https://launchpad.net/ubuntu/+source/pizzly/0.37.3+ds-8/+build/24873943 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-075 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_222~591~ubuntu20.04.1 python3-lpbuildd_222~591~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 27 Nov 05:26:09 ntpdate[2988556]: adjust time server 10.211.37.1 offset -0.000745 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 --image-type chroot /home/buildd/filecache-default/bd2efcf6731aa872623249a0b7bfd1b3d3fdc231 Creating target for build PACKAGEBUILD-24873943 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 Starting target for build PACKAGEBUILD-24873943 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24873943 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 Updating target for build PACKAGEBUILD-24873943 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [251 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 Packages [1299 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe riscv64 Packages [13.4 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5840 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 Packages [301 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [123 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 Packages [1578 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [696 kB] Fetched 24.3 MB in 36s (684 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.36 perl-modules-5.36 The following packages will be upgraded: advancecomp apt binutils binutils-common binutils-riscv64-linux-gnu debianutils e2fsprogs fakeroot gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapparmor1 libapt-pkg6.0 libassuan0 libaudit-common libaudit1 libbinutils libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libext2fs2 libfakeroot libffi8 libgpg-error0 libgssapi-krb5-2 libip4tc2 libjson-c5 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libreadline8 libseccomp2 libselinux1 libsqlite3-0 libss2 libssl3 linux-libc-dev login logsave openssl passwd perl perl-base pinentry-curses readline-common tar usrmerge xz-utils zlib1g 64 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 23.6 MB of archives. After this operation, 44.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 debianutils riscv64 5.7-0.4 [102 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 grep riscv64 3.8-3 [154 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 login riscv64 1:4.13+dfsg1-1ubuntu1 [195 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libperl5.36 riscv64 5.36.0-4ubuntu2 [4200 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl riscv64 5.36.0-4ubuntu2 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-base riscv64 5.36.0-4ubuntu2 [1649 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.33-1 [235 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcrypt1 riscv64 1:4.4.33-1 [93.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu2 [53.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 tar riscv64 1.34+dfsg-1.1 [271 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main riscv64 usrmerge all 33ubuntu1 [57.0 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 init-system-helpers all 1.65.2 [38.1 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblz4-1 riscv64 1.9.4-1 [74.7 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblzma5 riscv64 5.2.8-0.0 [95.8 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libapt-pkg6.0 riscv64 2.5.4 [918 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgpg-error0 riscv64 1.46-1 [62.1 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpgv riscv64 2.2.40-1ubuntu1 [202 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 apt riscv64 2.5.4 [1338 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcap-ng0 riscv64 0.8.3-1build1 [13.5 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libaudit1 riscv64 1:3.0.7-1ubuntu2 [44.0 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpam0g riscv64 1.5.2-5ubuntu1 [56.1 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libselinux1 riscv64 3.4-1build1 [71.3 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpam-modules-bin riscv64 1.5.2-5ubuntu1 [43.1 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpam-modules riscv64 1.5.2-5ubuntu1 [265 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 logsave riscv64 1.46.6~rc1-1ubuntu1 [9998 B] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libext2fs2 riscv64 1.46.6~rc1-1ubuntu1 [192 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 e2fsprogs riscv64 1.46.6~rc1-1ubuntu1 [547 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 init riscv64 1.65.2 [4812 B] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpam-runtime all 1.5.2-5ubuntu1 [40.0 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 passwd riscv64 1:4.13+dfsg1-1ubuntu1 [807 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libffi8 riscv64 3.4.4-1 [21.2 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcom-err2 riscv64 1.46.6~rc1-1ubuntu1 [8672 B] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libss2 