https://launchpad.net/ubuntu/+source/pizzly/0.37.3+ds-8/+build/24873939 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-013 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:02:06 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 27 Nov 05:26:04 ntpdate[1906]: adjust time server 10.131.248.1 offset 0.000215 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24873939 --image-type chroot /home/buildd/filecache-default/b509365b3a13e4aa6176e31a361b75cab8d51910 Creating target for build PACKAGEBUILD-24873939 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24873939 Starting target for build PACKAGEBUILD-24873939 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24873939 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24873939 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24873939 Updating target for build PACKAGEBUILD-24873939 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [251 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main amd64 Packages [1389 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe amd64 Packages [14.7 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5840 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 Packages [339 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [123 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 Packages [1762 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [696 kB] Fetched 25.8 MB in 3s (10.1 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: advancecomp apt binutils binutils-common binutils-x86-64-linux-gnu debianutils e2fsprogs fakeroot gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libassuan0 libaudit-common libaudit1 libbinutils libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libext2fs2 libfakeroot libffi8 libgpg-error0 libgprofng0 libgssapi-krb5-2 libip4tc2 libjson-c5 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libreadline8 libseccomp2 libselinux1 libsqlite3-0 libss2 libssl3 linux-libc-dev login logsave openssl passwd perl perl-base pinentry-curses readline-common tar usrmerge xz-utils zlib1g 65 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 MB of archives. After this operation, 46.7 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 debianutils amd64 5.7-0.4 [103 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 grep amd64 3.8-3 [159 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 login amd64 1:4.13+dfsg1-1ubuntu1 [199 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libperl5.36 amd64 5.36.0-4ubuntu2 [4808 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl amd64 5.36.0-4ubuntu2 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 perl-base amd64 5.36.0-4ubuntu2 [1779 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt-dev amd64 1:4.4.33-1 [113 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcrypt1 amd64 1:4.4.33-1 [80.8 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g amd64 1:1.2.13.dfsg-1ubuntu2 [61.1 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 tar amd64 1.34+dfsg-1.1 [292 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 usrmerge all 33ubuntu1 [57.0 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 init-system-helpers all 1.65.2 [38.1 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblz4-1 amd64 1.9.4-1 [63.1 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 liblzma5 amd64 5.2.8-0.0 [102 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapt-pkg6.0 amd64 2.5.4 [902 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgpg-error0 amd64 1.46-1 [68.9 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgv amd64 2.2.40-1ubuntu1 [137 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libseccomp2 amd64 2.5.4-1ubuntu2 [46.2 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 apt amd64 2.5.4 [1378 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcap-ng0 amd64 0.8.3-1build1 [15.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libaudit1 amd64 1:3.0.7-1ubuntu2 [45.4 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpam0g amd64 1.5.2-5ubuntu1 [60.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libselinux1 amd64 3.4-1build1 [77.9 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpam-modules-bin amd64 1.5.2-5ubuntu1 [45.5 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpam-modules amd64 1.5.2-5ubuntu1 [282 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 logsave amd64 1.46.6~rc1-1ubuntu1 [10.5 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libext2fs2 amd64 1.46.6~rc1-1ubuntu1 [207 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 e2fsprogs amd64 1.46.6~rc1-1ubuntu1 [590 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 init amd64 1.65.2 [4808 B] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpam-runtime all 1.5.2-5ubuntu1 [40.0 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 