https://launchpad.net/ubuntu/+source/pinfish/0.1.0+ds-2/+build/20276115 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-048 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:09:19 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 10 Nov 17:23:22 ntpdate[1626]: adjust time server 10.211.37.1 offset -0.000414 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=arm64 PACKAGEBUILD-20276115 --image-type chroot /home/buildd/filecache-default/d1fb963478283f19fe8f83381d93195a7691df38 Creating target for build PACKAGEBUILD-20276115 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=arm64 PACKAGEBUILD-20276115 Starting target for build PACKAGEBUILD-20276115 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=arm64 PACKAGEBUILD-20276115 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20276115 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=arm64 PACKAGEBUILD-20276115 Updating target for build PACKAGEBUILD-20276115 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main arm64 Packages [1354 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe arm64 Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5332 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 Packages [219 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [89.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 Packages [1879 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [659 kB] Fetched 23.1 MB in 8s (2730 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.32 perl-modules-5.32 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common coreutils cpp-10 fakeroot g++-10 gcc-10 gcc-10-base grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libidn2-0 libip4tc2 libitm1 liblsan0 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 71 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 852 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libcrypt-dev arm64 1:4.4.17-1ubuntu1 [109 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libcrypt1 arm64 1:4.4.17-1ubuntu1 [80.8 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libc6-dev arm64 2.32-0ubuntu4 [1723 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libc-dev-bin arm64 2.32-0ubuntu4 [28.7 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 linux-libc-dev arm64 5.8.0-26.27 [1146 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libtirpc-dev arm64 1.2.6-3 [185 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libtirpc3 arm64 1.2.6-3 [73.4 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libcc1-0 arm64 10.2.0-16ubuntu1 [37.2 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 gcc-10-base arm64 10.2.0-16ubuntu1 [19.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libgcc-s1 arm64 10.2.0-16ubuntu1 [34.6 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libgomp1 arm64 10.2.0-16ubuntu1 [93.7 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libitm1 arm64 10.2.0-16ubuntu1 [24.2 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libatomic1 arm64 10.2.0-16ubuntu1 [9832 B] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libasan6 arm64 10.2.0-16ubuntu1 [317 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 liblsan0 arm64 10.2.0-16ubuntu1 [130 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libtsan0 arm64 10.2.0-16ubuntu1 [302 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libubsan1 arm64 10.2.0-16ubuntu1 [127 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 g++-10 arm64 10.2.0-16ubuntu1 [65.5 MB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libstdc++-10-dev arm64 10.2.0-16ubuntu1 [1716 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libgcc-10-dev arm64 10.2.0-16ubuntu1 [911 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 gcc-10 arm64 10.2.0-16ubuntu1 [66.8 MB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 cpp-10 arm64 10.2.0-16ubuntu1 [59.3 MB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libstdc++6 arm64 10.2.0-16ubuntu1 [461 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libmpc3 arm64 1.2.0-1 [42.3 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libctf-nobfd0 arm64 2.35.1-2ubuntu1 [44.9 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libctf0 arm64 2.35.1-2ubuntu1 [43.9 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libbinutils arm64 2.35.1-2ubuntu1 [483 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 binutils-common arm64 2.35.1-2ubuntu1 [212 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 binutils arm64 2.35.1-2ubuntu1 [3372 B] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.35.1-2ubuntu1 [2027 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libc6 arm64 2.32-0ubuntu4 [2247 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main arm64 base-files arm64 