https://launchpad.net/ubuntu/+source/phyx/1.3+ds-1build1/+build/23845389 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-075 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_214~560~ubuntu20.04.1 python3-lpbuildd_214~560~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Jun 06:18:07 ntpdate[300625]: adjust time server 10.211.37.1 offset -0.000730 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 --image-type chroot /home/buildd/filecache-default/71606a5f218d7969dca11cc1a0a8ecfd02d5af78 Creating target for build PACKAGEBUILD-23845389 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 Starting target for build PACKAGEBUILD-23845389 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23845389 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 Updating target for build PACKAGEBUILD-23845389 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main riscv64 Packages [1291 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe riscv64 Packages [13.6 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5721 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 Packages [36.2 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [20.4 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe riscv64 Packages [312 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [190 kB] Fetched 22.2 MB in 31s (728 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-riscv64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error0 libip4tc2 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mount ncurses-base ncurses-bin openssl passwd pinentry-curses readline-common systemd systemd-sysv util-linux xz-utils 74 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 65.5 MB of archives. After this operation, 1005 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main riscv64 base-files riscv64 12.2ubuntu1 [62.3 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main riscv64 bsdutils riscv64 1:2.38-4ubuntu1 [91.0 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libzstd1 riscv64 1.5.2+dfsg-1 [318 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libatomic1 riscv64 12.1.0-2ubuntu1 [7846 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgomp1 riscv64 12.1.0-2ubuntu1 [110 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-12-base riscv64 12.1.0-2ubuntu1 [18.8 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-s1 riscv64 12.1.0-2ubuntu1 [44.0 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcc1-0 riscv64 12.1.0-2ubuntu1 [42.8 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++6 riscv64 12.1.0-2ubuntu1 [674 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgpg-error0 riscv64 1.45-2 [62.7 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcrypt20 riscv64 1.10.1-2ubuntu1 [508 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main riscv64 liblzma5 riscv64 5.2.5-2.1 [93.5 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main riscv64 systemd-sysv riscv64 249.11-0ubuntu4 [10.2 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu6 [18.0 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libblkid1 riscv64 2.38-4ubuntu1 [149 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libselinux1 riscv64 3.4-1 [73.1 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libmount1 riscv64 2.38-4ubuntu1 [157 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsmartcols1 riscv64 2.38-4ubuntu1 [102 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main riscv64 login riscv64 1:4.11.1+dfsg1-2ubuntu1 [180 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main riscv64 util-linux-extra riscv64 2.38-4ubuntu1 [103 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main riscv64 util-linux riscv64 2.38-4ubuntu1 [1142 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main riscv64 mount riscv64 2.38-4ubuntu1 [130 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsemanage-common all 3.4-1 [9828 B] Get:24 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsepol2 riscv64 3.4-1 [257 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsemanage2 riscv64 3.4-1 [83.9 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main riscv64 passwd riscv64 1:4.11.1+dfsg1-2ubuntu1 [735 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main riscv64 adduser all 3.121ubuntu1 [150 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main riscv64 systemd riscv64 249.11-0ubuntu4 [4109 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsystemd0 riscv64 249.11-0ubuntu4 [287 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libudev1 riscv64 249.11-0ubuntu4 [69.3 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libapt-pkg6.0 riscv64 2.5.0 [904 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dpkg riscv64 1.21.8ubuntu1 [1293 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-8 [83.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ncurses-bin riscv64 6.3+20220423-2 [176 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main riscv64 init-system-helpers all 1.63 [38.7 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main riscv64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main riscv64 apt riscv64 2.5.0 [1336 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main riscv64 logsave riscv64 1.46.5-2ubuntu2 [9366 B] Get:39 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libext2fs2 riscv64 1.46.5-2ubuntu2 [192 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main riscv64 e2fsprogs riscv64 1.46.5-2ubuntu2 [545 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main riscv64 init riscv64 1.63 [5674 B] Get:42 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdb5.3 riscv64 5.3.28+dfsg1-0.9 [660 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libncurses6 riscv64 6.3+20220423-2 [92.7 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libncursesw6 riscv64 6.3+20220423-2 [127 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libtinfo6 riscv64 6.3+20220423-2 [89.8 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libuuid1 riscv64 2.38-4ubuntu1 [26.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libcom-err2 riscv64 1.46.5-2ubuntu2 [8028 B] Get:48 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libss2 riscv64 1.46.5-2ubuntu2 [10.