riscv64 1.46.6~rc1-1ubuntu1 [10.6 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libapparmor1 riscv64 3.0.7-1ubuntu4 [33.4 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjson-c5 riscv64 0.16-2 [28.6 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libssl3 riscv64 3.0.5-2ubuntu2 [1437 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcryptsetup12 riscv64 2:2.5.0-6ubuntu1 [190 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-1 [125 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libkrb5-3 riscv64 1.20.1-1 [329 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libkrb5support0 riscv64 1.20.1-1 [30.0 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libk5crypto3 riscv64 1.20.1-1 [96.5 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu7 [17.9 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 readline-common all 8.2-1.2 [55.2 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libreadline8 riscv64 8.2-1.2 [130 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libseccomp2 riscv64 2.5.4-1ubuntu2 [44.2 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsqlite3-0 riscv64 3.40.0-1 [583 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 openssl riscv64 3.0.5-2ubuntu2 [1140 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libpng16-16 riscv64 1.6.39-1 [174 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 xz-utils riscv64 5.2.8-0.0 [139 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main riscv64 advancecomp riscv64 2.4-1 [9196 B] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf-nobfd0 riscv64 2.39-8ubuntu2 [88.4 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf0 riscv64 2.39-8ubuntu2 [87.0 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.39-8ubuntu2 [814 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libbinutils riscv64 2.39-8ubuntu2 [409 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils riscv64 2.39-8ubuntu2 [3022 B] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-common riscv64 2.39-8ubuntu2 [216 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libfakeroot riscv64 1.30.1-1ubuntu1 [26.4 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 fakeroot riscv64 1.30.1-1ubuntu1 [67.9 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libassuan0 riscv64 2.5.5-5 [31.7 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 pinentry-curses riscv64 1.2.1-1ubuntu1 [36.0 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpg riscv64 2.2.40-1ubuntu1 [491 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpgconf riscv64 2.2.40-1ubuntu1 [119 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gpg-agent riscv64 2.2.40-1ubuntu1 [239 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 linux-libc-dev riscv64 5.19.0-23.24 [1314 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.6 MB in 4s (5572 kB/s) (Reading database ... 13478 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.4_riscv64.deb ... Unpacking debianutils (5.7-0.4) over (5.7-0.3) ... Setting up debianutils (5.7-0.4) ... (Reading database ... 13478 files and directories currently installed.) Preparing to unpack .../grep_3.8-3_riscv64.deb ... Unpacking grep (3.8-3) over (3.7-1build1) ... Setting up grep (3.8-3) ... (Reading database ... 13478 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-1ubuntu1_riscv64.deb ... Unpacking login (1:4.13+dfsg1-1ubuntu1) over (1:4.11.1+dfsg1-2ubuntu1) ... Setting up login (1:4.13+dfsg1-1ubuntu1) ... (Reading database ... 13486 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-4ubuntu2_riscv64.deb ... Unpacking perl (5.36.0-4ubuntu2) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../perl-modules-5.36_5.36.0-4ubuntu2_all.deb ... Unpacking perl-modules-5.36 (5.36.0-4ubuntu2) ... 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Setting up gpg (2.2.40-1ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24873943 riscv64 lunar-proposed -c chroot:build-PACKAGEBUILD-24873943 --arch=riscv64 --dist=lunar-proposed --nolog pizzly_0.37.3+ds-8.dsc Initiating build PACKAGEBUILD-24873943 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-075.buildd +==============================================================================+ | pizzly 0.37.3+ds-8 (riscv64) Sun, 27 Nov 2022 05:33:11 +0000 | +==============================================================================+ Package: pizzly Version: 0.37.3+ds-8 Source Version: 0.37.3+ds-8 Distribution: lunar-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24873943/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-HbeFfK/resolver-knwN4x' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- pizzly_0.37.3+ds-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/pizzly-HbeFfK/pizzly-0.37.3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/pizzly-HbeFfK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [402 B] Get:5 copy:/<>/apt_archive ./ Packages [484 B] Fetched 1843 B in 1s (3619 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base help2man intltool-debian kallisto libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libjsoncpp25 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base groff-base help2man intltool-debian kallisto libarchive-zip-perl libarchive13 libbrotli1 libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts3 libhtscodecs2 libicu71 libjsoncpp25 libldap-2.5-0 liblocale-gettext-perl libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 31.4 MB of archives. After this operation, 119 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblocale-gettext-perl riscv64 1.07-4build4 [14.