https://launchpad.net/ubuntu/+source/plast/2.3.2+dfsg-10/+build/24902673 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-arm64-021 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 5 Dec 23:32:01 ntpdate[1829]: adjust time server 10.211.37.1 offset -0.003218 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24902673 --image-type chroot /home/buildd/filecache-default/8c5cd40452e1382c60289b199b451f1850e898be Creating target for build PACKAGEBUILD-24902673 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24902673 Starting target for build PACKAGEBUILD-24902673 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24902673 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24902673 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24902673 Updating target for build PACKAGEBUILD-24902673 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf Packages [1326 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe armhf Packages [14.2 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5852 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf Packages [186 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [77.5 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf Packages [966 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [477 kB] Fetched 24.2 MB in 9s (2747 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libmd0 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser advancecomp apt binutils binutils-arm-linux-gnueabihf binutils-common bsdutils ca-certificates debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libassuan0 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libffi8 libgmp10 libgpg-error0 libgssapi-krb5-2 libip4tc2 libjson-c5 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng16-16 libreadline8 libseccomp2 libselinux1 libsmartcols1 libsqlite3-0 libss2 libssl3 libuuid1 linux-libc-dev login logsave mount openssl passwd perl perl-base pinentry-curses readline-common sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 84 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 31.2 MB of archives. After this operation, 45.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main armhf bsdutils armhf 1:2.38.1-4ubuntu1 [87.8 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf debianutils armhf 5.7-0.4 [102 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf libmd0 armhf 1.0.4-2 [22.2 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblz4-1 armhf 1.9.4-1 [57.6 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf liblzma5 armhf 5.2.9-0.0 [89.8 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g armhf 1:1.2.13.dfsg-1ubuntu2 [48.8 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libapt-pkg6.0 armhf 2.5.4 [911 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main armhf tar armhf 1.34+dfsg-1.1 [269 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main armhf dpkg armhf 1.21.11ubuntu2 [1301 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main armhf grep armhf 3.8-3 [155 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main armhf login armhf 1:4.13+dfsg1-1ubuntu1 [197 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-modules-5.36 all 5.36.0-4ubuntu2 [2984 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libperl5.36 armhf 5.36.0-4ubuntu2 [4043 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl armhf 5.36.0-4ubuntu2 [235 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-base armhf 5.36.0-4ubuntu2 [1621 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main armhf libcrypt-dev armhf 1:4.4.33-1 [120 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main armhf libcrypt1 armhf 1:4.4.33-1 [91.3 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main armhf libaudit-common all 1:3.0.7-1ubuntu2 [5018 B] Get:19 http://ftpmaster.internal/ubuntu lunar/main armhf libcap-ng0 armhf 0.8.3-1build1 [13.5 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main armhf libaudit1 armhf 1:3.0.7-1ubuntu2 [42.7 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main armhf libsmartcols1 armhf 2.38.1-4ubuntu1 [95.4 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main armhf util-linux-extra armhf 2.38.1-4ubuntu1 [98.3 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main armhf util-linux armhf 2.38.1-4ubuntu1 [1159 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main armhf usrmerge all 33ubuntu1 [57.0 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf init-system-helpers all 1.65.2 [38.1 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf sysvinit-utils armhf 3.05-7ubuntu1 [25.9 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf debconf all 1.5.80 [125 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main armhf libpam0g armhf 1.5.2-5ubuntu1 [54.9 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main armhf libselinux1 armhf 3.4-1build1 [69.3 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main armhf libpam-modules-bin armhf 1.5.2-5ubuntu1 [41.1 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main armhf libpam-modules armhf 1.5.2-5ubuntu1 [266 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main armhf passwd armhf 1:4.13+dfsg1-1ubuntu1 [814 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf adduser all 3.129ubuntu1 [59.0 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgpg-error0 armhf 1.46-1 [60.4 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main armhf gpgv armhf 2.2.40-1ubuntu1 [193 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main armhf libseccomp2 armhf 2.5.4-1ubuntu2 [45.9 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf apt armhf 2.5.4 [1371 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf logsave armhf 1.46.6~rc1-1ubuntu1 [9960 B] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libext2fs2 armhf 1.46.6~rc1-1ubuntu1 [188 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf e2fsprogs armhf 1.46.6~rc1-1ubuntu1 [564 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main armhf mount armhf 2.38.1-4ubuntu1 [125 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf init armhf 1.65.2 [4810 B] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libacl1 armhf 2.3.1-2 [15.0 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libattr1 armhf 1:2.5.1-3 [9686 B] Get:45 http://ftpmaster.internal/ubuntu lunar/main armhf libblkid1 armhf 2.38.1-4ubuntu1 [137 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgmp10 armhf 2:6.2.1+dfsg1-1.1ubuntu1 [204 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main armhf libmount1 armhf 2.38.1-4ubuntu1 [152 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main armhf libpam-runtime all 1.5.2-5ubuntu1 [40.0 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main armhf libuuid1 armhf 2.38.1-4ubuntu1 [23.8 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libffi8 armhf 3.4.4-1 [20.2 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcom-err2 armhf 1.46.6~rc1-1ubuntu1 [8860 B] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libss2 armhf 1.46.6~rc1-1ubuntu1 [10.1 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libssl3 armhf 3.0.5-2ubuntu2 [1560 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf openssl armhf 3.0.5-2ubuntu2 [1148 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf ca-certificates all 20211016ubuntu1 [141 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main armhf libapparmor1 armhf 3.0.7-1ubuntu4 [32.3 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libjson-c5 armhf 0.16-2 [29.0 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcryptsetup12 armhf 2:2.5.0-6ubuntu3 [196 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main armhf libfdisk1 armhf 2.38.1-4ubuntu1 [186 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-1 [118 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkrb5-3 armhf 1.20.1-1 [321 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkrb5support0 armhf 1.20.1-1 [29.6 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libk5crypto3 armhf 1.20.1-1 [78.4 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main armhf libip4tc2 armhf 1.8.7-1ubuntu7 [17.4 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf readline-common all 8.2-1.2 [55.2 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libreadline8 armhf 8.2-1.2 [128 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsqlite3-0 armhf 3.40.0-1 [563 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main armhf tzdata all 2022g-0ubuntu2 [401 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main armhf libpng16-16 armhf 1.6.39-2 [166 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main armhf xz-utils armhf 5.2.9-0.0 [142 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main armhf advancecomp armhf 2.4-1 [190 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main armhf libctf0 armhf 2.39-8ubuntu2 [85.9 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/main armhf libctf-nobfd0 armhf 2.39-8ubuntu2 [85.4 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main armhf binutils-arm-linux-gnueabihf armhf 2.39-8ubuntu2 [2764 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main armhf libbinutils armhf 2.39-8ubuntu2 [438 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main armhf binutils armhf 2.39-8ubuntu2 [3106 B] Get:77 http://ftpmaster.internal/ubuntu lunar/main armhf binutils-common armhf 2.39-8ubuntu2 [223 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main armhf dpkg-dev all 1.21.11ubuntu2 [1070 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main armhf libdpkg-perl all 1.21.11ubuntu2 [242 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main armhf libfakeroot armhf 1.30.1-1ubuntu1 [26.4 kB] Get:81 http://ftpmaster.internal/ubuntu lunar/main armhf fakeroot armhf 1.30.1-1ubuntu1 [61.6 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libassuan0 armhf 2.5.5-5 [30.6 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main armhf pinentry-curses armhf 1.2.1-1ubuntu1 [35.8 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main armhf gpg armhf 2.2.40-1ubuntu1 [482 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main armhf gpgconf armhf 2.2.40-1ubuntu1 [117 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main armhf gpg-agent armhf 2.2.40-1ubuntu1 [236 kB] Get:87 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf linux-libc-dev armhf 5.19.0-23.24 [1306 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.2 MB in 3s (12.1 MB/s) (Reading database ... 