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main riscv64 readline-common all 8.1.2-1.2 [53.6 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libreadline8 riscv64 8.1.2-1.2 [130 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libsqlite3-0 riscv64 3.38.5-1 [572 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libssl3 riscv64 3.0.3-5ubuntu3 [1448 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main riscv64 openssl riscv64 3.0.3-5ubuntu3 [1137 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libpng16-16 riscv64 1.6.37-5 [174 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main riscv64 xz-utils riscv64 5.2.5-2.1 [80.4 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libctf0 riscv64 2.38-4ubuntu1 [96.8 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libctf-nobfd0 riscv64 2.38-4ubuntu1 [98.9 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main riscv64 binutils-riscv64-linux-gnu riscv64 2.38-4ubuntu1 [911 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libbinutils riscv64 2.38-4ubuntu1 [485 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main riscv64 binutils riscv64 2.38-4ubuntu1 [3090 B] Get:61 http://ftpmaster.internal/ubuntu kinetic/main riscv64 binutils-common riscv64 2.38-4ubuntu1 [214 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libasan6 riscv64 11.3.0-3ubuntu1 [2093 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main riscv64 g++-11 riscv64 11.3.0-3ubuntu1 [9258 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11 riscv64 11.3.0-3ubuntu1 [15.8 MB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libstdc++-11-dev riscv64 11.3.0-3ubuntu1 [4587 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libgcc-11-dev riscv64 11.3.0-3ubuntu1 [2280 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main riscv64 cpp-11 riscv64 11.3.0-3ubuntu1 [7947 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main riscv64 gcc-11-base riscv64 11.3.0-3ubuntu1 [20.9 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main riscv64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main riscv64 lto-disabled-list all 26 [12.4 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main riscv64 libfakeroot riscv64 1.29-1ubuntu1 [26.6 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main riscv64 fakeroot riscv64 1.29-1ubuntu1 [67.6 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic-proposed/main riscv64 linux-libc-dev riscv64 5.15.0-35.36+22.10.1 [1245 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main riscv64 pinentry-curses riscv64 1.2.0-1ubuntu1 [36.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 65.5 MB in 10s (6364 kB/s) (Reading database ... 13360 files and directories currently installed.) 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Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23845389 riscv64 kinetic-proposed -c chroot:build-PACKAGEBUILD-23845389 --arch=riscv64 --dist=kinetic-proposed --nolog phyx_1.3+ds-1build1.dsc Initiating build PACKAGEBUILD-23845389 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-075.buildd +==============================================================================+ | phyx 1.3+ds-1build1 (riscv64) Mon, 13 Jun 2022 06:24:25 +0000 | +==============================================================================+ Package: phyx Version: 1.3+ds-1build1 Source Version: 1.3+ds-1build1 Distribution: kinetic-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23845389/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/phyx-eNxgkB/resolver-WPwE3l' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- phyx_1.3+ds-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/phyx-eNxgkB/phyx-1.3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/phyx-eNxgkB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libatlas-cpp-0.6-dev, libarmadillo-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), python3, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libatlas-cpp-0.6-dev, libarmadillo-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [414 B] Get:5 copy:/<>/apt_archive ./ Packages [501 B] Fetched 1872 B in 1s (3573 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo11 libarpack2 libarpack2-dev libatlas-cpp-0.6-3 libatlas-cpp-0.6-dev libatlas-cpp-0.6-tools libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0 libxml2 m4 man-db media-types pkg-config po-debconf python3 python3-minimal python3.10 python3.10-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libitpp-dev libatlas-cpp-doc liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc libssl-doc libsuperlu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarmadillo-dev libarmadillo11 libarpack2 libarpack2-dev libatlas-cpp-0.6-3 libatlas-cpp-0.6-dev libatlas-cpp-0.6-tools libblas-dev libblas3 libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu71 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0 libxml2 m4 man-db media-types pkg-config po-debconf python3 python3-minimal python3.10 python3.10-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 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(Reading database ... 13416 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.5-1_riscv64.deb ... Unpacking libpython3.10-minimal:riscv64 (3.10.5-1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.4.8-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.5-1_riscv64.deb ... Unpacking python3.10-minimal (3.10.5-1) ... Setting up libpython3.10-minimal:riscv64 (3.10.5-1) ... Setting up libexpat1:riscv64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13718 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.4-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.10.4-0ubuntu2) ... Selecting previously unselected package media-types. 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Setting up libpsl5:riscv64 (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up hdf5-helpers (1.10.7+repack-4ubuntu2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.72.2-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build6) ... Setting up libnghttp2-14:riscv64 (1.47.0-1) ... Setting up libmagic1:riscv64 (1:5.41-4) ... Setting up gettext-base (0.21-6) ... Setting up libnlopt0:riscv64 (2.7.1-4build1) ... Setting up file (1:5.41-4) ... Setting up libaec0:riscv64 (1.0.6-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg-6ubuntu1) ... Setting up libatlas-cpp-0.6-3:riscv64 (0.6.4-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:riscv64 (3.10.1-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu3) ... Setting up libssl-dev:riscv64 (3.0.3-5ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up libjpeg-turbo8:riscv64 (2.1.2-0ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg-6ubuntu1) ... Setting up libssh-4:riscv64 (0.9.6-2build1) ... Setting up libgfortran5:riscv64 (12.1.0-2ubuntu1) ... Setting up libnlopt-cxx0:riscv64 (2.7.1-4build1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu9) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libmpdec3:riscv64 (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libnlopt-dev:riscv64 (2.7.1-4build1) ... Setting up libatlas-cpp-0.6-tools (0.6.4-3) ... Setting up libelf1:riscv64 (0.187-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1) ... Setting up libblas-dev:riscv64 (3.10.1-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up libsz2:riscv64 (1.0.6-1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu10) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:riscv64 (0.187-1) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.2-0ubuntu1) ... Setting up liblapack3:riscv64 (3.10.1-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libaec-dev:riscv64 (1.0.6-1) ... Setting up libarpack2:riscv64 (3.8.0-1) ... Setting up libsuperlu5:riscv64 (5.3.0+dfsg1-2) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libldap-2.5-0:riscv64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:riscv64 (3.10.5-1) ... Setting up libnlopt-cxx-dev:riscv64 (2.7.1-4build1) ... Setting up liblapack-dev:riscv64 (3.10.1-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libatlas-cpp-0.6-dev:riscv64 (0.6.4-3) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:riscv64 (7.83.1-1ubuntu1) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu10) ... Setting up libsuperlu-dev:riscv64 (5.3.0+dfsg1-2) ... Setting up libpython3-stdlib:riscv64 (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libarpack2-dev:riscv64 (3.8.0-1) ... Setting up python3.10 (3.10.5-1) ... Setting up libarmadillo11 (1:11.1.1+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu10) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up libcurl4-openssl-dev:riscv64 (7.83.1-1ubuntu1) ... Setting up libhdf5-103-1:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-cpp-103-1:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-hl-100:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libhdf5-hl-cpp-100:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-fortran-102:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-hl-fortran-100:riscv64 (1.10.7+repack-4ubuntu2) ... Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libarmadillo-dev (1:11.1.1+dfsg-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.38-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-35.36+22.10.1 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38-4ubuntu1 binutils-common_2.38-4ubuntu1 binutils-riscv64-linux-gnu_2.38-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-2ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hdf5-helpers_1.10.7+repack-4ubuntu2 hostname_3.23ubuntu2 init_1.63 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapparmor1_3.0.4-2ubuntu2 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libarmadillo-dev_1:11.1.1+dfsg-2 libarmadillo11_1:11.1.1+dfsg-2 libarpack2_3.8.0-1 libarpack2-dev_3.8.0-1 libasan6_11.3.0-3ubuntu1 libassuan0_2.5.5-3 libatlas-cpp-0.6-3_0.6.4-3 libatlas-cpp-0.6-dev_0.6.4-3 libatlas-cpp-0.6-tools_0.6.4-3 libatomic1_12.1.0-2ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38-4ubuntu1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build6 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build3 libcc1-0_12.1.0-2ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38-4ubuntu1 libctf0_2.38-4ubuntu1 libcurl4_7.83.1-1ubuntu1 libcurl4-openssl-dev_7.83.1-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.9 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.8ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-3ubuntu1 libgcc-s1_12.1.0-2ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-2ubuntu1 libglib2.0-0_2.72.2-2 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.4-2ubuntu1 libgomp1_12.1.0-2ubuntu1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.19.2-2 libhdf5-103-1_1.10.7+repack-4ubuntu2 libhdf5-cpp-103-1_1.10.7+repack-4ubuntu2 libhdf5-dev_1.10.7+repack-4ubuntu2 libhdf5-fortran-102_1.10.7+repack-4ubuntu2 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libsub-override-perl_0.09-2 libsuperlu-dev_5.3.0+dfsg1-2 libsuperlu5_5.3.0+dfsg1-2 libsystemd0_249.11-0ubuntu4 libsz2_1.0.6-1 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libuchardet0_0.0.7-1build2 libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.15.0-35.36+22.10.1 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_26 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.3-5ubuntu3 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkg-config_0.29.2-1ubuntu3 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-minimal_3.10.4-0ubuntu2 python3.10_3.10.5-1 python3.10-minimal_3.10.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: phyx Binary: phyx Architecture: any Version: 1.3+ds-1build1 Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: https://github.com/FePhyFoFum/phyx Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/phyx Vcs-Git: https://salsa.debian.org/med-team/phyx.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3, liblapack-dev, libnlopt-cxx-dev, libnlopt-dev, libatlas-cpp-0.6-dev, libarmadillo-dev Package-List: phyx deb science optional arch=any Checksums-Sha1: febdde970f6f44c676047f52c6b4625f1db104fc 1187728 phyx_1.3+ds.orig.tar.xz d1ef8be0dd12fad8a8dd0038827aa6cf393a7035 7668 phyx_1.3+ds-1build1.debian.tar.xz Checksums-Sha256: f465a87b9ef03f11a41a47580b28079909e6edbf7b2bda3bab3ae8b70d92f184 1187728 phyx_1.3+ds.orig.tar.xz 514c55b372524a762ca08b71717ee3c30ad6cca83de532f4adb075bca1f98836 7668 phyx_1.3+ds-1build1.debian.tar.xz Files: cc931be75d35c74f22872985a62bfd44 1187728 phyx_1.3+ds.orig.tar.xz 406540fbb723a8dac3db6cda77b36b7a 7668 phyx_1.3+ds-1build1.debian.tar.xz Original-Maintainer: Debian Med Packaging Team -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmKm1kYaHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz13HxAAxIXrss97gymc3TmeoxFo wsJZKuQd7TbjacxQjTLiaYqTOF0TOVbdAp6/DhD99lMr15W8LdKoCrZHhk1uvZQJ VZg0i3JwLKQxTx4AsnvT6fihpl/ZpmfqfUSLRqVfsoXXm4WlxWUP6kpjezUlF6eo BTb67bReqMqv7xE6ioG8bdaQKsoKnmIFetApCXaVR8orEkn/r+OFQQMJ4z5ayf5/ sAie7l7jOIC9ZG5fT7VjNXoo4qE/kuz5BVeCT+6mv5bgdgp+3wRqlIYFzBw5r6cq xCM9spzshrkc7GsJuzuVXAnfu/GTpMTIfidulQrF9GAAG6DkaI9vE89r95XcJphq qMu37+Ah3/63JBNokmzHZlcKthp/cdnG0E6tGZ75a6Z3GDRIrH2oH5t0CqsSwpiV BC1DmdZO2aMGS9BtyXqdOsYOJoUDE2qlU3ovvYzTa/SsbhmS84PJb6k0gIhowS3X hk0/DVEkqsqHVZTztWRuklL9ZsR5bC/7IYTJzjZcGWcaZMzIdiETdwU5pVyoeR88 nEkEEpw7vhyVkAOFz0aAnmk6VTXKMKQQzkGAonwHrAGkkcgS+pGe3K90sXpcF4X8 VazY6Koz7XL1SWnOTrxkEKcGCu+nG82ln2UwvC8bmHJZ41aBBXILhQY0UIhbf/HY oJ3UHEi5pr63ea2f1UKPkqY= =VH4v -----END PGP SIGNATURE----- gpgv: Signature made Mon Jun 13 06:16:38 2022 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./phyx_1.3+ds-1build1.dsc dpkg-source: info: extracting phyx in /<> dpkg-source: info: unpacking phyx_1.3+ds.orig.tar.xz dpkg-source: info: unpacking phyx_1.3+ds-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying build-more-programs.patch dpkg-source: info: applying i386.