11ubuntu16 [60.4 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 bash arm64 5.1~rc2-1ubuntu1 [638 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 coreutils arm64 8.32-4ubuntu1 [1258 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 grep arm64 3.6-1 [147 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libncursesw6 arm64 6.2+20200918-1 [120 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libncurses6 arm64 6.2+20200918-1 [92.4 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libtinfo6 arm64 6.2+20200918-1 [81.9 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 ncurses-bin arm64 6.2+20200918-1 [168 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 perl-modules-5.32 all 5.32.0-4 [2753 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libperl5.32 arm64 5.32.0-4 [3890 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 perl arm64 5.32.0-4 [225 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 perl-base arm64 5.32.0-4 [1430 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libdebconfclient0 arm64 0.255ubuntu1 [6132 B] Get:46 http://ftpmaster.internal/ubuntu hirsute/main arm64 base-passwd arm64 3.5.48 [46.6 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libc-bin arm64 2.32-0ubuntu4 [520 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 ncurses-base all 6.2+20200918-1 [18.7 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main arm64 sysvinit-utils arm64 2.96-5ubuntu1 [20.4 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libgcrypt20 arm64 1.8.7-2ubuntu1 [354 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 systemd-timesyncd arm64 246.6-2ubuntu1 [26.4 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 systemd-sysv arm64 246.6-2ubuntu1 [10.3 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libapparmor1 arm64 3.0.0-0ubuntu3 [35.1 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main arm64 libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main arm64 libaudit1 arm64 1:2.8.5-3ubuntu2 [38.2 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main arm64 libcap2 arm64 1:2.44-1 [16.7 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main arm64 libidn2-0 arm64 2.3.0-2 [51.3 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libip4tc2 arm64 1.8.5-3ubuntu3 [18.3 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main arm64 libseccomp2 arm64 2.4.3-1ubuntu5 [42.7 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 systemd arm64 246.6-2ubuntu1 [3831 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libsystemd0 arm64 246.6-2ubuntu1 [251 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libudev1 arm64 246.6-2ubuntu1 [61.9 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main arm64 libapt-pkg6.0 arm64 2.1.11 [764 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main arm64 apt arm64 2.1.11 [1247 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main arm64 libselinux1 arm64 3.1-2build1 [65.5 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsemanage-common all 3.1-1build1 [10.1 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsemanage1 arm64 3.1-1build1 [80.8 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 readline-common all 8.1~rc2-2 [54.1 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libreadline8 arm64 8.1~rc2-2 [129 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main arm64 tzdata all 2020d-1ubuntu1 [293 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libfakeroot arm64 1.25.3-1 [26.6 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 fakeroot arm64 1.25.3-1 [62.4 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main arm64 libnpth0 arm64 1.6-3 [7824 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 223 MB in 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Setting up binutils-common:arm64 (2.35.1-2ubuntu1) ... Setting up linux-libc-dev:arm64 (5.8.0-26.27) ... Setting up libctf-nobfd0:arm64 (2.35.1-2ubuntu1) ... Setting up libnpth0:arm64 (1.6-3) ... Setting up libgomp1:arm64 (10.2.0-16ubuntu1) ... Setting up libcap2:arm64 (1:2.44-1) ... Setting up libfakeroot:arm64 (1.25.3-1) ... Setting up libasan6:arm64 (10.2.0-16ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 10 17:25:17 UTC 2020. Universal Time is now: Tue Nov 10 17:25:17 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libncurses6:arm64 (6.2+20200918-1) ... Setting up libmpc3:arm64 (1.2.0-1) ... Setting up libatomic1:arm64 (10.2.0-16ubuntu1) ... Setting up libncursesw6:arm64 (6.2+20200918-1) ... Setting up libperl5.32:arm64 (5.32.0-4) ... Setting up libubsan1:arm64 (10.2.0-16ubuntu1) ... Setting up libcrypt-dev:arm64 (1:4.4.17-1ubuntu1) ... Setting up libbinutils:arm64 (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu4) ... Setting up