13288 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-4ubuntu1_armhf.deb ... Unpacking bsdutils (1:2.38.1-4ubuntu1) over (1:2.38-4ubuntu1) ... Setting up bsdutils (1:2.38.1-4ubuntu1) ... (Reading database ... 13288 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.4_armhf.deb ... Unpacking debianutils (5.7-0.4) over (5.7-0.3) ... Setting up debianutils (5.7-0.4) ... Selecting previously unselected package libmd0:armhf. (Reading database ... 13288 files and directories currently installed.) Preparing to unpack .../libmd0_1.0.4-2_armhf.deb ... Unpacking libmd0:armhf (1.0.4-2) ... Setting up libmd0:armhf (1.0.4-2) ... (Reading database ... 13293 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1_armhf.deb ... Unpacking liblz4-1:armhf (1.9.4-1) over (1.9.3-2build2) ... Setting up liblz4-1:armhf (1.9.4-1) ... (Reading database ... 13293 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24902673 armhf lunar-proposed -c chroot:build-PACKAGEBUILD-24902673 --arch=armhf --dist=lunar-proposed --nolog plast_2.3.2+dfsg-10.dsc Initiating build PACKAGEBUILD-24902673 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-021.buildd +==============================================================================+ | plast 2.3.2+dfsg-10 (armhf) Mon, 05 Dec 2022 23:33:20 +0000 | +==============================================================================+ Package: plast Version: 2.3.2+dfsg-10 Source Version: 2.3.2+dfsg-10 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24902673/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/plast-KRKqt3/resolver-16ycHp' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- plast_2.3.2+dfsg-10.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/plast-KRKqt3/plast-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/plast-KRKqt3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [398 B] Get:5 copy:/<>/apt_archive ./ Packages [479 B] Fetched 1834 B in 0s (30.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java cmake cmake-data debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian java-common libarchive-zip-perl libarchive13 libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu71 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 liblcms2-2 libldap-2.5-0 liblerc4 libllvm15 libmagic-mgc libmagic1 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libpipeline1 libpixman-1-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsimde-dev libssh-4 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless po-debconf shared-mime-info ubuntu-mono ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libasound2-plugins alsa-utils cups-common low-memory-monitor gvfs liblcms2-utils pcscd lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser openjdk-17-demo openjdk-17-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: librsvg2-common curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libgl1-amber-dri libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin libldap-common publicsuffix libsasl2-modules libltdl-dev libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java cmake cmake-data debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian java-common libarchive-zip-perl libarchive13 libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libicu71 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 liblcms2-2 libldap-2.5-0 liblerc4 libllvm15 libmagic-mgc libmagic1 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libpipeline1 libpixman-1-0 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsimde-dev libssh-4 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libuv1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless po-debconf sbuild-build-depends-main-dummy shared-mime-info ubuntu-mono ucf x11-common 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 298 MB of archives. After this operation, 643 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [702 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main armhf libbsd0 armhf 0.11.7-1 [39.1 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf libdbus-1-3 armhf 1.14.0-2ubuntu3 [182 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main armhf libelf1 armhf 0.188-1 [43.9 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libexpat1 armhf 2.5.0-1 [63.4 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main armhf libfribidi0 armhf 1.0.8-2.1ubuntu1 [23.6 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libglib2.0-0 armhf 2.74.2-1 [1323 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main armhf libicu71 armhf 71.1-3ubuntu1 [10.3 MB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [588 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main armhf shared-mime-info armhf 2.2-1 [457 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main armhf ucf all 3.0043 [56.1 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main armhf bsdextrautils armhf 2.38.1-4ubuntu1 [76.4 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main armhf file armhf 1:5.41-4 [20.6 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gettext-base armhf 0.21-10 [37.3 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main armhf groff-base armhf 1.22.4-9 [849 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-common all 2.4.114-1 [5940 B] Get:20 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm2 armhf 2.4.114-1 [34.3 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libedit2 armhf 3.1-20221030-2 [78.3 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main armhf libnghttp2-14 armhf 1.50.0-1 [68.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main armhf libpsl5 armhf 0.21.0-1.2build2 [56.9 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main armhf libuv1 armhf 1.44.2-1 [76.2 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main armhf libxau6 armhf 1:1.0.9-1build5 [6622 B] Get:27 http://ftpmaster.internal/ubuntu lunar/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu5 [9452 B] Get:28 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb1 armhf 1.15-1 [45.4 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main armhf libx11-data all 2:1.8.1-2 [118 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main armhf libx11-6 armhf 2:1.8.1-2 [590 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main armhf libxext6 armhf 2:1.3.4-1build1 [26.4 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main armhf man-db armhf 2.11.1-1 [1183 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main armhf hicolor-icon-theme all 0.17-2 [9976 B] Get:34 http://ftpmaster.internal/ubuntu lunar/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [5638 B] Get:35 http://ftpmaster.internal/ubuntu lunar/main armhf libjpeg-turbo8 armhf 2.1.2-0ubuntu1 [116 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main armhf libjpeg8 armhf 8c-2ubuntu10 [2266 B] Get:37 http://ftpmaster.internal/ubuntu lunar/main armhf libdeflate0 armhf 1.14-1 [55.9 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main armhf libjbig0 armhf 2.1-6ubuntu1 [24.6 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main armhf liblerc4 armhf 4.0.0+ds-2ubuntu2 [151 kB] Get:40 http://ftpmaster.internal/ubuntu lunar/main armhf libwebp7 armhf 1.2.2-2build1 [165 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main armhf libtiff5 armhf 4.4.0-6ubuntu1 [171 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-1 [134 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gtk-update-icon-cache armhf 3.24.35-2ubuntu1 [36.2 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main armhf humanity-icon-theme all 0.6.16 [1282 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main armhf ubuntu-mono all 20.10-0ubuntu2 [153 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main armhf adwaita-icon-theme all 41.0-1ubuntu1 [3444 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main armhf at-spi2-common all 2.46.0-4 [4458 B] Get:48 http://ftpmaster.internal/ubuntu lunar/main armhf m4 armhf 1.4.19-1 [236 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main armhf autoconf all 2.71-2 [338 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf autopoint all 0.21-10 [421 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main armhf ca-certificates-java all 20220719 [12.4 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main armhf libarchive13 armhf 3.6.0-1ubuntu1 [338 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main armhf libbrotli1 armhf 1.0.9-2build7 [295 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-6ubuntu2 [18.7 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main armhf libsasl2-2 armhf 2.1.28+dfsg-6ubuntu2 [52.4 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-1ubuntu1 [160 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main armhf libssh-4 armhf 0.10.4-2 [163 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main armhf libcurl4 armhf 7.86.0-2 [252 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main armhf libjsoncpp25 armhf 1.9.5-4 [72.3 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main armhf librhash0 armhf 1.4.3-3 [142 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main armhf cmake-data all 3.25.1-1 [2049 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main armhf cmake armhf 3.25.1-1 [4975 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main armhf libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libtool all 2.4.7-5 [166 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main armhf dh-autoreconf all 20 [16.1 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main armhf libsub-override-perl all 0.09-4 [8706 B] Get:71 http://ftpmaster.internal/ubuntu