s390x (1.10.6+repack-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libhdf5-cpp-103-1:s390x (1.10.6+repack-2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libsuperlu-dev:s390x (5.2.2+dfsg1-2) ... Setting up libhdf5-hl-100:s390x (1.10.6+repack-2) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libarmadillo10 (1:10.1.0+dfsg-2) ... Setting up libarpack2-dev:s390x (3.7.0-3) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhdf5-hl-cpp-100:s390x (1.10.6+repack-2) ... Setting up libhdf5-fortran-102:s390x (1.10.6+repack-2) ... Setting up libhdf5-hl-fortran-100:s390x (1.10.6+repack-2) ... Setting up po-debconf (1.0.21) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/s390x-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libarmadillo-dev (1:10.1.0+dfsg-2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up sbuild-build-depends-phyx-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-122-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-16ubuntu1 gcc-10_10.2.0-16ubuntu1 libc6-dev_2.32-0ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-s390x-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-16ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-16ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-16ubuntu1 gcc-10-base_10.2.0-16ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu3 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libarmadillo-dev_1:10.1.0+dfsg-2 libarmadillo10_1:10.1.0+dfsg-2 libarpack2_3.7.0-3 libarpack2-dev_3.7.0-3 libasan6_10.2.0-16ubuntu1 libassuan0_2.5.3-7.1 libatlas-cpp-0.6-3_0.6.4-3 libatlas-cpp-0.6-dev_0.6.4-3 libatlas-cpp-0.6-tools_0.6.4-3 libatomic1_10.2.0-16ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblas-dev_3.9.0-3ubuntu1 libblas3_3.9.0-3ubuntu1 libblkid1_2.36-3ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu4 libc-dev-bin_2.32-0ubuntu4 libc6_2.32-0ubuntu4 libc6-dev_2.32-0ubuntu4 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcc1-0_10.2.0-16ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16ubuntu1 libgcc-s1_10.2.0-16ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-16ubuntu1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-16ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-2 libip4tc2_1.8.5-3ubuntu3 libisl22_0.22.1-1 libitm1_10.2.0-16ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu2 libjpeg-turbo8-dev_2.0.3-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblapack-dev_3.9.0-3ubuntu1 liblapack3_3.9.0-3ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnlopt-cxx-dev_2.6.1-8ubuntu3 libnlopt-cxx0_2.6.1-8ubuntu3 libnlopt-dev_2.6.1-8ubuntu3 libnlopt0_2.6.1-8ubuntu3 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpython3-stdlib_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libreadline8_8.1~rc2-2 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 libsub-override-perl_0.09-2 libsuperlu-dev_5.2.2+dfsg1-2 libsuperlu5_5.2.2+dfsg1-2 libsystemd0_246.6-2ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.32.0-4 perl-base_5.32.0-4 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.8.6-1 python3-minimal_3.8.6-1 python3.8_3.8.6-1 python3.8-minimal_3.8.6-1 readline-common_8.1~rc2-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-phyx-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 10 11:03:02 2020 UTC gpgv: using RSA key EE240A052A231AD8925841D79B8EC849D5EF70ED gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./phyx_1.01+ds-2build1.dsc dpkg-source: info: extracting phyx in /<>/phyx-1.01+ds dpkg-source: info: unpacking phyx_1.01+ds.orig.tar.xz dpkg-source: info: unpacking phyx_1.01+ds-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying link_lnlopt.patch dpkg-source: info: applying gcc10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20274011 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20274011 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20274011 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package phyx dpkg-buildpackage: info: source version 1.01+ds-2build1 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/phyx-1.01+ds' rm -rf src/phyx.logfile if [ -r src/Makefile ]; then \ /usr/bin/make -C src distclean; \ fi make[1]: Leaving directory '/<>/phyx-1.01+ds' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src cd src && ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for fabs in -lm... yes checking for nlopt_version in -lnlopt... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking nlopt.h usability... yes checking nlopt.h presence... yes checking for nlopt.h... yes checking for library containing wrapper_sgesv_... -larmadillo checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for floor... yes checking for pow... yes checking for sqrt... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 make[1]: Entering directory '/<>/phyx-1.01+ds/src' g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "utils.d" -o "utils.o" "utils.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "log.d" -o "log.o" "log.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "node.d" -o "node.o" "node.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tree.d" -o "tree.o" "tree.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tree_reader.d" -o "tree_reader.o" "tree_reader.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tree_utils.d" -o "tree_utils.o" "tree_utils.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "sequence.d" -o "sequence.o" "sequence.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_reader.d" -o "seq_reader.o" "seq_reader.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_utils.d" -o "seq_utils.o" "seq_utils.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_models.d" -o "seq_models.o" "seq_models.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "pairwise_alignment.d" -o "pairwise_alignment.o" "pairwise_alignment.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "superdouble.d" -o "superdouble.o" "superdouble.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_mrca.d" -o "main_mrca.o" "main_mrca.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_mrca_cut.d" -o "main_mrca_cut.o" "main_mrca_cut.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_mrca_name.d" -o "main_mrca_name.o" "main_mrca_name.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_consq.d" -o "main_consq.o" "main_consq.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "bd_sim.d" -o "bd_sim.o" "bd_sim.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_bd_sim.d" -o "main_bd_sim.o" "main_bd_sim.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tree_info.d" -o "tree_info.o" "tree_info.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_lstr.d" -o "main_lstr.o" "main_lstr.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_info.d" -o "seq_info.o" "seq_info.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_lssq.d" -o "main_lssq.o" "main_lssq.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "upgma.d" -o "upgma.o" "upgma.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_upgma.d" -o "main_upgma.o" "main_upgma.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "clsq.d" -o "clsq.o" "clsq.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_clsq.d" -o "main_clsq.o" "main_clsq.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "clean_tree.d" -o "clean_tree.o" "clean_tree.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_cltr.d" -o "main_cltr.o" "main_cltr.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_s2fa.d" -o "main_s2fa.o" "main_s2fa.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_s2phy.d" -o "main_s2phy.o" "main_s2phy.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_s2nex.d" -o "main_s2nex.o" "main_s2nex.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_fqfilt.d" -o "main_fqfilt.o" "main_fqfilt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_revcomp.d" -o "main_revcomp.o" "main_revcomp.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "edlib.d" -o "edlib.o" "edlib.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_nw.d" -o "main_nw.o" "main_nw.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_sw.d" -o "main_sw.o" "main_sw.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_sample.d" -o "seq_sample.o" "seq_sample.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_boot.d" -o "main_boot.o" "main_boot.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "concat.d" -o "concat.o" "concat.cpp" In function ‘int obtainAlignment(const unsigned char*, const unsigned char*, int, const unsigned char*, const unsigned char*, int, int, int, unsigned char**, int*)’, inlined from ‘EdlibAlignResult edlibAlign(const char*, int, const char*, int, EdlibAlignConfig)’ at edlib.cpp:203:28: edlib.cpp:1099:45: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 1099 | *alignment = (unsigned char*) malloc((*alignmentLength) * sizeof(unsigned char)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/cstdlib:75, from edlib.cpp:4: /usr/include/stdlib.h: In function ‘EdlibAlignResult edlibAlign(const char*, int, const char*, int, EdlibAlignConfig)’: /usr/include/stdlib.h:539:14: note: in a call to allocation function ‘void* malloc(size_t)’ declared here 539 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_concat.d" -o "main_concat.o" "main_concat.