readline-common (8.1~rc2-2) ... Setting up libcc1-0:arm64 (10.2.0-16ubuntu1) ... Setting up liblsan0:arm64 (10.2.0-16ubuntu1) ... Setting up cpp-10 (10.2.0-16ubuntu1) ... Setting up libitm1:arm64 (10.2.0-16ubuntu1) ... Setting up libtsan0:arm64 (10.2.0-16ubuntu1) ... Setting up libctf0:arm64 (2.35.1-2ubuntu1) ... Setting up libtirpc3:arm64 (1.2.6-3) ... Setting up libgcc-10-dev:arm64 (10.2.0-16ubuntu1) ... Setting up libreadline8:arm64 (8.1~rc2-2) ... Setting up binutils-aarch64-linux-gnu (2.35.1-2ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up perl (5.32.0-4) ... Setting up libtirpc-dev:arm64 (1.2.6-3) ... Setting up gcc-10 (10.2.0-16ubuntu1) ... Setting up libc6-dev:arm64 (2.32-0ubuntu4) ... Setting up libstdc++-10-dev:arm64 (10.2.0-16ubuntu1) ... Setting up g++-10 (10.2.0-16ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20276115 arm64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20276115 --arch=arm64 --dist=hirsute-proposed --nolog pinfish_0.1.0+ds-2.dsc Initiating build PACKAGEBUILD-20276115 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:09:19 UTC 2020 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-048.buildd +==============================================================================+ | pinfish 0.1.0+ds-2 (arm64) Tue, 10 Nov 2020 17:25:22 +0000 | +==============================================================================+ Package: pinfish Version: 0.1.0+ds-2 Source Version: 0.1.0+ds-2 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20276115/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pinfish_0.1.0+ds-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/pinfish-Nv8EQI/pinfish-0.1.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/pinfish-Nv8EQI' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-0MiUSs/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-0MiUSs/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0MiUSs/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-0MiUSs/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0MiUSs/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-0MiUSs/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (29.1 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 860 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-0MiUSs/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [860 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 B in 0s (21.6 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14898 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools Filtered Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools dpkg-deb: building package 'sbuild-build-depends-pinfish-dummy' in '/<>/resolver-0MiUSs/apt_archive/sbuild-build-depends-pinfish-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pinfish-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-0MiUSs/apt_archive ./ InRelease Get:2 copy:/<>/resolver-0MiUSs/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-0MiUSs/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-0MiUSs/apt_archive ./ Sources [538 B] Get:5 copy:/<>/resolver-0MiUSs/apt_archive ./ Packages [622 B] Fetched 2123 B in 0s (22.5 kB/s) Reading package lists... Reading package lists... Install pinfish build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext gettext-base golang-1.15-go golang-1.15-src golang-any golang-github-biogo-biogo-dev golang-github-biogo-hts-dev golang-github-google-uuid-dev golang-github-kr-pretty-dev golang-github-kr-pty-dev golang-github-kr-text-dev golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev golang-src groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbrotli1 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db po-debconf samtools Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev bzr | brz git mercurial subversion groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl cwltool Recommended packages: curl | wget | lynx pkg-config libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext gettext-base golang-1.15-go golang-1.15-src golang-any golang-github-biogo-biogo-dev golang-github-biogo-hts-dev golang-github-google-uuid-dev golang-github-kr-pretty-dev golang-github-kr-pty-dev golang-github-kr-text-dev golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev golang-src groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbrotli1 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu67 libkrb5-26-heimdal libldap-2.4-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db po-debconf samtools sbuild-build-depends-pinfish-dummy 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After this operation, 435 MB of additional disk space will be used. Get:1 copy:/<>/resolver-0MiUSs/apt_archive ./ sbuild-build-depends-pinfish-dummy 