lunar/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main armhf dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:73 http://ftpmaster.internal/ubuntu lunar/main armhf libdw1 armhf 0.188-1 [224 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main armhf dwz armhf 0.14+20220924-2 [109 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gettext armhf 0.21-10 [802 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main armhf debhelper all 13.10.1ubuntu1 [924 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf java-common all 0.73 [6320 B] Get:81 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-common-data armhf 0.8-6ubuntu1 [24.0 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-common3 armhf 0.8-6ubuntu1 [20.0 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-client3 armhf 0.8-6ubuntu1 [24.2 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main armhf libcups2 armhf 2.4.2-1ubuntu2 [229 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main armhf liblcms2-2 armhf 2.13.1-1 [131 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [324 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main armhf fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main armhf libfontconfig1 armhf 2.13.1-4.4ubuntu1 [107 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main armhf libnspr4 armhf 2:4.35-1 [92.8 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main armhf libnss3 armhf 2:3.85-1 [1226 kB] Get:92 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libasound2-data all 1.2.8-1 [19.4 kB] Get:93 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libasound2 armhf 1.2.8-1 [342 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:95 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libharfbuzz0b armhf 5.2.0-2 [381 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main armhf libpcsclite1 armhf 1.9.9-1 [19.7 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main armhf openjdk-17-jre-headless armhf 17.0.5+8-2ubuntu1 [42.1 MB] Get:98 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf default-jre-headless armhf 2:1.17-73 [2778 B] Get:99 http://ftpmaster.internal/ubuntu lunar/main armhf libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] Get:100 http://ftpmaster.internal/ubuntu lunar/main armhf libatk1.0-0 armhf 2.46.0-4 [44.0 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:104 http://ftpmaster.internal/ubuntu lunar/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:105 http://ftpmaster.internal/ubuntu lunar/main armhf libcairo2 armhf 1.16.0-6 [440 kB] Get:106 http://ftpmaster.internal/ubuntu lunar/main armhf fontconfig armhf 2.13.1-4.4ubuntu1 [181 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main armhf libthai-data all 0.1.29-1build1 [162 kB] Get:108 http://ftpmaster.internal/ubuntu lunar/main armhf libdatrie1 armhf 0.2.13-2 [16.8 kB] Get:109 http://ftpmaster.internal/ubuntu lunar/main armhf libthai0 armhf 0.1.29-1build1 [15.8 kB] Get:110 http://ftpmaster.internal/ubuntu lunar/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [204 kB] Get:111 http://ftpmaster.internal/ubuntu lunar/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [43.8 kB] Get:112 http://ftpmaster.internal/ubuntu lunar/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [32.7 kB] Get:113 http://ftpmaster.internal/ubuntu lunar/main armhf libxcomposite1 armhf 1:0.4.5-1build2 [6520 B] Get:114 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libxfixes3 armhf 1:6.0.0-2 [8966 B] Get:115 http://ftpmaster.internal/ubuntu lunar/main armhf libxcursor1 armhf 1:1.2.1-1 [18.2 kB] Get:116 http://ftpmaster.internal/ubuntu lunar/main armhf libxdamage1 armhf 1:1.1.5-2build2 [6320 B] Get:117 http://ftpmaster.internal/ubuntu lunar/main armhf libxi6 armhf 2:1.8-1build1 [26.6 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/main armhf libxinerama1 armhf 2:1.1.4-3 [6686 B] Get:119 http://ftpmaster.internal/ubuntu lunar/main armhf libxrandr2 armhf 2:1.5.2-2 [16.4 kB] Get:120 http://ftpmaster.internal/ubuntu lunar/main armhf libgtk2.0-0 armhf 2.24.33-2ubuntu2 [1747 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main armhf libglvnd0 armhf 1.5.0-1 [82.3 kB] Get:122 http://ftpmaster.internal/ubuntu lunar/main armhf libglapi-mesa armhf 22.2.4-1ubuntu1 [42.6 kB] Get:123 http://ftpmaster.internal/ubuntu lunar/main armhf libx11-xcb1 armhf 2:1.8.1-2 [7708 B] Get:124 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-dri2-0 armhf 1.15-1 [6872 B] Get:125 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-dri3-0 armhf 1.15-1 [6778 B] Get:126 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-glx0 armhf 1.15-1 [22.6 kB] Get:127 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-present0 armhf 1.15-1 [5526 B] Get:128 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-sync1 armhf 1.15-1 [8794 B] Get:129 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-xfixes0 armhf 1.15-1 [10.0 kB] Get:130 http://ftpmaster.internal/ubuntu lunar/main armhf libxshmfence1 armhf 1.3-1build4 [5080 B] Get:131 http://ftpmaster.internal/ubuntu lunar/main armhf libxxf86vm1 armhf 1:1.1.4-1build3 [9068 B] Get:132 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-amdgpu1 armhf 2.4.114-1 [18.3 kB] Get:133 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-nouveau2 armhf 2.4.114-1 [15.2 kB] Get:134 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-radeon1 armhf 2.4.114-1 [18.1 kB] Get:135 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libllvm15 armhf 1:15.0.6-3 [24.1 MB] Get:136 http://ftpmaster.internal/ubuntu lunar/main armhf libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:137 http://ftpmaster.internal/ubuntu lunar/main armhf libsensors5 armhf 1:3.6.0-7ubuntu1 [24.3 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main armhf libgl1-mesa-dri armhf 22.2.4-1ubuntu1 [6384 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main armhf libglx-mesa0 armhf 22.2.4-1ubuntu1 [132 kB] Get:140 http://ftpmaster.internal/ubuntu lunar/main armhf libglx0 armhf 1.5.0-1 [36.9 kB] Get:141 http://ftpmaster.internal/ubuntu lunar/main armhf libgl1 armhf 1.5.0-1 [103 kB] Get:142 http://ftpmaster.internal/ubuntu lunar/main armhf libgif7 armhf 5.2.1-2.5 [31.3 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:144 http://ftpmaster.internal/ubuntu lunar/main armhf libxtst6 armhf 2:1.2.3-1.1 [11.8 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/main armhf openjdk-17-jre armhf 17.0.5+8-2ubuntu1 [156 kB] Get:146 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf default-jre armhf 2:1.17-73 [910 B] Get:147 http://ftpmaster.internal/ubuntu lunar/main armhf openjdk-17-jdk-headless armhf 17.0.5+8-2ubuntu1 [176 MB] Get:148 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf default-jdk-headless armhf 2:1.17-73 [952 B] Get:149 http://ftpmaster.internal/ubuntu lunar/main armhf openjdk-17-jdk armhf 17.0.5+8-2ubuntu1 [4416 kB] Get:150 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf default-jdk armhf 2:1.17-73 [910 B] Get:151 http://ftpmaster.internal/ubuntu lunar/main armhf libpcre2-16-0 armhf 10.40-1ubuntu1 [179 kB] Get:152 http://ftpmaster.internal/ubuntu lunar/main armhf libpcre2-32-0 armhf 10.40-1ubuntu1 [172 kB] Get:153 http://ftpmaster.internal/ubuntu lunar/main armhf libpcre2-posix3 armhf 10.40-1ubuntu1 [5524 B] Get:154 http://ftpmaster.internal/ubuntu lunar/main armhf libpcre2-dev armhf 10.40-1ubuntu1 [663 kB] Get:155 http://ftpmaster.internal/ubuntu lunar/universe armhf libsimde-dev all 0.7.2-6 [261 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 298 MB in 17s (17.4 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 15252 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.11.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-1) ... Selecting previously unselected package libdbus-1-3:armhf. Preparing to unpack .../001-libdbus-1-3_1.14.0-2ubuntu3_armhf.deb ... Unpacking libdbus-1-3:armhf (1.14.0-2ubuntu3) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../002-libelf1_0.188-1_armhf.deb ... Unpacking libelf1:armhf (0.188-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../003-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../004-libfribidi0_1.0.8-2.1ubuntu1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2.1ubuntu1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../005-libglib2.0-0_2.74.2-1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.2-1) ... Selecting previously unselected package libicu71:armhf. Preparing to unpack .../006-libicu71_71.1-3ubuntu1_armhf.deb ... Unpacking libicu71:armhf (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../007-libxml2_2.9.14+dfsg-1.1_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../008-shared-mime-info_2.2-1_armhf.deb ... Unpacking shared-mime-info (2.2-1) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-4ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.41-4_armhf.deb ... 