https://launchpad.net/ubuntu/+source/plastimatch/1.8.0+dfsg.1-2build1/+build/18888332 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-023 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:02:04 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Mar 15:13:46 ntpdate[1923]: adjust time server 10.211.37.1 offset 0.008344 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18888332 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18888332 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18888332 Starting target for build PACKAGEBUILD-18888332 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18888332 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18888332 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18888332 Updating target for build PACKAGEBUILD-18888332 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [974 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8607 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5146 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [55.1 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [25.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [293 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [150 kB] Fetched 16.4 MB in 9s (1864 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp cpp-9 debianutils dpkg dpkg-dev e2fsprogs fdisk findutils g++ g++-9 gcc gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pinentry-curses procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux zlib1g 128 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 73.6 MB of archives. After this operation, 52.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-10-base amd64 10-20200321-1ubuntu1 [18.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-s1 amd64 10-20200321-1ubuntu1 [41.5 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.31-0ubuntu6 [2515 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.31-0ubuntu6 [71.6 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt-dev amd64 1:4.4.10-10ubuntu4 [104 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.4.0-18.22 [1156 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libcrypt1 amd64 1:4.4.10-10ubuntu4 [78.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.31-0ubuntu6 [2715 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.31-0ubuntu6 [633 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu4 [60.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-6ubuntu1 [638 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu8 [63.1 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 tar amd64 1.30+dfsg-7 [240 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 dpkg amd64 1.19.7ubuntu3 [1128 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 findutils amd64 4.7.0-1ubuntu1 [329 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 grep amd64 3.4-1 [151 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8.1-1ubuntu3 [221 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.2-0ubuntu2 [101 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.2-0ubuntu2 [87.0 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.2-0ubuntu2 [173 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.2-0ubuntu2 [132 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9build1 [2737 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9build1 [3943 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9build1 [224 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9build1 [1511 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.6ubuntu2 [675 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu1 [53.7 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu8 [137 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu8 [20.1 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu8 [175 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 libselinux1 amd64 3.0-1build2 [68.8 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu8 [149 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu8 [100 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu8 [120 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu8 [1021 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.251ubuntu1 [6160 B] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-2.1ubuntu1 [20.6 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libgpg-error0 amd64 1.37-1 [58.0 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-5ubuntu1 [419 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 10-20200321-1ubuntu1 [503 kB] Get:51 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd-sysv amd64 245.2-1ubuntu1 [9524 B] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-6 [18.8 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu2 [34.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1build1 [11.1 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu6 [38.9 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.32-1 [15.9 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libudev1 amd64 245.2-1ubuntu1 [77.8 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu1 [127 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-7 [29.2 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu6 [1318 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-3ubuntu2 [182 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [240 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libffi7 amd64 3.3-4 [19.7 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.20-1build1 [188 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.16.0-2 [38.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libip4tc2 amd64 1.8.4-3ubuntu2 [18.8 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 27-1ubuntu2 [44.3 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.3-0ubuntu2 [40.0 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu8 [115 kB] Get:75 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 systemd amd64 245.2-1ubuntu1 [3806 kB] Get:76 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsystemd0 amd64 245.2-1ubuntu1 [270 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-3 [237 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg6.0 amd64 2.0.0 [832 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.10 [852 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.19-3ubuntu2 [200 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 2.0.0 [1285 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 logsave amd64 1.45.5-2ubuntu1 [10.2 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libext2fs2 amd64 1.45.5-2ubuntu1 [183 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 e2fsprogs amd64 1.45.5-2ubuntu1 [527 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:89 http://ftpmaster.internal/ubuntu focal/universe amd64 libgcc1 amd64 1:10-20200321-1ubuntu1 [41.5 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:91 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpcre3 amd64 2:8.39-12build1 [232 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1build2 [9792 B] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1build2 [85.5 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8.1-1ubuntu3 [797 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22.1-1 [592 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 10-20200321-1ubuntu1 [41.1 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 libctf-nobfd0 amd64 2.34-5ubuntu1 [46.9 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 libctf0 amd64 2.34-5ubuntu1 [46.7 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.34-5ubuntu1 [476 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.34-5ubuntu1 [207 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.34-5ubuntu1 [3376 B] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.34-5ubuntu1 [1613 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 10-20200321-1ubuntu1 [101 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 10-20200321-1ubuntu1 [26.3 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 10-20200321-1ubuntu1 [9296 B] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.3.0-7ubuntu1 [395 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 10-20200321-1ubuntu1 [144 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 10-20200321-1ubuntu1 [319 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 10-20200321-1ubuntu1 [136 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 10-20200321-1ubuntu1 [146 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.3.0-7ubuntu1 [8398 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.3.0-7ubuntu1 [1710 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.3.0-7ubuntu1 [8234 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.3.0-7ubuntu1 [2353 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.3.0-7ubuntu1 [7490 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.3.0-7ubuntu1 [19.2 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libcom-err2 amd64 1.45.5-2ubuntu1 [9544 B] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 libprocps8 amd64 2:3.3.16-1ubuntu2 [33.1 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 libss2 amd64 1.45.5-2ubuntu1 [11.3 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 mawk amd64 1.3.4.20200120-2 [96.0 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 procps amd64 2:3.3.16-1ubuntu2 [233 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 readline-common all 8.0-4 [53.5 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 libreadline8 amd64 8.0-4 [131 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.31.1-3 [548 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu6 [620 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 tzdata all 2019c-3ubuntu1 [294 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 libpng16-16 amd64 1.6.37-2 [179 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 advancecomp amd64 2.1-2.1build1 [201 kB] Get:131 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 g++ amd64 4:9.3.0-1ubuntu2 [1604 B] Get:132 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc amd64 4:9.3.0-1ubuntu2 [5208 B] Get:133 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 cpp amd64 4:9.3.0-1ubuntu2 [27.6 kB] Get:134 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 dpkg-dev all 1.19.7ubuntu3 [679 kB] Get:135 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libdpkg-perl all 1.19.7ubuntu3 [230 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:137 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 pinentry-curses amd64 1.1.0-3build1 [36.3 kB] Get:138 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.19-3ubuntu2 [482 kB] Get:139 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.19-3ubuntu2 [124 kB] Get:140 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.19-3ubuntu2 [232 kB] Get:141 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.6 MB in 4s (19.7 MB/s) Selecting previously unselected package gcc-10-base:amd64. (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200321-1ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200321-1ubuntu1) ... Setting up gcc-10-base:amd64 (10-20200321-1ubuntu1) ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... 12747 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200321-1ubuntu1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:amd64 (10-20200321-1ubuntu1) ... (Reading database ... 12749 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.31-0ubuntu6_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Preparing to unpack .../1-libc-dev-bin_2.31-0ubuntu6_amd64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../2-libcrypt-dev_1%3a4.4.10-10ubuntu4_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Preparing to unpack .../3-linux-libc-dev_5.4.0-18.22_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.4.0-18.22) over (5.3.0-18.19) ... Preparing to unpack .../4-libc6_2.31-0ubuntu6_amd64.deb ... Unpacking libc6:amd64 (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../5-libcrypt1_1%3a4.4.10-10ubuntu4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:amd64 (1:4.4.10-10ubuntu4) ... Setting up libc6:amd64 (2.31-0ubuntu6) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu6_amd64.deb ... Unpacking libc-bin (2.31-0ubuntu6) over (2.30-0ubuntu2) ... Setting up libc-bin (2.31-0ubuntu6) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu4_amd64.deb ... Unpacking base-files (11ubuntu4) over (10.2ubuntu7) ... Setting up base-files (11ubuntu4) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Updating /root/.profile to current default. (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../debianutils_4.9.1_amd64.deb ... Unpacking debianutils (4.9.1) over (4.8.6.3) ... Setting up debianutils (4.9.1) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../bash_5.0-6ubuntu1_amd64.deb ... Unpacking bash (5.0-6ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-6ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu8_amd64.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu8) over (1:2.34-0.1ubuntu2) ... Setting up bsdutils (1:2.34-0.1ubuntu8) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-7_amd64.deb ... Unpacking tar (1.30+dfsg-7) over (1.30+dfsg-6) ... Setting up tar (1.30+dfsg-7) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.7ubuntu3_amd64.deb ... Unpacking dpkg (1.19.7ubuntu3) over (1.19.7ubuntu2) ... Setting up dpkg (1.19.7ubuntu3) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../findutils_4.7.0-1ubuntu1_amd64.deb ... Unpacking findutils (4.7.0-1ubuntu1) over (4.6.0+git+20190209-2ubuntu1) ... Setting up findutils (4.7.0-1ubuntu1) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../archives/grep_3.4-1_amd64.deb ... Unpacking grep (3.4-1) over (3.3-1build1) ... Setting up grep (3.4-1) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../gzip_1.10-0ubuntu4_amd64.deb ... Unpacking gzip (1.10-0ubuntu4) over (1.10-0ubuntu3) ... Setting up gzip (1.10-0ubuntu4) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../hostname_3.23_amd64.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12775 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu3_amd64.deb ... Unpacking login (1:4.8.1-1ubuntu3) over (1:4.5-1.1ubuntu4) ... Setting up login (1:4.8.1-1ubuntu3) ... Installing new version of config file /etc/pam.d/login ... Removing obsolete conffile /etc/securetty ... (Reading database ... 12771 files and directories currently installed.) Preparing to unpack .../libncurses6_6.2-0ubuntu2_amd64.deb ... Unpacking libncurses6:amd64 (6.2-0ubuntu2) over (6.1+20190803-1ubuntu1) ... Preparing to unpack .../libtinfo6_6.2-0ubuntu2_amd64.deb ... Unpacking libtinfo6:amd64 (6.2-0ubuntu2) over (6.1+20190803-1ubuntu1) ... Setting up libtinfo6:amd64 (6.2-0ubuntu2) ... (Reading database ... 12771 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2-0ubuntu2_amd64.deb ... Unpacking ncurses-bin (6.2-0ubuntu2) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-bin (6.2-0ubuntu2) ... (Reading database ... 12771 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2-0ubuntu2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2-0ubuntu2) over (6.1+20190803-1ubuntu1) ... Setting up libncursesw6:amd64 (6.2-0ubuntu2) ... (Reading database ... 12771 files and directories currently installed.) Preparing to unpack .../perl_5.30.0-9build1_amd64.deb ... Unpacking perl (5.30.0-9build1) over (5.28.1-6build1) ... Replacing files in old package perl-base (5.28.1-6build1) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../perl-modules-5.30_5.30.0-9build1_all.deb ... Unpacking perl-modules-5.30 (5.30.0-9build1) ... Selecting previously unselected package libperl5.30:amd64. Preparing to unpack .../libperl5.30_5.30.0-9build1_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-9build1_amd64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.28.1-6build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-2_amd64.deb ... Unpacking bzip2 (1.0.8-2) over (1.0.6-9.2) ... Preparing to unpack .../libbz2-1.0_1.0.8-2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-2) over (1.0.6-9.2) ... Setting up libbz2-1.0:amd64 (1.0.8-2) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.6ubuntu2_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.6ubuntu2) over (5.3.28+dfsg1-0.6ubuntu1) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.6ubuntu2) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2ubuntu1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu1) over (1:1.2.11.dfsg-1ubuntu3) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu1) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libblkid1_2.34-0.1ubuntu8_amd64.deb ... Unpacking libblkid1:amd64 (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up libblkid1:amd64 (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu8_amd64.deb ... Unpacking libuuid1:amd64 (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up libuuid1:amd64 (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.34-0.1ubuntu8_amd64.deb ... Unpacking libfdisk1:amd64 (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up libfdisk1:amd64 (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.34-7_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.34-7) over (10.32-5) ... Setting up libpcre2-8-0:amd64 (10.34-7) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libselinux1_3.0-1build2_amd64.deb ... Unpacking libselinux1:amd64 (3.0-1build2) over (2.9-2) ... Setting up libselinux1:amd64 (3.0-1build2) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1ubuntu8_amd64.deb ... Unpacking libmount1:amd64 (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up libmount1:amd64 (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1ubuntu8_amd64.deb ... Unpacking libsmartcols1:amd64 (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up libsmartcols1:amd64 (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../fdisk_2.34-0.1ubuntu8_amd64.deb ... Unpacking fdisk (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up fdisk (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1ubuntu8_amd64.deb ... Unpacking util-linux (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Setting up util-linux (2.34-0.1ubuntu8) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.251ubuntu1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.251ubuntu1) over (0.249ubuntu1) ... Setting up libdebconfclient0:amd64 (0.251ubuntu1) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.47_amd64.deb ... Unpacking base-passwd (3.5.47) over (3.5.46) ... Setting up base-passwd (3.5.47) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2-0ubuntu2_all.deb ... Unpacking ncurses-base (6.2-0ubuntu2) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-base (6.2-0ubuntu2) ... (Reading database ... 14677 files and directories currently installed.) Preparing to unpack .../lsb-base_11.1.0ubuntu2_all.deb ... Unpacking lsb-base (11.1.0ubuntu2) over (11.0.1ubuntu1) ... Setting up lsb-base (11.1.0ubuntu2) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-2.1ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.96-2.1ubuntu1) over (2.95-5ubuntu2) ... Setting up sysvinit-utils (2.96-2.1ubuntu1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.37-1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.37-1) over (1.36-7) ... Setting up libgpg-error0:amd64 (1.37-1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.5-5ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.5-5ubuntu1) over (1.8.4-5ubuntu2) ... Setting up libgcrypt20:amd64 (1.8.5-5ubuntu1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.2-2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.2-2) over (1.9.1-1) ... Setting up liblz4-1:amd64 (1.9.2-2) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libstdc++6_10-20200321-1ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Setting up libstdc++6:amd64 (10-20200321-1ubuntu1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../systemd-sysv_245.2-1ubuntu1_amd64.deb ... Unpacking systemd-sysv (245.2-1ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libacl1_2.2.53-6_amd64.deb ... Unpacking libacl1:amd64 (2.2.53-6) over (2.2.53-4) ... Setting up libacl1:amd64 (2.2.53-6) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.13.3-7ubuntu2_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.3-7ubuntu2) over (2.13.3-5ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-2ubuntu6_all.deb ... Unpacking libaudit-common (1:2.8.5-2ubuntu6) over (1:2.8.5-2ubuntu1) ... Setting up libaudit-common (1:2.8.5-2ubuntu6) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.1build1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.1build1) over (0.7.9-2) ... Setting up libcap-ng0:amd64 (0.7.9-2.1build1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-2ubuntu6_amd64.deb ... Unpacking libaudit1:amd64 (1:2.8.5-2ubuntu6) over (1:2.8.5-2ubuntu1) ... Setting up libaudit1:amd64 (1:2.8.5-2ubuntu6) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.32-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.32-1) over (1:2.25-2) ... Preparing to unpack .../libudev1_245.2-1ubuntu1_amd64.deb ... Unpacking libudev1:amd64 (245.2-1ubuntu1) over (242-7ubuntu3) ... Setting up libudev1:amd64 (245.2-1ubuntu1) ... (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.167-1ubuntu1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.167-1ubuntu1) over (2:1.02.155-2ubuntu6) ... Preparing to unpack .../libjson-c4_0.13.1+dfsg-7_amd64.deb ... Unpacking libjson-c4:amd64 (0.13.1+dfsg-7) over (0.13.1+dfsg-4) ... Preparing to unpack .../libssl1.1_1.1.1d-2ubuntu6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-2ubuntu6) over (1.1.1c-1ubuntu4) ... Preparing to unpack .../libcryptsetup12_2%3a2.2.2-3ubuntu2_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.2.2-3ubuntu2) over (2:2.2.0-3ubuntu1) ... Selecting previously unselected package libnettle7:amd64. Preparing to unpack .../libnettle7_3.5.1+really3.5.1-2_amd64.deb ... Unpacking libnettle7:amd64 (3.5.1+really3.5.1-2) ... Setting up libnettle7:amd64 (3.5.1+really3.5.1-2) ... (Reading database ... 14684 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... Selecting previously unselected package libhogweed5:amd64. (Reading database ... 14684 files and directories currently installed.) Preparing to unpack .../libhogweed5_3.5.1+really3.5.1-2_amd64.deb ... Unpacking libhogweed5:amd64 (3.5.1+really3.5.1-2) ... Setting up libhogweed5:amd64 (3.5.1+really3.5.1-2) ... Selecting previously unselected package libffi7:amd64. (Reading database ... 14687 files and directories currently installed.) Preparing to unpack .../libffi7_3.3-4_amd64.deb ... Unpacking libffi7:amd64 (3.3-4) ... Setting up libffi7:amd64 (3.3-4) ... (Reading database ... 14692 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.20-1build1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.20-1build1) over (0.23.17-2) ... Setting up libp11-kit0:amd64 (0.23.20-1build1) ... (Reading database ... 14692 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.16.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.16.0-2) over (4.14-3) ... Setting up libtasn1-6:amd64 (4.16.0-2) ... (Reading database ... 14692 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.11.1-2ubuntu2_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.11.1-2ubuntu2) over (3.6.9-5ubuntu1) ... Setting up libgnutls30:amd64 (3.6.11.1-2ubuntu2) ... (Reading database ... 14691 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.4-3ubuntu2_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.4-3ubuntu2) over (1.8.3-2ubuntu5) ... Preparing to unpack .../libkmod2_27-1ubuntu2_amd64.deb ... Unpacking libkmod2:amd64 (27-1ubuntu2) over (26-1ubuntu1) ... Preparing to unpack .../libpam0g_1.3.1-5ubuntu4_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam0g:amd64 (1.3.1-5ubuntu4) ... (Reading database ... 14691 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.3-0ubuntu2_amd64.deb ... Unpacking libseccomp2:amd64 (2.4.3-0ubuntu2) over (2.4.1-0ubuntu0.19.10.3) ... Setting up libseccomp2:amd64 (2.4.3-0ubuntu2) ... (Reading database ... 14691 files and directories currently installed.) Preparing to unpack .../mount_2.34-0.1ubuntu8_amd64.deb ... Unpacking mount (2.34-0.1ubuntu8) over (2.34-0.1ubuntu2) ... Preparing to unpack .../systemd_245.2-1ubuntu1_amd64.deb ... Unpacking systemd (245.2-1ubuntu1) over (242-7ubuntu3) ... Preparing to unpack .../libsystemd0_245.2-1ubuntu1_amd64.deb ... Unpacking libsystemd0:amd64 (245.2-1ubuntu1) over (242-7ubuntu3) ... Setting up libsystemd0:amd64 (245.2-1ubuntu1) ... (Reading database ... 14704 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.4+dfsg-3_amd64.deb ... Unpacking libzstd1:amd64 (1.4.4+dfsg-3) over (1.4.3+dfsg-1) ... Setting up libzstd1:amd64 (1.4.4+dfsg-3) ... Selecting previously unselected package libapt-pkg6.0:amd64. (Reading database ... 