0.invalid.0 [908 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main arm64 bsdextrautils arm64 2.36-3ubuntu1 [74.2 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main arm64 libuchardet0 arm64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main arm64 groff-base arm64 1.22.4-5 [797 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main arm64 libpipeline1 arm64 1.5.3-1 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main arm64 man-db arm64 2.9.3-2 [1100 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main arm64 libmagic-mgc arm64 1:5.38-5 [218 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main arm64 libmagic1 arm64 1:5.38-5 [71.6 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main arm64 file arm64 1:5.38-5 [23.3 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libelf1 arm64 0.182-1 [43.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libglib2.0-0 arm64 2.66.2-1 [1215 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main arm64 libicu67 arm64 67.1-4 [8461 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libxml2 arm64 2.9.10+dfsg-6.2 [558 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main arm64 gettext-base arm64 0.19.8.1-10build1 [48.2 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main arm64 libpsl5 arm64 0.21.0-1.1ubuntu1 [52.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsigsegv2 arm64 2.12-2build1 [13.7 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main arm64 autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main arm64 automake all 1:1.16.2-4ubuntu1 [548 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main arm64 autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main arm64 libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main arm64 dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main arm64 libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu hirsute/main arm64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main arm64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:29 http://ftpmaster.internal/ubuntu hirsute/main arm64 dwz arm64 0.13-5 [134 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main arm64 gettext arm64 0.19.8.1-10build1 [850 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main arm64 po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main arm64 debhelper all 13.2.1ubuntu1 [879 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main arm64 golang-1.15-src arm64 1.15.2-1ubuntu1 [13.8 MB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main arm64 golang-1.15-go arm64 1.15.2-1ubuntu1 [43.0 MB] Get:37 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 golang-src arm64 2:1.15~1 [4088 B] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 golang-go arm64 2:1.15~1 [22.0 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 golang-any arm64 2:1.15~1 [3032 B] Get:40 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-ulikunitz-xz-dev all 0.5.6-1 [351 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-biogo-hts-dev all 1.1.0+dfsg1-2 [292 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-kr-pty-dev all 1.1.6-1build1 [10.3 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-kr-text-dev all 0.1.0-2 [10.9 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 golang-github-kr-pretty-dev all 0.2.1+git20200831.59b4212-1 [14.7 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [31.7 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-biogo-biogo-dev all 1.0.2-2 [188 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/universe arm64 golang-github-google-uuid-dev all 1.1.1-1 [14.1 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main arm64 libroken18-heimdal arm64 7.7.0+dfsg-2 [39.4 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main arm64 libasn1-8-heimdal arm64 7.7.0+dfsg-2 [150 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main arm64 libbrotli1 arm64 1.0.9-2build1 [276 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main arm64 libheimbase1-heimdal arm64 7.7.0+dfsg-2 [27.9 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main arm64 libhcrypto4-heimdal arm64 7.7.0+dfsg-2 [84.8 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main arm64 libwind0-heimdal arm64 7.7.0+dfsg-2 [47.2 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main arm64 libhx509-5-heimdal arm64 7.7.0+dfsg-2 [98.6 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main arm64 libkrb5-26-heimdal arm64 7.7.0+dfsg-2 [192 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main arm64 libheimntlm0-heimdal arm64 7.7.0+dfsg-2 [14.8 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main arm64 libgssapi3-heimdal arm64 7.7.0+dfsg-2 [88.4 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2ubuntu1 [14.9 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2ubuntu1 [48.4 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libldap-2.4-2 arm64 2.4.53+dfsg-1ubuntu4 [147 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main arm64 libnghttp2-14 arm64 1.41.0-3 [64.6 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build2 [53.1 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main arm64 libssh-4 arm64 0.9.4-1ubuntu3 [161 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute-proposed/main arm64 libcurl3-gnutls arm64 7.72.0-1ubuntu1 [215 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe arm64 libdeflate0 arm64 1.6-1 [51.1 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 libhts3 arm64 1.11-2 [314 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute-proposed/universe arm64 samtools arm64 1.11-1 [495 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main arm64 dh-golang all 1.49 [20.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.1 MB in 3s (22.4 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up file (1:5.38-5) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:arm64 (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up golang-github-kr-pty-dev (1.1.6-1build1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:arm64 (0.9.4-1ubuntu3) ... Setting up libroken18-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up golang-github-google-uuid-dev (1.1.1-1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up golang-src:arm64 (2:1.15~1) ... Setting up golang-1.15-go (1.15.2-1ubuntu1) ... Setting up libelf1:arm64 (0.182-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.2) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-1) ... Setting up libheimbase1-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up golang-go (2:1.15~1) ... Setting up libasn1-8-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up golang-any:arm64 (2:1.15~1) ... Setting up libwind0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up golang-github-kr-text-dev (0.1.0-2) ... Setting up libcroco3:arm64 (0.6.13-1) ... Setting up golang-github-biogo-hts-dev (1.1.0+dfsg1-2) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up golang-github-kr-pretty-dev (0.2.1+git20200831.59b4212-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libhx509-5-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up golang-github-biogo-biogo-dev (1.0.2-2) ... Setting up libkrb5-26-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:arm64 (2.4.53+dfsg-1ubuntu4) ... Setting up libcurl3-gnutls:arm64 (7.72.0-1ubuntu1) ... Setting up libhts3:arm64 (1.11-2) ... Setting up samtools (1.11-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-golang (1.49) ... Setting up sbuild-build-depends-pinfish-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-122-generic arm64 (aarch64) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-16ubuntu1 gcc-10_10.2.0-16ubuntu1 libc6-dev_2.32-0ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc2-1ubuntu1 binutils_2.35.1-2ubuntu1 binutils-aarch64-linux-gnu_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-16ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-golang_1.49 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-16ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-16ubuntu1 gcc-10-base_10.2.0-16ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 golang-1.15-go_1.15.2-1ubuntu1 golang-1.15-src_1.15.2-1ubuntu1 golang-any_2:1.15~1 golang-github-biogo-biogo-dev_1.0.2-2 golang-github-biogo-hts-dev_1.1.0+dfsg1-2 golang-github-google-uuid-dev_1.1.1-1 golang-github-kr-pretty-dev_0.2.1+git20200831.59b4212-1 golang-github-kr-pty-dev_1.1.6-1build1 golang-github-kr-text-dev_0.1.0-2 golang-github-ulikunitz-xz-dev_0.5.6-1 golang-go_2:1.15~1 golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1 golang-src_2:1.15~1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu3 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-16ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblkid1_2.36-3ubuntu1 libbrotli1_1.0.9-2build1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu4 libc-dev-bin_2.32-0ubuntu4 libc6_2.32-0ubuntu4 libc6-dev_2.32-0ubuntu4 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcc1-0_10.2.0-16ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libcurl3-gnutls_7.72.