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Preparing to unpack .../144-default-jre_2%3a1.17-73_armhf.deb ... Unpacking default-jre (2:1.17-73) ... Selecting previously unselected package openjdk-17-jdk-headless:armhf. Preparing to unpack .../145-openjdk-17-jdk-headless_17.0.5+8-2ubuntu1_armhf.deb ... Unpacking openjdk-17-jdk-headless:armhf (17.0.5+8-2ubuntu1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../146-default-jdk-headless_2%3a1.17-73_armhf.deb ... Unpacking default-jdk-headless (2:1.17-73) ... Selecting previously unselected package openjdk-17-jdk:armhf. Preparing to unpack .../147-openjdk-17-jdk_17.0.5+8-2ubuntu1_armhf.deb ... Unpacking openjdk-17-jdk:armhf (17.0.5+8-2ubuntu1) ... Selecting previously unselected package default-jdk. Preparing to unpack .../148-default-jdk_2%3a1.17-73_armhf.deb ... Unpacking default-jdk (2:1.17-73) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../149-libpcre2-16-0_10.40-1ubuntu1_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.40-1ubuntu1) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../150-libpcre2-32-0_10.40-1ubuntu1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.40-1ubuntu1) ... Selecting previously unselected package libpcre2-posix3:armhf. Preparing to unpack .../151-libpcre2-posix3_10.40-1ubuntu1_armhf.deb ... Unpacking libpcre2-posix3:armhf (10.40-1ubuntu1) ... Selecting previously unselected package libpcre2-dev:armhf. Preparing to unpack .../152-libpcre2-dev_10.40-1ubuntu1_armhf.deb ... Unpacking libpcre2-dev:armhf (10.40-1ubuntu1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../153-libsimde-dev_0.7.2-6_all.deb ... Unpacking libsimde-dev (0.7.2-6) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../154-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-1build2) ... Setting up libsimde-dev (0.7.2-6) ... Setting up liblcms2-2:armhf (2.13.1-1) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libicu71:armhf (71.1-3ubuntu1) ... Setting up libxau6:armhf (1:1.0.9-1build5) ... Setting up libpsl5:armhf (0.21.0-1.2build2) ... Setting up liblerc4:armhf (4.0.0+ds-2ubuntu2) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.73) ... Setting up libdatrie1:armhf (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.2-1) ... No schema files found: doing nothing. Setting up libglvnd0:armhf (1.5.0-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build7) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7ubuntu1) ... Setting up libnghttp2-14:armhf (1.50.0-1) ... Setting up libmagic1:armhf (1:5.41-4) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libjbig0:armhf (2.1-6ubuntu1) ... Setting up libpcre2-16-0:armhf (10.40-1ubuntu1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-6ubuntu2) ... Setting up libasound2-data (1.2.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.40-1ubuntu1) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up libfreetype6:armhf (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.8.1-2) ... Setting up libnspr4:armhf (2:4.35-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libavahi-common-data:armhf (0.8-6ubuntu1) ... Setting up libdbus-1-3:armhf (1.14.0-2ubuntu3) ... Setting up libfribidi0:armhf (1.0.8-2.1ubuntu1) ... Setting up autopoint (0.21-10) ... Setting up libjsoncpp25:armhf (1.9.5-4) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libpcsclite1:armhf (1.9.9-1) ... Setting up ucf (3.0043) ... Setting up libsensors5:armhf (1:3.6.0-7ubuntu1) ... Setting up libjpeg-turbo8:armhf (2.1.2-0ubuntu1) ... Setting up libglapi-mesa:armhf (22.2.4-1ubuntu1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:armhf (0.10.4-2) ... Setting up autoconf (2.71-2) ... Setting up libwebp7:armhf (1.2.2-2build1) ... Setting up libgif7:armhf (5.2.1-2.5) ... Setting up libpcre2-posix3:armhf (10.40-1ubuntu1) ... Setting up libxshmfence1:armhf (1.3-1build4) ... Setting up at-spi2-common (2.46.0-4) ... Setting up librhash0:armhf (1.4.3-3) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libasound2:armhf (1.2.8-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:armhf (5.2.0-2) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... Setting up cmake-data (3.25.1-1) ... Setting up libatk1.0-0:armhf (2.46.0-4) ... Setting up ca-certificates-java (20220719) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:EC-ACC.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem done. Setting up libbsd0:armhf (0.11.7-1) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:armhf (0.188-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.1) ... Setting up libjpeg8:armhf (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:armhf (0.188-1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-10) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libpcre2-dev:armhf (10.40-1ubuntu1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:armhf (3.6.0-1ubuntu1) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libavahi-common3:armhf (0.8-6ubuntu1) ... Setting up libnss3:armhf (2:3.85-1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1build1) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up shared-mime-info (2.2-1) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up libdrm2:armhf (2.4.114-1) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up libllvm15:armhf (1:15.0.6-3) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (7.86.0-2) ... Setting up libx11-6:armhf (2:1.8.1-2) ... Setting up libtiff5:armhf (4.4.0-6ubuntu1) ... Setting up libfontconfig1:armhf (2.13.1-4.4ubuntu1) ... Setting up libxcomposite1:armhf (1:0.4.5-1build2) ... Setting up libavahi-client3:armhf (0.8-6ubuntu1) ... Setting up libdrm-amdgpu1:armhf (2.4.114-1) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libx11-xcb1:armhf (2:1.8.1-2) ... Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.114-1) ... Setting up libxdamage1:armhf (1:1.1.5-2build2) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libdrm-radeon1:armhf (2.4.114-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ... Setting up libgl1-mesa-dri:armhf (22.2.4-1ubuntu1) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.16.0-6) ... Setting up libxxf86vm1:armhf (1:1.1.4-1build3) ... Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libxinerama1:armhf (2:1.1.4-3) ... Setting up libxrandr2:armhf (2:1.5.2-2) ... Setting up libcups2:armhf (2.4.2-1ubuntu2) ... Setting up cmake (3.25.1-1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-1) ... Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ... Setting up gtk-update-icon-cache (3.24.35-2ubuntu1) ... Setting up libglx-mesa0:armhf (22.2.4-1ubuntu1) ... Setting up libxi6:armhf (2:1.8-1build1) ... Setting up libglx0:armhf (1.5.0-1) ... Setting up libxtst6:armhf (2:1.2.3-1.1) ... Setting up libxcursor1:armhf (1:1.2.1-1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up libgl1:armhf (1.5.0-1) ... Setting up openjdk-17-jre-headless:armhf (17.0.5+8-2ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (2:1.17-73) ... Setting up openjdk-17-jdk-headless:armhf (17.0.5+8-2ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jdk-headless (2:1.17-73) ... Setting up adwaita-icon-theme (41.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:armhf (2.24.33-2ubuntu2) ... Setting up humanity-icon-theme (0.6.16) ... Setting up openjdk-17-jre:armhf (17.0.5+8-2ubuntu1) ... Setting up ubuntu-mono (20.10-0ubuntu2) ... Setting up default-jre (2:1.17-73) ... Setting up openjdk-17-jdk:armhf (17.0.5+8-2ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk (2:1.17-73) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39-8ubuntu2 dpkg-dev_1.21.11ubuntu2 g++-12_12.2.0-9ubuntu1 gcc-12_12.2.0-9ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-9ubuntu1 libstdc++6_12.2.0-9ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 adwaita-icon-theme_41.0-1ubuntu1 apt_2.5.4 at-spi2-common_2.46.0-4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 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usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 x11-common_1:7.7+23ubuntu2 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plast Binary: plast, plast-example Architecture: any all Version: 2.3.2+dfsg-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://plast.inria.fr/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plast Vcs-Git: https://salsa.debian.org/med-team/plast.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev Package-List: plast deb science optional arch=any plast-example deb science optional arch=all Checksums-Sha1: 693e7fd60cb7cd41a9843320e1349a7a23d61671 5726436 plast_2.3.2+dfsg.orig.tar.xz e8ce02a1753cc87595f9e55e6976761ce12755e8 21100 plast_2.3.2+dfsg-10.debian.tar.xz Checksums-Sha256: db8bcabc66ecc2555d1aeeba68dfc459dd7977251274c1f793e78da092ee9ff1 5726436 plast_2.3.2+dfsg.orig.tar.xz 111b31c54c0b30d50de0c3d56c441f3a4ce16bab9964e7cdbe822d69eaf39b46 21100 plast_2.3.2+dfsg-10.debian.tar.xz Files: db86adecf11d4eb4e75280a4da50ce13 5726436 plast_2.3.2+dfsg.orig.tar.xz 4a5ea81dd68b36ea95c7247ce11d8cd0 21100 plast_2.3.2+dfsg-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOOOhQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEuWQ/8DxgRClqvEeEuDG2GDJqnmI1BNjxkZxFy 4cPK7fK9eLRpmybgiCoRd9BoA4BsaT4ZNyRTV/y9YCCTRaOPCGTFkyvBF5opNH7Y AGZ/Fy+N8Dl3h5AjfXFCsQgU9s/vUvUGxPtDgYFr3jy4TFyyXWPCZnOvsrbI6/2k tsW39EIEi8IjGCdZrpUJCyTjO5HGst/xjA5UfW/c4KB3JaP0ws1JhH7MYGH5LO4P 8/anOMMOgdKdB2VeLsZ33TyFko+Wvdim7dDZ9mr4zYxLeXgzTtw+QycY9EsgPp2K 4q9s3/DYKRz/SjOmNsljbwqB2ArROLb+ACPbjYLXVbER6lWx+YQ8qM4Mh0jcXHjt 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dpkg-source: info: applying reproducible.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying pcre.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24902673 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24902673 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24902673 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' dh_auto_build cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/CMakeFiles/plast.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[4]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF 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-I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /<>/src/algo/core/impl/AbstractAlgorithm.cpp [ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/<>/src/algo/core/impl/BasicAlgoIndexator.cpp [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /<>/src/algo/core/impl/DatabasesProvider.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoConfig.cpp [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /<>/src/algo/core/impl/AlgoIndexatorNucleotide.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /<>/src/algo/core/impl/PlastnAlgoConfig.cpp [ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /<>/src/algo/core/impl/AlgorithmPlastn.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, from /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, misc::Range > >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘std::vector, misc::Range > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)’ at /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp:523:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /<>/src/algo/core/impl/ScoreMatrix.