14704 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.0_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.0.0) ... Setting up libapt-pkg6.0:amd64 (2.0.0) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.90_1.9.10_amd64.deb ... Unpacking libapt-pkg5.90:amd64 (1.9.10) over (1.9.4) ... Setting up libapt-pkg5.90:amd64 (1.9.10) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.19-3ubuntu2_amd64.deb ... Unpacking gpgv (2.2.19-3ubuntu2) over (2.2.12-1ubuntu3) ... Setting up gpgv (2.2.19-3ubuntu2) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2020.02.11.1_all.deb ... Unpacking ubuntu-keyring (2020.02.11.1) over (2018.09.18.1) ... Setting up ubuntu-keyring (2020.02.11.1) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../archives/apt_2.0.0_amd64.deb ... Unpacking apt (2.0.0) over (1.9.4) ... Setting up apt (2.0.0) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu4_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules-bin (1.3.1-5ubuntu4) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu4_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-modules:amd64 (1.3.1-5ubuntu4) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../logsave_1.45.5-2ubuntu1_amd64.deb ... Unpacking logsave (1.45.5-2ubuntu1) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libext2fs2_1.45.5-2ubuntu1_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.5-2ubuntu1) over (1.45.3-4ubuntu2) ... Setting up libext2fs2:amd64 (1.45.5-2ubuntu1) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.5-2ubuntu1_amd64.deb ... Unpacking e2fsprogs (1.45.5-2ubuntu1) over (1.45.3-4ubuntu2) ... Preparing to unpack .../libattr1_1%3a2.4.48-5_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.48-5) over (1:2.4.48-4) ... Setting up libattr1:amd64 (1:2.4.48-5) ... (Reading database ... 14753 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200321-1ubuntu1_amd64.deb ... Unpacking libgcc1 (1:10-20200321-1ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1 (1:10-20200321-1ubuntu1) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu4) over (1.3.1-5ubuntu1) ... Setting up libpam-runtime (1.3.1-5ubuntu4) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-12build1_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-12build1) over (2:8.39-12) ... Setting up libpcre3:amd64 (2:8.39-12build1) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../libsepol1_3.0-1_amd64.deb ... Unpacking libsepol1:amd64 (3.0-1) over (2.9-2) ... Setting up libsepol1:amd64 (3.0-1) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.0-1build2_all.deb ... Unpacking libsemanage-common (3.0-1build2) over (2.9-3) ... Setting up libsemanage-common (3.0-1build2) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.0-1build2_amd64.deb ... Unpacking libsemanage1:amd64 (3.0-1build2) over (2.9-3) ... Setting up libsemanage1:amd64 (3.0-1build2) ... (Reading database ... 14754 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu3_amd64.deb ... Unpacking passwd (1:4.8.1-1ubuntu3) over (1:4.5-1.1ubuntu4) ... Setting up passwd (1:4.8.1-1ubuntu3) ... Installing new version of config file /etc/default/useradd ... Removing obsolete conffile /etc/cron.daily/passwd ... Selecting previously unselected package libisl22:amd64. (Reading database ... 14747 files and directories currently installed.) Preparing to unpack .../00-libisl22_0.22.1-1_amd64.deb ... Unpacking libisl22:amd64 (0.22.1-1) ... Preparing to unpack .../01-libcc1-0_10-20200321-1ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../02-libctf-nobfd0_2.34-5ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.34-5ubuntu1) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../03-libctf0_2.34-5ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.34-5ubuntu1) ... Preparing to unpack .../04-libbinutils_2.34-5ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.34-5ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../05-binutils-common_2.34-5ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.34-5ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../06-binutils_2.34-5ubuntu1_amd64.deb ... Unpacking binutils (2.34-5ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../07-binutils-x86-64-linux-gnu_2.34-5ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.34-5ubuntu1) over (2.33-2ubuntu1) ... Preparing to unpack .../08-libgomp1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../09-libitm1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../10-libatomic1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../11-libasan5_9.3.0-7ubuntu1_amd64.deb ... Unpacking libasan5:amd64 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../12-liblsan0_10-20200321-1ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../13-libtsan0_10-20200321-1ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../14-libubsan1_10-20200321-1ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../15-libquadmath0_10-20200321-1ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../16-g++-9_9.3.0-7ubuntu1_amd64.deb ... Unpacking g++-9 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../17-libstdc++-9-dev_9.3.0-7ubuntu1_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../18-gcc-9_9.3.0-7ubuntu1_amd64.deb ... Unpacking gcc-9 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../19-libgcc-9-dev_9.3.0-7ubuntu1_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../20-cpp-9_9.3.0-7ubuntu1_amd64.deb ... Unpacking cpp-9 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Preparing to unpack .../21-gcc-9-base_9.3.0-7ubuntu1_amd64.deb ... Unpacking gcc-9-base:amd64 (9.3.0-7ubuntu1) over (9.2.1-9ubuntu2) ... Setting up gcc-9-base:amd64 (9.3.0-7ubuntu1) ... (Reading database ... 14749 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.45.5-2ubuntu1_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.5-2ubuntu1) over (1.45.3-4ubuntu2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../01-libprocps8_2%3a3.3.16-1ubuntu2_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-1ubuntu2) ... Preparing to unpack .../02-libss2_1.45.5-2ubuntu1_amd64.deb ... Unpacking libss2:amd64 (1.45.5-2ubuntu1) over (1.45.3-4ubuntu2) ... Preparing to unpack .../03-mawk_1.3.4.20200120-2_amd64.deb ... Unpacking mawk (1.3.4.20200120-2) over (1.3.3-17ubuntu3) ... Preparing to unpack .../04-procps_2%3a3.3.16-1ubuntu2_amd64.deb ... Unpacking procps (2:3.3.16-1ubuntu2) over (2:3.3.15-2ubuntu3) ... Preparing to unpack .../05-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) over (0.0.12) ... Preparing to unpack .../06-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) over (8.0-3) ... Preparing to unpack .../07-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) over (8.0-3) ... Preparing to unpack .../08-libsqlite3-0_3.31.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-3) over (3.29.0-2) ... Preparing to unpack .../09-openssl_1.1.1d-2ubuntu6_amd64.deb ... Unpacking openssl (1.1.1d-2ubuntu6) over (1.1.1c-1ubuntu4) ... Preparing to unpack .../10-tzdata_2019c-3ubuntu1_all.deb ... Unpacking tzdata (2019c-3ubuntu1) over (2019c-3) ... Preparing to unpack .../11-libpng16-16_1.6.37-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-2) over (1.6.37-1) ... Preparing to unpack .../12-advancecomp_2.1-2.1build1_amd64.deb ... Unpacking advancecomp (2.1-2.1build1) over (2.1-2.1) ... Preparing to unpack .../13-g++_4%3a9.3.0-1ubuntu2_amd64.deb ... Unpacking g++ (4:9.3.0-1ubuntu2) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../14-gcc_4%3a9.3.0-1ubuntu2_amd64.deb ... Unpacking gcc (4:9.3.0-1ubuntu2) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../15-cpp_4%3a9.3.0-1ubuntu2_amd64.deb ... Unpacking cpp (4:9.3.0-1ubuntu2) over (4:9.2.1-3.1ubuntu1) ... Preparing to unpack .../16-dpkg-dev_1.19.7ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.7ubuntu3) over (1.19.7ubuntu2) ... Preparing to unpack .../17-libdpkg-perl_1.19.7ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.7ubuntu3) over (1.19.7ubuntu2) ... Preparing to unpack .../18-libassuan0_2.5.3-7ubuntu2_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7ubuntu2) over (2.5.3-7ubuntu1) ... Preparing to unpack .../19-pinentry-curses_1.1.0-3build1_amd64.deb ... Unpacking pinentry-curses (1.1.0-3build1) over (1.1.0-3) ... Preparing to unpack .../20-gpg_2.2.19-3ubuntu2_amd64.deb ... Unpacking gpg (2.2.19-3ubuntu2) over (2.2.12-1ubuntu3) ... Preparing to unpack .../21-gpgconf_2.2.19-3ubuntu2_amd64.deb ... Unpacking gpgconf (2.2.19-3ubuntu2) over (2.2.12-1ubuntu3) ... Preparing to unpack .../22-gpg-agent_2.2.19-3ubuntu2_amd64.deb ... Unpacking gpg-agent (2.2.19-3ubuntu2) over (2.2.12-1ubuntu3) ... Preparing to unpack .../23-liblockfile-bin_1.16-1.1_amd64.deb ... Unpacking liblockfile-bin (1.16-1.1) over (1.15-1) ... Preparing to unpack .../24-liblockfile1_1.16-1.1_amd64.deb ... Unpacking liblockfile1:amd64 (1.16-1.1) over (1.15-1) ... Setting up libip4tc2:amd64 (1.8.4-3ubuntu2) ... Setting up libapparmor1:amd64 (2.13.3-7ubuntu2) ... Setting up liblockfile-bin (1.16-1.1) ... Setting up perl-modules-5.30 (5.30.0-9build1) ... Setting up libssl1.1:amd64 (1.1.1d-2ubuntu6) ... Setting up libsqlite3-0:amd64 (3.31.1-3) ... Setting up binutils-common:amd64 (2.34-5ubuntu1) ... Setting up linux-libc-dev:amd64 (5.4.0-18.22) ... Setting up libctf-nobfd0:amd64 (2.34-5ubuntu1) ... Setting up libcom-err2:amd64 (1.45.5-2ubuntu1) ... Setting up libassuan0:amd64 (2.5.3-7ubuntu2) ... Setting up libgomp1:amd64 (10-20200321-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:amd64 (1:2.32-1) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Mar 24 15:15:44 UTC 2020. Universal Time is now: Tue Mar 24 15:15:44 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:amd64 (9.3.0-7ubuntu1) ... Setting up libncurses6:amd64 (6.2-0ubuntu2) ... Setting up libquadmath0:amd64 (10-20200321-1ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libatomic1:amd64 (10-20200321-1ubuntu1) ... Setting up libss2:amd64 (1.45.5-2ubuntu1) ... Setting up logsave (1.45.5-2ubuntu1) ... Setting up libubsan1:amd64 (10-20200321-1ubuntu1) ... Setting up advancecomp (2.1-2.1build1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.167-1ubuntu1) ... Setting up mount (2.34-0.1ubuntu8) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.10-10ubuntu4) ... Setting up libperl5.30:amd64 (5.30.0-9build1) ... Setting up libisl22:amd64 (0.22.1-1) ... Setting up mawk (1.3.4.20200120-2) ... Setting up liblockfile1:amd64 (1.16-1.1) ... Setting up libjson-c4:amd64 (0.13.1+dfsg-7) ... Setting up libbinutils:amd64 (2.34-5ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu6) ... Setting up openssl (1.1.1d-2ubuntu6) ... Setting up readline-common (8.0-4) ... Setting up libcc1-0:amd64 (10-20200321-1ubuntu1) ... Setting up liblsan0:amd64 (10-20200321-1ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.16-1ubuntu2) ... Setting up libitm1:amd64 (10-20200321-1ubuntu1) ... Setting up libkmod2:amd64 (27-1ubuntu2) ... Setting up libtsan0:amd64 (10-20200321-1ubuntu1) ... Setting up libctf0:amd64 (2.34-5ubuntu1) ... Setting up pinentry-curses (1.1.0-3build1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up libgcc-9-dev:amd64 (9.3.0-7ubuntu1) ... Setting up perl (5.30.0-9build1) ... Setting up libdpkg-perl (1.19.7ubuntu3) ... Setting up procps (2:3.3.16-1ubuntu2) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up gpgconf (2.2.19-3ubuntu2) ... Setting up cpp-9 (9.3.0-7ubuntu1) ... Setting up libc6-dev:amd64 (2.31-0ubuntu6) ... Setting up libcryptsetup12:amd64 (2:2.2.2-3ubuntu2) ... Setting up gpg (2.2.19-3ubuntu2) ... Setting up binutils-x86-64-linux-gnu (2.34-5ubuntu1) ... Setting up gpg-agent (2.2.19-3ubuntu2) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libstdc++-9-dev:amd64 (9.3.0-7ubuntu1) ... Setting up systemd (245.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.34-5ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu3) ... Setting up cpp (4:9.3.0-1ubuntu2) ... Setting up gcc-9 (9.3.0-7ubuntu1) ... Setting up systemd-sysv (245.2-1ubuntu1) ... Setting up gcc (4:9.3.0-1ubuntu2) ... Setting up g++-9 (9.3.0-7ubuntu1) ... Setting up g++ (4:9.3.0-1ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18888332 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18888332 --arch=amd64 --dist=focal-proposed --nolog -A plastimatch_1.8.0+dfsg.1-2build1.dsc Initiating build PACKAGEBUILD-18888332 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:02:04 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-023.buildd +==============================================================================+ | plastimatch 1.8.0+dfsg.1-2build1 (amd64) 24 Mar 2020 15:15 | +==============================================================================+ Package: plastimatch Version: 1.8.0+dfsg.1-2build1 Source Version: 1.8.0+dfsg.1-2build1 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/plastimatch-BcWNwt/plastimatch-1.8.0+dfsg.1' with '<>' I: NOTICE: Log filtering will replace 'build/plastimatch-BcWNwt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18888332/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- plastimatch_1.8.0+dfsg.1-2build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-DySzvO/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-DySzvO/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DySzvO/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-DySzvO/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DySzvO/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-DySzvO/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (53.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-DySzvO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (19.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14763 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), cmake, libblas-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit4-dev, liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 12), cmake, libblas-dev, libdcmtk-dev, libdlib-dev, libfftw3-dev, libgdcm-dev, libinsighttoolkit4-dev, liblapack-dev, libpng-dev, libsqlite3-dev, libtiff-dev, uuid-dev, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-plastimatch-dummy' in '/<>/resolver-BhuapS/apt_archive/sbuild-build-depends-plastimatch-dummy.deb'. Ign:1 copy:/<>/resolver-BhuapS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BhuapS/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BhuapS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BhuapS/apt_archive ./ Sources [290 B] Get:5 copy:/<>/resolver-BhuapS/apt_archive ./ Packages [607 B] Fetched 3016 B in 0s (51.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install plastimatch build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libcharls-dev libcharls2 libcroco3 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdcmtk-dev libdcmtk14 libdebhelper-perl libdlib-data libdlib-dev libdlib19 libdouble-conversion-dev libdouble-conversion3 libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm-dev libgdcm3.0 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu-dev libicu66 libinsighttoolkit4-dev libinsighttoolkit4.13 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libminc-dev libminc2-5.2.0 libnetcdf-dev libnetcdf15 libnghttp2-14 libnifti-dev libnifti2 libopenjp2-7 libpipeline1 libpng-dev libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsocket++1 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsz2 libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libwrap0 libwrap0-dev libxml2 libxml2-dev m4 man-db po-debconf uuid-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip liblapack-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config dcmtk-doc libfftw3-doc krb5-doc krb5-user libhdf5-doc icu-doc insighttoolkit4-examples liblzma-doc netcdf-bin netcdf-doc sqlite3-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales pkg-config libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libcharls-dev libcharls2 libcroco3 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdcmtk-dev libdcmtk14 libdebhelper-perl libdlib-data libdlib-dev libdlib19 libdouble-conversion-dev libdouble-conversion3 libelf1 libexpat1 libexpat1-dev libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgdcm-dev libgdcm3.0 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu-dev libicu66 libinsighttoolkit4-dev libinsighttoolkit4.13 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libminc-dev libminc2-5.2.0 libnetcdf-dev libnetcdf15 libnghttp2-14 libnifti-dev libnifti2 libopenjp2-7 libpipeline1 libpng-dev libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsocket++1 libsqlite3-dev libssh-4 libssl-dev libsub-override-perl libsz2 libtiff-dev libtiff5 libtiffxx5 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libwrap0 libwrap0-dev libxml2 libxml2-dev m4 man-db po-debconf sbuild-build-depends-plastimatch-dummy uuid-dev zlib1g-dev 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 142 MB of archives. After this operation, 482 MB of additional disk space will be used. Get:1 copy:/<>/resolver-BhuapS/apt_archive ./ sbuild-build-depends-plastimatch-dummy 0.invalid.0 [936 B] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libuchardet0 amd64 0.0.6-3build1 [65.2 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 groff-base amd64 1.22.4-4build1 [847 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libpipeline1 amd64 1.5.2-2build1 [27.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 man-db amd64 2.9.1-1 [1112 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic1 amd64 1:5.38-4 [75.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.38-4 [23.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1 amd64 2.2.9-1build1 [73.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libglib2.0-0 amd64 2.64.1-1 [1284 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 libicu66 amd64 66.1-2ubuntu2 [8520 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libxml2 amd64 2.9.10+dfsg-4build1 [640 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5support0 amd64 1.17-6ubuntu4 [30.9 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 libk5crypto3 amd64 1.17-6ubuntu4 [80.2 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libkeyutils1 amd64 1.6-6ubuntu1 [10.2 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-3 amd64 1.17-6ubuntu4 [330 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi-krb5-2 amd64 1.17-6ubuntu4 [121 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 autoconf all 2.69-11.1 [321 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive13 amd64 3.4.0-1ubuntu2 [327 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libbrotli1 amd64 1.0.7-6build1 [270 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-1 [41.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-1 [181 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-1 [29.7 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-1 [87.8 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-1 [47.9 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-1 [107 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-1 [207 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-1 [15.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-1 [96.6 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [14.9 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [49.3 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-2ubuntu1 [156 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libnghttp2-14 amd64 1.40.0-1build1 [78.7 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.3-2ubuntu1 [170 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4 amd64 7.68.0-1ubuntu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libuv1 amd64 1.34.2-1ubuntu1 [80.4 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-13 [161 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-5 [151 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:62 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.9ubuntu1 [869 kB] Get:66 http://ftpmaster.internal/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11 [14.0 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 icu-devtools amd64 66.1-2ubuntu2 [188 kB] Get:68 http://ftpmaster.internal/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libblas3 amd64 3.9.0-1build1 [142 kB] Get:70 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libblas-dev amd64 3.9.0-1build1 [147 kB] Get:71 http://ftpmaster.internal/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] Get:72 http://ftpmaster.internal/ubuntu focal/universe amd64 libcharls-dev amd64 2.0.0+dfsg-1build1 [6568 B] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl3-gnutls amd64 7.68.0-1ubuntu1 [230 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4-gnutls-dev amd64 7.68.0-1ubuntu1 [318 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libicu-dev amd64 66.1-2ubuntu2 [9450 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libxml2-dev amd64 2.9.10+dfsg-4build1 [736 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libssl-dev amd64 1.1.1d-2ubuntu6 [1582 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu1 [156 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 libpng-dev amd64 1.6.37-2 [175 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libwrap0 amd64 7.6.q-30 [46.3 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libwrap0-dev amd64 7.6.q-30 [21.7 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libjbig-dev amd64 2.1-3.1build1 [25.2 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu1 [238 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 liblzma-dev amd64 5.2.4-1 [145 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libtiff5 amd64 4.1.0+git191117-2build1 [161 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libtiffxx5 amd64 4.1.0+git191117-2build1 [5944 B] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libtiff-dev amd64 4.1.0+git191117-2build1 [284 kB] Get:94 http://ftpmaster.internal/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] Get:95 http://ftpmaster.internal/ubuntu focal/universe amd64 libdcmtk-dev amd64 3.6.4-2.1build2 [941 kB] Get:96 http://ftpmaster.internal/ubuntu focal/universe amd64 libdlib-data all 19.10-3build1 [63.4 MB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 libgfortran5 amd64 10-20200321-1ubuntu1 [728 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 liblapack3 amd64 3.9.0-1build1 [2154 kB] Get:99 http://ftpmaster.internal/ubuntu focal/universe amd64 libdlib19 amd64 19.10-3build1 [3773 kB] Get:100 http://ftpmaster.internal/ubuntu focal/universe amd64 libdlib-dev amd64 19.10-3build1 [1719 kB] Get:101 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libdouble-conversion3 amd64 3.1.5-5build1 [37.6 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1-dev amd64 2.2.9-1build1 [116 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-double3 amd64 3.3.8-2ubuntu1 [728 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4 [141 kB] Get:110 http://ftpmaster.internal/ubuntu focal/universe amd64 libsocket++1 amd64 1.12.13-10build1 [40.7 kB] Get:111 http://ftpmaster.internal/ubuntu focal/universe amd64 libgdcm3.0 amd64 3.0.4-2ubuntu1 [1880 kB] Get:112 http://ftpmaster.internal/ubuntu focal/universe amd64 libgdcm-dev amd64 3.0.4-2ubuntu1 [258 kB] Get:113 http://ftpmaster.internal/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] Get:114 http://ftpmaster.internal/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11 [1311 kB] Get:115 http://ftpmaster.internal/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11 [120 kB] Get:116 http://ftpmaster.internal/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] Get:117 http://ftpmaster.internal/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11 [2590 kB] Get:118 http://ftpmaster.internal/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] Get:119 http://ftpmaster.internal/ubuntu focal/universe amd64 libminc2-5.2.0 amd64 2.4.03-2build3 [209 kB] Get:120 http://ftpmaster.internal/ubuntu focal/universe amd64 libnifti2 amd64 2.0.0-3 [102 kB] Get:121 http://ftpmaster.internal/ubuntu focal/universe amd64 libinsighttoolkit4.13 amd64 4.13.2-dfsg1-8 [4426 kB] Get:122 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 libdouble-conversion-dev amd64 3.1.5-5build1 [53.8 kB] Get:123 http://ftpmaster.internal/ubuntu focal/universe amd64 libnifti-dev amd64 2.0.0-3 [130 kB] Get:124 http://ftpmaster.internal/ubuntu focal/universe amd64 libnetcdf-dev amd64 1:4.7.3-1 [45.7 kB] Get:125 http://ftpmaster.internal/ubuntu focal/universe amd64 libminc-dev amd64 2.4.03-2build3 [54.8 kB] Get:126 http://ftpmaster.internal/ubuntu focal/universe amd64 libinsighttoolkit4-dev amd64 4.13.2-dfsg1-8 [2998 kB] Get:127 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 liblapack-dev amd64 3.9.0-1build1 [4242 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-dev amd64 3.31.1-3 [696 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 uuid-dev amd64 2.34-0.1ubuntu8 [33.