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdeflate0_1.6-1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.182-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16ubuntu1 libgcc-s1_10.2.0-16ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-16ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.6-2 libhts3_1.11-2 libhx509-5-heimdal_7.7.0+dfsg-2 libicu67_67.1-4 libidn2-0_2.3.0-2 libip4tc2_1.8.5-3ubuntu3 libisl22_0.22.1-1 libitm1_10.2.0-16ubuntu1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libldap-2.4-2_2.4.53+dfsg-1ubuntu4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.0-16ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libreadline8_8.1~rc2-2 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu3 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libtsan0_10.2.0-16ubuntu1 libubsan1_10.2.0-16ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libwind0-heimdal_7.7.0+dfsg-2 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.32.0-4 perl-base_5.32.0-4 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1~rc2-2 rpcsvc-proto_1.4.2-0ubuntu4 samtools_1.11-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pinfish-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 10 09:27:35 2020 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pinfish_0.1.0+ds-2.dsc dpkg-source: info: extracting pinfish in /<>/pinfish-0.1.0+ds dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-gonum-stat-usage.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20276115 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20276115 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20276115 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary-arch dh binary-arch --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -a -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -a -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -a -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -a -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff internal/unsafeheader runtime/internal/sys internal/cpu runtime/internal/atomic internal/race runtime/internal/math sync/atomic internal/bytealg unicode unicode/utf8 math/bits internal/testlog crypto/internal/subtle math crypto/subtle internal/nettrace runtime/cgo runtime internal/reflectlite sync internal/singleflight math/rand errors sort io internal/oserror strconv vendor/golang.org/x/net/dns/dnsmessage syscall bytes strings reflect hash crypto hash/crc32 bufio github.com/biogo/biogo/feat internal/syscall/unix time internal/syscall/execenv github.com/biogo/biogo/feat/gene github.com/biogo/biogo/io/featio text/tabwriter container/heap context internal/poll os internal/fmtsort encoding/binary crypto/md5 crypto/cipher crypto/sha1 fmt crypto/aes net path/filepath os/exec io/ioutil flag github.com/biogo/biogo/alphabet encoding/csv math/big database/sql/driver github.com/biogo/biogo/seq encoding/hex github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/seqio/fasta log github.com/biogo/biogo/io/featio/gff compress/flate github.com/biogo/biogo/io/seqio/fastq net/url compress/gzip crypto/rand github.com/biogo/hts/bgzf runtime/pprof github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/bam github.com/nanoporetech/pinfish/spliced_bam2gff github.com/nanoporetech/pinfish/polish_clusters github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/<>/pinfish-0.1.0+ds' dh_auto_test cd _build && go test -vet=off -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] ? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files] cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam make[1]: Leaving directory '/<>/pinfish-0.1.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--builddirectory=_build -O--buildsystem=golang dh_prep -a -O--builddirectory=_build -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/<>/pinfish-0.1.0+ds' dh_auto_install -- --no-source cd _build && mkdir -p /<>/pinfish-0.1.0\+ds/debian/tmp/usr cd _build && cp -r bin /<>/pinfish-0.1.0\+ds/debian/tmp/usr make[1]: Leaving directory '/<>/pinfish-0.1.0+ds' dh_install -a -O--builddirectory=_build -O--buildsystem=golang dh_installdocs -a -O--builddirectory=_build -O--buildsystem=golang dh_installchangelogs -a -O--builddirectory=_build -O--buildsystem=golang dh_installman -a -O--builddirectory=_build -O--buildsystem=golang dh_installsystemduser -a -O--builddirectory=_build -O--buildsystem=golang dh_perl -a -O--builddirectory=_build -O--buildsystem=golang dh_link -a -O--builddirectory=_build -O--buildsystem=golang dh_strip_nondeterminism -a -O--builddirectory=_build -O--buildsystem=golang dh_compress -a -O--builddirectory=_build -O--buildsystem=golang dh_fixperms -a -O--builddirectory=_build -O--buildsystem=golang dh_missing -a -O--builddirectory=_build -O--buildsystem=golang dh_dwz -a -a -O--builddirectory=_build -O--buildsystem=golang dwz: debian/pinfish/usr/bin/cluster_gff: .debug_info section not present dwz: debian/pinfish/usr/bin/collapse_partials: .debug_info section not present dwz: debian/pinfish/usr/bin/polish_clusters: .debug_info section not present dwz: debian/pinfish/usr/bin/spliced_bam2gff: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -a -a -O--builddirectory=_build -O--buildsystem=golang dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/collapse_partials dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/cluster_gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff dh_makeshlibs -a -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -a -O--builddirectory=_build -O--buildsystem=golang dh_golang -a -O--builddirectory=_build -O--buildsystem=golang Use of uninitialized value $caller in string eq at /usr/share/perl5/Debian/Debhelper/Buildsystem/golang.pm line 567. dh_gencontrol -a -O--builddirectory=_build -O--buildsystem=golang dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Built-Using} unused, but is defined dh_md5sums -a -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -a -O--builddirectory=_build -O--buildsystem=golang INFO: pkgstriptranslations version 146 pkgstriptranslations: processing pinfish (in debian/pinfish); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/pinfish/DEBIAN/control, package pinfish, directory debian/pinfish pkgstripfiles: Running PNG optimization (using 4 cpus) for package pinfish ... pkgstripfiles: No PNG files. dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-2_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../pinfish_0.1.0+ds-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-10T17:28:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pinfish_0.1.0+ds-2_arm64.changes: --------------------------------- Format: 1.8 Date: Tue, 10 Nov 2020 14:51:27 +0530 Source: pinfish Binary: pinfish Architecture: arm64 Version: 0.1.0+ds-2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: pinfish - Collection of tools to annotate genomes using long read transcrip Changes: pinfish (0.1.0+ds-2) unstable; urgency=medium . * Limit testing to amd64 and arm64 for now * Source-only-upload for testing migration Checksums-Sha1: 91a9529316b9b5f2a7e3bce553fc5a96b517dfae 6737 pinfish_0.1.0+ds-2_arm64.buildinfo 07bd895ac631fbe9799d8a0b6e4ecc5309defb61 1206268 pinfish_0.1.0+ds-2_arm64.deb Checksums-Sha256: 5a8928dac15544dc3d21de5dba613848cfc178cfc5880c3c580e6e73148fabd5 6737 pinfish_0.1.0+ds-2_arm64.buildinfo 15c18fe074ec84e788ccbd22ee1a614d896b671a9f03783ed396cf4b71df2a24 1206268 pinfish_0.1.0+ds-2_arm64.deb Files: 6448355999d3576d61eb0bc044a4ac46 6737 science optional pinfish_0.1.0+ds-2_arm64.buildinfo 212f7afc66daab3f717b8f6d3687f60f 1206268 science optional pinfish_0.1.0+ds-2_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: pinfish Binary: pinfish Architecture: arm64 Version: 0.1.0+ds-2 Checksums-Md5: 212f7afc66daab3f717b8f6d3687f60f 1206268 pinfish_0.1.0+ds-2_arm64.deb Checksums-Sha1: 07bd895ac631fbe9799d8a0b6e4ecc5309defb61 1206268 pinfish_0.1.0+ds-2_arm64.deb Checksums-Sha256: 15c18fe074ec84e788ccbd22ee1a614d896b671a9f03783ed396cf4b71df2a24 1206268 pinfish_0.1.0+ds-2_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 10 Nov 2020 17:28:47 +0000 Build-Path: /<>/pinfish-0.1.0+ds Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc2-1ubuntu1), binutils (= 2.35.1-2ubuntu1), binutils-aarch64-linux-gnu (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-16ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-golang (= 1.49), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-16ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-16ubuntu1), gcc-10-base (= 10.2.0-16ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), golang-1.15-go (= 1.15.2-1ubuntu1), golang-1.15-src (= 1.15.2-1ubuntu1), golang-any (= 2:1.15~1), golang-github-biogo-biogo-dev (= 1.0.2-2), golang-github-biogo-hts-dev (= 1.1.0+dfsg1-2), golang-github-google-uuid-dev (= 1.1.1-1), golang-github-kr-pretty-dev (= 0.2.1+git20200831.59b4212-1), golang-github-kr-pty-dev (= 1.1.6-1build1), golang-github-kr-text-dev (= 0.1.0-2), golang-github-ulikunitz-xz-dev (= 0.5.6-1), golang-go (= 2:1.15~1), golang-gopkg-check.v1-dev (= 0.0+git20200902.038fdea-1), golang-src (= 2:1.15~1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-16ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-16ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbrotli1 (= 1.0.9-2build1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu4), libc-dev-bin (= 2.32-0ubuntu4), libc6 (= 2.32-0ubuntu4), libc6-dev (= 2.32-0ubuntu4), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-16ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libcurl3-gnutls (= 7.72.0-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdeflate0 (= 1.6-1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.182-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-16ubuntu1), libgcc-s1 (= 10.2.0-16ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.2-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-16ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libgssapi3-heimdal (= 7.7.0+dfsg-2), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhts3 (= 1.11-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-2), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-16ubuntu1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu4), liblsan0 (= 10.2.0-16ubuntu1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20200918-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-4), libpipeline1 (= 1.5.3-1), libpsl5 (= 0.21.0-1.1ubuntu1), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-16ubuntu1), libstdc++6 (= 10.