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "sstat.d" -o "sstat.o" "sstat.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_sstat.d" -o "main_sstat.o" "main_sstat.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "recode.d" -o "recode.o" "recode.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_recode.d" -o "main_recode.o" "main_recode.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_bp.d" -o "main_bp.o" "main_bp.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_t2new.d" -o "main_t2new.o" "main_t2new.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_t2nex.d" -o "main_t2nex.o" "main_t2nex.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rr.d" -o "main_rr.o" "main_rr.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "aa2cdn.d" -o "aa2cdn.o" "aa2cdn.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_aa2cdn.d" -o "main_aa2cdn.o" "main_aa2cdn.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tlate.d" -o "tlate.o" "tlate.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_tlate.d" -o "main_tlate.o" "main_tlate.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rms.d" -o "main_rms.o" "main_rms.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rmt.d" -o "main_rmt.o" "main_rmt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_trt.d" -o "main_trt.o" "main_trt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rmk.d" -o "main_rmk.o" "main_rmk.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "nj.d" -o "nj.o" "nj.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_nj.d" -o "main_nj.o" "main_nj.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "log_manip.d" -o "log_manip.o" "log_manip.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_log.d" -o "main_log.o" "main_log.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "vcf_reader.d" -o "vcf_reader.o" "vcf_reader.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_vcf2fa.d" -o "main_vcf2fa.o" "main_vcf2fa.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "relabel.d" -o "relabel.o" "relabel.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rlt.d" -o "main_rlt.o" "main_rlt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_rls.d" -o "main_rls.o" "main_rls.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "tscale.d" -o "tscale.o" "tscale.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_tscale.d" -o "main_tscale.o" "main_tscale.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "rate_model.d" -o "rate_model.o" "rate_model.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "state_reconstructor.d" -o "state_reconstructor.o" "state_reconstructor.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "optimize_state_reconstructor_nlopt.d" -o "optimize_state_reconstructor_nlopt.o" "optimize_state_reconstructor_nlopt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "optimize_state_reconstructor_periods_nlopt.d" -o "optimize_state_reconstructor_periods_nlopt.o" "optimize_state_reconstructor_periods_nlopt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "branch_segment.d" -o "branch_segment.o" "branch_segment.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "cont_models.d" -o "cont_models.o" "cont_models.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "seq_gen.d" -o "seq_gen.o" "seq_gen.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_strec.d" -o "main_strec.o" "main_strec.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_seqgen.d" -o "main_seqgen.o" "main_seqgen.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_ssort.d" -o "main_ssort.o" "main_ssort.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_contrates.d" -o "main_contrates.o" "main_contrates.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "optimize_cont_models_nlopt.d" -o "optimize_cont_models_nlopt.o" "optimize_cont_models_nlopt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_tcol.d" -o "main_tcol.o" "main_tcol.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_tcomb.d" -o "main_tcomb.o" "main_tcomb.