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libelf1 riscv64 0.188-1 [47.0 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libexpat1 riscv64 2.5.0-1 [77.1 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 libicu71 riscv64 71.1-3ubuntu1 [10.5 MB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.1 [598 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main riscv64 bsdextrautils riscv64 2.38-4ubuntu1 [81.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic-mgc riscv64 1:5.41-4 [257 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic1 riscv64 1:5.41-4 [88.7 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main riscv64 file riscv64 1:5.41-4 [20.6 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gettext-base riscv64 0.21-10 [38.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main riscv64 groff-base riscv64 1.22.4-9 [906 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main riscv64 libnghttp2-14 riscv64 1.50.0-1 [71.0 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpsl5 riscv64 0.21.0-1.2build2 [57.3 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main riscv64 libuv1 riscv64 1.44.2-1 [77.1 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main riscv64 man-db riscv64 2.11.1-1 [1178 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main riscv64 m4 riscv64 1.4.19-1 [243 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main riscv64 autoconf all 2.71-2 [338 kB] Get:21 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http://ftpmaster.internal/ubuntu lunar/main riscv64 libssh-4 riscv64 0.10.4-2 [162 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcurl4 riscv64 7.86.0-2 [257 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main riscv64 libjsoncpp25 riscv64 1.9.5-4 [78.8 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main riscv64 librhash0 riscv64 1.4.2-1ubuntu1 [143 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-elpa-helper all 2.0.9ubuntu1 [7610 B] Get:35 http://ftpmaster.internal/ubuntu lunar/main riscv64 emacsen-common all 3.0.4 [14.9 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cmake-data all 3.25.0-1ubuntu1 [2053 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cmake riscv64 3.25.0-1ubuntu1 [5867 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libtool all 2.4.7-5 [166 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsub-override-perl all 0.09-4 [8706 B] Get:43 http://ftpmaster.internal/ubuntu lunar/main riscv64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdw1 riscv64 0.188-1 [227 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main riscv64 debugedit riscv64 1:5.0-5 [48.8 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main riscv64 dwz riscv64 0.14+20220924-2 [115 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gettext riscv64 0.21-10 [811 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 debhelper all 13.10.1ubuntu1 [924 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/universe riscv64 help2man riscv64 1.49.2 [196 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcurl3-gnutls riscv64 7.86.0-2 [251 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdeflate0 riscv64 1.14-1 [52.8 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 libhtscodecs2 riscv64 1.3.0-4 [77.6 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 libhts3 riscv64 1.16+ds-3 [382 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/universe riscv64 kallisto riscv64 0.48.0+dfsg-3 [287 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libseqan2-dev all 2.4.0+dfsg-14ubuntu1 [1207 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 zlib1g-dev riscv64 1:1.2.13.dfsg-1ubuntu2 [957 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.4 MB in 7s (4406 kB/s) Selecting previously unselected package liblocale-gettext-perl. 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Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up dh-elpa-helper (2.0.9ubuntu1) ... Setting up autopoint (0.21-10) ... Setting up libjsoncpp25:riscv64 (1.9.5-4) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:riscv64 (0.10.4-2) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:riscv64 (1:1.2.13.dfsg-1ubuntu2) ... Setting up librhash0:riscv64 (1.4.2-1ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up cmake-data (3.25.0-1ubuntu1) ... Setting up libelf1:riscv64 (0.188-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.1) ... Setting up liblocale-gettext-perl (1.07-4build4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:riscv64 (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:riscv64 (3.6.0-1ubuntu1) ... Setting up libldap-2.5-0:riscv64 (2.5.13+dfsg-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.2) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:riscv64 (7.86.