passwd amd64 1:4.13+dfsg1-1ubuntu1 [842 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libffi8 amd64 3.4.4-1 [23.8 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcom-err2 amd64 1.46.6~rc1-1ubuntu1 [9650 B] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libss2 amd64 1.46.6~rc1-1ubuntu1 [12.2 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libapparmor1 amd64 3.0.7-1ubuntu4 [36.7 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libjson-c5 amd64 0.16-2 [32.8 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libssl3 amd64 3.0.5-2ubuntu2 [1893 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main amd64 libcryptsetup12 amd64 2:2.5.0-6ubuntu1 [222 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgssapi-krb5-2 amd64 1.20.1-1 [142 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libkrb5-3 amd64 1.20.1-1 [346 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libkrb5support0 amd64 1.20.1-1 [31.4 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libk5crypto3 amd64 1.20.1-1 [81.1 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libip4tc2 amd64 1.8.7-1ubuntu7 [19.7 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 readline-common all 8.2-1.2 [55.2 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libreadline8 amd64 8.2-1.2 [150 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsqlite3-0 amd64 3.40.0-1 [653 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 openssl amd64 3.0.5-2ubuntu2 [1178 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libpng16-16 amd64 1.6.39-1 [186 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 xz-utils amd64 5.2.8-0.0 [142 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main amd64 advancecomp amd64 2.4-1 [180 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf-nobfd0 amd64 2.39-8ubuntu2 [99.9 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libgprofng0 amd64 2.39-8ubuntu2 [897 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libctf0 amd64 2.39-8ubuntu2 [97.4 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.39-8ubuntu2 [2402 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbinutils amd64 2.39-8ubuntu2 [610 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils amd64 2.39-8ubuntu2 [3240 B] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 binutils-common amd64 2.39-8ubuntu2 [233 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libfakeroot amd64 1.30.1-1ubuntu1 [30.9 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 fakeroot amd64 1.30.1-1ubuntu1 [60.1 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libassuan0 amd64 2.5.5-5 [37.2 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 pinentry-curses amd64 1.2.1-1ubuntu1 [34.6 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg amd64 2.2.40-1ubuntu1 [523 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpgconf amd64 2.2.40-1ubuntu1 [93.8 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gpg-agent amd64 2.2.40-1ubuntu1 [217 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 linux-libc-dev amd64 5.19.0-23.24 [1345 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.9 MB in 0s (153 MB/s) (Reading database ... 13556 files and directories currently installed.) 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Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24873939 amd64 lunar-proposed -c chroot:build-PACKAGEBUILD-24873939 --arch=amd64 --dist=lunar-proposed --nolog -A pizzly_0.37.3+ds-8.dsc Initiating build PACKAGEBUILD-24873939 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:02:06 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-013.buildd +==============================================================================+ | pizzly 0.37.3+ds-8 (amd64) Sun, 27 Nov 2022 05:26:18 +0000 | +==============================================================================+ Package: pizzly Version: 0.37.3+ds-8 Source Version: 0.37.3+ds-8 Distribution: lunar-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24873939/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-oneSjX/resolver-xpKbvA' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pizzly_0.37.3+ds-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/pizzly-oneSjX/pizzly-0.37.3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-oneSjX' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [402 B] Get:5 copy:/<>/apt_archive ./ Packages [485 B] Fetched 1844 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base help2man intltool-debian kallisto libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libjsoncpp25 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base help2man intltool-debian kallisto libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libjsoncpp25 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 35.4 MB of archives. After this operation, 131 MB of additional disk space will be used. 