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23845389 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23845389 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23845389 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package phyx dpkg-buildpackage: info: source version 1.3+ds-1build1 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --sourcedirectory=src debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf src/phyx.logfile if [ -r src/Makefile ]; then \ /usr/bin/make -C src distclean; \ fi make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src cd src && ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for fabs in -lm... yes checking for nlopt_version in -lnlopt... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for nlopt.h... yes checking for library containing wrapper_sgesv_... -larmadillo checking for fenv.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for floor... yes checking for pow... yes checking for sqrt... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h dh_auto_build -a -O--sourcedirectory=src cd src && make -j8 make[1]: Entering directory '/<>/src' g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "utils.d" -o "utils.o" "utils.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "citations.d" -o "citations.o" "citations.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "log.d" -o "log.o" "log.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "superdouble.d" -o "superdouble.o" "superdouble.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "timer.d" -o "timer.o" "timer.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "sequence.d" -o "sequence.o" "sequence.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "seq_reader.d" -o "seq_reader.o" "seq_reader.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "seq_utils.d" -o "seq_utils.o" "seq_utils.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "seq_models.d" -o "seq_models.o" "seq_models.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "pairwise_alignment.d" -o "pairwise_alignment.o" "pairwise_alignment.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "aa2cdn.d" -o "aa2cdn.o" "aa2cdn.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_aa2cdn.d" -o "main_aa2cdn.o" "main_aa2cdn.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "node.d" -o "node.o" "node.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tree.d" -o "tree.o" "tree.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tree_reader.d" -o "tree_reader.o" "tree_reader.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tree_utils.d" -o "tree_utils.o" "tree_utils.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "bd_sim.d" -o "bd_sim.o" "bd_sim.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_bd_sim.d" -o "main_bd_sim.o" "main_bd_sim.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "seq_sample.d" -o "seq_sample.o" "seq_sample.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_boot.d" -o "main_boot.o" "main_boot.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_bp.d" -o "main_bp.o" "main_bp.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "concat.d" -o "concat.o" "concat.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_cat.d" -o "main_cat.o" "main_cat.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "clean_seq.d" -o "clean_seq.o" "clean_seq.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_clsq.d" -o "main_clsq.o" "main_clsq.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "clean_tree.d" -o "clean_tree.o" "clean_tree.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_cltr.d" -o "main_cltr.o" "main_cltr.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "collapse_tree.d" -o "collapse_tree.o" "collapse_tree.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_colt.d" -o "main_colt.o" "main_colt.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "comp_test.d" -o "comp_test.o" "comp_test.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_comp.d" -o "main_comp.o" "main_comp.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_consq.d" -o "main_consq.o" "main_consq.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_sw.d" -o "main_sw.o" "main_sw.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_t2new.d" -o "main_t2new.o" "main_t2new.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_t2nex.d" -o "main_t2nex.o" "main_t2nex.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_tcol.d" -o "main_tcol.o" "main_tcol.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_tcomb.d" -o "main_tcomb.o" "main_tcomb.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tgen.d" -o "tgen.o" "tgen.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_tgen.d" -o "main_tgen.o" "main_tgen.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tlate.d" -o "tlate.o" "tlate.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_tlate.d" -o "main_tlate.o" "main_tlate.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_trt.d" -o "main_trt.o" "main_trt.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "tscale.d" -o "tscale.o" "tscale.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_tscale.d" -o "main_tscale.o" "main_tscale.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "vcf_reader.d" -o "vcf_reader.o" "vcf_reader.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_vcf2fa.d" -o "main_vcf2fa.o" "main_vcf2fa.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "bd_fit.d" -o "bd_fit.o" "bd_fit.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_bd_fit.d" -o "main_bd_fit.o" "main_bd_fit.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_contrates.d" -o "main_contrates.o" "main_contrates.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "optimize_cont_models_nlopt.d" -o "optimize_cont_models_nlopt.o" "optimize_cont_models_nlopt.cpp" g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c -fmessage-length=0 -MMD -MP -MF "main_strec.d" -o "main_strec.o" "main_strec.cpp" building pxaa2cdn g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxaa2cdn" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math aa2cdn.o main_aa2cdn.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now building pxbdsim g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxbdsim" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math bd_sim.o main_bd_sim.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now building pxboot g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxboot" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math seq_sample.o main_boot.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxbdsim.1.in > man/pxbdsim.1 building pxbp g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxbp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_bp.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxaa2cdn.1.in > man/pxaa2cdn.1 building pxcat g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxcat" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math concat.o main_cat.