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 142 MB in 6s (23.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14763 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4build1_amd64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2build1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../009-libelf1_0.176-1.1build1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1build1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../010-libexpat1_2.2.9-1build1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1build1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../011-libglib2.0-0_2.64.1-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.64.1-1) ... Selecting previously unselected package libicu66:amd64. Preparing to unpack .../012-libicu66_66.1-2ubuntu2_amd64.deb ... Unpacking libicu66:amd64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../013-libxml2_2.9.10+dfsg-4build1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-4build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-10build1_amd64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../015-libkrb5support0_1.17-6ubuntu4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-6ubuntu4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../016-libk5crypto3_1.17-6ubuntu4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6ubuntu4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../017-libkeyutils1_1.6-6ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6ubuntu1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../018-libkrb5-3_1.17-6ubuntu4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6ubuntu4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../019-libgssapi-krb5-2_1.17-6ubuntu4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6ubuntu4) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../020-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../021-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../022-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../023-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../024-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../025-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../026-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../027-cmake-data_3.16.3-1ubuntu1_all.deb ... Unpacking cmake-data (3.16.3-1ubuntu1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../028-libarchive13_3.4.0-1ubuntu2_amd64.deb ... Unpacking libarchive13:amd64 (3.4.0-1ubuntu2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../029-libbrotli1_1.0.7-6build1_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.7-6build1) ... Selecting previously unselected package libroken18-heimdal:amd64. Preparing to unpack .../030-libroken18-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libroken18-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libasn1-8-heimdal:amd64. Preparing to unpack .../031-libasn1-8-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libheimbase1-heimdal:amd64. Preparing to unpack .../032-libheimbase1-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libhcrypto4-heimdal:amd64. Preparing to unpack .../033-libhcrypto4-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libwind0-heimdal:amd64. Preparing to unpack .../034-libwind0-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libhx509-5-heimdal:amd64. Preparing to unpack .../035-libhx509-5-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libkrb5-26-heimdal:amd64. Preparing to unpack .../036-libkrb5-26-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libheimntlm0-heimdal:amd64. Preparing to unpack .../037-libheimntlm0-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libgssapi3-heimdal:amd64. Preparing to unpack .../038-libgssapi3-heimdal_7.7.0+dfsg-1_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../039-libsasl2-modules-db_2.1.27+dfsg-2_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../040-libsasl2-2_2.1.27+dfsg-2_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../041-libldap-common_2.4.49+dfsg-2ubuntu1_all.deb ... Unpacking libldap-common (2.4.49+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../042-libldap-2.4-2_2.4.49+dfsg-2ubuntu1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.49+dfsg-2ubuntu1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../043-libnghttp2-14_1.40.0-1build1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.40.0-1build1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../044-librtmp1_2.4+20151223.gitfa8646d.1-2build1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../045-libssh-4_0.9.3-2ubuntu1_amd64.deb ... Unpacking libssh-4:amd64 (0.9.3-2ubuntu1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../046-libcurl4_7.68.0-1ubuntu1_amd64.deb ... Unpacking libcurl4:amd64 (7.68.0-1ubuntu1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../047-libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../048-librhash0_1.3.9-1_amd64.deb ... Unpacking librhash0:amd64 (1.3.9-1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../049-libuv1_1.34.2-1ubuntu1_amd64.deb ... Unpacking libuv1:amd64 (1.34.2-1ubuntu1) ... Selecting previously unselected package cmake. Preparing to unpack .../050-cmake_3.16.3-1ubuntu1_amd64.deb ... Unpacking cmake (3.16.3-1ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../051-libtool_2.4.6-13_all.deb ... Unpacking libtool (2.4.6-13) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../052-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../053-libdebhelper-perl_12.9ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.9ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../054-libarchive-zip-perl_1.67-2_all.deb ... Unpacking libarchive-zip-perl (1.67-2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../055-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../056-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../057-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package dwz. Preparing to unpack .../058-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../059-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../060-gettext_0.19.8.1-10build1_amd64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../061-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../062-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../063-debhelper_12.9ubuntu1_all.deb ... Unpacking debhelper (12.9ubuntu1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../064-hdf5-helpers_1.10.4+repack-11_amd64.deb ... Unpacking hdf5-helpers (1.10.4+repack-11) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../065-icu-devtools_66.1-2ubuntu2_amd64.deb ... Unpacking icu-devtools (66.1-2ubuntu2) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../066-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../067-libblas3_3.9.0-1build1_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-1build1) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../068-libblas-dev_3.9.0-1build1_amd64.deb ... Unpacking libblas-dev:amd64 (3.9.0-1build1) ... Selecting previously unselected package libcharls2:amd64. Preparing to unpack .../069-libcharls2_2.0.0+dfsg-1build1_amd64.deb ... Unpacking libcharls2:amd64 (2.0.0+dfsg-1build1) ... Selecting previously unselected package libcharls-dev:amd64. Preparing to unpack .../070-libcharls-dev_2.0.0+dfsg-1build1_amd64.deb ... Unpacking libcharls-dev:amd64 (2.0.0+dfsg-1build1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../071-libcurl3-gnutls_7.68.0-1ubuntu1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.68.0-1ubuntu1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../072-libcurl4-gnutls-dev_7.68.0-1ubuntu1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.68.0-1ubuntu1) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../073-libicu-dev_66.1-2ubuntu2_amd64.deb ... Unpacking libicu-dev:amd64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../074-libxml2-dev_2.9.10+dfsg-4build1_amd64.deb ... Unpacking libxml2-dev:amd64 (2.9.10+dfsg-4build1) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../075-libssl-dev_1.1.1d-2ubuntu6_amd64.deb ... Unpacking libssl-dev:amd64 (1.1.1d-2ubuntu6) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../076-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../077-libpng-dev_1.6.37-2_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.37-2) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../078-libwrap0_7.6.q-30_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-30) ... Selecting previously unselected package libwrap0-dev:amd64. Preparing to unpack .../079-libwrap0-dev_7.6.q-30_amd64.deb ... Unpacking libwrap0-dev:amd64 (7.6.q-30) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../080-libjbig0_2.1-3.1build1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1build1) ... Selecting previously unselected package libjbig-dev:amd64. Preparing to unpack .../081-libjbig-dev_2.1-3.1build1_amd64.deb ... Unpacking libjbig-dev:amd64 (2.1-3.1build1) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../082-libjpeg-turbo8_2.0.3-0ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg-turbo8-dev:amd64. Preparing to unpack .../083-libjpeg-turbo8-dev_2.0.3-0ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8-dev:amd64 (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../084-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg8-dev:amd64. Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:amd64. Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg-dev:amd64 (8c-2ubuntu8) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../087-liblzma-dev_5.2.4-1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.4-1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../088-libwebp6_0.6.1-2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../089-libtiff5_4.1.0+git191117-2build1_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2build1) ... Selecting previously unselected package libtiffxx5:amd64. Preparing to unpack .../090-libtiffxx5_4.1.0+git191117-2build1_amd64.deb ... Unpacking libtiffxx5:amd64 (4.1.0+git191117-2build1) ... Selecting previously unselected package libtiff-dev:amd64. Preparing to unpack .../091-libtiff-dev_4.1.0+git191117-2build1_amd64.deb ... Unpacking libtiff-dev:amd64 (4.1.0+git191117-2build1) ... Selecting previously unselected package libdcmtk14. Preparing to unpack .../092-libdcmtk14_3.6.4-2.1build2_amd64.deb ... Unpacking libdcmtk14 (3.6.4-2.1build2) ... Selecting previously unselected package libdcmtk-dev. Preparing to unpack .../093-libdcmtk-dev_3.6.4-2.1build2_amd64.deb ... Unpacking libdcmtk-dev (3.6.4-2.1build2) ... Selecting previously unselected package libdlib-data. Preparing to unpack .../094-libdlib-data_19.10-3build1_all.deb ... Unpacking libdlib-data (19.10-3build1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../095-libgfortran5_10-20200321-1ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (10-20200321-1ubuntu1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../096-liblapack3_3.9.0-1build1_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-1build1) ... Selecting previously unselected package libdlib19:amd64. Preparing to unpack .../097-libdlib19_19.10-3build1_amd64.deb ... Unpacking libdlib19:amd64 (19.10-3build1) ... Selecting previously unselected package libdlib-dev:amd64. Preparing to unpack .../098-libdlib-dev_19.10-3build1_amd64.deb ... Unpacking libdlib-dev:amd64 (19.10-3build1) ... Selecting previously unselected package libdouble-conversion3:amd64. Preparing to unpack .../099-libdouble-conversion3_3.1.5-5build1_amd64.deb ... Unpacking libdouble-conversion3:amd64 (3.1.5-5build1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../100-libexpat1-dev_2.2.9-1build1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.9-1build1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../101-libfftw3-double3_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.8-2ubuntu1) ... Selecting previously unselected package libfftw3-long3:amd64. Preparing to unpack .../102-libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... Selecting previously unselected package libfftw3-quad3:amd64. Preparing to unpack .../103-libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../104-libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../105-libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... Selecting previously unselected package libfftw3-dev:amd64. Preparing to unpack .../106-libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../107-libopenjp2-7_2.3.1-1ubuntu4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4) ... Selecting previously unselected package libsocket++1:amd64. Preparing to unpack .../108-libsocket++1_1.12.13-10build1_amd64.deb ... Unpacking libsocket++1:amd64 (1.12.13-10build1) ... Selecting previously unselected package libgdcm3.0:amd64. Preparing to unpack .../109-libgdcm3.0_3.0.4-2ubuntu1_amd64.deb ... Unpacking libgdcm3.0:amd64 (3.0.4-2ubuntu1) ... Selecting previously unselected package libgdcm-dev. Preparing to unpack .../110-libgdcm-dev_3.0.4-2ubuntu1_amd64.deb ... Unpacking libgdcm-dev (3.0.4-2ubuntu1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../111-libsz2_1.0.4-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.4-1) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../112-libhdf5-103_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-11) ... Selecting previously unselected package libhdf5-cpp-103:amd64. Preparing to unpack .../113-libhdf5-cpp-103_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../114-libaec-dev_1.0.4-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.0.4-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../115-libhdf5-dev_1.10.4+repack-11_amd64.deb ... Unpacking libhdf5-dev (1.10.4+repack-11) ... Selecting previously unselected package libnetcdf15:amd64. Preparing to unpack .../116-libnetcdf15_1%3a4.7.3-1_amd64.deb ... Unpacking libnetcdf15:amd64 (1:4.7.3-1) ... Selecting previously unselected package libminc2-5.2.0:amd64. Preparing to unpack .../117-libminc2-5.2.0_2.4.03-2build3_amd64.deb ... Unpacking libminc2-5.2.0:amd64 (2.4.03-2build3) ... Selecting previously unselected package libnifti2. Preparing to unpack .../118-libnifti2_2.0.0-3_amd64.deb ... Unpacking libnifti2 (2.0.0-3) ... Selecting previously unselected package libinsighttoolkit4.13. Preparing to unpack .../119-libinsighttoolkit4.13_4.13.2-dfsg1-8_amd64.deb ... Unpacking libinsighttoolkit4.13 (4.13.2-dfsg1-8) ... Selecting previously unselected package libdouble-conversion-dev:amd64. Preparing to unpack .../120-libdouble-conversion-dev_3.1.5-5build1_amd64.deb ... Unpacking libdouble-conversion-dev:amd64 (3.1.5-5build1) ... Selecting previously unselected package libnifti-dev. Preparing to unpack .../121-libnifti-dev_2.0.0-3_amd64.deb ... Unpacking libnifti-dev (2.0.0-3) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../122-libnetcdf-dev_1%3a4.7.3-1_amd64.deb ... Unpacking libnetcdf-dev (1:4.7.3-1) ... Selecting previously unselected package libminc-dev. Preparing to unpack .../123-libminc-dev_2.4.03-2build3_amd64.deb ... Unpacking libminc-dev (2.4.03-2build3) ... Selecting previously unselected package libinsighttoolkit4-dev. Preparing to unpack .../124-libinsighttoolkit4-dev_4.13.2-dfsg1-8_amd64.deb ... Unpacking libinsighttoolkit4-dev (4.13.2-dfsg1-8) ... Selecting previously unselected package liblapack-dev:amd64. Preparing to unpack .../125-liblapack-dev_3.9.0-1build1_amd64.deb ... Unpacking liblapack-dev:amd64 (3.9.0-1build1) ... Selecting previously unselected package libsqlite3-dev:amd64. Preparing to unpack .../126-libsqlite3-dev_3.31.1-3_amd64.deb ... Unpacking libsqlite3-dev:amd64 (3.31.1-3) ... Selecting previously unselected package uuid-dev:amd64. Preparing to unpack .../127-uuid-dev_2.34-0.1ubuntu8_amd64.deb ... Unpacking uuid-dev:amd64 (2.34-0.1ubuntu8) ... Selecting previously unselected package sbuild-build-depends-plastimatch-dummy. Preparing to unpack .../128-sbuild-build-depends-plastimatch-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-plastimatch-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.9-1build1) ... Setting up libpipeline1:amd64 (1.5.2-2build1) ... Setting up libdouble-conversion3:amd64 (3.1.5-5build1) ... Setting up libkeyutils1:amd64 (1.6-6ubuntu1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... Setting up hdf5-helpers (1.10.4+repack-11) ... Setting up libnifti2 (2.0.0-3) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libcharls2:amd64 (2.0.0+dfsg-1build1) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:amd64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libicu66:amd64 (66.1-2ubuntu2) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libbrotli1:amd64 (1.0.7-6build1) ... Setting up libnghttp2-14:amd64 (1.40.0-1build1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-2ubuntu1) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libkrb5support0:amd64 (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:amd64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.34.2-1ubuntu1) ... Setting up libexpat1-dev:amd64 (2.2.9-1build1) ... Setting up libsqlite3-dev:amd64 (3.31.1-3) ... Setting up libwrap0:amd64 (7.6.q-30) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up uuid-dev:amd64 (2.34-0.1ubuntu8) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... Setting up libssl-dev:amd64 (1.1.1d-2ubuntu6) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up icu-devtools (66.1-2ubuntu2) ... Setting up libsocket++1:amd64 (1.12.13-10build1) ... Setting up libk5crypto3:amd64 (1.17-6ubuntu4) ... Setting up libjpeg-turbo8:amd64 (2.0.3-0ubuntu1) ... Setting up libfftw3-double3:amd64 (3.3.8-2ubuntu1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libgfortran5:amd64 (10-20200321-1ubuntu1) ... Setting up libdouble-conversion-dev:amd64 (3.1.5-5build1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up liblzma-dev:amd64 (5.2.4-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libwrap0-dev:amd64 (7.6.q-30) ... Setting up libuchardet0:amd64 (0.0.6-3build1) ... Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.16.3-1ubuntu1) ... Setting up libkrb5-3:amd64 (1.17-6ubuntu4) ... Setting up libnifti-dev (2.0.0-3) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libicu-dev:amd64 (66.1-2ubuntu2) ... Setting up libxml2:amd64 (2.9.10+dfsg-4build1) ... Setting up libdlib-data (19.10-3build1) ... Setting up libblas-dev:amd64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libcharls-dev:amd64 (2.0.0+dfsg-1build1) ... Setting up libjpeg-turbo8-dev:amd64 (2.0.3-0ubuntu1) ... Setting up liblapack3:amd64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-13) ... Setting up libarchive13:amd64 (3.4.0-1ubuntu2) ... Setting up libfftw3-bin (3.3.8-2ubuntu1) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libpng-dev:amd64 (1.6.37-2) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libjbig-dev:amd64 (2.1-3.1build1) ... Setting up m4 (1.4.18-4) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-4build1) ... Setting up libdlib19:amd64 (19.10-3build1) ... Setting up libgdcm3.0:amd64 (3.0.4-2ubuntu1) ... Setting up libhdf5-103:amd64 (1.10.4+repack-11) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:amd64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2build1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... Setting up libtiffxx5:amd64 (4.1.0+git191117-2build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgdcm-dev (3.0.4-2ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libdcmtk14 (3.6.4-2.1build2) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libdlib-dev:amd64 (19.10-3build1) ... Setting up libtiff-dev:amd64 (4.1.0+git191117-2build1) ... Setting up libhdf5-dev (1.10.4+repack-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libdcmtk-dev (3.6.4-2.1build2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.68.0-1ubuntu1) ... Setting up libcurl4-gnutls-dev:amd64 (7.68.0-1ubuntu1) ... Setting up libnetcdf15:amd64 (1:4.7.3-1) ... Setting up libnetcdf-dev (1:4.7.3-1) ... Setting up libcurl4:amd64 (7.68.0-1ubuntu1) ... Setting up libminc2-5.2.0:amd64 (2.4.03-2build3) ... Setting up libminc-dev (2.4.03-2build3) ... Setting up cmake (3.16.3-1ubuntu1) ... Setting up libinsighttoolkit4.13 (4.13.2-dfsg1-8) ... Setting up libinsighttoolkit4-dev (4.13.2-dfsg1-8) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-plastimatch-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-176-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-7ubuntu1 gcc-9_9.3.0-7ubuntu1 libc6-dev_2.31-0ubuntu6 libstdc++-9-dev_9.3.0-7ubuntu1 libstdc++6_10-20200321-1ubuntu1 linux-libc-dev_5.4.0-18.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-x86-64-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 cmake_3.16.3-1ubuntu1 cmake-data_3.16.3-1ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-7ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu8 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-7ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200321-1ubuntu1 gcc-9_9.3.0-7ubuntu1 gcc-9-base_9.3.0-7ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hdf5-helpers_1.10.4+repack-11 hostname_3.23 icu-devtools_66.1-2ubuntu2 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libarchive13_3.4.0-1ubuntu2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-7ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200321-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblas-dev_3.9.0-1build1 libblas3_3.9.0-1build1 libblkid1_2.34-0.1ubuntu8 libbrotli1_1.0.7-6build1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu6 libc-dev-bin_2.31-0ubuntu6 libc6_2.31-0ubuntu6 libc6-dev_2.31-0ubuntu6 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200321-1ubuntu1 libcharls-dev_2.0.0+dfsg-1build1 libcharls2_2.0.0+dfsg-1build1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libcurl3-gnutls_7.68.0-1ubuntu1 libcurl4_7.68.0-1ubuntu1 libcurl4-gnutls-dev_7.68.0-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdcmtk-dev_3.6.4-2.1build2 libdcmtk14_3.6.4-2.1build2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdlib-data_19.10-3build1 libdlib-dev_19.10-3build1 libdlib19_19.10-3build1 libdouble-conversion-dev_3.1.5-5build1 libdouble-conversion3_3.1.5-5build1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libexpat1-dev_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu8 libffi6_3.2.1-9 libffi7_3.3-4 libfftw3-bin_3.3.8-2ubuntu1 libfftw3-dev_3.3.8-2ubuntu1 libfftw3-double3_3.3.8-2ubuntu1 libfftw3-long3_3.3.8-2ubuntu1 libfftw3-quad3_3.3.8-2ubuntu1 libfftw3-single3_3.3.8-2ubuntu1 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-7ubuntu1 libgcc-s1_10-20200321-1ubuntu1 libgcc1_1:10-20200321-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgdcm-dev_3.0.4-2ubuntu1 libgdcm3.0_3.0.4-2ubuntu1 libgfortran5_10-20200321-1ubuntu1 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200321-1ubuntu1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1 libhcrypto4-heimdal_7.7.0+dfsg-1 libhdf5-103_1.10.4+repack-11 libhdf5-cpp-103_1.10.4+repack-11 libhdf5-dev_1.10.4+repack-11 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.7.0+dfsg-1 libicu-dev_66.1-2ubuntu2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libinsighttoolkit4-dev_4.13.2-dfsg1-8 libinsighttoolkit4.13_4.13.2-dfsg1-8 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libitm1_10-20200321-1ubuntu1 libjbig-dev_2.1-3.1build1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg-turbo8-dev_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c4_0.13.1+dfsg-7 libjsoncpp1_1.7.4-3.1ubuntu2 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_27-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 liblapack-dev_3.9.0-1build1 liblapack3_3.9.0-1build1 libldap-2.4-2_2.4.49+dfsg-2ubuntu1 libldap-common_2.4.49+dfsg-2ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200321-1ubuntu1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libminc-dev_2.4.03-2build3 libminc2-5.2.0_2.4.03-2build3 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnetcdf-dev_1:4.7.3-1 libnetcdf15_1:4.7.3-1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1build1 libnifti-dev_2.0.0-3 libnifti2_2.0.0-3 libnpth0_1.6-1 libopenjp2-7_2.3.1-1ubuntu4 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng-dev_1.6.37-2 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libpsl5_0.20.2-2 libquadmath0_10-20200321-1ubuntu1 libreadline8_8.0-4 librhash0_1.3.9-1 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-0ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsocket++1_1.12.13-10build1 libsqlite3-0_3.31.1-3 libsqlite3-dev_3.31.1-3 libss2_1.45.5-2ubuntu1 libssh-4_0.9.3-2ubuntu1 libssl-dev_1.1.1d-2ubuntu6 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-7ubuntu1 libstdc++6_10-20200321-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtiff-dev_4.1.0+git191117-2build1 libtiff5_4.1.0+git191117-2build1 libtiffxx5_4.1.0+git191117-2build1 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libtsan0_10-20200321-1ubuntu1 libubsan1_10-20200321-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libuv1_1.34.2-1ubuntu1 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-1 libwrap0_7.6.q-30 libwrap0-dev_7.6.q-30 libxml2_2.9.10+dfsg-4build1 libxml2-dev_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-18.22 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-plastimatch-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.2-1ubuntu1 systemd-sysv_245.