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "collapse_tree.d" -o "collapse_tree.o" "collapse_tree.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_colt.d" -o "main_colt.o" "main_colt.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "bd_fit.d" -o "bd_fit.o" "bd_fit.cpp" g++ -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -c -fmessage-length=0 -MMD -MP -MF "main_bd_fit.d" -o "main_bd_fit.o" "main_bd_fit.cpp" building pxmrca g++ -o "pxmrca" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_mrca.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxmrcacut g++ -o "pxmrcacut" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_mrca_cut.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxmrcaname g++ -o "pxmrcaname" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_mrca_name.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxconsq g++ -o "pxconsq" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_consq.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxbdsim g++ -o "pxbdsim" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize bd_sim.o main_bd_sim.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxlstr g++ -o "pxlstr" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize tree_info.o main_lstr.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o bulding pxlssq g++ -o "pxlssq" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize seq_info.o main_lssq.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxupgma g++ -o "pxupgma" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize upgma.o main_upgma.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxclsq g++ -o "pxclsq" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize clsq.o main_clsq.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxcltr g++ -o "pxcltr" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize clean_tree.o main_cltr.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxs2fa g++ -o "pxs2fa" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_s2fa.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxs2phy g++ -o "pxs2phy" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_s2phy.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxs2nex g++ -o "pxs2nex" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_s2nex.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxfqfilt g++ -o "pxfqfilt" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_fqfilt.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrevcomp g++ -o "pxrevcomp" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_revcomp.o edlib.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxnw g++ -o "pxnw" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_nw.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxsw g++ -o "pxsw" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_sw.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxboot g++ -o "pxboot" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize seq_sample.o main_boot.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxcat g++ -o "pxcat" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize concat.o main_concat.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxsstat g++ -o "pxsstat" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize sstat.o main_sstat.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrecode g++ -o "pxrecode" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize recode.o main_recode.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxbp g++ -o "pxbp" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_bp.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxt2new g++ -o "pxt2new" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_t2new.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxt2nex g++ -o "pxt2nex" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_t2nex.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrr g++ -o "pxrr" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_rr.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxaa2cdn g++ -o "pxaa2cdn" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize aa2cdn.o main_aa2cdn.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxtlate g++ -o "pxtlate" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize tlate.o main_tlate.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrms g++ -o "pxrms" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_rms.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrmt g++ -o "pxrmt" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_rmt.