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time 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/usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /<>/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 6%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /<>/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF 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CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /<>/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 8%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoConfig.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /<>/src/algo/hits/seed/SeedHitIterator.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /<>/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /<>/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIterator.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30, from /<>/src/algo/stats/impl/Statistics.cpp:23: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]’, inlined from ‘void statistics::impl::QueryInformation::build()’ at /<>/src/algo/stats/impl/Statistics.cpp:410:46: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/AbstractAlignmentContainer.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /<>/src/alignment/core/impl/Alignment.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /<>/src/alignment/core/impl/AlignmentContainerFactory.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/BasicAlignmentContainer.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, from /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp:23: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, misc::Range > >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, misc::Range >}; _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, misc::Range >; _Alloc = std::allocator, misc::Range > >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘std::vector, misc::Range > > algo::core::impl::DefaultEnvironment::buildUri(database::IDatabaseQuickReader*, database::IDatabaseQuickReader*)’ at /<>/src/algo/core/impl/DefaultAlgoEnvironment.cpp:523:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, misc::Range >*, std::vector, misc::Range > > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /<>/src/alignment/core/impl/HspContainer.cpp [ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /<>/src/algo/core/impl/PlastnAlgoConfig.cpp [ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/UngapAlignmentContainer.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /<>/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterFactory.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterOperator.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterXML.cpp [ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /<>/src/algo/core/impl/ScoreMatrix.cpp [ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /<>/src/algo/hits/common/AbstractHitIterator.cpp [ 17%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /<>/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28, from /<>/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void alignment::filter::impl::AlignmentFilterUnaryOperator::configure(const std::vector >&) [with T = double]’ at /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:183:31, inlined from ‘alignment::filter::impl::AlignmentFilterUnaryOperator::AlignmentFilterUnaryOperator(const std::vector >&) [with T = double]’ at /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:120:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /<>/src/algo/hits/common/AbstractPipeHitIterator.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /<>/src/alignment/tools/impl/AlignmentOverlapCmd.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /<>/src/alignment/tools/impl/AlignmentSplitter.cpp [ 19%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF 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-I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /<>/src/database/impl/AbstractSequenceIterator.cpp [ 27%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /<>/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 27%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 28%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /<>/src/algo/hits/seed/SeedHitIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 29%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /<>/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 29%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /<>/src/algo/hits/ungap/UngapExtendHitIterator.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, from /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:146:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:152:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIterator.cpp [ 30%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 30%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 30%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /<>/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /<>/src/algo/stats/impl/Statistics.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /<>/src/algo/stats/impl/StatisticsPlastn.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/algo/stats/impl/Statistics.hpp:30, from /<>/src/algo/stats/impl/Statistics.cpp:23: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const statistics::IQueryInformation::SequenceInfo&}; _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = statistics::IQueryInformation::SequenceInfo; _Alloc = std::allocator]’, inlined from ‘void statistics::impl::QueryInformation::build()’ at /<>/src/algo/stats/impl/Statistics.cpp:410:46: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /<>/src/algo/stats/impl/StatisticsSpouge.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/AbstractAlignmentContainer.cpp /<>/src/algo/stats/impl/StatisticsPlastn.cpp: In member function ‘double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)’: /<>/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 33%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /<>/src/alignment/core/impl/Alignment.cpp [ 33%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /<>/src/alignment/core/impl/AlignmentContainerFactory.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 34%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o -c /<>/src/alignment/core/impl/HspContainer.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /<>/src/alignment/core/impl/UngapAlignmentContainer.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /<>/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterFactory.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterOperator.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterOperator.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -MF CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /<>/src/alignment/filter/impl/AlignmentFilterXML.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /<>/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp [ 38%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /<>/src/alignment/tools/impl/AlignmentOverlapCmd.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, from /<>/src/database/impl/CompositeSequenceDatabase.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)’ at /<>/src/database/impl/CompositeSequenceDatabase.cpp:48:33: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)’ at /<>/src/database/impl/CompositeSequenceDatabase.cpp:67:37: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /<>/src/alignment/tools/impl/AlignmentSplitter.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/alignment/core/api/Alignment.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/alignment/filter/api/IAlignmentFilter.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp:28, from /<>/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void alignment::filter::impl::AlignmentFilterUnaryOperator::configure(const std::vector >&) [with T = double]’ at /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:183:31, inlined from ‘alignment::filter::impl::AlignmentFilterUnaryOperator::AlignmentFilterUnaryOperator(const std::vector >&) [with T = double]’ at /<>/obj-arm-linux-gnueabihf/include/alignment/filter/impl/AlignmentFilterOperator.hpp:120:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp [ 39%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /<>/src/alignment/tools/impl/AlignmentSplitterBanded.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o -c /<>/src/alignment/tools/impl/SemiGappedAlign.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, from /<>/src/database/impl/FastaDatabaseQuickReader.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:121:40: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:164:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:254:32: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -MF CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /<>/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/CompareContainerVisitor.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c /<>/src/alignment/visitors/impl/CompareResultVisitor.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /<>/src/alignment/visitors/impl/FilterContainerVisitor.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /<>/src/alignment/visitors/impl/ModelBuilderVisitor.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /<>/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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/<>/src/database/impl/SequenceTokenizer.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /<>/src/database/impl/BasicSequenceBuilder.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /<>/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /<>/src/database/impl/BlastdbFileIndexReader.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /<>/src/database/impl/BlastdbSequenceIterator.