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http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gettext-base amd64 0.21-10 [37.6 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main amd64 groff-base amd64 1.22.4-9 [937 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main amd64 libnghttp2-14 amd64 1.50.0-1 [73.7 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main amd64 libpsl5 amd64 0.21.0-1.2build2 [58.4 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main amd64 libuv1 amd64 1.44.2-1 [91.0 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main amd64 man-db amd64 2.11.1-1 [1218 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main amd64 m4 amd64 1.4.19-1 [244 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main amd64 autoconf all 2.71-2 [338 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 autopoint all 0.21-10 [421 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main amd64 libarchive13 amd64 3.6.0-1ubuntu1 [368 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libbrotli1 amd64 1.0.9-2build7 [309 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6ubuntu2 [20.3 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6ubuntu2 [56.6 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-1ubuntu2 [184 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main amd64 libssh-4 amd64 0.10.4-2 [185 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcurl4 amd64 7.86.0-2 [293 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main amd64 libjsoncpp25 amd64 1.9.5-4 [80.3 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main amd64 librhash0 amd64 1.4.2-1ubuntu1 [125 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:35 http://ftpmaster.internal/ubuntu lunar/main amd64 emacsen-common all 3.0.4 [14.9 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 cmake-data all 3.25.0-1ubuntu1 [2053 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 cmake amd64 3.25.0-1ubuntu1 [9272 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libtool all 2.4.7-5 [166 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-autoreconf all 20 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libsub-override-perl all 0.09-4 [8706 B] Get:43 http://ftpmaster.internal/ubuntu lunar/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdw1 amd64 0.188-1 [249 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main amd64 dwz amd64 0.14+20220924-2 [112 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 gettext amd64 0.21-10 [867 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 debhelper all 13.10.1ubuntu1 [924 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/universe amd64 help2man amd64 1.49.2 [197 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libcurl3-gnutls amd64 7.86.0-2 [289 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 libdeflate0 amd64 1.14-1 [64.8 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libhtscodecs2 amd64 1.3.0-4 [93.6 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/universe amd64 libhts3 amd64 1.16+ds-3 [420 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/universe amd64 kallisto amd64 0.48.0+dfsg-3 [271 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/universe amd64 libseqan2-dev all 2.4.0+dfsg-14ubuntu1 [1207 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1ubuntu2 [895 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.4 MB in 0s (141 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15544 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4build4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4build4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../01-libelf1_0.188-1_amd64.deb ... Unpacking libelf1:amd64 (0.188-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../03-libicu71_71.1-3ubuntu1_amd64.deb ... Unpacking libicu71:amd64 (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../04-libxml2_2.9.14+dfsg-1.1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../05-bsdextrautils_2.38-4ubuntu1_amd64.deb ... 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Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu71:amd64 (71.1-3ubuntu1) ... Setting up libpsl5:amd64 (0.21.0-1.2build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build7) ... Setting up libnghttp2-14:amd64 (1.50.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libseqan2-dev (2.4.0+dfsg-14ubuntu1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6ubuntu2) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up emacsen-common (3.0.