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxboot.1.in > man/pxboot.1 building pxclsq g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxclsq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math clean_seq.o main_clsq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now building pxcltr g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxcltr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math clean_tree.o main_cltr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxcat.1.in > man/pxcat.1 building pxcolt g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxcolt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math collapse_tree.o main_colt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxbp.1.in > man/pxbp.1 building pxcomp g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxcomp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math comp_test.o main_comp.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxclsq.1.in > man/pxclsq.1 building pxconsq g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxconsq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_consq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxcolt.1.in > man/pxcolt.1 building pxfqfilt g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxfqfilt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_fqfilt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxcomp.1.in > man/pxcomp.1 building pxlog g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxlog" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math log_manip.o main_log.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxcltr.1.in > man/pxcltr.1 bulding pxlssq g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxlssq" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math seq_info.o main_lssq.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxconsq.1.in > man/pxconsq.1 building pxlstr g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxlstr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math tree_info.o main_lstr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxfqfilt.1.in > man/pxfqfilt.1 building pxmono g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxmono" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_mono.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now building pxmrca g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxmrca" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_mrca.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxlog.1.in > man/pxlog.1 building pxmrcacut g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxmrcacut" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_mrca_cut.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxlssq.1.in > man/pxlssq.1 building pxmrcaname g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxmrcaname" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_mrca_name.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxlstr.1.in > man/pxlstr.1 building pxnw g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxnw" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_nw.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxmono.1.in > man/pxmono.1 building pxpoly g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxpoly" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math polytomy.o main_poly.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxmrcacut.1.in > man/pxmrcacut.1 building pxrecode g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrecode" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math recode.o main_recode.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxmrca.1.in > man/pxmrca.1 building pxrevcomp g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrevcomp" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_revcomp.o edlib.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxmrcaname.1.in > man/pxmrcaname.1 building pxrls g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrls" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math relabel.o main_rls.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxnw.1.in > man/pxnw.1 building pxupgma g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxupgma" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math upgma.o main_upgma.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxpoly.1.in > man/pxpoly.1 building pxrlt g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrlt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math relabel.o main_rlt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrevcomp.1.in > man/pxrevcomp.1 building pxnj g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxnj" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math nj.o main_nj.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrecode.1.in > man/pxrecode.1 building pxrmk g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrmk" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_rmk.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrls.1.in > man/pxrls.1 building pxrms g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrms" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_rms.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrlt.1.in > man/pxrlt.1 building pxrmt g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrmt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_rmt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxupgma.1.in > man/pxupgma.1 building pxrr g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxrr" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_rr.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrmk.1.in > man/pxrmk.1 building pxs2fa g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxs2fa" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_s2fa.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxnj.1.in > man/pxnj.1 building pxs2nex g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxs2nex" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_s2nex.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrms.1.in > man/pxrms.1 building pxs2phy g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxs2phy" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_s2phy.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxrmt.1.in > man/pxrmt.1 building pxseqgen g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o "pxseqgen" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_seqgen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxrr.1.in > man/pxrr.1 building pxssort g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxssort" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_ssort.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxs2fa.1.in > man/pxs2fa.1 cat man/pxs2nex.1.in > man/pxs2nex.1 building pxsstat g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxsstat" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math sstat.o main_sstat.