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/BlastdbDatabaseQuickReader.hpp:30, from /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:146:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::BlastdbDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/BlastdbDatabaseQuickReader.cpp:152:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /<>/src/database/impl/BufferedSequenceDatabase.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /<>/src/database/impl/CompositeSequenceDatabase.cpp [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/database/impl/CompositeSequenceDatabase.hpp:31, from /<>/src/database/impl/CompositeSequenceDatabase.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)’ at /<>/src/database/impl/CompositeSequenceDatabase.cpp:48:33: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘database::impl::CompositeSequenceDatabase::CompositeSequenceDatabase(std::__cxx11::list)’ at /<>/src/database/impl/CompositeSequenceDatabase.cpp:67:37: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /<>/src/database/impl/DefaultAlphabet.cpp [ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /<>/src/designpattern/impl/WrapperIterator.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /<>/src/database/impl/FastaDatabaseQuickReader.cpp [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /<>/src/database/impl/FastaSequenceIterator.cpp [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In member function ‘virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function ‘static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)’: /<>/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IDatabaseQuickReader.hpp:39, from /<>/obj-arm-linux-gnueabihf/include/database/impl/FastaDatabaseQuickReader.hpp:30, from /<>/src/database/impl/FastaDatabaseQuickReader.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:121:40: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual void database::impl::FastaDatabaseQuickReader::read(u_int64_t)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:164:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)’ at /<>/src/database/impl/FastaDatabaseQuickReader.cpp:254:32: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /<>/src/database/impl/FastaSequenceOutput.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /<>/src/database/impl/ReadingFrameSequenceIterator.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /<>/src/database/impl/ReverseStrandSequenceIterator.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28, from /<>/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28, from /<>/src/index/impl/DatabaseIndex.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)’ at /<>/src/index/impl/DatabaseIndex.cpp:677:36: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)’ at /<>/src/index/impl/DatabaseIndex.cpp:678:36: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /<>/src/database/impl/Sequence.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /<>/src/database/impl/SequenceTokenizer.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /<>/src/database/impl/StringSequenceIterator.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /<>/src/designpattern/impl/CommandDispatcher.cpp [ 60%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /<>/src/designpattern/impl/ConfigFileProperties.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /<>/src/designpattern/impl/DirectoryIterator.cpp [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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/<>/src/launcher/core/PlastOptionsParser.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /<>/src/designpattern/impl/FileLineIterator.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /<>/src/designpattern/impl/Observer.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /<>/src/designpattern/impl/Property.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /<>/src/designpattern/impl/SystemCommand.cpp /<>/src/designpattern/impl/SystemCommand.cpp: In destructor ‘dp::impl::SystemCommand::~SystemCommand()’: /<>/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 63%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /<>/src/designpattern/impl/TokenizerIterator.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include 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CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /<>/src/designpattern/impl/XmlReader.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /<>/src/index/impl/AbstractDatabaseIndex.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /<>/src/index/impl/DatabaseIndex.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 67%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /<>/src/index/impl/DatabaseIndexHash.cpp [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndex.cpp [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp In file included from /usr/include/c++/12/vector:70, from /<>/obj-arm-linux-gnueabihf/include/database/api/IAlphabet.hpp:41, from /<>/obj-arm-linux-gnueabihf/include/database/api/IWord.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequence.hpp:30, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceIterator.hpp:34, from /<>/obj-arm-linux-gnueabihf/include/database/api/ISequenceDatabase.hpp:36, from /<>/obj-arm-linux-gnueabihf/include/index/impl/AbstractDatabaseIndex.hpp:28, from /<>/obj-arm-linux-gnueabihf/include/index/impl/DatabaseIndex.hpp:28, from /<>/src/index/impl/DatabaseIndex.cpp:17: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)’ at /<>/src/index/impl/DatabaseIndex.cpp:677:36: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual seed::ISeedIterator* indexation::impl::DatabaseIndexCodonStopOptim::createSeedsIterator(const database::IWord&)’ at /<>/src/index/impl/DatabaseIndex.cpp:678:36: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /<>/src/index/impl/DatabaseNucleotidIndexOptim.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 70%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /<>/src/index/impl/retrievall.c /<>/src/index/impl/retrievall.c:1075:16: warning: ‘get_bits_value’ is static but used in inline function ‘get_packed_value’ which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /<>/src/launcher/core/PlastCmd.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /<>/src/launcher/core/PlastOptionsParser.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /<>/src/launcher/jni/Helper.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /<>/src/launcher/jni/Wrapper.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /<>/src/misc/impl/OptionsParser.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp In file included from /usr/include/c++/12/vector:70, from /<>/src/misc/impl/ObsfucatedString.cpp:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘misc::impl::ObsfucatedString::ObsfucatedString(LONG, ...)’ at /<>/src/misc/impl/ObsfucatedString.cpp:37:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘misc::impl::ObsfucatedString::ObsfucatedString(LONG, ...)’ at /<>/src/misc/impl/ObsfucatedString.cpp:41:83: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘static std::string misc::impl::ObsfucatedString::obsfucate(const std::string&)’ at /<>/src/misc/impl/ObsfucatedString.cpp:125:29: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, inlined from ‘static std::string misc::impl::ObsfucatedString::obsfucate(const std::string&)’ at /<>/src/misc/impl/ObsfucatedString.cpp:132:33: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /<>/src/misc/impl/RangeTree.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /<>/src/os/impl/DefaultOsFactory.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function ‘jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)’: /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 78%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /<>/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /<>/src/launcher/observers/AbstractProgressionObserver.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /<>/src/launcher/observers/AlgoExecutionObserver.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/launcher/observers/AbstractProgressionObserver.cpp: In member function ‘std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)’: /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoHitsResultObserver.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /<>/src/launcher/observers/AlgoResultObserver.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 86%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 86%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 87%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /<>/src/launcher/observers/BargraphObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /<>/src/launcher/observers/FileProgressionObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /<>/src/misc/api/CompleteSubjectDatabaseStats.cpp /<>/src/launcher/observers/BargraphObserver.cpp: In member function ‘void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)’: /<>/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /<>/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 88%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /<>/src/misc/impl/ObsfucatedString.cpp /<>/src/launcher/observers/FileProgressionObserver.cpp: In destructor ‘virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()’: /<>/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /<>/src/launcher/observers/FileProgressionObserver.cpp: In member function ‘virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)’: /<>/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | 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CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /<>/src/os/impl/LinuxFile.cpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /<>/src/os/impl/LinuxFile.cpp: In destructor ‘os::impl::LinuxFile::~LinuxFile()’: /<>/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 91%] Built target PlastLibrary [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /<>/src/os/impl/LinuxMemory.