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 uuid-dev_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Mar 24 14:27:17 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plastimatch_1.8.0+dfsg.1-2build1.dsc dpkg-source: info: extracting plastimatch in plastimatch-1.8.0+dfsg.1 dpkg-source: info: unpacking plastimatch_1.8.0+dfsg.1.orig.tar.xz dpkg-source: info: unpacking plastimatch_1.8.0+dfsg.1-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore-failing-test.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18888332 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18888332 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18888332 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package plastimatch dpkg-buildpackage: info: source version 1.8.0+dfsg.1-2build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1' dh_auto_configure -- -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE:STRING=RELEASE -DCMAKE_SKIP_RPATH:BOOL=ON -DPLM_CONFIG_DEBIAN_BUILD:BOOL=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING:BOOL=ON .. -- The C compiler identification is GNU 9.3.0 -- The CXX compiler identification is GNU 9.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test DCMTK_HAS_EC_INVALIDVALUE -- Performing Test DCMTK_HAS_EC_INVALIDVALUE - Success -- DCMTK version 3.6.4 found. -- Etags targets added. -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could NOT find Kaze (missing: KAZE_LIBRARY KAZE_INCLUDE_DIR) -- Could NOT find LIBLBFGS (missing: LIBLBFGS_LIBRARY LIBLBFGS_INCLUDE_DIR) -- Could NOT find NLOPT (missing: NLOPT_LIBRARY NLOPT_INCLUDE_DIR) -- Could NOT find OpenCL (missing: OPENCL_LIBRARIES OPENCL_INCLUDE_DIRS) -- Check for compiler OpenMP support... -- OpenMP flags "-fopenmp", OpenMP libraries "" -- SSE2_FLAGS "-msse2 -mfpmath=sse" -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test TR1_SHARED_PTR_USE_MEMORY -- Performing Test TR1_SHARED_PTR_USE_MEMORY - Failed -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) CMake Warning (dev) at /usr/share/cmake-3.16/Modules/FindCUDA.cmake:524 (option): Policy CMP0077 is not set: option() honors normal variables. Run "cmake --help-policy CMP0077" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For compatibility with older versions of CMake, option is clearing the normal variable 'CUDA_ATTACH_VS_BUILD_RULE_TO_CUDA_FILE'. Call Stack (most recent call first): cmake/FindCUDA_wrap.cmake:102 (find_package) CMakeLists.txt:427 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.16/Modules/FindCUDA.cmake:585 (option): Policy CMP0077 is not set: option() honors normal variables. Run "cmake --help-policy CMP0077" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For compatibility with older versions of CMake, option is clearing the normal variable 'CUDA_PROPAGATE_HOST_FLAGS'. Call Stack (most recent call first): cmake/FindCUDA_wrap.cmake:102 (find_package) CMakeLists.txt:427 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- CUDA Not found -- Could NOT find THRUST (missing: THRUST_INCLUDE_DIR) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for wxWidgets - not found. -- Looking for Matlab - not found. -- Looking for Octave - not found. -- Plastimatch version is 1.8.0 -- The imported target "vtkgdcm" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcm.so.3.0.4" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmsharpglue" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcmsharpglue.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmJava" references the file "/usr/lib/x86_64-linux-gnu/jni/libvtkgdcmJava.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPython" references the file "/usr/lib/python/dist-packages/vtkgdcmPython.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "vtkgdcmPythonD" references the file "/usr/lib/x86_64-linux-gnu/libvtkgdcmPythonD.so.3.0.4" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdump" references the file "/usr/bin/gdcmdump" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmdiff" references the file "/usr/bin/gdcmdiff" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmraw" references the file "/usr/bin/gdcmraw" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscanner" references the file "/usr/bin/gdcmscanner" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmanon" references the file "/usr/bin/gdcmanon" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmgendir" references the file "/usr/bin/gdcmgendir" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmimg" references the file "/usr/bin/gdcmimg" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmconv" references the file "/usr/bin/gdcmconv" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmtar" references the file "/usr/bin/gdcmtar" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcminfo" references the file "/usr/bin/gdcminfo" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmscu" references the file "/usr/bin/gdcmscu" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmxml" references the file "/usr/bin/gdcmxml" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpap3" references the file "/usr/bin/gdcmpap3" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- The imported target "gdcmpdf" references the file "/usr/bin/gdcmpdf" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/x86_64-linux-gnu/gdcm-3.0/GDCMTargets.cmake" but not all the files it references. -- ITK_VERSION = 4.13.2 found -- ITK_BASE = /usr -- Looking for Qt4 - not found -- Looking for Qt5 - not found -- Could NOT find LIBYAML (missing: LIBYAML_LIBRARIES LIBYAML_INCLUDE_DIR) -- Machine is 64-bit -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Checking host processor: x86_64 -- Checking target processor: x86_64 -- Checking epsilon: 2.22045E-16 2.22045E-16 2.22045E-16 -- Checking sign of char: char is signed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/plastimatch-1.8.0+dfsg.1 -B/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/devillard /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/specfun /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= Scanning dependencies of target devillard make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target inih make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build Scanning dependencies of target lbfgs make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target specfun make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 1%] Building CXX object libs/devillard/CMakeFiles/devillard.dir/wirth.cpp.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/devillard.dir/wirth.cpp.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/devillard/wirth.cpp [ 1%] Building C object libs/inih-r29/CMakeFiles/inih.dir/ini.c.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/inih.dir/ini.c.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29/ini.c [ 1%] Building C object libs/specfun/CMakeFiles/specfun.dir/mpbdv.c.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/specfun.dir/mpbdv.c.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/specfun/mpbdv.c [ 2%] Building C object libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/lib/lbfgs.c.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cc -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -o CMakeFiles/lbfgs.dir/lib/lbfgs.c.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/lib/lbfgs.c [ 2%] Linking CXX static library ../../libdevillard.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -P CMakeFiles/devillard.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard && /usr/bin/cmake -E cmake_link_script CMakeFiles/devillard.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libdevillard.a CMakeFiles/devillard.dir/wirth.cpp.o /usr/bin/ranlib ../../libdevillard.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 2%] Built target devillard make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= Scanning dependencies of target nkidecompress make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Building CXX object libs/inih-r29/CMakeFiles/inih.dir/INIReader.cpp.o [ 3%] Building CXX object libs/nkidecompress/CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress/nkidecompress.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/inih.dir/INIReader.cpp.o -c /<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29/INIReader.cpp [ 3%] Linking C static library ../../libspecfun.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -P CMakeFiles/specfun.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun && /usr/bin/cmake -E cmake_link_script CMakeFiles/specfun.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libspecfun.a CMakeFiles/specfun.dir/mpbdv.c.o /usr/bin/ranlib ../../libspecfun.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target specfun make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= [ 3%] Linking CXX static library ../../libnkidecompress.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -P CMakeFiles/nkidecompress.dir/cmake_clean_target.cmake Scanning dependencies of target plmsys make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress && /usr/bin/cmake -E cmake_link_script CMakeFiles/nkidecompress.dir/link.txt --verbose=1 [ 3%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dir_list.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dir_list.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/dir_list.cxx /usr/bin/ar qc ../../libnkidecompress.a CMakeFiles/nkidecompress.dir/nkidecompress.cxx.o /usr/bin/ranlib ../../libnkidecompress.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target nkidecompress make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= Scanning dependencies of target plmclp make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Building CXX object src/plastimatch/clp/CMakeFiles/plmclp.dir/plm_clp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -std=gnu++11 -o CMakeFiles/plmclp.dir/plm_clp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp/plm_clp.cxx [ 3%] Linking C static library ../../liblbfgs.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -P CMakeFiles/lbfgs.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 && /usr/bin/cmake -E cmake_link_script CMakeFiles/lbfgs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../liblbfgs.a CMakeFiles/lbfgs.dir/lib/lbfgs.c.o /usr/bin/ranlib ../../liblbfgs.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target lbfgs [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/dlib_threads.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/dlib_threads.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/dlib_threads.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/file_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/file_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/file_util.cxx [ 4%] Linking CXX static library ../../libinih.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -P CMakeFiles/inih.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 && /usr/bin/cmake -E cmake_link_script CMakeFiles/inih.dir/link.txt --verbose=1 /usr/bin/ar qc ../../libinih.a CMakeFiles/inih.dir/ini.c.o CMakeFiles/inih.dir/INIReader.cpp.o /usr/bin/ranlib ../../libinih.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 4%] Built target inih [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/logfile.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/logfile.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/logfile.cxx [ 4%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/option_range.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/option_range.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/option_range.cxx [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/path_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/path_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/path_util.cxx [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_endian.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_endian.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/plm_endian.cxx [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_fwrite.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/plm_fwrite.cxx [ 5%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_sleep.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_sleep.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/plm_sleep.cxx [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/plm_timer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/plm_timer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/plm_timer.cxx [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/print_and_exit.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/print_and_exit.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/print_and_exit.cxx [ 6%] Building CXX object src/plastimatch/sys/CMakeFiles/plmsys.dir/string_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsys.dir/string_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/string_util.cxx [ 7%] Building C object src/plastimatch/sys/CMakeFiles/plmsys.dir/delayload_legacy.c.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cc -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsys_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/gdcm-3.0 -I/usr/include/double-conversion -I/usr/include/ITK-4.13 -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -o CMakeFiles/plmsys.dir/delayload_legacy.c.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys/delayload_legacy.c [ 7%] Linking CXX static library libplmclp.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -P CMakeFiles/plmclp.dir/cmake_clean_target.cmake cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmclp.dir/link.txt --verbose=1 /usr/bin/ar qc libplmclp.a CMakeFiles/plmclp.dir/plm_clp.cxx.o /usr/bin/ranlib libplmclp.a make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 7%] Built target plmclp [ 7%] Linking CXX shared library ../../../libplmsys.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsys.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmsys.so.1.8 -o ../../../libplmsys.so.1.8 CMakeFiles/plmsys.dir/dir_list.cxx.o CMakeFiles/plmsys.dir/dlib_threads.cxx.o CMakeFiles/plmsys.dir/file_util.cxx.o CMakeFiles/plmsys.dir/logfile.cxx.o CMakeFiles/plmsys.dir/option_range.cxx.o CMakeFiles/plmsys.dir/path_util.cxx.o CMakeFiles/plmsys.dir/plm_endian.cxx.o CMakeFiles/plmsys.dir/plm_fwrite.cxx.o CMakeFiles/plmsys.dir/plm_sleep.cxx.o CMakeFiles/plmsys.dir/plm_timer.cxx.o CMakeFiles/plmsys.dir/print_and_exit.cxx.o CMakeFiles/plmsys.dir/string_util.cxx.o CMakeFiles/plmsys.dir/delayload_legacy.c.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -ldl -lpthread -lpthread -lnsl -lpng -lz -ljpeg -lblas -llapack -lsqlite3 cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsys.so.1.8 ../../../libplmsys.so.1.8 ../../../libplmsys.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 7%] Built target plmsys make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= Scanning dependencies of target plmbase make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/astroid_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/astroid_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/astroid_dose.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_header.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_header.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/bspline_header.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/bspline_interpolate.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/aperture.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/aperture.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/aperture.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmbase.dir/bspline_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/bspline_warp.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/bspline_xform.cxx [ 8%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/bspline_xform_legacy.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_extract.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_extract.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/cxt_extract.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/cxt_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/cxt_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/cxt_io.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_probe.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_probe.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dicom_probe.cxx [ 9%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dicom_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dicom_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dicom_util.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_cosines.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_cosines.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/direction_cosines.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/direction_matrices.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/direction_matrices.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/direction_matrices.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/exchkeys.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/exchkeys.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/exchkeys.cxx [ 10%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/float_pair_list.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/float_pair_list.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/float_pair_list.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/gaussian.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/gaussian.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/gaussian.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/hnd_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/hnd_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/hnd_io.cxx [ 11%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/image_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/image_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/image_stats.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/interpolate.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/interpolate.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/interpolate.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_bbox.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_bbox.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_bbox.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_directions.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_directions.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_directions.cxx [ 12%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_accumulate.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_cast.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_cast.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_clone.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_clone.cxx [ 13%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_create.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_create.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_create.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_header_compare.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_char.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_double.cxx [ 14%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_float.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_int32.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_short.cxx [ 15%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_uchar.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_uint32.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_ushort.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_load_vec.cxx [ 16%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_origin.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_origin.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_region.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_region.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_region.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_save.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_save.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_save.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_shift_scale.cxx [ 17%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_image_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_image_stats.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_metadata.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_metadata.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_metadata.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_pointset.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_pointset.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_pointset.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_resample.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_resample.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_resample.cxx [ 18%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_volume_header.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_volume_header.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/itk_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/itk_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/itk_warp.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mc_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/mc_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/mc_dose.cxx [ 19%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/metadata.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/metadata.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/metadata.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/mha_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/mha_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/mha_io.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/nki_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/nki_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/nki_io.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/parameter_parser.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/parameter_parser.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/parameter_parser.cxx [ 20%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_file_format.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_file_format.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_file_format.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_image.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_file_format.cxx: In function ‘Plm_file_format plm_file_format_deduce(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_file_format.cxx:80:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 80 | fgets (line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_convert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_image_convert.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_header.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image_header.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_image_header.cxx [ 21%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_set.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image_set.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_image_set.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_image_type.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_image_type.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_image_type.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/plm_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/plm_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/plm_warp.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pointset.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx [ 22%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pointset_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pointset_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset_warp.