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up autopoint (0.21-10) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:amd64 (0.10.4-2) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1ubuntu2) ... Setting up librhash0:amd64 (1.4.2-1ubuntu1) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.25.0-1ubuntu1) ... Setting up libelf1:amd64 (0.188-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1) ... Setting up liblocale-gettext-perl (1.07-4build4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:amd64 (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.0-1ubuntu1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.2) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (7.86.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:amd64 (7.86.0-2) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up cmake (3.25.0-1ubuntu1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up kallisto (0.48.0+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-132-generic #148-Ubuntu SMP Mon Oct 17 16:02:06 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-x86-64-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.25.0-1ubuntu1 cmake-data_3.25.0-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 emacsen-common_3.0.4 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 help2man_1.49.2 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 kallisto_0.48.0+dfsg-3 libacl1_2.3.1-1 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1ubuntu1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39-8ubuntu2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-9ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcurl3-gnutls_7.86.0-2 libcurl4_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 libdw1_0.188-1 libelf1_0.188-1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-9ubuntu1 libgcc-s1_12.2.0-9ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1ubuntu2 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-9ubuntu1 libgpg-error0_1.46-1 libgprofng0_2.39-8ubuntu2 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-9ubuntu1 libjson-c5_0.16-2 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-1ubuntu2 liblocale-gettext-perl_1.07-4build4 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-9ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.2.8-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-4ubuntu2 libpipeline1_1.5.7-1 libpng16-16_1.6.39-1 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.0-1.2build2 libquadmath0_12.2.0-9ubuntu1 libreadline8_8.2-1.2 librhash0_1.4.2-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu2 libsasl2-modules-db_2.1.28+dfsg-6ubuntu2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libseqan2-dev_2.4.0+dfsg-14ubuntu1 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1ubuntu1 libssh-4_0.10.4-2 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_251.4-1ubuntu7 libsystemd0_251.4-1ubuntu7 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-9ubuntu1 libubsan1_12.2.0-9ubuntu1 libuchardet0_0.0.7-1build2 libudev1_251.4-1ubuntu7 libunistring2_1.0-2 libuuid1_2.38-4ubuntu1 libuv1_1.44.2-1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.2ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pizzly Binary: pizzly Architecture: any Version: 0.37.3+ds-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz 1bc0a6af090ac436aae720f3296b8440f73053f0 5296 pizzly_0.37.3+ds-8.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 6ff5bef4b5b395b760f26a259f54c5540e76b7d088c8ec0947a09179104a3793 5296 pizzly_0.37.3+ds-8.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz 5db632862926d539e7c06484d9ea5b76 5296 pizzly_0.37.3+ds-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOCgX8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFFdg//Ssnhc/xCVCHTHUEX5TT99lHa9Lb2/USM +K7W2mMe9ZAi/4+5qynXZbXqU+wt8Xa5UmT7dHGHHeeGR+JU8AblzdMHnKt3cTIS YQ4C7yTykX3UVTfHqKVRdBdXeTVVtBUjmfCILh45129T1QJb5Z5zAEt+q0SBdAFS 1ICzIUuVHt9xHKNdd0AgvXy6bzGapjRg7Zy3KQ2qYsGZsA3pIZgeiazGRprUKBGX ivsWA5fT6VySG9A3UewnKEts/h700ig/5l6OPFMNXWA+K0XPql6LpbJML8QE2TFN LuZ31r2zxAQg52SRLd/nApU4Uu6Iwk6GWx9J62d4UVfpTBFa2v0m/+rGbA/6l3EZ XPAeqv7TbuD2LIhWuot2NOXaYFbEpg7aRCP39wx5Fy7gPccQxrVrtWF9FH5Tf6ww jPyjB3T947Ql4DSbZKwOdaonAtDIFJYe5kDITLwFskSQxiTz9VsE2fhaAAJO/4Ez RaRE6d7J5LaB5ACk+DgBTZJsg/HVIcqsoqgm4+LfuQsKWr9+tn0pbLkMx0/FUzM2 jBtryc5EbNT5HQ50DMEaIRI0+j+/PNhIyL1hFwWuVWn6AumqVzbNEBlpkViqNICk f44ALW4+UZZzVpDdwDFxgvhhsWmIBLm3lQGkSEzSEtjWMb8xP9asP0IwQsZq0mib uRoO5xkomoQ= =3lnH -----END PGP SIGNATURE----- gpgv: Signature made Sat Nov 26 21:13:35 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./pizzly_0.37.3+ds-8.dsc dpkg-source: info: extracting pizzly in /<> dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24873939 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24873939 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24873939 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home rm -f debian/pizzly.1 make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure install -d /<>/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home install -d obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.13") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/<>/. -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /<>/main.cpp In file included from /<>/main.cpp:6: /<>/common.h: In constructor ‘ProgramOptions::ProgramOptions()’: /<>/common.h:18:7: warning: ‘ProgramOptions::kmerScore’ will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /<>/common.h:17:7: warning: ‘int ProgramOptions::insertSize’ [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /<>/common.h:17:7: warning: ‘ProgramOptions::insertSize’ will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:14:8: warning: ‘bool ProgramOptions::ignoreProtein’ [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /<>/main.cpp:8: /<>/GeneModel.hpp: In member function ‘bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)’: /<>/GeneModel.hpp:117:10: warning: unused variable ‘fw’ [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /<>/GeneModel.hpp: In function ‘void writeTranscriptome(Transcriptome&, std::ostream&)’: /<>/GeneModel.hpp:146:17: warning: unused variable ‘gene_id’ [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /<>/GeneModel.hpp:172:19: warning: unused variable ‘tr_id’ [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /<>/GeneModel.hpp: In function ‘void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)’: /<>/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/main.cpp:9: /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:205:27: note: remove ‘std::move’ call /<>/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:214:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:251:9: warning: unused variable ‘matchlen’ [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /<>/FilterFusions.hpp:323:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:765:11: warning: unused variable ‘gap’ [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /<>/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /<>/FilterFusions.hpp:781:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:867:17: warning: unused variable ‘split_reads’ [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /<>/FilterFusions.hpp:1033:29: warning: loop variable ‘p’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /<>/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /<>/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:1112:18: warning: unused variable ‘firstJsonRead’ [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /<>/main.cpp: In function ‘int main(int, const char**)’: /<>/main.cpp:126:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, seqan::String > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp: In function ‘Strandedness operator~(const Strandedness&)’: /<>/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /<>/main.cpp:2: In function ‘seqan::lexicalCast, std::allocator > >(std::__cxx11::basic_string, std::allocator > const&)int’, inlined from ‘seqan::_getNumbersFromString(std::__cxx11::basic_string, std::allocator > const&)’ at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘seqan::_getNumbersFromString(std::__cxx11::basic_string, std::allocator > const&)’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int &’ to ‘seqan::BadLexicalCast::BadLexicalCast, std::allocator > >(int const&, std::__cxx11::basic_string, std::allocator > const&)’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘seqan::lexicalCast > >(seqan::String > const&)unsigned int’, inlined from ‘seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void’ at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘seqan::lexicalCast > >(seqan::String > const&)unsigned int’, inlined from ‘seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void’ at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘seqan::readRecord, std::char_traits >, seqan::StreamIterator > > >(seqan::GffRecord&, seqan::String >&, seqan::Iter, std::char_traits >, seqan::StreamIterator > >&)void’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int &’ to ‘seqan::BadLexicalCast::BadLexicalCast > >(unsigned int const&, seqan::String > const&)’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ /<>/FilterFusions.hpp: In member function ‘filterFusionRecord(Transcriptome const&, ProgramOptions&, FusionRecord const&, SplitRecord&)::{lambda(std::__cxx11::basic_string, std::allocator > const&, std::vector > const&, std::vector > const&, std::vector, std::allocator > >&, int&)#7}::operator()(std::__cxx11::basic_string, std::allocator > const&, std::vector > const&, std::vector > const&, std::vector, std::allocator > >&, int&) const [clone .constprop.0]’: /<>/FilterFusions.hpp:435:15: warning: ‘splitStrand’ may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /<>/FilterFusions.hpp:389:22: note: ‘splitStrand’ was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /<>/FilterFusions.hpp: In function ‘filterFusionRecord(Transcriptome const&, ProgramOptions&, FusionRecord const&, SplitRecord&)’: /<>/FilterFusions.hpp:603:25: warning: ‘st2’ may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:22: note: ‘st2’ was declared here 554 | Strandedness st1,st2; | ^~~ /<>/FilterFusions.hpp:602:25: warning: ‘st1’ may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:18: note: ‘st1’ was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-QLXHzPbg create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -d /<>/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/<>' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-x86_64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ install -d debian/.debhelper/generated/pizzly make[1]: Leaving directory '/<>' dh_installdocs install -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/<>' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a debugedit --build-id --build-id-seed=pizzly/0.37.3\+ds-8 debian/pizzly/usr/bin/pizzly 930ecab1999fc705e4e2f5178bc3d1834009afd0 install -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/93 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/93/0ecab1999fc705e4e2f5178bc3d1834009afd0.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/93/0ecab1999fc705e4e2f5178bc3d1834009afd0.debug strip --remove-section=.comment --remove-section=.note -o /tmp/UBhuGjAXwP/stripI6uJlf debian/pizzly/usr/bin/pizzly chmod --reference debian/pizzly/usr/bin/pizzly /tmp/UBhuGjAXwP/stripI6uJlf cat '/tmp/UBhuGjAXwP/stripI6uJlf' > 'debian/pizzly/usr/bin/pizzly' chmod --reference /tmp/UBhuGjAXwP/stripI6uJlf debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/93/0ecab1999fc705e4e2f5178bc3d1834009afd0.debug debian/pizzly/usr/bin/pizzly /tmp/UBhuGjAXwP/objcopysXYJiw chmod --reference debian/pizzly/usr/bin/pizzly /tmp/UBhuGjAXwP/objcopysXYJiw cat '/tmp/UBhuGjAXwP/objcopysXYJiw' > 'debian/pizzly/usr/bin/pizzly' chmod --reference /tmp/UBhuGjAXwP/objcopysXYJiw debian/pizzly/usr/bin/pizzly install -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dh_installdeb dh_gencontrol echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=930ecab1999fc705e4e2f5178bc3d1834009afd0 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. install -d debian/.debhelper/scratch-space/build-pizzly dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root debian/.debhelper/scratch-space/build-pizzly INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing pizzly (in debian/pizzly); do_strip: , oemstrip: pkgstriptranslations: processing pizzly-dbgsym (in debian/.debhelper/pizzly/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/pizzly/DEBIAN/control, package pizzly, directory debian/pizzly pkgstripfiles: Running PNG optimization (using 4 cpus) for package pizzly ... pkgstripfiles: No PNG files. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-8_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control, package pizzly-dbgsym, directory debian/.debhelper/pizzly/dbgsym-root dpkg-deb: building package 'pizzly-dbgsym' in 'debian/.debhelper/scratch-space/build-pizzly/pizzly-dbgsym_0.37.3+ds-8_amd64.deb'. Renaming pizzly-dbgsym_0.37.3+ds-8_amd64.deb to pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb mv debian/.debhelper/scratch-space/build-pizzly/pizzly-dbgsym_0.37.3\+ds-8_amd64.deb ../pizzly-dbgsym_0.37.3\+ds-8_amd64.ddeb dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-8_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../pizzly_0.37.3+ds-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-27T05:27:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pizzly_0.37.3+ds-8_amd64.changes: --------------------------------- Format: 1.8 Date: Sat, 26 Nov 2022 22:09:45 +0100 Source: pizzly Binary: pizzly Built-For-Profiles: noudeb Architecture: amd64 Version: 0.37.3+ds-8 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-8) unstable; urgency=medium . * Team upload. * Fix watch file Checksums-Sha1: bd608d68be19495e4fe7dc8c74e5b3167eb86d09 3260250 pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb ea968eaaf2d4365a4215919d22d8c17322c1dfc4 6836 pizzly_0.37.3+ds-8_amd64.buildinfo 25e622a6ad2d281483b5e3e9a804d888f10918f4 290246 pizzly_0.37.3+ds-8_amd64.deb Checksums-Sha256: f511af2c37495a4a1a62f9324494f433313699270e988ab71113d5c7b2862149 3260250 pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb a27cccc5e2c3f0b2ba61d7487741729ffdc0b927a456b16bf0d30a51b89ca5d6 6836 pizzly_0.37.3+ds-8_amd64.buildinfo ba88d9c4595c65fab0bd69de6f23e17fc4d3ef9e87970e7cb7cf0e11cd7678ef 290246 pizzly_0.37.3+ds-8_amd64.deb Files: 282ee1195a3d6d4e70a2ff1ada97c8ce 3260250 debug optional pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb 6c7b60b2ee9750e73ac9a6ef41d539a0 6836 science optional pizzly_0.37.3+ds-8_amd64.buildinfo 4691826ea254de1c2e619d11496a36d5 