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /<>/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /<>/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /<>/src/os/impl/LinuxTime.cpp /<>/src/os/impl/LinuxMemory.cpp: In member function ‘virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()’: /<>/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /<>/src/os/impl/MacOsFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /<>/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /<>/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /<>/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /<>/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /<>/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /<>/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /<>/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /<>/src/os/impl/WindowsThread.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /<>/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /<>/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /<>/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /<>/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /<>/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /<>/src/seed/impl/SubSeedModel.cpp /<>/src/seed/impl/SubSeedModel.cpp: In member function ‘void seed::impl::SubSeedModel::dump()’: /<>/src/seed/impl/SubSeedModel.cpp:243:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:243:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /<>/src/seed/impl/SubSeedModel.cpp:248:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 98%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /<>/src/seg/impl/DustMasker.cpp [ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /<>/src/seg/impl/dust.c [ 98%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /<>/src/seg/impl/genwin.c [ 99%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /<>/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/<>/obj-arm-linux-gnueabihf/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /<>/src/tools/PlastCmd.cpp /<>/src/tools/PlastCmd.cpp: In function ‘int main(int, char**)’: /<>/src/tools/PlastCmd.cpp:120:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 8 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [100%] Linking CXX executable bin/None/plast /usr/bin/cmake -E cmake_link_script CMakeFiles/plast.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre2-8 make[4]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target plast make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>' scripts/test-plast.sh Start PLAST... obj-arm-linux-gnueabihf/bin/None/plast -p plastp -i /<>/db/query.fa -d /<>/db/tursiops.fa -o obj-arm-linux-gnueabihf/bin/None/out.txt *** SUCCESS: result file is: obj-arm-linux-gnueabihf/bin/None/out.txt make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_installdirs -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/include -- Installing: /<>/debian/tmp/usr/include/seed -- Installing: /<>/debian/tmp/usr/include/seed/impl -- Installing: /<>/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeedIterator.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeed.hpp -- Installing: /<>/debian/tmp/usr/include/seed/api/ISeedModel.hpp -- Installing: /<>/debian/tmp/usr/include/alignment -- Installing: /<>/debian/tmp/usr/include/alignment/filter -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/filter/api -- Installing: /<>/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/core/api/Alignment.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp -- Installing: /<>/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp -- 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/<>/debian/tmp/usr/include/index/api -- Installing: /<>/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp -- Installing: /<>/debian/tmp/usr/include/os -- Installing: /<>/debian/tmp/usr/include/os/impl -- Installing: /<>/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/ZlibFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/TimeTools.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/LinuxThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsTime.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/impl/WindowsThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/api -- Installing: /<>/debian/tmp/usr/include/os/api/IMemory.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IResource.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/ITime.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IFile.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IThread.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IOsFactory.hpp -- Installing: /<>/debian/tmp/usr/include/os/api/IMemoryFile.hpp -- Installing: /<>/debian/tmp/usr/include/algo -- Installing: /<>/debian/tmp/usr/include/algo/hits -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/common -- Installing: /<>/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/api -- Installing: /<>/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /<>/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core -- Installing: /<>/debian/tmp/usr/include/algo/core/impl -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /<>/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /<>/debian/tmp/usr/include/algo/stats/api -- Installing: /<>/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /<>/debian/tmp/usr/include/tools -- Installing: /<>/debian/tmp/usr/include/seg -- Installing: /<>/debian/tmp/usr/include/seg/impl -- Installing: /<>/debian/tmp/usr/include/seg/impl/lnfac.pri -- Installing: /<>/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /<>/debian/tmp/usr/include/seg/api -- Installing: /<>/debian/tmp/usr/include/seg/api/seg.h -- Installing: /<>/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /<>/debian/tmp/usr/include/designpattern -- Installing: /<>/debian/tmp/usr/include/designpattern/impl -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Property.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Observer.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api -- Installing: /<>/debian/tmp/usr/include/designpattern/api/ICommand.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/Iterator.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/IProperty.hpp -- Installing: /<>/debian/tmp/usr/include/designpattern/api/IObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher -- Installing: /<>/debian/tmp/usr/include/launcher/observers -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/Wrapper.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/JniObsfucation.h -- Installing: /<>/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /<>/debian/tmp/usr/include/launcher/core -- Installing: /<>/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp -- Installing: /<>/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /<>/debian/tmp/usr/include/database -- Installing: /<>/debian/tmp/usr/include/database/impl -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp -- Installing: /<>/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp -- Installing: /<>/debian/tmp/usr/include/database/api -- Installing: /<>/debian/tmp/usr/include/database/api/ISequence.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/IAlphabet.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/IWord.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceCache.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp -- Installing: /<>/debian/tmp/usr/include/database/api/ISequenceIterator.hpp make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' debian/rules override_dh_install-arch make[1]: Entering directory '/<>' dh_install -a # install binary cp -a obj-arm-linux-gnueabihf/bin/*/plast debian/plast/usr/lib/plast/bin/ # no need for the includes rm -rf debian/*/usr/include make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake 22f3625dc2d4095fd63338af91e520c50dd5fd59 dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: debian/plast/usr/lib/plast/bin/plast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--buildsystem=cmake debian/rules override_dh_gencontrol-arch make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), " dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined make[1]: Leaving directory '/<>' dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing plast (in debian/plast); do_strip: , oemstrip: pkgstriptranslations: processing plast-dbgsym (in debian/.debhelper/plast/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/plast/dbgsym-root/DEBIAN/control, package plast-dbgsym, directory debian/.debhelper/plast/dbgsym-root dpkg-deb: building package 'plast-dbgsym' in 'debian/.debhelper/scratch-space/build-plast/plast-dbgsym_2.3.2+dfsg-10_armhf.deb'. pkgstripfiles: processing control file: debian/plast/DEBIAN/control, package plast, directory debian/plast pkgstripfiles: Running PNG optimization (using 4 cpus) for package plast ... pkgstripfiles: No PNG files. dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-10_armhf.deb'. Renaming plast-dbgsym_2.3.2+dfsg-10_armhf.deb to plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb dpkg-genbuildinfo --build=any -O../plast_2.3.2+dfsg-10_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../plast_2.3.2+dfsg-10_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-05T23:41:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plast_2.3.2+dfsg-10_armhf.changes: ---------------------------------- Format: 1.8 Date: Mon, 05 Dec 2022 18:19:37 +0100 Source: plast Binary: plast Built-For-Profiles: noudeb Architecture: armhf Version: 2.3.2+dfsg-10 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: plast - Parallel Local Sequence Alignment Search Tool Changes: plast (2.3.2+dfsg-10) unstable; urgency=medium . * Fix watch file Checksums-Sha1: 1cf9729abb9ad8604263dc1ead429ffb0b8f2f12 6146546 plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb 13561f371e61beb547eda54f417e41db8cc9af16 9809 plast_2.3.2+dfsg-10_armhf.buildinfo 291103b15070823eec5668264c34ac79dcef31af 547848 plast_2.3.2+dfsg-10_armhf.deb Checksums-Sha256: 750e386ed495fb2deaa019ef6b7ea403226f46182539e755cd776fdfd5003849 