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_txt(const char*) [with T = Labeled_point]’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx:100:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 100 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Labeled_point]’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx:57:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 57 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_txt(const char*) [with T = Point]’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx:100:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 100 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx: In member function ‘void Pointset::load_fcsv(const char*) [with T = Point]’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pointset.cxx:57:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 57 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/proj_image.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image.cxx: In function ‘void pfm_load(Proj_image*, const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image.cxx:175:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 175 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image.cxx:183:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 183 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image.cxx:190:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 190 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_image_dir.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_image_dir.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_matrix.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/proj_matrix.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_matrix.cxx [ 23%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/proj_volume.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/proj_volume.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_volume.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/pwlut.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/pwlut.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/pwlut.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_volume.cxx: In member function ‘void Proj_volume::save_header(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_volume.cxx:299:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 299 | fprintf (fp, "num_steps=%d\n", d_ptr->num_steps); | ~^ ~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/proj_volume.cxx:301:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 301 | fprintf (fp, "image_dim=%d %d\n", | ~^ | | | int | %ld 302 | d_ptr->image_dim[0], d_ptr->image_dim[1]); | ~~~~~~~~~~~~~~~~~~~ | | | plm_long {aka long int} [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterize_slice.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rasterize_slice.cxx [ 24%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rasterizer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rasterizer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rasterizer.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/raw_pointset.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/raw_pointset.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/raw_pointset.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/ray_trace_probe.cxx [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/ray_trace_uniform.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_fcsv(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/raw_pointset.cxx:81:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 81 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/raw_pointset.cxx: In function ‘Raw_pointset* pointset_load_txt(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/raw_pointset.cxx:135:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 135 | fgets (s, 1024, fp); | ~~~~~~^~~~~~~~~~~~~ [ 25%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rpl_volume.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rpl_volume.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rpl_volume_lut.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtds_dcmtk.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rpl_volume.cxx: In member function ‘void Rpl_volume::apply_beam_modifiers()’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rpl_volume.cxx:1471:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1471 | printf ("ires = %d %d\n", ires[0], ires[1]); | ~^ ~~~~~~~ | | | | int plm_long {aka long int} | %ld [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rt_study.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rt_study.cxx [ 26%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rt_study_metadata.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtog_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtog_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtog_io.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtss.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtss.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_contour.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtss_contour.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtss_contour.cxx [ 27%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtss_roi.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtss_roi.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtss_roi.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtplan.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtplan.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_beam.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtplan_beam.cxx [ 28%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/rtplan_control_pt.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/segmentation.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/segmentation.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/segmentation.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_extract.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/slice_extract.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/slice_extract.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/slice_list.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/slice_list.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/slice_list.cxx [ 29%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_img_extract.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/ss_img_extract.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ss_list_io.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ss_list_io.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/ss_list_io.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/threading.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/threading.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/threading.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/thumbnail.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/thumbnail.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/thumbnail.cxx [ 30%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/vf.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/vf.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_convolve.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/vf_convolve.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/vf_convolve.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_jacobian.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/vf_jacobian.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/vf_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/vf_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/vf_stats.cxx [ 31%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_boundary_behavior.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_conv.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmbase.dir/volume_conv.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_conv.cxx [ 32%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_fill.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_fill.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_fill.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_gaussian.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_gaussian.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_grad.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_grad.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_grad.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_header.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_header.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_header.cxx [ 33%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_limit.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_limit.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_limit.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_resample.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_resample.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_resample.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/volume_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/volume_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/volume_stats.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform.cxx [ 34%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_convert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_convert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_convert.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_legacy.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_legacy.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xform_point.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xform_point.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_point.cxx [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_ct.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_save_itk_bsp(itk::BSplineDeformableTransform::Pointer, const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:230:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘itk::Transform::NumberOfParametersType’ {aka ‘long unsigned int’} [-Wformat=] 230 | printf (" # of parameters=%d\n", transform->GetBulkTransform()->GetNumberOfParameters()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int itk::Transform::NumberOfParametersType {aka long unsigned int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx: In function ‘void xform_legacy_load(Xform*, FILE*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:37:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 37 | fgets (buf,1024,fp); | ~~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:99:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 99 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:100:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 100 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:103:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 103 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:141:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 141 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:150:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 150 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:156:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 156 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xform_legacy.cxx:168:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 168 | fgets(buf,1024,fp); | ~~~~~^~~~~~~~~~~~~ [ 35%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_ct_transform.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_demographic.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_demographic.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_demographic.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dir.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dir.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dir.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx [ 36%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_patient.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_patient.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_patient.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_plan.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_plan.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_plan.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx: In function ‘void xio_dose_load_header(Xio_dose_header*, const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:73:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 73 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:82:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 82 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:86:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 86 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 90 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:101:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 101 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:106:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 106 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:117:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 117 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 120 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_dose.cxx:135:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 135 | fgets (line1, sizeof(line1), fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_structures.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_structures.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx [ 37%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xio_studyset.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xio_studyset.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_studyset.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/xpm.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/xpm.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xpm.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_file.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_file.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx: In function ‘void add_cms_structure(Rtss*, const Xio_studyset&, const char*, float)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:120:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 120 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:121:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 121 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:122:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 122 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:123:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 123 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:124:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 124 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:134:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 134 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:141:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 141 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/xio_structures.cxx:180:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 180 | fgets (buf, 1024, fp); | ~~~~~~^~~~~~~~~~~~~~~ [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_image.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_image.cxx [ 38%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_metadata.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_module.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_module.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rdd.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtdose.cxx [ 39%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtss.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx: In member function ‘void Dcmtk_rt_study::rt_ion_plan_load()’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:101:30: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 101 | printf (">> Num beams = %d\n", num_beams); | ~^ ~~~~~~~~~ | | | | int long unsigned int | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:142:35: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 142 | printf (">> Adding beam (%d cp)\n", num_cp); | ~^ ~~~~~~ | | | | int long unsigned int | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rtplan.cxx:208:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 208 | printf (">> Adding cp (%d spots)\n", num_spots); | ~^ ~~~~~~~~~ | | | | int long int | %ld [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rt_study.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_rt_study_p.cxx [ 40%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_series.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_series.cxx [ 41%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_sro.cxx [ 41%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_uid.cxx [ 41%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/dcmtk_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/dcmtk_util.cxx [ 42%] Building CXX object src/plastimatch/base/CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmbase_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base/ray_trace_exact.cxx [ 42%] Linking CXX shared library ../../../libplmbase.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmbase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmbase.so.1.8 -o ../../../libplmbase.so.1.8 CMakeFiles/plmbase.dir/aperture.cxx.o CMakeFiles/plmbase.dir/astroid_dose.cxx.o CMakeFiles/plmbase.dir/bspline_header.cxx.o CMakeFiles/plmbase.dir/bspline_interpolate.cxx.o CMakeFiles/plmbase.dir/bspline_warp.cxx.o CMakeFiles/plmbase.dir/bspline_xform.cxx.o CMakeFiles/plmbase.dir/bspline_xform_legacy.cxx.o CMakeFiles/plmbase.dir/cxt_extract.cxx.o CMakeFiles/plmbase.dir/cxt_io.cxx.o CMakeFiles/plmbase.dir/dicom_probe.cxx.o CMakeFiles/plmbase.dir/dicom_util.cxx.o CMakeFiles/plmbase.dir/direction_cosines.cxx.o CMakeFiles/plmbase.dir/direction_matrices.cxx.o CMakeFiles/plmbase.dir/exchkeys.cxx.o CMakeFiles/plmbase.dir/float_pair_list.cxx.o CMakeFiles/plmbase.dir/gaussian.cxx.o CMakeFiles/plmbase.dir/hnd_io.cxx.o CMakeFiles/plmbase.dir/image_stats.cxx.o CMakeFiles/plmbase.dir/interpolate.cxx.o CMakeFiles/plmbase.dir/itk_bbox.cxx.o CMakeFiles/plmbase.dir/itk_directions.cxx.o CMakeFiles/plmbase.dir/itk_image.cxx.o CMakeFiles/plmbase.dir/itk_image_accumulate.cxx.o CMakeFiles/plmbase.dir/itk_image_cast.cxx.o CMakeFiles/plmbase.dir/itk_image_clone.cxx.o CMakeFiles/plmbase.dir/itk_image_create.cxx.o CMakeFiles/plmbase.dir/itk_image_header_compare.cxx.o CMakeFiles/plmbase.dir/itk_image_load_char.cxx.o CMakeFiles/plmbase.dir/itk_image_load_double.cxx.o CMakeFiles/plmbase.dir/itk_image_load_float.cxx.o CMakeFiles/plmbase.dir/itk_image_load_int32.cxx.o CMakeFiles/plmbase.dir/itk_image_load_short.cxx.o CMakeFiles/plmbase.dir/itk_image_load_uchar.cxx.o CMakeFiles/plmbase.dir/itk_image_load_uint32.cxx.o CMakeFiles/plmbase.dir/itk_image_load_ushort.cxx.o CMakeFiles/plmbase.dir/itk_image_load_vec.cxx.o CMakeFiles/plmbase.dir/itk_image_origin.cxx.o CMakeFiles/plmbase.dir/itk_image_region.cxx.o CMakeFiles/plmbase.dir/itk_image_save.cxx.o CMakeFiles/plmbase.dir/itk_image_shift_scale.cxx.o CMakeFiles/plmbase.dir/itk_image_stats.cxx.o CMakeFiles/plmbase.dir/itk_metadata.cxx.o CMakeFiles/plmbase.dir/itk_pointset.cxx.o CMakeFiles/plmbase.dir/itk_resample.cxx.o CMakeFiles/plmbase.dir/itk_volume_header.cxx.o CMakeFiles/plmbase.dir/itk_warp.cxx.o CMakeFiles/plmbase.dir/mc_dose.cxx.o CMakeFiles/plmbase.dir/metadata.cxx.o CMakeFiles/plmbase.dir/mha_io.cxx.o CMakeFiles/plmbase.dir/nki_io.cxx.o CMakeFiles/plmbase.dir/parameter_parser.cxx.o CMakeFiles/plmbase.dir/plm_file_format.cxx.o CMakeFiles/plmbase.dir/plm_image.cxx.o CMakeFiles/plmbase.dir/plm_image_convert.cxx.o CMakeFiles/plmbase.dir/plm_image_header.cxx.o CMakeFiles/plmbase.dir/plm_image_set.cxx.o CMakeFiles/plmbase.dir/plm_image_type.cxx.o CMakeFiles/plmbase.dir/plm_warp.cxx.o CMakeFiles/plmbase.dir/pointset.cxx.o CMakeFiles/plmbase.dir/pointset_warp.cxx.o CMakeFiles/plmbase.dir/proj_image.cxx.o CMakeFiles/plmbase.dir/proj_image_dir.cxx.o CMakeFiles/plmbase.dir/proj_matrix.cxx.o CMakeFiles/plmbase.dir/proj_volume.cxx.o CMakeFiles/plmbase.dir/pwlut.cxx.o CMakeFiles/plmbase.dir/rasterize_slice.cxx.o CMakeFiles/plmbase.dir/rasterizer.cxx.o CMakeFiles/plmbase.dir/raw_pointset.cxx.o CMakeFiles/plmbase.dir/ray_trace_probe.cxx.o CMakeFiles/plmbase.dir/ray_trace_uniform.cxx.o CMakeFiles/plmbase.dir/rpl_volume.cxx.o CMakeFiles/plmbase.dir/rpl_volume_lut.cxx.o CMakeFiles/plmbase.dir/rtds_dcmtk.cxx.o CMakeFiles/plmbase.dir/rt_study.cxx.o CMakeFiles/plmbase.dir/rt_study_metadata.cxx.o CMakeFiles/plmbase.dir/rtog_io.cxx.o CMakeFiles/plmbase.dir/rtss.cxx.o CMakeFiles/plmbase.dir/rtss_contour.cxx.o CMakeFiles/plmbase.dir/rtss_roi.cxx.o CMakeFiles/plmbase.dir/rtplan.cxx.o CMakeFiles/plmbase.dir/rtplan_beam.cxx.o CMakeFiles/plmbase.dir/rtplan_control_pt.cxx.o CMakeFiles/plmbase.dir/segmentation.cxx.o CMakeFiles/plmbase.dir/slice_extract.cxx.o CMakeFiles/plmbase.dir/slice_list.cxx.o CMakeFiles/plmbase.dir/ss_img_extract.cxx.o CMakeFiles/plmbase.dir/ss_list_io.cxx.o CMakeFiles/plmbase.dir/threading.cxx.o CMakeFiles/plmbase.dir/thumbnail.cxx.o CMakeFiles/plmbase.dir/vf.cxx.o CMakeFiles/plmbase.dir/vf_convolve.cxx.o CMakeFiles/plmbase.dir/vf_jacobian.cxx.o CMakeFiles/plmbase.dir/vf_stats.cxx.o CMakeFiles/plmbase.dir/volume.cxx.o CMakeFiles/plmbase.dir/volume_boundary_behavior.cxx.o CMakeFiles/plmbase.dir/volume_conv.cxx.o CMakeFiles/plmbase.dir/volume_fill.cxx.o CMakeFiles/plmbase.dir/volume_gaussian.cxx.o CMakeFiles/plmbase.dir/volume_grad.cxx.o CMakeFiles/plmbase.dir/volume_header.cxx.o CMakeFiles/plmbase.dir/volume_limit.cxx.o CMakeFiles/plmbase.dir/volume_resample.cxx.o CMakeFiles/plmbase.dir/volume_stats.cxx.o CMakeFiles/plmbase.dir/xform.cxx.o CMakeFiles/plmbase.dir/xform_convert.cxx.o CMakeFiles/plmbase.dir/xform_legacy.cxx.o CMakeFiles/plmbase.dir/xform_point.cxx.o CMakeFiles/plmbase.dir/xio_ct.cxx.o CMakeFiles/plmbase.dir/xio_ct_transform.cxx.o CMakeFiles/plmbase.dir/xio_demographic.cxx.o CMakeFiles/plmbase.dir/xio_dir.cxx.o CMakeFiles/plmbase.dir/xio_dose.cxx.o CMakeFiles/plmbase.dir/xio_patient.cxx.o CMakeFiles/plmbase.dir/xio_plan.cxx.o CMakeFiles/plmbase.dir/xio_structures.cxx.o CMakeFiles/plmbase.dir/xio_studyset.cxx.o CMakeFiles/plmbase.dir/xpm.cxx.o CMakeFiles/plmbase.dir/dcmtk_file.cxx.o CMakeFiles/plmbase.dir/dcmtk_image.cxx.o CMakeFiles/plmbase.dir/dcmtk_metadata.cxx.o CMakeFiles/plmbase.dir/dcmtk_module.cxx.o CMakeFiles/plmbase.dir/dcmtk_rdd.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtdose.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtss.cxx.o CMakeFiles/plmbase.dir/dcmtk_rtplan.cxx.o CMakeFiles/plmbase.dir/dcmtk_rt_study.cxx.o CMakeFiles/plmbase.dir/dcmtk_rt_study_p.cxx.o CMakeFiles/plmbase.dir/dcmtk_series.cxx.o CMakeFiles/plmbase.dir/dcmtk_sro.cxx.o CMakeFiles/plmbase.dir/dcmtk_uid.cxx.o CMakeFiles/plmbase.dir/dcmtk_util.cxx.o CMakeFiles/plmbase.dir/ray_trace_exact.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libnkidecompress.a ../../../libplmsys.so.1.8 /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base && /usr/bin/cmake -E cmake_symlink_library ../../../libplmbase.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmbase.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 42%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= Scanning dependencies of target plmutil make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 42%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/bspline_correspond.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/bspline_correspond.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/bspline_correspond.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dice_statistics.cxx.o [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/dice_statistics.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/dice_statistics.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/dicom_sro_save.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/distance_map.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/distance_map.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/distance_map.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/diff.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/diff.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/diff.cxx [ 43%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/dvh.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/dvh.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/dvh.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/gamma_dose_comparison.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/geometry_chooser.