290246 science optional pizzly_0.37.3+ds-8_amd64.deb /<>/pizzly_0.37.3+ds-8_amd64.changes.new could not be renamed to /<>/pizzly_0.37.3+ds-8_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: amd64 Version: 0.37.3+ds-8 Checksums-Md5: 282ee1195a3d6d4e70a2ff1ada97c8ce 3260250 pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb 4691826ea254de1c2e619d11496a36d5 290246 pizzly_0.37.3+ds-8_amd64.deb Checksums-Sha1: bd608d68be19495e4fe7dc8c74e5b3167eb86d09 3260250 pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb 25e622a6ad2d281483b5e3e9a804d888f10918f4 290246 pizzly_0.37.3+ds-8_amd64.deb Checksums-Sha256: f511af2c37495a4a1a62f9324494f433313699270e988ab71113d5c7b2862149 3260250 pizzly-dbgsym_0.37.3+ds-8_amd64.ddeb ba88d9c4595c65fab0bd69de6f23e17fc4d3ef9e87970e7cb7cf0e11cd7678ef 290246 pizzly_0.37.3+ds-8_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Sun, 27 Nov 2022 05:27:17 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-x86-64-linux-gnu (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.25.0-1ubuntu1), cmake-data (= 3.25.0-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14+20220924-2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), help2man (= 1.49.2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), kallisto (= 0.48.0+dfsg-3), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcurl3-gnutls (= 7.86.0-2), libcurl4 (= 7.86.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.188-1), libelf1 (= 0.188-1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.39-8ubuntu2), libgssapi-krb5-2 (= 1.20.1-1), libhogweed6 (= 3.8.1-2), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-9ubuntu1), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu2), liblocale-gettext-perl (= 1.07-4build4), liblsan0 (= 12.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.8-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.7-1), libprocps8 (= 2:3.3.17-7ubuntu1), libpsl5 (= 0.21.0-1.2build2), libquadmath0 (= 12.2.0-9ubuntu1), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libseqan2-dev (= 2.4.0+dfsg-14ubuntu1), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.19.0-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan2 (= 12.2.0-9ubuntu1), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.8-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu2), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1669496985" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pizzly_0.37.3+ds-8_amd64.deb ---------------------------- new Debian package, version 2.0. size 290246 bytes: control archive=1052 bytes. 988 bytes, 21 lines control 580 bytes, 9 lines md5sums Package: pizzly Version: 0.37.3+ds-8 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 732 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 12.2.0-9ubuntu1), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Section: science Priority: optional Homepage: https://github.com/pmelsted/pizzly Description: Identifies gene fusions in RNA sequencing data For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations. . Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow. drwxr-xr-x root/root 0 2022-11-26 21:09 ./ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/bin/ -rwxr-xr-x root/root 1492 2022-11-26 21:09 ./usr/bin/flatten_json.py -rwxr-xr-x root/root 908 2022-11-26 21:09 ./usr/bin/get_fragment_length.py -rwxr-xr-x root/root 720464 2022-11-26 21:09 ./usr/bin/pizzly lrwxrwxrwx root/root 0 2022-11-26 21:09 ./usr/bin/pizzly_flatten_json.py -> flatten_json.py drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/doc/pizzly/ -rw-r--r-- root/root 595 2022-11-26 21:09 ./usr/share/doc/pizzly/README.Debian -rw-r--r-- root/root 4027 2017-07-20 21:30 ./usr/share/doc/pizzly/README.md -rw-r--r-- root/root 1062 2022-11-26 21:09 ./usr/share/doc/pizzly/changelog.Debian.gz -rw-r--r-- root/root 3131 2022-11-26 21:09 ./usr/share/doc/pizzly/copyright drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 115 2022-11-26 21:09 ./usr/share/lintian/overrides/pizzly drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/man/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/man/man1/ -rw-r--r-- root/root 700 2022-11-26 21:09 ./usr/share/man/man1/pizzly.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 63492 Build-Time: 53 Distribution: lunar-proposed Host Architecture: amd64 Install-Time: 4 Job: pizzly_0.37.3+ds-8.dsc Machine Architecture: amd64 Package: pizzly Package-Time: 59 Source-Version: 0.37.3+ds-8 Space: 63492 Status: successful Version: 0.37.3+ds-8 -------------------------------------------------------------------------------- Finished at 2022-11-27T05:27:17Z Build needed 00:00:59, 63492k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=amd64 PACKAGEBUILD-24873939 Scanning for processes to kill in build PACKAGEBUILD-24873939