pilon 1.23+dfsg-2 source package in Ubuntu


pilon (1.23+dfsg-2) unstable; urgency=medium

  * Team upload.

  [ Steffen Möller ]
  * Added ref to conda

  [ Pranav Ballaney ]
  * Add test and reference data
  * Add autopkgtests
  * Install docs and examples

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,

 -- Pranav Ballaney <email address hidden>  Wed, 17 Jun 2020 08:22:05 +0200

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Uploaded by:
Debian Med
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Impish release universe misc
Hirsute release universe misc
Groovy release universe misc


Groovy: [FULLYBUILT] amd64


File Size SHA-256 Checksum
pilon_1.23+dfsg-2.dsc 2.0 KiB 8512155723a44efb9f0045a64b23754883f9f0a9bec649d8f9c24e11bb99e7c6
pilon_1.23+dfsg.orig.tar.xz 40.6 KiB b7b2017f4dea73a639d149a2427d5706a602771052d4abc05cbe00d4e32b24c5
pilon_1.23+dfsg-2.debian.tar.xz 81.6 KiB f9a88b7394410cc20d70f42c1d5e08cd56883d81b8246b8827cb18489d63ee59

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Binary packages built by this source

pilon: automated genome assembly improvement and variant detection tool

 Pilon is a software tool which can be used to:
  * Automatically improve draft assemblies
  * Find variation among strains, including large event detection
 Pilon requires as input a FASTA file of the genome along with one or more
 BAM files of reads aligned to the input FASTA file. Pilon uses read
 alignment analysis to identify inconsistencies between the input genome and
 the evidence in the reads. It then attempts to make improvements to the
 input genome, including:
  * Single base differences
  * Small indels
  * Larger indel or block substitution events
  * Gap filling
  * Identification of local misassemblies, including optional opening
    of new gaps