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now building pxsw g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxsw" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_sw.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxs2phy.1.in > man/pxs2phy.1 building pxt2new g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxt2new" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_t2new.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxssort.1.in > man/pxssort.1 building pxt2nex g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxt2nex" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_t2nex.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxsw.1.in > man/pxsw.1 building pxtcol g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtcol" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_tcol.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxsstat.1.in > man/pxsstat.1 building pxtcomb g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtcomb" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_tcomb.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxt2new.1.in > man/pxt2new.1 building pxtgen g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtgen" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math tgen.o main_tgen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxt2nex.1.in > man/pxt2nex.1 building pxtlate g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtlate" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math tlate.o main_tlate.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxtcol.1.in > man/pxtcol.1 building pxtrt g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtrt" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_trt.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxtcomb.1.in > man/pxtcomb.1 building pxtscale g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxtscale" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math tscale.o main_tscale.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxtgen.1.in > man/pxtgen.1 building pxvcf2fa g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o "pxvcf2fa" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math vcf_reader.o main_vcf2fa.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cat man/pxseqgen.1.in > man/pxseqgen.1 building pxbdfit g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o "pxbdfit" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math bd_fit.o main_bd_fit.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxtrt.1.in > man/pxtrt.1 cat man/pxtlate.1.in > man/pxtlate.1 cat man/pxtscale.1.in > man/pxtscale.1 cat man/pxvcf2fa.1.in > man/pxvcf2fa.1 cat man/pxbdfit.1.in > man/pxbdfit.1 building pxcontrates g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o "pxcontrates" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_contrates.o optimize_cont_models_nlopt.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo cat man/pxcontrates.1.in > man/pxcontrates.1 building pxstrec g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -o "pxstrec" -O3 -std=c++14 -fopenmp -Wall -DOMP -ftree-vectorize -ffast-math main_strec.o ./utils.o ./citations.o ./log.o ./superdouble.o ./timer.o ./sequence.o ./seq_reader.o ./seq_utils.o ./seq_models.o ./pairwise_alignment.o ./node.o ./tree.o ./tree_reader.o ./tree_utils.o ./rate_model.o ./state_reconstructor.o ./optimize_state_reconstructor_nlopt.o ./optimize_state_reconstructor_periods_nlopt.o ./branch_segment.o ./cont_models.o ./seq_gen.o -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -llapack -lblas -lpthread -lm -lnlopt -larmadillo # -lgfortran cat man/pxstrec.1.in > man/pxstrec.1 make[1]: Leaving directory '/<>/src' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mkdir -p /<>/debian/phyx/usr/bin dh_auto_install -- PREFIX=/<>/debian/phyx/usr cd src && make -j8 install DESTDIR=/<>/phyx-1.3\+ds/debian/phyx AM_UPDATE_INFO_DIR=no PREFIX=/<>/phyx-1.3\+ds/debian/phyx/usr make[2]: Entering directory '/<>/src' mkdir -p /<>/debian/phyx/usr/bin && install -m 0755 px* /<>/debian/phyx/usr/bin mkdir -p /<>/debian/phyx/usr/share/man/man1 && install -m 0755 man/px*.1 /<>/debian/phyx/usr/share/man/man1 make[2]: Leaving directory '/<>/src' #echo "#!/usr/bin/python3" > /<>/debian/phyx/usr/bin/Phyx_Gui #cat src/Phyx_Gui.py >> /<>/debian/phyx/usr/bin/Phyx_Gui make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src debugedit: debian/phyx/usr/bin/pxstrec: Unknown DWARF DW_FORM_0x1f21 56d134942776f52f71ef6b21ade807b11674d8d2 debugedit: debian/phyx/usr/bin/pxrmk: Unknown DWARF DW_FORM_0x1f20 3642cfcea189747fc8f3f47c22c7659c0f1d1e80 debugedit: debian/phyx/usr/bin/pxcltr: Unknown DWARF DW_FORM_0x1f21 11983831a91acfb020345651d9befc78a14fc2bf debugedit: debian/phyx/usr/bin/pxlog: Unknown DWARF DW_FORM_0x1f21 01e50e01f219315745e6768d221d1d291e3c17c7 debugedit: debian/phyx/usr/bin/pxt2new: Unknown DWARF DW_FORM_0x1f20 f1fef6410d949cc52d4eee790a33e94f1a817caf debugedit: debian/phyx/usr/bin/pxtlate: Unknown DWARF DW_FORM_0x1f21 645cb69b8597a54c55ff0f18a84f6f472a46d3b1 debugedit: debian/phyx/usr/bin/pxbdsim: Unknown DWARF DW_FORM_0x1f21 51d4e6e42353d150e62f5e6c7da878b8b46e2e98 debugedit: debian/phyx/usr/bin/pxvcf2fa: Unknown DWARF DW_FORM_0x1f21 906c72ac00a5409da0dca28d0165983334fbc9ef debugedit: debian/phyx/usr/bin/pxssort: Unknown DWARF DW_FORM_0x1f21 f3265710003d7ff912108c0305f257ec4a09c4f7 debugedit: debian/phyx/usr/bin/pxcolt: Unknown DWARF DW_FORM_0x1f21 20b7081752a2143643d40ced4c9722b0453e99d5 debugedit: debian/phyx/usr/bin/pxupgma: Unknown DWARF DW_FORM_0x1f21 4ee680367b9fe296823f82180a5e2331fb2ac469 debugedit: debian/phyx/usr/bin/pxs2fa: Unknown DWARF DW_FORM_0x1f21 77a480682ab675d6b0fa3a836c611f03d1d5d2fd debugedit: debian/phyx/usr/bin/pxaa2cdn: Unknown DWARF DW_FORM_0x1f21 9bbb7e67b86fee4d034c7d997a949a728c13346e debugedit: debian/phyx/usr/bin/pxlssq: Unknown DWARF DW_FORM_0x1f21 e59f608ddf650b485f3ff123b7d21f7bd90fc794 debugedit: debian/phyx/usr/bin/pxbp: Unknown DWARF DW_FORM_0x1f21 09c47f8e41bf1113322a559599c3fc1d955d2e20 debugedit: debian/phyx/usr/bin/pxs2phy: Unknown DWARF DW_FORM_0x1f21 88533a18859f3d096d6b4fefd5120d05d15a9521 debugedit: debian/phyx/usr/bin/pxrevcomp: Unknown DWARF DW_FORM_0x1f21 840834c606da88431f96cd8905ce5a8aae19b437 debugedit: debian/phyx/usr/bin/pxtrt: Unknown DWARF DW_FORM_0x1f20 28c2ba3bc514a54d90eb48195c91fb8cf4e571ed debugedit: debian/phyx/usr/bin/pxmrcaname: Unknown DWARF DW_FORM_0x1f21 4ab1c1bc03deb72aaffc04fb4ec3fc50722b3a7e debugedit: debian/phyx/usr/bin/pxbdfit: Unknown DWARF DW_FORM_0x1f21 0df9e949bd21f5b80e4538c753a4032e8d1fa179 debugedit: debian/phyx/usr/bin/pxsstat: Unknown DWARF DW_FORM_0x1f21 c499bed6cda5271a31140a49b0d48aa71e6e2d5c debugedit: debian/phyx/usr/bin/pxnj: Unknown DWARF DW_FORM_0x1f21 5525c9e3de59b1b31b55d011a1fbd0772bd370c7 debugedit: debian/phyx/usr/bin/pxnw: Unknown DWARF DW_FORM_0x1f21 593924174760f839f9430cbf4c76d7547e0aa0e8 debugedit: debian/phyx/usr/bin/pxclsq: Unknown DWARF DW_FORM_0x1f21 de515b81ea49a964934574d8ee8e8eb844de5857 debugedit: debian/phyx/usr/bin/pxrlt: Unknown DWARF DW_FORM_0x1f21 9063dd69ad740d1fc623074b7ba7ad10513b8711 debugedit: debian/phyx/usr/bin/pxrls: Unknown DWARF DW_FORM_0x1f21 98b9bca7b8f080b82ca09c0cc4a23f786d8e7c75 debugedit: debian/phyx/usr/bin/pxrms: Unknown DWARF DW_FORM_0x1f21 fb1fbe456cf10fea9d62fdfd8ec58432bcd251fc debugedit: debian/phyx/usr/bin/pxs2nex: Unknown DWARF DW_FORM_0x1f21 b046c16351c2770a7f949a1c6320c889a02fed87 debugedit: debian/phyx/usr/bin/pxfqfilt: Unknown DWARF DW_FORM_0x1f21 fdcdde85af61245bf3223035dbb27c9d802b64f6 debugedit: debian/phyx/usr/bin/pxmono: Unknown DWARF DW_FORM_0x1f20 9481c9b9bf8fb5ce3c280e346069b75346648725 debugedit: debian/phyx/usr/bin/pxpoly: Unknown DWARF DW_FORM_0x1f21 0a982e9d8c39e8f263428d1d20478b2af020df75 debugedit: debian/phyx/usr/bin/pxboot: Unknown DWARF DW_FORM_0x1f21 26500064da30773f40454c74c78acb9c6f2ae9b3 debugedit: debian/phyx/usr/bin/pxmrca: Unknown DWARF DW_FORM_0x1f21 bfaec8137060c1544d12974b2dadbf4567ba077c debugedit: debian/phyx/usr/bin/pxseqgen: Unknown DWARF DW_FORM_0x1f21 75c0a2c102fcf06a4b3e6e248eed4e2ac4c18de9 debugedit: debian/phyx/usr/bin/pxtgen: Unknown DWARF DW_FORM_0x1f21 23e1abce284514b511620b2772fd192f852071ad debugedit: debian/phyx/usr/bin/pxt2nex: Unknown DWARF DW_FORM_0x1f20 f361296b32963351853f3d469081238a1937c43f debugedit: debian/phyx/usr/bin/pxtcomb: Unknown DWARF DW_FORM_0x1f21 bf9f06456921df02e32ade3ce70e093415d727f4 debugedit: debian/phyx/usr/bin/pxconsq: Unknown DWARF DW_FORM_0x1f21 992176ca3cd29c3e9315dbff22982a3a4db48b4a debugedit: debian/phyx/usr/bin/pxcat: Unknown DWARF DW_FORM_0x1f21 85376700f4dcdce970588ea04d9f38c38ab383cc debugedit: debian/phyx/usr/bin/pxcomp: Unknown DWARF DW_FORM_0x1f21 5dacbb5a06eff3f1767f31425c15724d14a8ebbb debugedit: debian/phyx/usr/bin/pxrmt: Unknown DWARF DW_FORM_0x1f20 cc8c8d12aa8e722656daa1506c980cdfbee5c342 debugedit: debian/phyx/usr/bin/pxcontrates: Unknown DWARF DW_FORM_0x1f20 f4df6122cf2e4155df98d83a56d88d31e126780c debugedit: debian/phyx/usr/bin/pxtscale: Unknown DWARF DW_FORM_0x1f21 1dc2530e8e99332b514b7bd63a585b151a3a2ef9 debugedit: debian/phyx/usr/bin/pxsw: Unknown DWARF DW_FORM_0x1f21 eab6e8523d56fb9cbf5256ff9f250ab9792ccbfa debugedit: debian/phyx/usr/bin/pxtcol: Unknown DWARF DW_FORM_0x1f21 b7289edbb920c6316aad8ebdcf92c61687bd658a debugedit: debian/phyx/usr/bin/pxrecode: Unknown DWARF DW_FORM_0x1f21 f51c926760efaba20cbca8bd18a632dee8da97c5 debugedit: debian/phyx/usr/bin/pxlstr: Unknown DWARF DW_FORM_0x1f21 2bdd4ebf5605dc859871434829ea68c610af4650 debugedit: debian/phyx/usr/bin/pxmrcacut: Unknown DWARF DW_FORM_0x1f21 ad6d42c0387ce712b651c29804c6b3fb768e23c7 debugedit: debian/phyx/usr/bin/pxrr: Unknown DWARF DW_FORM_0x1f20 ac370ac31fbdec9f5758d165b1f9a25a57ad7e5d dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing phyx (in debian/phyx); do_strip: , oemstrip: pkgstriptranslations: processing phyx-dbgsym (in debian/.debhelper/phyx/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/phyx/DEBIAN/control, package phyx, directory debian/phyx pkgstripfiles: Running PNG optimization (using 8 cpus) for package phyx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'phyx' in '../phyx_1.3+ds-1build1_riscv64.deb'. pkgstripfiles: processing control file: debian/.debhelper/phyx/dbgsym-root/DEBIAN/control, package phyx-dbgsym, directory debian/.debhelper/phyx/dbgsym-root dpkg-deb: building package 'phyx-dbgsym' in 'debian/.debhelper/scratch-space/build-phyx/phyx-dbgsym_1.3+ds-1build1_riscv64.deb'. Renaming phyx-dbgsym_1.3+ds-1build1_riscv64.deb to phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb dpkg-genbuildinfo --build=any -O../phyx_1.3+ds-1build1_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../phyx_1.3+ds-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-13T06:54:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ phyx_1.3+ds-1build1_riscv64.changes: ------------------------------------ Format: 1.8 Date: Mon, 13 Jun 2022 06:16:37 +0000 Source: phyx Binary: phyx Built-For-Profiles: noudeb Architecture: riscv64 Version: 1.3+ds-1build1 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: phyx - UNIX-style phylogenetic analyses on trees and sequences Changes: phyx (1.3+ds-1build1) kinetic; urgency=medium . * No-change rebuild against libarmadillo11 Checksums-Sha1: 0caa189eca0b42690eba4a69ed099872e0910739 48738660 phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb e5bdde254987cea788e259fe350448dbf53756cd 7891 phyx_1.3+ds-1build1_riscv64.buildinfo cfe810c472f62adcd5e8c249d70c05424dfd7e67 2318126 phyx_1.3+ds-1build1_riscv64.deb Checksums-Sha256: c349c88a984371239da0835e2ba07676e673bde2a170d983b91b3eef241f7755 48738660 phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb 8d5857e67f3ddb0b859342890bb9514f431c9d7411d37aef68920b8033bb6712 7891 phyx_1.3+ds-1build1_riscv64.buildinfo 22535f62b1a1bd3efad27f7d54dd6a1d9c79c58084b7d87bc584653f71c4f7f7 2318126 phyx_1.3+ds-1build1_riscv64.deb Files: 6583455aa3c57cd1df091540ba6fea8e 48738660 debug optional phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb 09a812bf0fde12e02118ab810c05b31b 7891 science optional phyx_1.3+ds-1build1_riscv64.buildinfo a26eef2c5616318da704562f2374dc36 2318126 science optional phyx_1.3+ds-1build1_riscv64.deb Original-Maintainer: Debian Med Packaging Team /<>/phyx_1.3+ds-1build1_riscv64.changes.new could not be renamed to /<>/phyx_1.3+ds-1build1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: phyx Binary: phyx phyx-dbgsym Architecture: riscv64 Version: 1.3+ds-1build1 Checksums-Md5: 6583455aa3c57cd1df091540ba6fea8e 48738660 phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb a26eef2c5616318da704562f2374dc36 2318126 phyx_1.3+ds-1build1_riscv64.deb Checksums-Sha1: 0caa189eca0b42690eba4a69ed099872e0910739 48738660 phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb cfe810c472f62adcd5e8c249d70c05424dfd7e67 2318126 phyx_1.3+ds-1build1_riscv64.deb Checksums-Sha256: c349c88a984371239da0835e2ba07676e673bde2a170d983b91b3eef241f7755 48738660 phyx-dbgsym_1.3+ds-1build1_riscv64.ddeb 22535f62b1a1bd3efad27f7d54dd6a1d9c79c58084b7d87bc584653f71c4f7f7 2318126 phyx_1.3+ds-1build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 13 Jun 2022 06:54:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38-4ubuntu1), binutils-common (= 2.38-4ubuntu1), binutils-riscv64-linux-gnu (= 2.38-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hdf5-helpers (= 1.10.7+repack-4ubuntu2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libarchive-zip-perl (= 1.68-1), libarmadillo-dev (= 1:11.1.1+dfsg-2), libarmadillo11 (= 1:11.1.1+dfsg-2), libarpack2 (= 3.8.0-1), libarpack2-dev (= 3.8.0-1), libasan6 (= 11.3.0-3ubuntu1), libatlas-cpp-0.6-3 (= 0.6.4-3), libatlas-cpp-0.6-dev (= 0.6.4-3), libatlas-cpp-0.6-tools (= 0.6.4-3), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38-4ubuntu1), libblas-dev (= 3.10.1-2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build6), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-4ubuntu1), libctf0 (= 2.38-4ubuntu1), libcurl4 (= 7.83.1-1ubuntu1), libcurl4-openssl-dev (= 7.83.1-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.1.0-2ubuntu1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.4-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgssapi-krb5-2 (= 1.19.2-2), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-dev (= 1.10.7+repack-4ubuntu2), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack-dev (= 3.10.1-2), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnlopt-cxx-dev (= 2.7.1-4build1), libnlopt-cxx0 (= 2.7.1-4build1), libnlopt-dev (= 2.7.1-4build1), libnlopt0 (= 2.7.1-4build1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.38.5-1), libssh-4 (= 0.9.6-2build1), libssl-dev (= 3.0.3-5ubuntu3), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-2), libsuperlu-dev (= 5.3.0+dfsg1-2), libsuperlu5 (= 5.3.0+dfsg1-2), libsystemd0 (= 249.11-0ubuntu4), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-35.36+22.10.1), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 26), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.4-0ubuntu2), python3-minimal (= 3.10.4-0ubuntu2), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1655100997" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ phyx_1.3+ds-1build1_riscv64.deb ------------------------------- new Debian package, version 2.0. size 2318126 bytes: control archive=5038 bytes. 1428 bytes, 23 lines control 12472 bytes, 175 lines md5sums Package: phyx Version: 1.3+ds-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 15434 Depends: libarmadillo11 (>= 1:11.1.1+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 4.9), libnlopt0 (>= 2.6.1), libstdc++6 (>= 11), python3 Section: science Priority: optional Homepage: https://github.com/FePhyFoFum/phyx Description: UNIX-style phylogenetic analyses on trees and sequences phyx provides a convenient, lightweight and inclusive toolkit consisting of programs spanning the wide breadth of programs utilized by researchers performing phylogenomic analyses. Modeled after Unix/GNU/Linux command line tools, individual programs perform a single task and operate on standard I/O streams. A result of this stream-centric approach is that, for most programs, only a single sequence or tree is in memory at any moment. Thus, large datasets can be processed with minimal memory requirements. phyx’s ever-growing complement of programs consists of over 35 programs focused on exploring, manipulating, analyzing and simulating phylogenetic objects (alignments, trees and MCMC logs). As with standard Unix command line tools, these programs can be piped (together with non-phyx tools), allowing the easy construction of efficient analytical pipelines. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2022-06-13 06:16 ./ drwxr-xr-x root/root 0 2022-06-13 06:16 ./usr/ drwxr-xr-x root/root 0 2022-06-13 06:16 ./usr/bin/ -rwxr-xr-x root/root 287296 2022-06-13 06:16 ./usr/bin/pxaa2cdn -rwxr-xr-x root/root 246552 2022-06-13 06:16 ./usr/bin/pxbdfit -rwxr-xr-x root/root 246416 2022-06-13 06:16 ./usr/bin/pxbdsim -rwxr-xr-x root/root 254544 2022-06-13 06:16 ./usr/bin/pxboot -rwxr-xr-x root/root 258696 2022-06-13 06:16 ./usr/bin/pxbp -rwxr-xr-x root/root 258640 2022-06-13 06:16 ./usr/bin/pxcat -rwxr-xr-x root/root 258624 2022-06-13 06:16 ./usr/bin/pxclsq -rwxr-xr-x root/root 234096 2022-06-13 06:16 ./usr/bin/pxcltr -rwxr-xr-x root/root 234096 2022-06-13 06:16 ./usr/bin/pxcolt -rwxr-xr-x root/root 250448 2022-06-13 06:16 ./usr/bin/pxcomp -rwxr-xr-x root/root 242240 2022-06-13 06:16 ./usr/bin/pxconsq -rwxr-xr-x root/root 591288 2022-06-13 06:16 ./usr/bin/pxcontrates -rwxr-xr-x root/root 242240 2022-06-13 06:16 ./usr/bin/pxfqfilt -rwxr-xr-x root/root 262808 2022-06-13 06:16 ./usr/bin/pxlog -rwxr-xr-x root/root 270920 2022-06-13 06:16 ./usr/bin/pxlssq -rwxr-xr-x root/root 238184 2022-06-13 06:16 ./usr/bin/pxlstr -rwxr-xr-x root/root 234104 2022-06-13 06:16 ./usr/bin/pxmono -rwxr-xr-x root/root 234104 2022-06-13 06:16 ./usr/bin/pxmrca -rwxr-xr-x root/root 234104 2022-06-13 06:16 ./usr/bin/pxmrcacut -rwxr-xr-x root/root 238216 2022-06-13 06:16 ./usr/bin/pxmrcaname -rwxr-xr-x root/root 340640 2022-06-13 06:16 ./usr/bin/pxnj -rwxr-xr-x root/root 246384 2022-06-13 06:16 ./usr/bin/pxnw -rwxr-xr-x root/root 238200 2022-06-13 06:16 ./usr/bin/pxpoly -rwxr-xr-x root/root 262736 2022-06-13 06:16 ./usr/bin/pxrecode -rwxr-xr-x root/root 258680 2022-06-13 06:16 ./usr/bin/pxrevcomp -rwxr-xr-x root/root 344728 2022-06-13 06:16 ./usr/bin/pxrls -rwxr-xr-x root/root 340624 2022-06-13 06:16 ./usr/bin/pxrlt -rwxr-xr-x root/root 229992 2022-06-13 06:16 ./usr/bin/pxrmk -rwxr-xr-x root/root 258624 2022-06-13 06:16 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./usr/share/man/man1/pxt2new.1.gz -rw-r--r-- root/root 660 2022-06-13 06:16 ./usr/share/man/man1/pxt2nex.1.gz -rw-r--r-- root/root 751 2022-06-13 06:16 ./usr/share/man/man1/pxtcol.1.gz -rw-r--r-- root/root 672 2022-06-13 06:16 ./usr/share/man/man1/pxtcomb.1.gz -rw-r--r-- root/root 741 2022-06-13 06:16 ./usr/share/man/man1/pxtgen.1.gz -rw-r--r-- root/root 808 2022-06-13 06:16 ./usr/share/man/man1/pxtlate.1.gz -rw-r--r-- root/root 790 2022-06-13 06:16 ./usr/share/man/man1/pxtrt.1.gz -rw-r--r-- root/root 744 2022-06-13 06:16 ./usr/share/man/man1/pxtscale.1.gz -rw-r--r-- root/root 687 2022-06-13 06:16 ./usr/share/man/man1/pxupgma.1.gz -rw-r--r-- root/root 703 2022-06-13 06:16 ./usr/share/man/man1/pxvcf2fa.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 581580 Build-Time: 1506 Distribution: kinetic-proposed Host Architecture: riscv64 Install-Time: 288 Job: phyx_1.3+ds-1build1.dsc Machine Architecture: riscv64 Package: phyx Package-Time: 1823 Source-Version: 1.3+ds-1build1 Space: 581580 Status: successful Version: 1.3+ds-1build1 -------------------------------------------------------------------------------- Finished at 2022-06-13T06:54:48Z Build needed 00:30:23, 581580k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 Scanning for processes to kill in build PACKAGEBUILD-23845389 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 Stopping target for build PACKAGEBUILD-23845389 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=kinetic --arch=riscv64 PACKAGEBUILD-23845389 Removing build PACKAGEBUILD-23845389