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxtrt g++ -o "pxtrt" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_trt.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrmk g++ -o "pxrmk" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_rmk.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxnj g++ -o "pxnj" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize nj.o main_nj.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxlog g++ -o "pxlog" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize log_manip.o main_log.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxvcf2fa g++ -o "pxvcf2fa" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize vcf_reader.o main_vcf2fa.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrlt g++ -o "pxrlt" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize relabel.o main_rlt.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxrls g++ -o "pxrls" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize relabel.o main_rls.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxtscale g++ -o "pxtscale" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize tscale.o main_tscale.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxstrec g++ -o "pxstrec" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_strec.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -llapack -lblas -lpthread -lm -lnlopt -larmadillo -lnlopt_cxx -lnlopt # -lgfortran building pxseqgen g++ -o "pxseqgen" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_seqgen.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -llapack -lblas -lpthread -lm -lnlopt -larmadillo -lnlopt_cxx -lnlopt building pxssort g++ -o "pxssort" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_ssort.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxtcol g++ -o "pxtcol" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_tcol.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxtcomb g++ -o "pxtcomb" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_tcomb.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxcolt g++ -o "pxcolt" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize collapse_tree.o main_colt.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o building pxbdfit g++ -o "pxbdfit" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize bd_fit.o main_bd_fit.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -llapack -lblas -lpthread -lm -lnlopt -larmadillo building pxcontrates g++ -o "pxcontrates" -O3 -std=c++11 -fopenmp -DOMP -ffast-math -ftree-vectorize main_contrates.o optimize_cont_models_nlopt.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o ./utils.o ./log.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./superdouble.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -llapack -lblas -lpthread -lm -lnlopt -larmadillo -lnlopt_cxx -lnlopt make[1]: Leaving directory '/<>/phyx-1.01+ds/src' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/phyx-1.01+ds' cd src && python3 run_tests.py character: 0 character: 1 character: 2 ================= TESTING pxsstat PASSED ================= TESTING pxs2fa PASSED ================= TESTING pxstrec PASSED ================= TESTING pxrevcomp PASSED ================= TESTING pxcat PASSED ================= TESTING pxbdsim PASSED ================= TESTING pxaa2cdn PASSED ================= TESTING pxbp PASSED ================= TESTING pxvcf2fa PASSED ================= TESTING pxboot PASSED ================= TESTING pxnj PASSED ================= TESTING pxsw PASSED ================= TESTING pxfqfilt PASSED ================= TESTING pxs2nex PASSED ================= TESTING pxcolt PASSED ================= TESTING pxrr PASSED ================= TESTING pxmrcaname PASSED ================= TESTING pxt2nex PASSED ================= TESTING pxcltr no test for pxcltr ================= TESTING pxt2new PASSED ================= TESTING pxrecode PASSED ================= TESTING pxclsq PASSED ================= TESTING pxmrca PASSED ================= TESTING pxtcomb no test for pxtcomb ================= TESTING pxrmk PASSED ================= TESTING pxconsq PASSED ================= TESTING pxtscale PASSED ================= TESTING pxtlate PASSED ================= TESTING pxlssq PASSED ================= TESTING pxnw PASSED ================= TESTING pxcontrates PASSED ================= TESTING pxtrt no test for