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:riscv64 (7.86.0-2) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up cmake (3.25.0-1ubuntu1) ... Setting up libhts3:riscv64 (1.16+ds-3) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up kallisto (0.48.0+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.121ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39-8ubuntu2 binutils-common_2.39-8ubuntu2 binutils-riscv64-linux-gnu_2.39-8ubuntu2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 cmake_3.25.0-1ubuntu1 cmake-data_3.25.0-1ubuntu1 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-9ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-elpa-helper_2.0.9ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 emacsen-common_3.0.4 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-9ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-9ubuntu1 gcc-12-base_12.2.0-9ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 help2man_1.49.2 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 kallisto_0.48.0+dfsg-3 libacl1_2.3.1-1 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1ubuntu1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-9ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-9ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39-8ubuntu2 libblkid1_2.38-4ubuntu1 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-9ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu1 libctf-nobfd0_2.39-8ubuntu2 libctf0_2.39-8ubuntu2 libcurl3-gnutls_7.86.0-2 libcurl4_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdeflate0_1.14-1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.9ubuntu1 libdw1_0.188-1 libelf1_0.188-1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-9ubuntu1 libgcc-s1_12.2.0-9ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1ubuntu2 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-9ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libjson-c5_0.16-2 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-1ubuntu2 liblocale-gettext-perl_1.07-4build4 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.2.8-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-4ubuntu2 libpipeline1_1.5.7-1 libpng16-16_1.6.39-1 libprocps8_2:3.3.17-7ubuntu1 libpsl5_0.21.0-1.2build2 libreadline8_8.2-1.2 librhash0_1.4.2-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg-6ubuntu2 libsasl2-modules-db_2.1.28+dfsg-6ubuntu2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libseqan2-dev_2.4.0+dfsg-14ubuntu1 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1ubuntu1 libssh-4_0.10.4-2 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_251.4-1ubuntu7 libsystemd0_251.4-1ubuntu7 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libuchardet0_0.0.7-1build2 libudev1_251.4-1ubuntu7 libunistring2_1.0-2 libuuid1_2.38-4ubuntu1 libuv1_1.44.2-1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lsb-base_11.2ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 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Architecture: any Version: 0.37.3+ds-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev, help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz 1bc0a6af090ac436aae720f3296b8440f73053f0 5296 pizzly_0.37.3+ds-8.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 6ff5bef4b5b395b760f26a259f54c5540e76b7d088c8ec0947a09179104a3793 5296 pizzly_0.37.3+ds-8.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz 5db632862926d539e7c06484d9ea5b76 5296 pizzly_0.37.3+ds-8.debian.tar.xz -----BEGIN 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check signature: No public key dpkg-source: warning: cannot verify signature ./pizzly_0.37.3+ds-8.dsc dpkg-source: info: extracting pizzly in /<> dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24873943 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24873943 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24873943 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home rm -f debian/pizzly.1 make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /<>/pizzly-0.37.3\+ds/debian/.debhelper/generated/_source/home install -d obj-riscv64-linux-gnu cd obj-riscv64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu .. -- The CXX compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/riscv64-linux-gnu/libz.so (found version "1.2.13") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-riscv64-linux-gnu dh_auto_build -a cd obj-riscv64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/<>/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /<>/main.cpp In file included from /<>/main.cpp:6: /<>/common.h: In constructor ‘ProgramOptions::ProgramOptions()’: /<>/common.h:18:7: warning: ‘ProgramOptions::kmerScore’ will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /<>/common.h:17:7: warning: ‘int