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/geometry_chooser.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/hausdorff_distance.cxx [ 44%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_boundary.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/image_boundary.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/image_boundary.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/image_center.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmutil.dir/image_center.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/image_center.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_adjust.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_adjust.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_adjust.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_crop.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_crop.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_crop.cxx [ 45%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_distance_map.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_distance_map.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_gabor.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_gabor.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_gabor.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_histogram_matching.cxx [ 46%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_local_intensity_correction.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_mask.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_mask.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_mask.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_scale.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_scale.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_scale.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_threshold.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_threshold.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_threshold.cxx [ 47%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/itk_union.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/itk_union.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/itk_union.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/landmark_diff.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/landmark_diff.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/landmark_diff.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/proj_image_filter.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/proj_image_filter.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_series.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/plm_series.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/plm_series.cxx [ 48%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/plm_study.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/plm_study.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/plm_study.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/rt_study_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/rt_study_warp.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/sift.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/sift.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/sift.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/simplify_points.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/simplify_points.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/simplify_points.cxx [ 49%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ss_img_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/ss_img_stats.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_mha.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/synthetic_mha.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/synthetic_vf.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/synthetic_vf.cxx [ 50%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/threshbox.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/threshbox.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_adjust.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_adjust.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/volume_adjust.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx: In function ‘void do_overlap_fraction(Threshbox_parms*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx:257:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 257 | fscanf(fp1, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx:258:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 258 | fscanf(fp1, "%f %f %f", &phys_max1[0], &phys_max1[1], &phys_max1[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx:266:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 266 | fscanf(fp2, "%s", tmpbuf); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/threshbox.cxx:267:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 267 | fscanf(fp2, "%f %f %f", &phys_max2[0], &phys_max2[1], &phys_max2[2]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/volume_boundary_type.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/xf_invert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/xf_invert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/xf_invert.cxx [ 51%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/gabor.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/gabor.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/gabor.cxx [ 52%] Building CXX object src/plastimatch/util/CMakeFiles/plmutil.dir/ramp_filter.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmutil_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/ramp_filter.cxx [ 52%] Linking CXX shared library ../../../libplmutil.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmutil.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmutil.so.1.8 -o ../../../libplmutil.so.1.8 CMakeFiles/plmutil.dir/bspline_correspond.cxx.o CMakeFiles/plmutil.dir/dice_statistics.cxx.o CMakeFiles/plmutil.dir/dicom_sro_save.cxx.o CMakeFiles/plmutil.dir/distance_map.cxx.o CMakeFiles/plmutil.dir/diff.cxx.o CMakeFiles/plmutil.dir/dvh.cxx.o CMakeFiles/plmutil.dir/gamma_dose_comparison.cxx.o CMakeFiles/plmutil.dir/geometry_chooser.cxx.o CMakeFiles/plmutil.dir/hausdorff_distance.cxx.o CMakeFiles/plmutil.dir/image_boundary.cxx.o CMakeFiles/plmutil.dir/image_center.cxx.o CMakeFiles/plmutil.dir/itk_adjust.cxx.o CMakeFiles/plmutil.dir/itk_crop.cxx.o CMakeFiles/plmutil.dir/itk_distance_map.cxx.o CMakeFiles/plmutil.dir/itk_gabor.cxx.o CMakeFiles/plmutil.dir/itk_histogram_matching.cxx.o CMakeFiles/plmutil.dir/itk_local_intensity_correction.cxx.o CMakeFiles/plmutil.dir/itk_mask.cxx.o CMakeFiles/plmutil.dir/itk_scale.cxx.o CMakeFiles/plmutil.dir/itk_threshold.cxx.o CMakeFiles/plmutil.dir/itk_union.cxx.o CMakeFiles/plmutil.dir/landmark_diff.cxx.o CMakeFiles/plmutil.dir/proj_image_filter.cxx.o CMakeFiles/plmutil.dir/plm_series.cxx.o CMakeFiles/plmutil.dir/plm_study.cxx.o CMakeFiles/plmutil.dir/rt_study_warp.cxx.o CMakeFiles/plmutil.dir/sift.cxx.o CMakeFiles/plmutil.dir/simplify_points.cxx.o CMakeFiles/plmutil.dir/ss_img_stats.cxx.o CMakeFiles/plmutil.dir/synthetic_mha.cxx.o CMakeFiles/plmutil.dir/synthetic_vf.cxx.o CMakeFiles/plmutil.dir/threshbox.cxx.o CMakeFiles/plmutil.dir/volume_adjust.cxx.o CMakeFiles/plmutil.dir/volume_boundary_type.cxx.o CMakeFiles/plmutil.dir/xf_invert.cxx.o CMakeFiles/plmutil.dir/gabor.cxx.o CMakeFiles/plmutil.dir/ramp_filter.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include -lfftw3f -lfftw3 ../../../libdevillard.a ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lnsl -lblas -llapack -lsqlite3 -ldouble-conversion /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -ldl /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -lm ../../../libnkidecompress.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util && /usr/bin/cmake -E cmake_symlink_library ../../../libplmutil.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmutil.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 52%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= Scanning dependencies of target plmreconstruct make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/bowtie_correction.cxx [ 52%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/drr.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/drr.cxx Scanning dependencies of target plmdose make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 53%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_calc.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_calc.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/beam_calc.cxx Scanning dependencies of target plmregister make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 53%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_options.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/drr_options.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/drr_trilin.cxx [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmreconstruct.dir/fdk.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/fdk.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/beam_calc.cxx: In member function ‘bool Beam_calc::load(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/beam_calc.cxx:194:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 194 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmreconstruct_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/fdk_util.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_landmarks.cxx [ 54%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_gm.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_gm.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_gm.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/beam_map.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/beam_map.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/beam_map.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/bragg_curve.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/bragg_curve.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/bragg_curve.cxx [ 54%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/compute_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/compute_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/compute_dose.cxx [ 55%] Linking CXX shared library ../../../libplmreconstruct.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmreconstruct.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmreconstruct.so.1.8 -o ../../../libplmreconstruct.so.1.8 CMakeFiles/plmreconstruct.dir/bowtie_correction.cxx.o CMakeFiles/plmreconstruct.dir/drr.cxx.o CMakeFiles/plmreconstruct.dir/drr_options.cxx.o CMakeFiles/plmreconstruct.dir/drr_trilin.cxx.o CMakeFiles/plmreconstruct.dir/fdk.cxx.o CMakeFiles/plmreconstruct.dir/fdk_util.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 56%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mi.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mi.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_mi.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/dose_volume_functions.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct && /usr/bin/cmake -E cmake_symlink_library ../../../libplmreconstruct.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmreconstruct.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 57%] Built target plmreconstruct [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_mse.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -msse2 -o CMakeFiles/plmregister.dir/bspline_mse.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_mse.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/particle_type.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/particle_type.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/particle_type.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_beam_model.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_beam_model.cxx [ 57%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_optimize.cxx [ 57%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:64:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 64 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx: In member function ‘bool Rt_depth_dose::load_xio(const char*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:86:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 86 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:90:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 90 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:103:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 103 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:114:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 114 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_depth_dose.cxx:125:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 125 | fgets (linebuf, 128, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_dij.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_dij.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_dij.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_optimize_lbfgsb.cxx [ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_lut.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_lut.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_lut.cxx [ 59%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_spot_map.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_spot_map.cxx [ 59%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_optimize_liblbfgs.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_mebs.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_mebs.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_optimize_nlopt.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_parms.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_dij.cxx: In member function ‘void Rt_dij::dump(const string&) const’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_dij.cxx:51:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 51 | fprintf (fp, "%d %f\n", c->index, c->dose); | ~^ ~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld [ 60%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_optimize_steepest.cxx [ 60%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/plan_calc.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/plan_calc.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::load_beamlet_map(Aperture::Pointer&)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1129:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1129 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1180:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1180 | printf("line %d: beamlet number expected: %d, beamlet number detected: %d.\n", line_number, ap->get_dim(0), beamlet_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1189:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1189 | printf("beamlet line number expected: %d, beamlet line detected: %d.\n", ap->get_dim(1), line_number); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::compute_particle_number_matrix_from_target_active(Rpl_volume*, std::vector&, std::vector&)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1213:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1213 | printf("Aperture size: %d, min depth map size: %d, max depth map size: %d.\n", rpl_vol->get_aperture()->get_dim(0) * rpl_vol->get_aperture()->get_dim(1), (int) wepl_min.size(), (int) wepl_max.size()); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx: In member function ‘void Rt_mebs::export_as_txt(const string&, Aperture::Pointer)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:18: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_mebs.cxx:1385:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 1385 | printf ("Ap %d %d\n", ap->get_dim(0), ap->get_dim(1)); | ~^ ~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_parms.cxx [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_score.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_score.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_score.cxx [ 61%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/rt_sigma.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/rt_sigma.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/rt_sigma.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::normalize_beam_dose(Beam_calc*)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:424:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 424 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:438:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 438 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:44: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:452:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 452 | printf("Primary PB num. x, y: %d, %d, primary PB res. x, y: %lg PB/mm, %lg PB/mm\n", beam->get_aperture()->get_dim(0), beam->get_aperture()->get_dim(1), 1.0 / (double) beam->get_aperture()->get_spacing(0), 1.0 / (double) beam->get_aperture()->get_spacing(1)); | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx: In member function ‘void Plan_calc::print_verif()’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:73: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/plan_calc.cxx:759:76: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘plm_long’ {aka ‘long int’} [-Wformat=] 759 | printf("\n i_res: "); for (int i = 0; i < num_beams; i++) {printf("%d %d ** ", d_ptr->beam_storage[i]->get_aperture()->get_dim()[0], d_ptr->beam_storage[i]->get_aperture()->get_dim()[1]);} | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | int plm_long {aka long int} | %ld [ 61%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_stage.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_stage.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_stage.cxx [ 62%] Building CXX object src/plastimatch/dose/CMakeFiles/plmdose.dir/wed_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmdose_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmdose.dir/wed_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/wed_parms.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/wed_parms.cxx: In member function ‘int Wed_Parms::set_key_val(const char*, const char*, int)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/wed_parms.cxx:228:32: warning: format ‘%i’ expects argument of type ‘int*’, but argument 3 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=] 228 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 229 | &(this->ires[0]), | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose/wed_parms.cxx:228:35: warning: format ‘%i’ expects argument of type ‘int*’, but argument 4 has type ‘plm_long*’ {aka ‘long int*’} [-Wformat=] 228 | if (sscanf (val, "%i %i", | ~^ | | | int* | %li 229 | &(this->ires[0]), 230 | &(this->ires[1])) != 2) | ~~~~~~~~~~~~~~~~ | | | plm_long* {aka long int*} [ 62%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_state.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_state.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_state.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_regularize.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_regularize_analytic.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_regularize_numeric.cxx [ 63%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/bspline_regularize_semi_analytic.cxx [ 63%] Linking CXX shared library ../../../libplmdose.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmdose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmdose.so.1.8 -o ../../../libplmdose.so.1.8 CMakeFiles/plmdose.dir/beam_calc.cxx.o CMakeFiles/plmdose.dir/beam_map.cxx.o CMakeFiles/plmdose.dir/bragg_curve.cxx.o CMakeFiles/plmdose.dir/compute_dose.cxx.o CMakeFiles/plmdose.dir/dose_volume_functions.cxx.o CMakeFiles/plmdose.dir/particle_type.cxx.o CMakeFiles/plmdose.dir/rt_beam_model.cxx.o CMakeFiles/plmdose.dir/rt_depth_dose.cxx.o CMakeFiles/plmdose.dir/rt_dij.cxx.o CMakeFiles/plmdose.dir/rt_lut.cxx.o CMakeFiles/plmdose.dir/rt_spot_map.cxx.o CMakeFiles/plmdose.dir/rt_mebs.cxx.o CMakeFiles/plmdose.dir/rt_parms.cxx.o CMakeFiles/plmdose.dir/plan_calc.cxx.o CMakeFiles/plmdose.dir/rt_sigma.cxx.o CMakeFiles/plmdose.dir/wed_parms.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmutil.so.1.8 ../../../libspecfun.a ../../../libplmbase.so.1.8 -ldouble-conversion /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.8 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/demons.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_cpu.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons_cpu.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/demons_cpu.cxx [ 64%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/demons_state.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/demons_state.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/demons_state.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/gpuit_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/gpuit_demons.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/groupwise_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/groupwise_parms.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/histogram.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/histogram.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/histogram.cxx [ 65%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_align_center.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_align_center.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_align_center.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_demons.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose && /usr/bin/cmake -E cmake_symlink_library ../../../libplmdose.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmdose.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 66%] Built target plmdose [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_demons_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_demons_util.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_diff_demons.cxx [ 66%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_fsf_demons.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_log_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_log_demons.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_sym_log_demons.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_optimizer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_optimizer.cxx [ 67%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_registration.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_registration.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_registration_observer.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/itk_tps.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/itk_tps.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/itk_tps.cxx [ 68%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/joint_histogram.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/joint_histogram.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/joint_histogram.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/landmark_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/landmark_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/landmark_warp.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/metric_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/metric_parms.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/metric_state.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/metric_state.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/metric_state.cxx [ 69%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/process_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/process_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/process_parms.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_cluster.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/rbf_cluster.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_gauss.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/rbf_gauss.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/rbf_wendland.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/rbf_wendland.cxx [ 70%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/registration.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/registration.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_data.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/registration_data.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/registration_data.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/registration_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/registration_parms.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_resample.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/registration_resample.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/registration_resample.cxx [ 71%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/registration_util.