6146546 plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb 07120db742d3329950474eab965c80da315e5b6c3f0578422368ffcc687d9fc7 9809 plast_2.3.2+dfsg-10_armhf.buildinfo d261af3d8e11bc8905a8b4245b32d393e4a42b9e9129cf2e538d6ee73d448961 547848 plast_2.3.2+dfsg-10_armhf.deb Files: 87941a596b1ef3056e2dee149ba85923 6146546 debug optional plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb ee945916d7979b78df61dd14ec03d517 9809 science optional plast_2.3.2+dfsg-10_armhf.buildinfo af8972701ffd808f6cef4b7746c90fe2 547848 science optional plast_2.3.2+dfsg-10_armhf.deb /<>/plast_2.3.2+dfsg-10_armhf.changes.new could not be renamed to /<>/plast_2.3.2+dfsg-10_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: plast Binary: plast plast-dbgsym Architecture: armhf Version: 2.3.2+dfsg-10 Checksums-Md5: 87941a596b1ef3056e2dee149ba85923 6146546 plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb af8972701ffd808f6cef4b7746c90fe2 547848 plast_2.3.2+dfsg-10_armhf.deb Checksums-Sha1: 1cf9729abb9ad8604263dc1ead429ffb0b8f2f12 6146546 plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb 291103b15070823eec5668264c34ac79dcef31af 547848 plast_2.3.2+dfsg-10_armhf.deb Checksums-Sha256: 750e386ed495fb2deaa019ef6b7ea403226f46182539e755cd776fdfd5003849 6146546 plast-dbgsym_2.3.2+dfsg-10_armhf.ddeb d261af3d8e11bc8905a8b4245b32d393e4a42b9e9129cf2e538d6ee73d448961 547848 plast_2.3.2+dfsg-10_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 05 Dec 2022 23:41:55 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adwaita-icon-theme (= 41.0-1ubuntu1), at-spi2-common (= 2.46.0-4), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39-8ubuntu2), binutils-arm-linux-gnueabihf (= 2.39-8ubuntu2), binutils-common (= 2.39-8ubuntu2), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016ubuntu1), ca-certificates-java (= 20220719), cmake (= 3.25.1-1), cmake-data (= 3.25.1-1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-9ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.80), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), default-jdk (= 2:1.17-73), default-jdk-headless (= 2:1.17-73), default-jre (= 2:1.17-73), default-jre-headless (= 2:1.17-73), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-1), dpkg (= 1.21.11ubuntu2), dpkg-dev (= 1.21.11ubuntu2), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-9ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-9ubuntu1), gcc-12-base (= 12.2.0-9ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gtk-update-icon-cache (= 3.24.35-2ubuntu1), gzip (= 1.12-1ubuntu1), hicolor-icon-theme (= 0.17-2), hostname (= 3.23ubuntu2), humanity-icon-theme (= 0.6.16), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), java-common (= 0.73), libacl1 (= 2.3.1-2), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan8 (= 12.2.0-9ubuntu1), libasound2 (= 1.2.8-1), libasound2-data (= 1.2.8-1), libatk1.0-0 (= 2.46.0-4), libatomic1 (= 12.2.0-9ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libavahi-client3 (= 0.8-6ubuntu1), libavahi-common-data (= 0.8-6ubuntu1), libavahi-common3 (= 0.8-6ubuntu1), libbinutils (= 2.39-8ubuntu2), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.7-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcairo2 (= 1.16.0-6), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-9ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39-8ubuntu2), libctf0 (= 2.39-8ubuntu2), libcups2 (= 2.4.2-1ubuntu2), libcurl4 (= 7.86.0-2), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdbus-1-3 (= 1.14.0-2ubuntu3), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.14-1), libdpkg-perl (= 1.21.11ubuntu2), libdrm-amdgpu1 (= 2.4.114-1), libdrm-common (= 2.4.114-1), libdrm-nouveau2 (= 2.4.114-1), libdrm-radeon1 (= 2.4.114-1), libdrm2 (= 2.4.114-1), libdw1 (= 0.188-1), libedit2 (= 3.1-20221030-2), libelf1 (= 0.188-1), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-2), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-9ubuntu1), libgcc-s1 (= 12.2.0-9ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-1), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-1), libgif7 (= 5.2.1-2.5), libgl1 (= 1.5.0-1), libgl1-mesa-dri (= 22.2.4-1ubuntu1), libglapi-mesa (= 22.2.4-1ubuntu1), libglib2.0-0 (= 2.74.2-1), libglvnd0 (= 1.5.0-1), libglx-mesa0 (= 22.2.4-1ubuntu1), libglx0 (= 1.5.0-1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-9ubuntu1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-1), libgtk2.0-0 (= 2.24.33-2ubuntu2), libgtk2.0-common (= 2.24.33-2ubuntu2), libharfbuzz0b (= 5.2.0-2), libhogweed6 (= 3.8.1-2), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libisl23 (= 0.25-1), libjbig0 (= 2.1-6ubuntu1), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), liblcms2-2 (= 2.13.1-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), libllvm15 (= 1:15.0.6-3), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.9-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libnspr4 (= 2:4.35-1), libnss3 (= 2:3.85-1), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpango-1.0-0 (= 1.50.10+ds-1), libpangocairo-1.0-0 (= 1.50.10+ds-1), libpangoft2-1.0-0 (= 1.50.10+ds-1), libpcre2-16-0 (= 10.40-1ubuntu1), libpcre2-32-0 (= 10.40-1ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre2-dev (= 10.40-1ubuntu1), libpcre2-posix3 (= 10.40-1ubuntu1), libpcsclite1 (= 1.9.9-1), libperl5.36 (= 5.36.0-4ubuntu2), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.39-2), libprocps8 (= 2:3.3.17-7ubuntu1), libpsl5 (= 0.21.0-1.2build2), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsensors-config (= 1:3.6.0-7ubuntu1), libsensors5 (= 1:3.6.0-7ubuntu1), libsimde-dev (= 0.7.2-6), libsmartcols1 (= 2.38.1-4ubuntu1), libsqlite3-0 (= 3.40.0-1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-9ubuntu1), libstdc++6 (= 12.2.0-9ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.19.0-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0-6ubuntu1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libubsan1 (= 12.2.0-9ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libuv1 (= 1.44.2-1), libwebp7 (= 1.2.2-2build1), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libx11-xcb1 (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1build5), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-present0 (= 1.15-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-xfixes0 (= 1.15-1), libxcb1 (= 1.15-1), libxcomposite1 (= 1:0.4.5-1build2), libxcursor1 (= 1:1.2.1-1), libxdamage1 (= 1:1.1.5-2build2), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-2), libxi6 (= 2:1.8-1build1), libxinerama1 (= 2:1.1.4-3), libxml2 (= 2.9.14+dfsg-1.1), libxrandr2 (= 2:1.5.2-2), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxtst6 (= 2:1.2.3-1.1), libxxf86vm1 (= 1:1.1.4-1build3), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openjdk-17-jdk (= 17.0.5+8-2ubuntu1), openjdk-17-jdk-headless (= 17.0.5+8-2ubuntu1), openjdk-17-jre (= 17.0.5+8-2ubuntu1), openjdk-17-jre-headless (= 17.0.5+8-2ubuntu1), openssl (= 3.0.5-2ubuntu2), patch (= 2.7.6-7build2), perl (= 5.36.0-4ubuntu2), perl-base (= 5.36.0-4ubuntu2), perl-modules-5.36 (= 5.36.0-4ubuntu2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), shared-mime-info (= 2.2-1), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), ubuntu-mono (= 20.10-0ubuntu2), ucf (= 3.0043), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xz-utils (= 5.2.9-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu2) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1670260777" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plast_2.3.2+dfsg-10_armhf.deb ----------------------------- new Debian package, version 2.0. size 547848 bytes: control archive=951 bytes. 871 bytes, 20 lines control 509 bytes, 8 lines md5sums Package: plast Version: 2.3.2+dfsg-10 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1243 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libpcre2-8-0 (>= 10.22), libstdc++6 (>= 11) Built-Using: simde (= 0.7.2-6) Section: science Priority: optional Homepage: https://plast.inria.fr/ Description: Parallel Local Sequence Alignment Search Tool PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds- based heuristic comparison methods, such as the Blast suite of algorithms. . Relying on unique software architecture, PLAST takes full advantage of recent multi-core personal computers without requiring any additional hardware devices. drwxr-xr-x root/root 0 2022-12-05 17:19 ./ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/bin/ -rwxr-xr-x root/root 6493 2022-12-05 17:19 ./usr/bin/plast drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/lib/plast/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/lib/plast/bin/ -rwxr-xr-x root/root 1207708 2022-12-05 17:19 ./usr/lib/plast/bin/plast drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/share/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/share/doc/plast/ -rw-r--r-- root/root 134 2022-12-05 17:19 ./usr/share/doc/plast/README.Debian -rw-r--r-- root/root 2650 2017-05-23 13:33 ./usr/share/doc/plast/README.md.gz -rw-r--r-- root/root 332 2022-12-05 17:19 ./usr/share/doc/plast/README.test -rw-r--r-- root/root 1094 2022-12-05 17:19 ./usr/share/doc/plast/changelog.Debian.gz -rw-r--r-- root/root 35399 2022-12-05 17:19 ./usr/share/doc/plast/copyright drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-05 17:19 ./usr/share/man/man1/ -rw-r--r-- root/root 1817 2022-12-05 17:19 ./usr/share/man/man1/plast.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 164284 Build-Time: 428 Distribution: lunar-proposed Host Architecture: armhf Install-Time: 84 Job: plast_2.3.2+dfsg-10.dsc Machine Architecture: arm64 Package: plast Package-Time: 517 Source-Version: 2.3.2+dfsg-10 Space: 164284 Status: successful Version: 2.3.2+dfsg-10 -------------------------------------------------------------------------------- Finished at 2022-12-05T23:41:57Z Build needed 00:08:37, 164284k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-24902673 Scanning for processes to kill in build PACKAGEBUILD-24902673