picard-tools 2.18.25+dfsg-2 source package in Ubuntu

Changelog

picard-tools (2.18.25+dfsg-2) unstable; urgency=medium

  * Architecture amd64 (for libpicard-java and picard-tools)
    Closes: #921185
  * Remove trailing whitespace in debian/changelog

 -- Andreas Tille <email address hidden>  Sun, 03 Feb 2019 08:53:09 +0100

Upload details

Uploaded by:
Debian Med on 2019-02-04
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release on 2019-10-18 universe science
Eoan release on 2019-04-18 universe science
Disco release on 2019-03-04 universe science

Builds

Disco: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
picard-tools_2.18.25+dfsg-2.dsc 2.6 KiB 2bfc5cc0be341179e210df23b8533a9be31e3cb378c5f34924d61a7f4ac2e353
picard-tools_2.18.25+dfsg.orig.tar.xz 18.2 MiB 9b1b2752ea9c03ea65aa70f5a25cbe9e0986cdb5477ace7ace713d513f7f4e02
picard-tools_2.18.25+dfsg-2.debian.tar.xz 16.4 KiB d58ec215994012cf765d26a4278fa475ab563f40ae46e05c3633db46f6f9e479

No changes file available.

Binary packages built by this source

libpicard-java: Java library to manipulate SAM and BAM files

 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. This library provides classes to
 manipulate SAM and BAM files.
 .
 A command line wrapper for this library is provided in the picard-tools
 package.

libpicard-java-doc: Documentation for the java picard library

 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. The picard java library provides classes
 to manipulate SAM and BAM files.
 .
 This package contains the javadoc of the picard java library.

picard-tools: Command line tools to manipulate SAM and BAM files

 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. Picard Tools includes these
 utilities to manipulate SAM and BAM files:
  AddCommentsToBam FifoBuffer
  AddOrReplaceReadGroups FilterSamReads
  BaitDesigner FilterVcf
  BamIndexStats FixMateInformation
  BamToBfq GatherBamFiles
  BedToIntervalList GatherVcfs
  BuildBamIndex GenotypeConcordance
  CalculateHsMetrics IlluminaBasecallsToFastq
  CalculateReadGroupChecksum IlluminaBasecallsToSam
  CheckIlluminaDirectory LiftOverIntervalList
  CheckTerminatorBlock LiftoverVcf
  CleanSam MakeSitesOnlyVcf
  CollectAlignmentSummaryMetrics MarkDuplicates
  CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar
  CollectGcBiasMetrics MarkIlluminaAdapters
  CollectHiSeqXPfFailMetrics MeanQualityByCycle
  CollectIlluminaBasecallingMetrics MergeBamAlignment
  CollectIlluminaLaneMetrics MergeSamFiles
  CollectInsertSizeMetrics MergeVcfs
  CollectJumpingLibraryMetrics NormalizeFasta
  CollectMultipleMetrics PositionBasedDownsampleSam
  CollectOxoGMetrics QualityScoreDistribution
  CollectQualityYieldMetrics RenameSampleInVcf
  CollectRawWgsMetrics ReorderSam
  CollectRnaSeqMetrics ReplaceSamHeader
  CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar
  CollectSequencingArtifactMetrics RevertSam
  CollectTargetedPcrMetrics SamFormatConverter
  CollectVariantCallingMetrics SamToFastq
  CollectWgsMetrics ScatterIntervalsByNs
  CompareMetrics SortSam
  CompareSAMs SortVcf
  ConvertSequencingArtifactToOxoG SplitSamByLibrary
  CreateSequenceDictionary SplitVcfs
  DownsampleSam UpdateVcfSequenceDictionary
  EstimateLibraryComplexity ValidateSamFile
  ExtractIlluminaBarcodes VcfFormatConverter
  ExtractSequences VcfToIntervalList
  FastqToSam ViewSam