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/registration_util.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/registration_util.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/shared_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/shared_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/shared_parms.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/similarity_metric_type.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/stage_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/stage_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/stage_parms.cxx [ 72%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_grid_search.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/translation_grid_search.cxx [ 73%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mi.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/translation_mi.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/translation_mi.cxx [ 73%] Building CXX object src/plastimatch/register/CMakeFiles/plmregister.dir/translation_mse.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmregister_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmregister.dir/translation_mse.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/translation_mse.cxx [ 73%] Linking CXX shared library ../../../libplmregister.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmregister.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmregister.so.1.8 -o ../../../libplmregister.so.1.8 CMakeFiles/plmregister.dir/bspline.cxx.o CMakeFiles/plmregister.dir/bspline_landmarks.cxx.o CMakeFiles/plmregister.dir/bspline_gm.cxx.o CMakeFiles/plmregister.dir/bspline_mi.cxx.o CMakeFiles/plmregister.dir/bspline_mse.cxx.o CMakeFiles/plmregister.dir/bspline_optimize.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_lbfgsb.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_liblbfgs.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_nlopt.cxx.o CMakeFiles/plmregister.dir/bspline_optimize_steepest.cxx.o CMakeFiles/plmregister.dir/bspline_parms.cxx.o CMakeFiles/plmregister.dir/bspline_score.cxx.o CMakeFiles/plmregister.dir/bspline_stage.cxx.o CMakeFiles/plmregister.dir/bspline_state.cxx.o CMakeFiles/plmregister.dir/bspline_regularize.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_analytic.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_numeric.cxx.o CMakeFiles/plmregister.dir/bspline_regularize_semi_analytic.cxx.o CMakeFiles/plmregister.dir/demons.cxx.o CMakeFiles/plmregister.dir/demons_cpu.cxx.o CMakeFiles/plmregister.dir/demons_state.cxx.o CMakeFiles/plmregister.dir/gpuit_demons.cxx.o CMakeFiles/plmregister.dir/groupwise_parms.cxx.o CMakeFiles/plmregister.dir/histogram.cxx.o CMakeFiles/plmregister.dir/itk_align_center.cxx.o CMakeFiles/plmregister.dir/itk_demons.cxx.o CMakeFiles/plmregister.dir/itk_demons_util.cxx.o CMakeFiles/plmregister.dir/itk_diff_demons.cxx.o CMakeFiles/plmregister.dir/itk_fsf_demons.cxx.o CMakeFiles/plmregister.dir/itk_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_sym_log_demons.cxx.o CMakeFiles/plmregister.dir/itk_optimizer.cxx.o CMakeFiles/plmregister.dir/itk_registration.cxx.o CMakeFiles/plmregister.dir/itk_registration_observer.cxx.o CMakeFiles/plmregister.dir/itk_tps.cxx.o CMakeFiles/plmregister.dir/joint_histogram.cxx.o CMakeFiles/plmregister.dir/landmark_warp.cxx.o CMakeFiles/plmregister.dir/metric_parms.cxx.o CMakeFiles/plmregister.dir/metric_state.cxx.o CMakeFiles/plmregister.dir/process_parms.cxx.o CMakeFiles/plmregister.dir/rbf_cluster.cxx.o CMakeFiles/plmregister.dir/rbf_gauss.cxx.o CMakeFiles/plmregister.dir/rbf_wendland.cxx.o CMakeFiles/plmregister.dir/registration.cxx.o CMakeFiles/plmregister.dir/registration_data.cxx.o CMakeFiles/plmregister.dir/registration_parms.cxx.o CMakeFiles/plmregister.dir/registration_resample.cxx.o CMakeFiles/plmregister.dir/registration_util.cxx.o CMakeFiles/plmregister.dir/shared_parms.cxx.o CMakeFiles/plmregister.dir/similarity_metric_type.cxx.o CMakeFiles/plmregister.dir/stage_parms.cxx.o CMakeFiles/plmregister.dir/translation_grid_search.cxx.o CMakeFiles/plmregister.dir/translation_mi.cxx.o CMakeFiles/plmregister.dir/translation_mse.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../liblbfgs.a ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 -ldouble-conversion /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3_threads -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a ../../../libplmsys.so.1.8 -lpthread -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 -lfftw3f -lfftw3 ../../../libdevillard.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register && /usr/bin/cmake -E cmake_symlink_library ../../../libplmregister.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmregister.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 73%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= Scanning dependencies of target plmsegment make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel.cxx.o [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_parms.cxx [ 74%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_feature.cxx cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_ransac_est.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_task.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_task.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_thumbnailer.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/autolabel_trainer.cxx [ 75%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/dlib_trainer.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_atlas_selection.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_parms.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_parms.cxx [ 76%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_seg_weights.cxx [ 77%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_stats.cxx [ 77%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_staple.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_staple.cxx [ 77%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/mabs_vote.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -fopenmp -o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/mabs_vote.cxx [ 78%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/ml_convert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/ml_convert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/ml_convert.cxx [ 78%] Building CXX object src/plastimatch/segment/CMakeFiles/plmsegment.dir/segment_body.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -Dplmsegment_EXPORTS -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plmsegment.dir/segment_body.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment/segment_body.cxx [ 78%] Linking CXX shared library ../../../libplmsegment.so cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_link_script CMakeFiles/plmsegment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libplmsegment.so.1.8 -o ../../../libplmsegment.so.1.8 CMakeFiles/plmsegment.dir/autolabel.cxx.o CMakeFiles/plmsegment.dir/autolabel_feature.cxx.o CMakeFiles/plmsegment.dir/autolabel_parms.cxx.o CMakeFiles/plmsegment.dir/autolabel_ransac_est.cxx.o CMakeFiles/plmsegment.dir/autolabel_task.cxx.o CMakeFiles/plmsegment.dir/autolabel_thumbnailer.cxx.o CMakeFiles/plmsegment.dir/autolabel_trainer.cxx.o CMakeFiles/plmsegment.dir/dlib_trainer.cxx.o CMakeFiles/plmsegment.dir/mabs.cxx.o CMakeFiles/plmsegment.dir/mabs_atlas_selection.cxx.o CMakeFiles/plmsegment.dir/mabs_parms.cxx.o CMakeFiles/plmsegment.dir/mabs_seg_weights.cxx.o CMakeFiles/plmsegment.dir/mabs_stats.cxx.o CMakeFiles/plmsegment.dir/mabs_staple.cxx.o CMakeFiles/plmsegment.dir/mabs_vote.cxx.o CMakeFiles/plmsegment.dir/ml_convert.cxx.o CMakeFiles/plmsegment.dir/segment_body.cxx.o -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../../../libplmregister.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lm ../../../libnkidecompress.a -ldl /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 ../../../liblbfgs.a cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment && /usr/bin/cmake -E cmake_symlink_library ../../../libplmsegment.so.1.8 ../../../libplmsegment.so.1.8 ../../../libplmsegment.so make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= Scanning dependencies of target sobp make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build Scanning dependencies of target dicom_uid make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' Scanning dependencies of target compute_distance [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/sobp.dir/sobp_main.cxx.o [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/sobp.dir/sobp_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/sobp_main.cxx make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/dicom_uid_main.cxx make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/compute_distance.cxx Scanning dependencies of target plastimatch make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_add.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_add.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_add.cxx [ 79%] Linking CXX executable ../../../dicom_uid cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_uid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_uid.dir/dicom_uid_main.cxx.o -o ../../../dicom_uid -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 79%] Linking CXX executable ../../../sobp cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/sobp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/sobp.dir/sobp_main.cxx.o -o ../../../sobp -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 79%] Built target sobp make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= Scanning dependencies of target wed make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/wed.dir/wed_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/wed.dir/wed_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/wed_main.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Built target dicom_uid make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= Scanning dependencies of target dlib_train make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/dlib_train.cxx [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/closest_point.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/closest_point.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/closest_point.cxx [ 80%] Linking CXX executable ../../../wed cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/wed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/wed.dir/wed_main.cxx.o -o ../../../wed -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/compute_distance.dir/read_obj.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/compute_distance.dir/read_obj.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/read_obj.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Built target wed make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= Scanning dependencies of target shuffle_mha make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/shuffle_mha_main.cxx [ 81%] Linking CXX executable ../../../compute_distance cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_distance.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/compute_distance.dir/compute_distance.cxx.o CMakeFiles/compute_distance.dir/closest_point.cxx.o CMakeFiles/compute_distance.dir/read_obj.cxx.o -o ../../../compute_distance -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Built target compute_distance make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= Scanning dependencies of target landmark_diff make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/landmark_diff_main.cxx [ 81%] Linking CXX executable ../../../landmark_diff cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/landmark_diff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/landmark_diff.dir/landmark_diff_main.cxx.o -o ../../../landmark_diff -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 81%] Linking CXX executable ../../../shuffle_mha cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/shuffle_mha.dir/link.txt --verbose=1 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Built target landmark_diff make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bspline.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/shuffle_mha.dir/shuffle_mha_main.cxx.o -o ../../../shuffle_mha -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 Scanning dependencies of target bspline make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 82%] Building CXX object src/plastimatch/standalone/CMakeFiles/bspline.dir/bspline_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bspline.dir/bspline_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/bspline_main.cxx [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_adjust.cxx [ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/bspline.dir/bspline_opts.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bspline.dir/bspline_opts.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/bspline_opts.cxx [ 83%] Linking CXX executable ../../../bspline cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bspline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bspline.dir/bspline_main.cxx.o CMakeFiles/bspline.dir/bspline_opts.cxx.o -o ../../../bspline -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Built target shuffle_mha make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= Scanning dependencies of target merge_vfs make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/merge_vector_fields.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Built target bspline make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= Scanning dependencies of target xvi_archive make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/xvi_archive.cxx [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_autolabel_train.cxx [ 83%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_autolabel.cxx [ 84%] Linking CXX executable ../../../merge_vfs cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/merge_vfs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/merge_vfs.dir/merge_vector_fields.cxx.o -o ../../../merge_vfs -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 85%] Linking CXX executable ../../../xvi_archive cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/xvi_archive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/xvi_archive.dir/xvi_archive.cxx.o -o ../../../xvi_archive -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../libinih.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Built target merge_vfs make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= Scanning dependencies of target demons make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/demons_main.cxx [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/demons.dir/demons_opts.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/demons.dir/demons_opts.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/demons_opts.cxx [ 85%] Linking CXX executable ../../../demons cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/demons.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/demons.dir/demons_main.cxx.o CMakeFiles/demons.dir/demons_opts.cxx.o -o ../../../demons -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Built target xvi_archive make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= Scanning dependencies of target check_grad make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/check_grad.dir/check_grad.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/check_grad.dir/check_grad.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/check_grad.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Built target demons make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= Scanning dependencies of target hnd_to_pfm make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/hnd_to_pfm.cxx [ 85%] Linking CXX executable ../../../hnd_to_pfm cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/hnd_to_pfm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/hnd_to_pfm.dir/hnd_to_pfm.cxx.o -o ../../../hnd_to_pfm -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 85%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_bbox.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= Scanning dependencies of target dicom_info make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/plastimatch/standalone/CMakeFiles/dicom_info.dir/dicom_info.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/dicom_info.dir/dicom_info.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/dicom_info.cxx [ 86%] Linking CXX executable ../../../check_grad cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/check_grad.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/check_grad.dir/check_grad.cxx.o -o ../../../check_grad -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 87%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_benchmark.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 87%] Built target check_grad make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= Scanning dependencies of target bragg_curve make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/bragg_curve_main.cxx [ 87%] Building CXX object src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone/bragg_curve_opts.cxx [ 87%] Linking CXX executable ../../../bragg_curve cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/bragg_curve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/bragg_curve.dir/bragg_curve_main.cxx.o CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -o ../../../bragg_curve -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 88%] Linking CXX executable ../../../dlib_train cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlib_train.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dlib_train.dir/dlib_train.cxx.o -o ../../../dlib_train -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 88%] Built target bragg_curve [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_boundary.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 88%] Built target dlib_train [ 88%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_compare.cxx [ 89%] Linking CXX executable ../../../dicom_info cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone && /usr/bin/cmake -E cmake_link_script CMakeFiles/dicom_info.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/dicom_info.dir/dicom_info.cxx.o -o ../../../dicom_info -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 [ 89%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_compose.cxx make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 89%] Built target dicom_info [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_crop.cxx [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_dice.cxx [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_diff.cxx [ 90%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_dmap.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_dose.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_drr.cxx [ 91%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_dvh.cxx [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_fdk.cxx [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_filter.cxx [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_gamma.cxx [ 92%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_header.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_header.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_jacobian.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_lm_warp.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_mabs.cxx [ 93%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_mask.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_maximum.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_ml_convert.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_multiply.cxx [ 94%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_probe.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_register.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_register.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_resample.cxx [ 95%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_scale.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_segment.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_sift.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_stats.cxx [ 96%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_synth.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_synth_vf.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_threshold.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_thumbnail.cxx [ 97%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_union.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_union.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_warp.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_warp_dij.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_warp_pointset.cxx [ 98%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx: In function ‘void do_command_xio_dvh(int, char**)’: /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:46:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 46 | fgets(buf, 200, fp); //XiO Dose Volume Histogram | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:49:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 49 | fgets(patientid, 200, fp); // patient ID, abcde1234 | ~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:50:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 50 | fgets(buf, 200, fp); // plan | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:51:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 51 | fgets(structurename, 200, fp); // structure name | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:52:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 52 | fgets(buf, 200, fp); // N.NN mm resolution | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:54:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 54 | fgets(buf, 200, fp); // number of bins | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:59:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 59 | fgets(buf, 200, fp); // date | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:60:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 60 | fgets(buf, 200, fp); // table header: min bin dose (cGy), bin volume (cc) | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:78:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 78 | fgets(buf, 200, fp); | ~~~~~^~~~~~~~~~~~~~ /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:72:27: warning: ‘%s’ directive writing up to 254 bytes into a region of size between 0 and 254 [-Wformat-overflow=] 72 | sprintf(outfilename, "%s/%s-%s.txt",output_dir, patientid, structurename); | ^~ ~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xio_dvh.cxx:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 7 and 769 bytes into a destination of size 255 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xf_convert.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/pcmd_xf_invert.cxx [ 99%] Building CXX object src/plastimatch/cli/CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/qt -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/opencl -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cuda -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base -I/<>/plastimatch-1.8.0+dfsg.1/src/plastimatch -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -I/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/usr/include/double-conversion -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/DiffeomorphicDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/FastSymmetricForces -I/<>/plastimatch-1.8.0+dfsg.1/libs/demons_itk_insight/LOGDomainDemons -I/<>/plastimatch-1.8.0+dfsg.1/libs/nSIFT -I/<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9/include -I/<>/plastimatch-1.8.0+dfsg.1/libs -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac -I/<>/plastimatch-1.8.0+dfsg.1/libs/ransac/Common -I/<>/plastimatch-1.8.0+dfsg.1/libs/devillard -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIE -Wno-cpp -Wreturn-type -std=gnu++11 -o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -c /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli/plastimatch_main.cxx [100%] Linking CXX executable ../../../plastimatch cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/plastimatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/plastimatch-1.8.0+dfsg.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -fopenmp CMakeFiles/plastimatch.dir/pcmd_add.cxx.o CMakeFiles/plastimatch.dir/pcmd_adjust.