pxtrt ================= TESTING pxupgma PASSED ================= TESTING pxs2phy PASSED ================= TESTING pxrlt PASSED ================= TESTING pxlog PASSED ================= TESTING pxrmt PASSED ================= TESTING pxmrcacut PASSED ================= TESTING pxssort PASSED ================= TESTING pxtcol no test for pxtcol ================= TESTING pxrls PASSED ================= TESTING pxseqgen PASSED ================= TESTING pxbdfit PASSED ================= TESTING pxlstr PASSED ================= TESTING pxrms PASSED ================= PASSED TESTS: 41 FAILED TESTS: 0 make[1]: Leaving directory '/<>/phyx-1.01+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>/phyx-1.01+ds' mkdir -p /<>/phyx-1.01+ds/debian/phyx/usr/bin dh_auto_install -- prefix=/<>/phyx-1.01+ds/debian/phyx/usr cd src && make -j4 install DESTDIR=/<>/phyx-1.01\+ds/debian/phyx AM_UPDATE_INFO_DIR=no prefix=/<>/phyx-1.01\+ds/debian/phyx/usr make[2]: Entering directory '/<>/phyx-1.01+ds/src' install -m 0755 px* /<>/phyx-1.01+ds/debian/phyx/usr/bin make[2]: Leaving directory '/<>/phyx-1.01+ds/src' #echo "#!/usr/bin/python3" > /<>/phyx-1.01+ds/debian/phyx/usr/bin/Phyx_Gui #cat src/Phyx_Gui.py >> /<>/phyx-1.01+ds/debian/phyx/usr/bin/Phyx_Gui make[1]: Leaving directory '/<>/phyx-1.01+ds' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installinit -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/<>/phyx-1.01+ds' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>/phyx-1.01+ds' dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dwz: debian/phyx/usr/bin/pxaa2cdn: .debug_info section not present dwz: debian/phyx/usr/bin/pxbdfit: .debug_info section not present dwz: debian/phyx/usr/bin/pxbdsim: .debug_info section not present dwz: debian/phyx/usr/bin/pxboot: .debug_info section not present dwz: debian/phyx/usr/bin/pxbp: .debug_info section not present dwz: debian/phyx/usr/bin/pxcat: .debug_info section not present dwz: debian/phyx/usr/bin/pxclsq: .debug_info section not present dwz: debian/phyx/usr/bin/pxcltr: .debug_info section not present dwz: debian/phyx/usr/bin/pxcolt: .debug_info section not present dwz: debian/phyx/usr/bin/pxconsq: .debug_info section not present dwz: debian/phyx/usr/bin/pxcontrates: .debug_info section not present dwz: debian/phyx/usr/bin/pxfqfilt: .debug_info section not present dwz: debian/phyx/usr/bin/pxlog: .debug_info section not present dwz: debian/phyx/usr/bin/pxlssq: .debug_info section not present dwz: debian/phyx/usr/bin/pxlstr: .debug_info section not present dwz: debian/phyx/usr/bin/pxmrca: .debug_info section not present dwz: debian/phyx/usr/bin/pxmrcacut: .debug_info section not present dwz: debian/phyx/usr/bin/pxmrcaname: .debug_info section not present dwz: debian/phyx/usr/bin/pxnj: .debug_info section not present dwz: debian/phyx/usr/bin/pxnw: .debug_info section not present dwz: debian/phyx/usr/bin/pxrecode: .debug_info section not present dwz: debian/phyx/usr/bin/pxrevcomp: .debug_info section not present dwz: debian/phyx/usr/bin/pxrls: .debug_info section not present dwz: debian/phyx/usr/bin/pxrlt: .debug_info section not present dwz: debian/phyx/usr/bin/pxrmk: .debug_info section not present dwz: debian/phyx/usr/bin/pxrms: .debug_info section not present dwz: debian/phyx/usr/bin/pxrmt: .debug_info section not present dwz: debian/phyx/usr/bin/pxrr: .debug_info section not present dwz: debian/phyx/usr/bin/pxs2fa: .debug_info section not present dwz: debian/phyx/usr/bin/pxs2nex: .debug_info section not present dwz: debian/phyx/usr/bin/pxs2phy: .debug_info section not present dwz: debian/phyx/usr/bin/pxseqgen: .debug_info section not present dwz: debian/phyx/usr/bin/pxssort: .debug_info section not present dwz: debian/phyx/usr/bin/pxsstat: .debug_info section not present dwz: debian/phyx/usr/bin/pxstrec: .debug_info section not present dwz: debian/phyx/usr/bin/pxsw: .debug_info section not present dwz: debian/phyx/usr/bin/pxt2new: .debug_info section not present dwz: debian/phyx/usr/bin/pxt2nex: .debug_info section not present dwz: debian/phyx/usr/bin/pxtcol: .debug_info section not present dwz: debian/phyx/usr/bin/pxtcomb: .debug_info section not present dwz: debian/phyx/usr/bin/pxtlate: .debug_info section not present dwz: debian/phyx/usr/bin/pxtrt: .debug_info section not present dwz: debian/phyx/usr/bin/pxtscale: .debug_info section not present dwz: debian/phyx/usr/bin/pxupgma: .debug_info section not present