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-2ubuntu1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-16ubuntu1), libubsan1 (= 10.2.0-16ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libwind0-heimdal (= 7.7.0+dfsg-2), libxml2 (= 2.9.10+dfsg-6.2), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), patch (= 2.7.6-6), perl (= 5.32.0-4), perl-base (= 5.32.0-4), perl-modules-5.32 (= 5.32.0-4), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605000087" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pinfish_0.1.0+ds-2_arm64.deb ---------------------------- new Debian package, version 2.0. size 1206268 bytes: control archive=1456 bytes. 1730 bytes, 39 lines control 666 bytes, 10 lines md5sums Package: pinfish Version: 0.1.0+ds-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8248 Depends: libc6 (>= 2.32), minimap2, racon Section: science Priority: optional Homepage: https://github.com/nanoporetech/pinfish Description: Collection of tools to annotate genomes using long read transcriptomics data The toolchain is composed of the following tools: 1. spliced_bam2gff - a tool for converting sorted BAM files containing spliced alignments into GFF2 format. Each read will be represented as a distinct transcript. This tool comes handy when visualizing spliced reads at particular loci and to provide input to the rest of the toolchain. . 2. cluster_gff - this tool takes a sorted GFF2 file as input and clusters together reads having similar exon/intron structure and creates a rough consensus of the clusters by taking the median of exon boundaries from all transcripts in the cluster. . 3. polish_clusters - this tool takes the cluster definitions generated by cluster_gff and for each cluster creates an error corrected read by mapping all reads on the read with the median length and polishing it using racon. The polished reads can be mapped to the genome using minimap2 or GMAP. . 4. collapse_partials - this tool takes GFFs generated by either cluster_gff or polish_clusters and filters out transcripts which are likely to be based on RNA degradation products from the 5' end. The tool clusters the input transcripts into "loci" by the 3' ends and discards transcripts which have a compatible transcripts in the loci with more exons. drwxr-xr-x root/root 0 2020-11-10 09:21 ./ drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/ drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/bin/ -rwxr-xr-x root/root 2143384 2020-11-10 09:21 ./usr/bin/cluster_gff -rwxr-xr-x root/root 2143384 2020-11-10 09:21 ./usr/bin/collapse_partials -rwxr-xr-x root/root 2136056 2020-11-10 09:21 ./usr/bin/polish_clusters -rwxr-xr-x root/root 2004056 2020-11-10 09:21 ./usr/bin/spliced_bam2gff drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/share/ drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/share/doc/pinfish/ -rw-r--r-- root/root 246 2020-11-10 09:21 ./usr/share/doc/pinfish/changelog.Debian.gz -rw-r--r-- root/root 1213 2020-11-10 09:11 ./usr/share/doc/pinfish/copyright drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-10 09:21 ./usr/share/man/man1/ -rw-r--r-- root/root 532 2020-11-10 09:21 ./usr/share/man/man1/cluster_gff.1.gz -rw-r--r-- root/root 536 2020-11-10 09:21 ./usr/share/man/man1/collapse_partials.1.gz -rw-r--r-- root/root 548 2020-11-10 09:21 ./usr/share/man/man1/polish_clusters.1.gz -rw-r--r-- root/root 482 2020-11-10 09:21 ./usr/share/man/man1/spliced_bam2gff.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 102 Distribution: hirsute-proposed Host Architecture: arm64 Install-Time: 80 Job: pinfish_0.1.0+ds-2.dsc Machine Architecture: arm64 Package: pinfish Package-Time: 207 Source-Version: 0.1.0+ds-2 Space: n/a Status: successful Version: 0.1.0+ds-2 -------------------------------------------------------------------------------- Finished at 2020-11-10T17:28:49Z Build needed 00:03:27, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=arm64 PACKAGEBUILD-20276115 Scanning for processes to kill in build PACKAGEBUILD-20276115