ProgramOptions::insertSize’ [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /<>/common.h:17:7: warning: ‘ProgramOptions::insertSize’ will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /<>/common.h:14:8: warning: ‘bool ProgramOptions::ignoreProtein’ [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /<>/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /<>/main.cpp:8: /<>/GeneModel.hpp: In member function ‘bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)’: /<>/GeneModel.hpp:117:10: warning: unused variable ‘fw’ [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /<>/GeneModel.hpp: In function ‘void writeTranscriptome(Transcriptome&, std::ostream&)’: /<>/GeneModel.hpp:146:17: warning: unused variable ‘gene_id’ [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /<>/GeneModel.hpp:172:19: warning: unused variable ‘tr_id’ [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /<>/GeneModel.hpp: In function ‘void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)’: /<>/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/main.cpp:9: /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:205:27: note: remove ‘std::move’ call /<>/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /<>/FilterFusions.hpp:214:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:251:9: warning: unused variable ‘matchlen’ [-Wunused-variable] 251 | int matchlen = seqan::length(krseq); | ^~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | if (tr_stop > seqan::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /<>/FilterFusions.hpp:323:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:765:11: warning: unused variable ‘gap’ [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /<>/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /<>/FilterFusions.hpp:781:21: note: remove ‘std::move’ call /<>/FilterFusions.hpp: In lambda function: /<>/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:867:17: warning: unused variable ‘split_reads’ [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /<>/FilterFusions.hpp:1033:29: warning: loop variable ‘p’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /<>/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /<>/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /<>/FilterFusions.hpp:1112:18: warning: unused variable ‘firstJsonRead’ [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /<>/main.cpp: In function ‘int main(int, const char**)’: /<>/main.cpp:126:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::unordered_map, seqan::String > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/GeneModel.hpp: In function ‘Strandedness operator~(const Strandedness&)’: /<>/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ In file included from /usr/include/seqan/stream.h:119, from /usr/include/seqan/arg_parse.h:46, from /<>/main.cpp:2: In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]’, inlined from ‘seqan::String seqan::_getNumbersFromString(const std::string&)’ at /usr/include/seqan/arg_parse/arg_parse_version_check.h:356:46: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘seqan::String seqan::_getNumbersFromString(const std::string&)’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = int; TSource = std::__cxx11::basic_string]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]’, inlined from ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’ at /usr/include/seqan/gff_io/gff_io_base.h:379:44: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ In function ‘TTarget seqan::lexicalCast(const TSource&) [with TTarget = unsigned int; TSource = String >]’, inlined from ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’ at /usr/include/seqan/gff_io/gff_io_base.h:386:42: /usr/include/seqan/stream/lexical_cast.h:255:9: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 255 | throw BadLexicalCast(target, source); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h: In function ‘void seqan::readRecord(GffRecord&, CharString&, TFwdIterator&) [with TFwdIterator = Iter >, StreamIterator > >]’: /usr/include/seqan/stream/lexical_cast.h:72:5: note: by argument 2 of type ‘const unsigned int&’ to ‘seqan::BadLexicalCast::BadLexicalCast(const TTarget&, const TSource&) [with TTarget = unsigned int; TSource = seqan::String >]’ declared here 72 | BadLexicalCast(TTarget const & target, TSource const & source) : | ^~~~~~~~~~~~~~ /usr/include/seqan/stream/lexical_cast.h:253:13: note: ‘target’ declared here 253 | TTarget target; | ^~~~~~ /<>/FilterFusions.hpp: In member function ‘auto filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)::&, const std::vector&, std::vector >&, int&)>::operator().constprop(const std::string&, const std::vector&, const std::vector&, std::vector >&, int&) const’: /<>/FilterFusions.hpp:435:15: warning: ‘splitStrand’ may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /<>/FilterFusions.hpp:389:22: note: ‘splitStrand’ was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /<>/FilterFusions.hpp: In function ‘bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)’: /<>/FilterFusions.hpp:603:25: warning: ‘st2’ may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:22: note: ‘st2’ was declared here 554 | Strandedness st1,st2; | ^~~ /<>/FilterFusions.hpp:602:25: warning: ‘st1’ may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/FilterFusions.hpp:554:18: note: ‘st1’ was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -DSEQAN_HAS_ZLIB=1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz -latomic make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ -a install -d /<>/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/<>' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-riscv64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ install -d debian/.debhelper/generated/pizzly make[1]: Leaving directory '/<>' dh_installdocs -a install -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs -a install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman -a install -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian -a install -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl -a dh_link -a rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism -a dh_compress -a cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/<>' dh_fixperms -a find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a debugedit --build-id --build-id-seed=pizzly/0.37.3\+ds-8 debian/pizzly/usr/bin/pizzly 1a8219302fc4d7a618c3e67e7ee3282de1d0d0d9 install -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/1a/8219302fc4d7a618c3e67e7ee3282de1d0d0d9.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/1a/8219302fc4d7a618c3e67e7ee3282de1d0d0d9.debug strip --remove-section=.comment --remove-section=.note -o /tmp/RLZTShz94Q/strip6yJfpi debian/pizzly/usr/bin/pizzly chmod --reference debian/pizzly/usr/bin/pizzly /tmp/RLZTShz94Q/strip6yJfpi cat '/tmp/RLZTShz94Q/strip6yJfpi' > 'debian/pizzly/usr/bin/pizzly' chmod --reference /tmp/RLZTShz94Q/strip6yJfpi debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/1a/8219302fc4d7a618c3e67e7ee3282de1d0d0d9.debug debian/pizzly/usr/bin/pizzly /tmp/RLZTShz94Q/objcopySd7kDM chmod --reference debian/pizzly/usr/bin/pizzly /tmp/RLZTShz94Q/objcopySd7kDM cat '/tmp/RLZTShz94Q/objcopySd7kDM' > 'debian/pizzly/usr/bin/pizzly' chmod --reference /tmp/RLZTShz94Q/objcopySd7kDM debian/pizzly/usr/bin/pizzly install -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=1a8219302fc4d7a618c3e67e7ee3282de1d0d0d9 -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums -a cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/pizzly .. install -d debian/.debhelper/scratch-space/build-pizzly dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root debian/.debhelper/scratch-space/build-pizzly INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing pizzly (in debian/pizzly); do_strip: , oemstrip: pkgstriptranslations: processing pizzly-dbgsym (in debian/.debhelper/pizzly/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/pizzly/DEBIAN/control, package pizzly, directory debian/pizzly pkgstripfiles: Running PNG optimization (using 8 cpus) for package pizzly ... pkgstripfiles: processing control file: debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control, package pizzly-dbgsym, directory debian/.debhelper/pizzly/dbgsym-root dpkg-deb: building package 'pizzly-dbgsym' in 'debian/.debhelper/scratch-space/build-pizzly/pizzly-dbgsym_0.37.3+ds-8_riscv64.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-8_riscv64.deb'. Renaming pizzly-dbgsym_0.37.3+ds-8_riscv64.deb to pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb mv debian/.debhelper/scratch-space/build-pizzly/pizzly-dbgsym_0.37.3\+ds-8_riscv64.deb ../pizzly-dbgsym_0.37.3\+ds-8_riscv64.ddeb dpkg-genbuildinfo --build=any -O../pizzly_0.37.3+ds-8_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../pizzly_0.37.3+ds-8_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-11-27T05:48:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ pizzly_0.37.3+ds-8_riscv64.changes: ----------------------------------- Format: 1.8 Date: Sat, 26 Nov 2022 22:09:45 +0100 Source: pizzly Binary: pizzly Built-For-Profiles: noudeb Architecture: riscv64 Version: 0.37.3+ds-8 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-8) unstable; urgency=medium . * Team upload. * Fix watch file Checksums-Sha1: a26506f5b81cded65c526808196a5b6a0d421a78 2809716 pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb 8d8094089ce6af992da925cff9a6c61bec8641b5 6637 pizzly_0.37.3+ds-8_riscv64.buildinfo 15302fcafea429c4684eb9ebba24de634e323912 298290 pizzly_0.37.3+ds-8_riscv64.deb Checksums-Sha256: 8490d2b6b093a68e02b0f42ce92feb78cc95d334fcdc2d407dda620795b9b804 2809716 pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb 8fad11b6372f84a6da96f61927c814eedc27079b38901dd455a8b841be85743a 6637 pizzly_0.37.3+ds-8_riscv64.buildinfo ec7e1ec1658bd17f6f97220b20d4fdb560ec7bdcb1ca5cba372537df10ab59b3 298290 pizzly_0.37.3+ds-8_riscv64.deb Files: 14d4c8660b189ceeebfc72bbcee6f18c 2809716 debug optional pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb f8a78c6e4d37471870e2b58c881db511 6637 science optional pizzly_0.37.3+ds-8_riscv64.buildinfo 3a000ae79521a49a6d3abd2f815081ca 298290 science optional pizzly_0.37.3+ds-8_riscv64.deb /<>/pizzly_0.37.3+ds-8_riscv64.changes.new could not be renamed to /<>/pizzly_0.37.3+ds-8_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: riscv64 Version: 0.37.3+ds-8 Checksums-Md5: 14d4c8660b189ceeebfc72bbcee6f18c 2809716 pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb 3a000ae79521a49a6d3abd2f815081ca 298290 pizzly_0.37.3+ds-8_riscv64.deb Checksums-Sha1: a26506f5b81cded65c526808196a5b6a0d421a78 2809716 pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb 15302fcafea429c4684eb9ebba24de634e323912 298290 pizzly_0.37.3+ds-8_riscv64.deb Checksums-Sha256: 8490d2b6b093a68e02b0f42ce92feb78cc95d334fcdc2d407dda620795b9b804 2809716 pizzly-dbgsym_0.37.3+ds-8_riscv64.ddeb ec7e1ec1658bd17f6f97220b20d4fdb560ec7bdcb1ca5cba372537df10ab59b3 298290 pizzly_0.37.3+ds-8_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 27 Nov 2022 05:48:08 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), binutils-riscv64-linux-gnu (= 2.39-8ubuntu2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.25.0-1ubuntu1), cmake-data (= 3.25.0-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14+20220924-2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), help2man (= 1.49.2), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), kallisto (= 0.48.0+dfsg-3), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan8 (= 12.2.0-9ubuntu1), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcurl3-gnutls (= 7.86.0-2), libcurl4 (= 7.86.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.188-1), libelf1 (= 0.188-1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-1), libhogweed6 (= 3.8.1-2), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu2), liblocale-gettext-perl (= 1.07-4build4), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.8-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.7-1), libprocps8 (= 2:3.3.17-7ubuntu1), libpsl5 (= 0.21.0-1.2build2), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libselinux1 (= 3.4-1build1), libseqan2-dev (= 2.4.0+dfsg-14ubuntu1), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.19.0-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.8-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu2), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1669496985" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ pizzly_0.37.3+ds-8_riscv64.deb ------------------------------ new Debian package, version 2.0. size 298290 bytes: control archive=1051 bytes. 988 bytes, 21 lines control 580 bytes, 9 lines md5sums Package: pizzly Version: 0.37.3+ds-8 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 706 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.4), libstdc++6 (>= 12.2.0-9ubuntu1), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Section: science Priority: optional Homepage: https://github.com/pmelsted/pizzly Description: Identifies gene fusions in RNA sequencing data For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations. . Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow. drwxr-xr-x root/root 0 2022-11-26 21:09 ./ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/bin/ -rwxr-xr-x root/root 1492 2022-11-26 21:09 ./usr/bin/flatten_json.py -rwxr-xr-x root/root 908 2022-11-26 21:09 ./usr/bin/get_fragment_length.py -rwxr-xr-x root/root 693504 2022-11-26 21:09 ./usr/bin/pizzly lrwxrwxrwx root/root 0 2022-11-26 21:09 ./usr/bin/pizzly_flatten_json.py -> flatten_json.py drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/doc/pizzly/ -rw-r--r-- root/root 595 2022-11-26 21:09 ./usr/share/doc/pizzly/README.Debian -rw-r--r-- root/root 4027 2017-07-20 21:30 ./usr/share/doc/pizzly/README.md -rw-r--r-- root/root 1062 2022-11-26 21:09 ./usr/share/doc/pizzly/changelog.Debian.gz -rw-r--r-- root/root 3131 2022-11-26 21:09 ./usr/share/doc/pizzly/copyright drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 115 2022-11-26 21:09 ./usr/share/lintian/overrides/pizzly drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/man/ drwxr-xr-x root/root 0 2022-11-26 21:09 ./usr/share/man/man1/ -rw-r--r-- root/root 700 2022-11-26 21:09 ./usr/share/man/man1/pizzly.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 57988 Build-Time: 691 Distribution: lunar-proposed Host Architecture: riscv64 Install-Time: 186 Job: pizzly_0.37.3+ds-8.dsc Machine Architecture: riscv64 Package: pizzly Package-Time: 904 Source-Version: 0.37.3+ds-8 Space: 57988 Status: successful Version: 0.37.3+ds-8 -------------------------------------------------------------------------------- Finished at 2022-11-27T05:48:15Z Build needed 00:15:04, 57988k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 Scanning for processes to kill in build PACKAGEBUILD-24873943 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 Stopping target for build PACKAGEBUILD-24873943 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24873943 Removing build PACKAGEBUILD-24873943