dwz: debian/phyx/usr/bin/pxvcf2fa: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 146 pkgstriptranslations: processing phyx (in debian/phyx); do_strip: , oemstrip: INFO: pkgstriptranslations version 146 pkgstriptranslations: processing phyx-dbgsym (in debian/.debhelper/phyx/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/phyx/DEBIAN/control, package phyx, directory debian/phyx pkgstripfiles: Running PNG optimization (using 4 cpus) for package phyx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'phyx' in '../phyx_1.01+ds-2build1_s390x.deb'. pkgstripfiles: processing control file: debian/.debhelper/phyx/dbgsym-root/DEBIAN/control, package phyx-dbgsym, directory debian/.debhelper/phyx/dbgsym-root dpkg-deb: building package 'phyx-dbgsym' in 'debian/.debhelper/scratch-space/build-phyx/phyx-dbgsym_1.01+ds-2build1_s390x.deb'. Renaming phyx-dbgsym_1.01+ds-2build1_s390x.deb to phyx-dbgsym_1.01+ds-2build1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../phyx_1.01+ds-2build1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-10T13:36:52Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyx_1.01+ds-2build1_s390x.changes: ----------------------------------- Format: 1.8 Date: Tue, 10 Nov 2020 11:03:00 +0000 Source: phyx Binary: phyx Architecture: s390x Version: 1.01+ds-2build1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dimitri John Ledkov Description: phyx - UNIX-style phylogenetic analyses on trees and sequences Changes: phyx (1.01+ds-2build1) hirsute; urgency=medium . * No change rebuild against new armadillo ABI. Checksums-Sha1: 16a7626740d42b7564a5c115dde1ab3a810c729d 125156 phyx-dbgsym_1.01+ds-2build1_s390x.ddeb 513f82363e8089b2b53131ff979f2e106dae9239 7039 phyx_1.01+ds-2build1_s390x.buildinfo fcd076bb96617341be8eac821fe32f82c949ac1f 1921552 phyx_1.01+ds-2build1_s390x.deb Checksums-Sha256: 7925955e37787111519027f62b55de303ccf2ff0c29851efa34601db4fca31d5 125156 phyx-dbgsym_1.01+ds-2build1_s390x.ddeb c4d8de7538bfe432bb9d256e97ef0a53ef40ae03b8be97856ea4b21d25a9ffc4 7039 phyx_1.01+ds-2build1_s390x.buildinfo 9caab09c0760dfa3f0aaba4a30eb9bbd2d2475dee333322ee825b9ce02f7dea5 1921552 phyx_1.01+ds-2build1_s390x.deb Files: 1030a0d22ecb937ee3b392e1d4b2d7f1 125156 debug optional phyx-dbgsym_1.01+ds-2build1_s390x.ddeb 64752bc9fbc5f703d2f3ff2ca61f9a29 7039 science optional phyx_1.01+ds-2build1_s390x.buildinfo 70bbcf00ee4e6a132754332b29120407 1921552 science optional phyx_1.01+ds-2build1_s390x.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: phyx Binary: phyx phyx-dbgsym Architecture: s390x Version: 1.01+ds-2build1 Checksums-Md5: 1030a0d22ecb937ee3b392e1d4b2d7f1 125156 phyx-dbgsym_1.01+ds-2build1_s390x.ddeb 70bbcf00ee4e6a132754332b29120407 1921552 phyx_1.01+ds-2build1_s390x.deb Checksums-Sha1: 16a7626740d42b7564a5c115dde1ab3a810c729d 125156 phyx-dbgsym_1.01+ds-2build1_s390x.ddeb fcd076bb96617341be8eac821fe32f82c949ac1f 1921552 phyx_1.01+ds-2build1_s390x.deb Checksums-Sha256: 7925955e37787111519027f62b55de303ccf2ff0c29851efa34601db4fca31d5 125156 phyx-dbgsym_1.01+ds-2build1_s390x.ddeb 9caab09c0760dfa3f0aaba4a30eb9bbd2d2475dee333322ee825b9ce02f7dea5 1921552 phyx_1.01+ds-2build1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Tue, 10 Nov 2020 13:36:52 +0000 Build-Path: /<>/phyx-1.01+ds Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc2-1ubuntu1), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-s390x-linux-gnu (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-16ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-16ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-16ubuntu1), gcc-10-base (= 10.2.0-16ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.68-1), libarmadillo-dev (= 1:10.1.0+dfsg-2), libarmadillo10 (= 1:10.1.0+dfsg-2), libarpack2 (= 3.7.0-3), libarpack2-dev (= 3.7.0-3), libasan6 (= 10.2.0-16ubuntu1), libatlas-cpp-0.6-3 (= 0.6.4-3), libatlas-cpp-0.6-dev (= 0.6.4-3), libatlas-cpp-0.6-tools (= 0.6.4-3), libatomic1 (= 10.2.0-16ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblas-dev (= 3.9.0-3ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu4), libc-dev-bin (= 2.32-0ubuntu4), libc6 (= 2.32-0ubuntu4), libc6-dev (= 2.32-0ubuntu4), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-16ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.182-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-16ubuntu1), libgcc-s1 (= 10.2.0-16ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.0-16ubuntu1), libglib2.0-0 (= 2.66.2-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-16ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-16ubuntu1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg-turbo8-dev (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblapack-dev (= 3.9.0-3ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2+20200918-1), libnlopt-cxx-dev (= 2.6.1-8ubuntu3), libnlopt-cxx0 (= 2.6.1-8ubuntu3), libnlopt-dev (= 2.6.1-8ubuntu3), libnlopt0 (= 2.6.1-8ubuntu3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-4), libpipeline1 (= 1.5.3-1), libpython3-stdlib (= 3.8.6-1), libpython3.8-minimal (= 3.8.6-1), libpython3.8-stdlib (= 3.8.6-1), libreadline8 (= 8.1~rc2-2), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-16ubuntu1), libstdc++6 (= 10.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libsuperlu-dev (= 5.2.2+dfsg1-2), libsuperlu5 (= 5.2.2+dfsg1-2), libsystemd0 (= 246.6-2ubuntu1), libsz2 (= 1.0.4-1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-16ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.32.0-4), perl-base (= 5.32.0-4), perl-modules-5.32 (= 5.32.0-4), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), python3 (= 3.8.6-1), python3-minimal (= 3.8.6-1), python3.8 (= 3.8.6-1), python3.8-minimal (= 3.8.6-1), readline-common (= 8.1~rc2-2), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605006180" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyx_1.01+ds-2build1_s390x.deb ------------------------------ new Debian package, version 2.0. size 1921552 bytes: control archive=3812 bytes. 1426 bytes, 23 lines control 8895 bytes, 120 lines md5sums Package: phyx Version: 1.01+ds-2build1 Architecture: s390x Maintainer: Ubuntu Developers Installed-Size: 20545 Depends: libarmadillo10 (>= 1:10.1.0+dfsg), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libstdc++6 (>= 9), python3 Section: science Priority: optional Homepage: https://github.com/FePhyFoFum/phyx Description: UNIX-style phylogenetic analyses on trees and sequences phyx provides a convenient, lightweight and inclusive toolkit consisting of programs spanning the wide breadth of programs utilized by researchers performing phylogenomic analyses. Modeled after Unix/GNU/Linux command line tools, individual programs perform a single task and operate on standard I/O streams. A result of this stream-centric approach is that, for most programs, only a single sequence or tree is in memory at any moment. Thus, large datasets can be processed with minimal memory requirements. phyx’s ever-growing complement of programs consists of over 35 programs focused on exploring, manipulating, analyzing and simulating phylogenetic objects (alignments, trees and MCMC logs). As with standard Unix command line tools, these programs can be piped (together with non-phyx tools), allowing the easy construction of efficient analytical pipelines. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2020-11-10 11:03 ./ drwxr-xr-x root/root 0 2020-11-10 11:03 ./usr/ drwxr-xr-x root/root 0 2020-11-10 11:03 ./usr/bin/ -rwxr-xr-x root/root 378984 2020-11-10 11:03 ./usr/bin/pxaa2cdn -rwxr-xr-x root/root 391304 2020-11-10 11:03 ./usr/bin/pxbdfit -rwxr-xr-x root/root 395376 2020-11-10 11:03 ./usr/bin/pxbdsim -rwxr-xr-x root/root 391272 2020-11-10 11:03 ./usr/bin/pxboot -rwxr-xr-x root/root 415848 2020-11-10 11:03 ./usr/bin/pxbp -rwxr-xr-x root/root 395368 2020-11-10 11:03 ./usr/bin/pxcat -rwxr-xr-x root/root 383080 2020-11-10 11:03 ./usr/bin/pxclsq -rwxr-xr-x root/root 370792 2020-11-10 11:03 ./usr/bin/pxcltr -rwxr-xr-x root/root 374888 2020-11-10 11:03 ./usr/bin/pxcolt -rwxr-xr-x root/root 370792 2020-11-10 11:03 ./usr/bin/pxconsq -rwxr-xr-x root/root 833680 2020-11-10 11:03 ./usr/bin/pxcontrates -rwxr-xr-x root/root 370792 2020-11-10 11:03 ./usr/bin/pxfqfilt -rwxr-xr-x root/root 411752 2020-11-10 11:03 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Build-Time: 116 Distribution: hirsute-proposed Host Architecture: s390x Install-Time: 13 Job: phyx_1.01+ds-2build1.dsc Machine Architecture: s390x Package: phyx Package-Time: 130 Source-Version: 1.01+ds-2build1 Space: n/a Status: successful Version: 1.01+ds-2build1 -------------------------------------------------------------------------------- Finished at 2020-11-10T13:36:52Z Build needed 00:02:10, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20274011 Scanning for processes to kill in build PACKAGEBUILD-20274011