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel_train.cxx.o CMakeFiles/plastimatch.dir/pcmd_autolabel.cxx.o CMakeFiles/plastimatch.dir/pcmd_bbox.cxx.o CMakeFiles/plastimatch.dir/pcmd_benchmark.cxx.o CMakeFiles/plastimatch.dir/pcmd_boundary.cxx.o CMakeFiles/plastimatch.dir/pcmd_compare.cxx.o CMakeFiles/plastimatch.dir/pcmd_compose.cxx.o CMakeFiles/plastimatch.dir/pcmd_crop.cxx.o CMakeFiles/plastimatch.dir/pcmd_dice.cxx.o CMakeFiles/plastimatch.dir/pcmd_diff.cxx.o CMakeFiles/plastimatch.dir/pcmd_dmap.cxx.o CMakeFiles/plastimatch.dir/pcmd_dose.cxx.o CMakeFiles/plastimatch.dir/pcmd_drr.cxx.o CMakeFiles/plastimatch.dir/pcmd_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_fdk.cxx.o CMakeFiles/plastimatch.dir/pcmd_filter.cxx.o CMakeFiles/plastimatch.dir/pcmd_gamma.cxx.o CMakeFiles/plastimatch.dir/pcmd_header.cxx.o CMakeFiles/plastimatch.dir/pcmd_jacobian.cxx.o CMakeFiles/plastimatch.dir/pcmd_lm_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_mabs.cxx.o CMakeFiles/plastimatch.dir/pcmd_mask.cxx.o CMakeFiles/plastimatch.dir/pcmd_maximum.cxx.o CMakeFiles/plastimatch.dir/pcmd_ml_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_multiply.cxx.o CMakeFiles/plastimatch.dir/pcmd_probe.cxx.o CMakeFiles/plastimatch.dir/pcmd_register.cxx.o CMakeFiles/plastimatch.dir/pcmd_resample.cxx.o CMakeFiles/plastimatch.dir/pcmd_scale.cxx.o CMakeFiles/plastimatch.dir/pcmd_segment.cxx.o CMakeFiles/plastimatch.dir/pcmd_sift.cxx.o CMakeFiles/plastimatch.dir/pcmd_stats.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth.cxx.o CMakeFiles/plastimatch.dir/pcmd_synth_vf.cxx.o CMakeFiles/plastimatch.dir/pcmd_threshold.cxx.o CMakeFiles/plastimatch.dir/pcmd_thumbnail.cxx.o CMakeFiles/plastimatch.dir/pcmd_union.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_dij.cxx.o CMakeFiles/plastimatch.dir/pcmd_warp_pointset.cxx.o CMakeFiles/plastimatch.dir/pcmd_xio_dvh.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_convert.cxx.o CMakeFiles/plastimatch.dir/pcmd_xf_invert.cxx.o CMakeFiles/plastimatch.dir/plastimatch_main.cxx.o -o ../../../plastimatch -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun -L/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu -L/usr/include ../clp/libplmclp.a ../../../libplmsegment.so.1.8 ../../../libplmregister.so.1.8 ../../../libplmreconstruct.so.1.8 ../../../libplmdose.so.1.8 ../../../libplmutil.so.1.8 ../../../libplmbase.so.1.8 ../../../libplmsys.so.1.8 -ldouble-conversion -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 ../../../libdevillard.a ../../../libnkidecompress.a -lm /usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdlib.so.19.10.0 -lfftw3f -lfftw3 -ldl ../../../libspecfun.a ../clp/libplmclp.a ../../../liblbfgs.a /usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4 -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4 /usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.4 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.4 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 -lm /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -ldl -lpthread -lnsl -lz -ljpeg -lpng -lblas -llapack -lsqlite3 make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [100%] Built target plastimatch make[2]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[2]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu Start 5: gauss-1 Start 6: gauss-2 Start 7: gauss-3 Start 9: gauss-5 1/507 Test #5: gauss-1 ............................... Passed 0.43 sec Start 23: rect-1 2/507 Test #6: gauss-2 ............................... Passed 0.45 sec Start 1: black-1 3/507 Test #7: gauss-3 ............................... Passed 0.45 sec Start 2: donut-1 4/507 Test #9: gauss-5 ............................... Passed 0.48 sec Start 3: donut-2 5/507 Test #1: black-1 ............................... Passed 0.45 sec Start 4: gabor-01 6/507 Test #3: donut-2 ............................... Passed 0.48 sec Start 8: gauss-4 7/507 Test #23: rect-1 ................................ Passed 0.93 sec Start 10: gauss-6 8/507 Test #2: donut-1 ............................... Passed 0.87 sec Start 12: gauss-double-1 9/507 Test #4: gabor-01 .............................. Passed 0.48 sec Start 13: gauss-double-2 10/507 Test #8: gauss-4 ............................... Passed 0.47 sec Start 14: gauss-ushort-1 11/507 Test #12: gauss-double-1 ........................ Passed 0.51 sec Start 15: gauss-ushort-2 12/507 Test #10: gauss-6 ............................... Passed 0.57 sec Start 16: lung-1 13/507 Test #13: gauss-double-2 ........................ Passed 0.55 sec Start 21: ptv-1 14/507 Test #15: gauss-ushort-2 ........................ Passed 0.21 sec Start 22: ptv-2 15/507 Test #14: gauss-ushort-1 ........................ Passed 0.60 sec Start 24: rect-2 16/507 Test #22: ptv-2 ................................. Passed 0.34 sec Start 25: rect-2s 17/507 Test #21: ptv-1 ................................. Passed 0.51 sec Start 26: rect-3 18/507 Test #24: rect-2 ................................ Passed 0.72 sec Start 27: rect-4 19/507 Test #25: rect-2s ............................... Passed 0.56 sec Start 28: rect-5 20/507 Test #27: rect-4 ................................ Passed 0.42 sec Start 34: rect-10-roi-1 21/507 Test #26: rect-3 ................................ Passed 0.81 sec Start 37: rect-11-roi 22/507 Test #28: rect-5 ................................ Passed 0.55 sec Start 38: rect-12 23/507 Test #34: rect-10-roi-1 ......................... Passed 0.30 sec Start 39: rect-13 24/507 Test #37: rect-11-roi ........................... Passed 0.50 sec Start 40: rect-14 25/507 Test #39: rect-13 ............................... Passed 0.30 sec Start 41: rect-15 26/507 Test #38: rect-12 ............................... Passed 0.60 sec Start 42: rect-16 27/507 Test #41: rect-15 ............................... Passed 0.41 sec Start 43: rect-17 28/507 Test #16: lung-1 ................................ Passed 2.48 sec Start 51: rectarr-03-a 29/507 Test #40: rect-14 ............................... Passed 0.67 sec Start 56: sphere-1 30/507 Test #43: rect-17 ............................... Passed 0.26 sec Start 57: sphere-2 31/507 Test #42: rect-16 ............................... Passed 0.53 sec Start 58: sphere-3 32/507 Test #51: rectarr-03-a .......................... Passed 0.36 sec Start 60: sphere-5 33/507 Test #56: sphere-1 .............................. Passed 0.38 sec Start 64: vf-zero 34/507 Test #57: sphere-2 .............................. Passed 0.52 sec Start 65: vf-trans-1 35/507 Test #58: sphere-3 .............................. Passed 0.44 sec Start 66: vf-trans-2 36/507 Test #64: vf-zero ............................... Passed 0.29 sec Start 77: bspline-c 37/507 Test #60: sphere-5 .............................. Passed 0.44 sec Start 83: bspline-mi-c-1 38/507 Test #65: vf-trans-1 ............................ Passed 0.25 sec Start 89: drr-a 39/507 Test #66: vf-trans-2 ............................ Passed 0.41 sec Start 174: plm-convert-dicom-a 40/507 Test #174: plm-convert-dicom-a ................... Passed 0.61 sec Start 244: plm-reg-itk-translation 41/507 Test #77: bspline-c ............................. Passed 1.38 sec Start 384: plm-reg-compose 42/507 Test #89: drr-a ................................. Passed 1.28 sec Start 467: plm-xf-convert-d 43/507 Test #244: plm-reg-itk-translation ............... Passed 0.60 sec Start 17: lung-2 44/507 Test #467: plm-xf-convert-d ...................... Passed 0.57 sec Start 31: rect-8 45/507 Test #384: plm-reg-compose ....................... Passed 0.90 sec Start 32: rect-9 46/507 Test #31: rect-8 ................................ Passed 0.46 sec Start 46: rectarr-01-a 47/507 Test #83: bspline-mi-c-1 ........................ Passed 2.64 sec Start 52: rectarr-03 48/507 Test #32: rect-9 ................................ Passed 0.62 sec Start 53: rectarr-04 49/507 Test #46: rectarr-01-a .......................... Passed 0.61 sec Start 67: vf-radial-1 50/507 Test #52: rectarr-03 ............................ Passed 0.74 sec Start 92: drr-b 51/507 Test #53: rectarr-04 ............................ Passed 0.84 sec Start 95: drr-c 52/507 Test #67: vf-radial-1 ........................... Passed 0.66 sec Start 98: fdk-cpu-a 53/507 Test #17: lung-2 ................................ Passed 2.96 sec Start 101: fdk-cpu-d 54/507 Test #92: drr-b ................................. Passed 1.37 sec Start 104: landmark-warp-a 55/507 Test #95: drr-c ................................. Passed 1.36 sec Start 109: landmark-warp-b 56/507 Test #104: landmark-warp-a ....................... Passed 0.70 sec Start 114: landmark-warp-c 57/507 Test #109: landmark-warp-b ....................... Passed 0.47 sec Start 120: plm-add-a 58/507 Test #114: landmark-warp-c ....................... Passed 0.36 sec Start 123: plm-add-b 59/507 Test #120: plm-add-a ............................. Passed 0.38 sec Start 126: plm-add-vf-a 60/507 Test #123: plm-add-b ............................. Passed 0.56 sec Start 129: plm-add-vf-b 61/507 Test #126: plm-add-vf-a .......................... Passed 0.60 sec Start 132: plm-adjust-a 62/507 Test #132: plm-adjust-a .......................... Passed 0.71 sec Start 135: plm-adjust-b 63/507 Test #129: plm-add-vf-b .......................... Passed 0.85 sec Start 138: plm-adjust-c 64/507 Test #135: plm-adjust-b .......................... Passed 0.30 sec Start 141: plm-adjust-d 65/507 Test #138: plm-adjust-c .......................... Passed 0.94 sec Start 144: plm-adjust-e 66/507 Test #141: plm-adjust-d .......................... Passed 0.76 sec Start 147: plm-adjust-f 67/507 Test #98: fdk-cpu-a ............................. Passed 4.70 sec Start 150: plm-adjust-g 68/507 Test #144: plm-adjust-e .......................... Passed 0.34 sec Start 153: plm-adjust-h 69/507 Test #147: plm-adjust-f .......................... Passed 0.45 sec Start 156: plm-adjust-i 70/507 Test #153: plm-adjust-h .......................... Passed 0.29 sec Start 159: plm-boundary-a 71/507 Test #150: plm-adjust-g .......................... Passed 0.56 sec Start 162: plm-boundary-b 72/507 Test #159: plm-boundary-a ........................ Passed 0.16 sec Start 165: plm-boundary-c 73/507 Test #156: plm-adjust-i .......................... Passed 0.68 sec Start 168: plm-boundary-d 74/507 Test #162: plm-boundary-b ........................ Passed 0.48 sec Start 171: plm-boundary-e 75/507 Test #165: plm-boundary-c ........................ Passed 0.45 sec Start 177: plm-convert-dicom-b 76/507 Test #168: plm-boundary-d ........................ Passed 0.39 sec Start 180: plm-convert-dicom-c 77/507 Test #171: plm-boundary-e ........................ Passed 0.55 sec Start 186: plm-convert-dicom-donut-a 78/507 Test #177: plm-convert-dicom-b ................... Passed 0.61 sec Start 189: plm-convert-dicom-donut-b 79/507 Test #189: plm-convert-dicom-donut-b ............. Passed 0.46 sec Start 193: plm-convert-cxt 80/507 Test #186: plm-convert-dicom-donut-a ............. Passed 0.57 sec Start 197: plm-convert-dose-scale 81/507 Test #180: plm-convert-dicom-c ................... Passed 0.90 sec Start 215: plm-fill-a 82/507 Test #197: plm-convert-dose-scale ................ Passed 0.42 sec Start 218: plm-mask-a 83/507 Test #193: plm-convert-cxt ....................... Passed 0.63 sec Start 221: plm-gamma-a 84/507 Test #215: plm-fill-a ............................ Passed 0.57 sec Start 224: plm-gamma-b 85/507 Test #218: plm-mask-a ............................ Passed 0.42 sec Start 231: plm-maximum-a 86/507 Test #224: plm-gamma-b ........................... Passed 0.48 sec Start 234: plm-multiply-a 87/507 Test #231: plm-maximum-a ......................... Passed 0.38 sec Start 237: plm-multiply-vf-a 88/507 Test #221: plm-gamma-a ........................... Passed 0.67 sec Start 241: plm-reg-align-center 89/507 Test #237: plm-multiply-vf-a ..................... Passed 0.35 sec Start 247: plm-reg-itk-rigid-a 90/507 Test #234: plm-multiply-a ........................ Passed 0.42 sec Start 252: plm-reg-itk-similarity 91/507 Test #241: plm-reg-align-center .................. Passed 0.39 sec Start 257: plm-reg-itk-bspline 92/507 Test #247: plm-reg-itk-rigid-a ................... Passed 0.98 sec Start 260: plm-reg-itk-demons 93/507 Test #252: plm-reg-itk-similarity ................ Passed 1.43 sec Start 270: plm-bsp-mse-c 94/507 Test #101: fdk-cpu-d ............................. Passed 9.71 sec Start 273: plm-bsp-mse-h 95/507 Test #270: plm-bsp-mse-c ......................... Passed 1.40 sec Start 276: plm-bsp-mse-k 96/507 Test #273: plm-bsp-mse-h ......................... Passed 1.11 sec Start 279: plm-bsp-mse-l 97/507 Test #260: plm-reg-itk-demons .................... Passed 2.38 sec Start 282: plm-bsp-mi-c 98/507 Test #276: plm-bsp-mse-k ......................... Passed 0.84 sec Start 285: plm-bsp-mi-k 99/507 Test #279: plm-bsp-mse-l ......................... Passed 0.74 sec Start 288: plm-bsp-gm-k 100/507 Test #257: plm-reg-itk-bspline ................... Passed 3.94 sec Start 293: plm-bsp-openmp 101/507 Test #282: plm-bsp-mi-c .......................... Passed 1.23 sec Start 300: plm-bsp-ushort 102/507 Test #285: plm-bsp-mi-k .......................... Passed 1.04 sec Start 303: plm-bsp-double 103/507 Test #293: plm-bsp-openmp ........................ Passed 0.78 sec Start 307: plm-bsp-char-output 104/507 Test #288: plm-bsp-gm-k .......................... Passed 0.89 sec Start 311: plm-bsp-regularize-none 105/507 Test #300: plm-bsp-ushort ........................ Passed 0.41 sec Start 314: plm-bsp-regularize-analytic 106/507 Test #303: plm-bsp-double ........................ Passed 0.59 sec Start 317: plm-bsp-regularize-numeric 107/507 Test #307: plm-bsp-char-output ................... Passed 0.60 sec Start 321: plm-bsp-landmark-b 108/507 Test #311: plm-bsp-regularize-none ............... Passed 0.83 sec Start 324: plm-bsp-landmark-c 109/507 Test #321: plm-bsp-landmark-b .................... Passed 1.19 sec Start 327: plm-bsp-landmark-d 110/507 Test #324: plm-bsp-landmark-c .................... Passed 1.35 sec Start 330: plm-bsp-landmark-e 111/507 Test #327: plm-bsp-landmark-d .................... Passed 0.53 sec Start 333: plm-bsp-dcos-a 112/507 Test #314: plm-bsp-regularize-analytic ........... Passed 2.40 sec Start 336: plm-bsp-dcos-b 113/507 Test #330: plm-bsp-landmark-e .................... Passed 0.75 sec Start 339: plm-bsp-dcos-c 114/507 Test #339: plm-bsp-dcos-c ........................ Passed 1.12 sec Start 342: plm-bsp-dcos-d 115/507 Test #333: plm-bsp-dcos-a ........................ Passed 1.86 sec Start 345: plm-bsp-dcos-e 116/507 Test #336: plm-bsp-dcos-b ........................ Passed 1.83 sec Start 348: plm-bsp-dcos-f 117/507 Test #342: plm-bsp-dcos-d ........................ Passed 0.72 sec Start 351: plm-reg-multi-a 118/507 Test #348: plm-bsp-dcos-f ........................ Passed 0.56 sec Start 354: plm-reg-multi-b 119/507 Test #345: plm-bsp-dcos-e ........................ Passed 1.10 sec Start 357: plm-reg-dv-itk-translation 120/507 Test #357: plm-reg-dv-itk-translation ............ Passed 0.78 sec Start 366: plm-reg-process-a 121/507 Test #351: plm-reg-multi-a ....................... Passed 1.28 sec Start 369: plm-reg-trans-a 122/507 Test #366: plm-reg-process-a ..................... Passed 0.58 sec Start 372: plm-reg-trans-b 123/507 Test #369: plm-reg-trans-a ....................... Passed 2.79 sec Start 375: plm-reg-trans-mi-a 124/507 Test #354: plm-reg-multi-b ....................... Passed 4.01 sec Start 378: plm-reg-autores-a 125/507 Test #317: plm-bsp-regularize-numeric ............ Passed 8.49 sec Start 381: plm-reg-autores-b 126/507 Test #381: plm-reg-autores-b ..................... Passed 0.68 sec Start 385: plm-compose-a 127/507 Test #378: plm-reg-autores-a ..................... Passed 1.26 sec Start 389: plm-compose-b 128/507 Test #385: plm-compose-a ......................... Passed 0.65 sec Start 396: plm-resample-a 129/507 Test #372: plm-reg-trans-b ....................... Passed 3.83 sec Start 399: plm-resample-b 130/507 Test #389: plm-compose-b ......................... Passed 0.59 sec Start 402: plm-resample-c 131/507 Test #399: plm-resample-b ........................ Passed 0.42 sec Start 405: plm-scale-a 132/507 Test #396: plm-resample-a ........................ Passed 0.84 sec Start 408: plm-scale-vf-a 133/507 Test #402: plm-resample-c ........................ Passed 0.59 sec Start 414: plm-thumbnail-a 134/507 Test #405: plm-scale-a ........................... Passed 0.57 sec Start 417: plm-thumbnail-b 135/507 Test #414: plm-thumbnail-a ....................... Passed 0.16 sec Start 420: plm-thumbnail-c 136/507 Test #420: plm-thumbnail-c ....................... Passed 0.15 sec Start 423: plm-union 137/507 Test #417: plm-thumbnail-b ....................... Passed 0.41 sec Start 426: plm-threshold-a 138/507 Test #423: plm-union ............................. Passed 0.16 sec Start 429: plm-threshold-b 139/507 Test #408: plm-scale-vf-a ........................ Passed 0.83 sec Start 432: plm-threshold-c 140/507 Test #426: plm-threshold-a ....................... Passed 0.45 sec Start 438: plm-warp-a 141/507 Test #429: plm-threshold-b ....................... Passed 0.66 sec Start 441: plm-warp-b 142/507 Test #432: plm-threshold-c ....................... Passed 0.80 sec Start 446: plm-warp-c 143/507 Test #438: plm-warp-a ............................ Passed 0.84 sec Start 449: plm-warp-d 144/507 Test #441: plm-warp-b ............................ Passed 0.65 sec Start 452: plm-warp-f 145/507 Test #449: plm-warp-d ............................ Passed 0.54 sec Start 455: plm-warp-g 146/507 Test #452: plm-warp-f ............................ Passed 0.65 sec Start 458: plm-warp-h 147/507 Test #446: plm-warp-c ............................ Passed 1.40 sec Start 461: plm-warp-i 148/507 Test #375: plm-reg-trans-mi-a .................... Passed 5.39 sec Start 464: plm-xf-convert-a 149/507 Test #458: plm-warp-h ............................ Passed 0.62 sec Start 468: plm-xf-convert-d-warp-1 150/507 Test #455: plm-warp-g ............................ Passed 0.90 sec Start 471: plm-xf-convert-d-warp-2 151/507 Test #464: plm-xf-convert-a ...................... Passed 0.51 sec Start 477: xf-invert-vf-zero-1 152/507 Test #461: plm-warp-i ............................ Passed 0.69 sec Start 480: xf-invert-vf-trans-1 153/507 Test #468: plm-xf-convert-d-warp-1 ............... Passed 0.54 sec Start 487: proton-dose-1 154/507 Test #480: xf-invert-vf-trans-1 .................. Passed 0.60 sec Start 490: proton-dose-4a 155/507 Test #477: xf-invert-vf-zero-1 ................... Passed 0.79 sec Start 493: proton-dose-4d 156/507 Test #471: plm-xf-convert-d-warp-2 ............... Passed 1.54 sec Start 496: proton-dose-5a 157/507 Test #487: proton-dose-1 ......................... Passed 5.23 sec Start 499: proton-dose-5d 158/507 Test #490: proton-dose-4a ........................ Passed 7.60 sec Start 502: proton-dose-6a 159/507 Test #496: proton-dose-5a ........................ Passed 7.02 sec Start 33: rect-10 160/507 Test #493: proton-dose-4d ........................ Passed 8.10 sec Start 36: rect-11 161/507 Test #33: rect-10 ............................... Passed 0.62 sec Start 45: rect-19 162/507 Test #45: rect-19 ............................... Passed 0.58 sec Start 47: rectarr-01 163/507 Test #36: rect-11 ............................... Passed 0.66 sec Start 48: rectarr-02 164/507 Test #48: rectarr-02 ............................ Passed 0.55 sec Start 49: rectarr-m-01 165/507 Test #47: rectarr-01 ............................ Passed 0.60 sec Start 50: rectarr-m-02 166/507 Test #50: rectarr-m-02 .......................... Passed 0.51 sec Start 55: roi-1 167/507 Test #49: rectarr-m-01 .......................... Passed 0.60 sec Start 59: sphere-4 168/507 Test #55: roi-1 ................................. Passed 0.35 sec Start 69: vf-zero-stats 169/507 Test #59: sphere-4 .............................. Passed 0.32 sec Start 71: vf-trans-1-stats 170/507 Test #69: vf-zero-stats ......................... Passed 0.51 sec Start 73: vf-trans-2-stats 171/507 Test #71: vf-trans-1-stats ...................... Passed 0.58 sec Start 75: vf-radial-1-stats 172/507 Test #73: vf-trans-2-stats ...................... Passed 0.44 sec Start 79: bspline-g 173/507 Test #75: vf-radial-1-stats ..................... Passed 0.74 sec Start 81: bspline-h 174/507 Test #81: bspline-h ............................. Passed 1.45 sec Start 85: bspline-mi-c-2 175/507 Test #79: bspline-g ............................. Passed 1.97 sec Start 87: demons-a 176/507 Test #87: demons-a .............................. Passed 2.05 sec Start 90: drr-a-stats 177/507 Test #85: bspline-mi-c-2 ........................ Passed 2.62 sec Start 93: drr-b-stats 178/507 Test #90: drr-a-stats ........................... Passed 0.49 sec Start 96: drr-c-stats 179/507 Test #93: drr-b-stats ........................... Passed 0.25 sec Start 99: fdk-cpu-a-stats 180/507 Test #96: drr-c-stats ........................... Passed 0.34 sec Start 102: fdk-cpu-d-stats 181/507 Test #499: proton-dose-5d ........................ Passed 11.81 sec Start 105: landmark-warp-a-stats-1 182/507 Test #99: fdk-cpu-a-stats ....................... Passed 0.90 sec Start 107: landmark-warp-a-stats-2 183/507 Test #105: landmark-warp-a-stats-1 ............... Passed 0.68 sec Start 110: landmark-warp-b-stats-1 184/507 Test #107: landmark-warp-a-stats-2 ............... Passed 0.55 sec Start 112: landmark-warp-b-stats-2 185/507 Test #102: fdk-cpu-d-stats ....................... Passed 1.39 sec Start 115: landmark-warp-c-stats-1 186/507 Test #110: landmark-warp-b-stats-1 ............... Passed 0.59 sec Start 117: landmark-warp-c-stats-2 187/507 Test #502: proton-dose-6a ........................ Passed 10.50 sec Start 121: plm-add-a-stats 188/507 Test #112: landmark-warp-b-stats-2 ............... Passed 0.73 sec Start 124: plm-add-b-stats 189/507 Test #115: landmark-warp-c-stats-1 ............... Passed 0.84 sec Start 127: plm-add-vf-a-stats 190/507 Test #121: plm-add-a-stats ....................... Passed 0.69 sec Start 130: plm-add-vf-b-stats 191/507 Test #117: landmark-warp-c-stats-2 ............... Passed 0.99 sec Start 133: plm-adjust-a-stats 192/507 Test #124: plm-add-b-stats ....................... Passed 0.76 sec Start 136: plm-adjust-b-stats 193/507 Test #127: plm-add-vf-a-stats .................... Passed 0.86 sec Start 139: plm-adjust-c-stats 194/507 Test #133: plm-adjust-a-stats .................... Passed 0.60 sec Start 142: plm-adjust-d-stats 195/507 Test #130: plm-add-vf-b-stats .................... Passed 0.70 sec Start 145: plm-adjust-e-stats 196/507 Test #136: plm-adjust-b-stats .................... Passed 0.72 sec Start 148: plm-adjust-f-stats 197/507 Test #139: plm-adjust-c-stats .................... Passed 0.68 sec Start 151: plm-adjust-g-stats 198/507 Test #145: plm-adjust-e-stats .................... Passed 0.47 sec Start 154: plm-adjust-h-stats 199/507 Test #142: plm-adjust-d-stats .................... Passed 0.65 sec Start 157: plm-adjust-i-stats 200/507 Test #148: plm-adjust-f-stats .................... Passed 0.58 sec Start 160: plm-boundary-a-stats 201/507 Test #151: plm-adjust-g-stats .................... Passed 0.52 sec Start 163: plm-boundary-b-stats 202/507 Test #157: plm-adjust-i-stats .................... Passed 0.55 sec Start 166: plm-boundary-c-stats 203/507 Test #154: plm-adjust-h-stats .................... Passed 0.78 sec Start 169: plm-boundary-d-stats 204/507 Test #160: plm-boundary-a-stats .................. Passed 0.66 sec Start 172: plm-boundary-e-stats 205/507 Test #166: plm-boundary-c-stats .................. Passed 0.51 sec Start 175: plm-convert-dicom-a-stats 206/507 Test #163: plm-boundary-b-stats .................. Passed 0.80 sec Start 178: plm-convert-dicom-b-stats 207/507 Test #172: plm-boundary-e-stats .................. Passed 0.33 sec Start 181: plm-convert-dicom-c-stats 208/507 Test #169: plm-boundary-d-stats .................. Passed 0.57 sec Start 187: plm-convert-dicom-donut-a-stats 209/507 Test #178: plm-convert-dicom-b-stats ............. Passed 0.34 sec Start 190: plm-convert-dicom-donut-b-stats 210/507 Test #181: plm-convert-dicom-c-stats ............. Passed 0.34 sec Start 194: plm-convert-cxt-stats 211/507 Test #187: plm-convert-dicom-donut-a-stats ....... Passed 0.55 sec Start 198: plm-convert-dose-scale-stats 212/507 Test #190: plm-convert-dicom-donut-b-stats ....... Passed 0.49 sec Start 200: plm-dice-a 213/507 Test #175: plm-convert-dicom-a-stats ............. Passed 1.02 sec Start 202: plm-dice-b 214/507 Test #194: plm-convert-cxt-stats ................. Passed 0.60 sec Start 204: plm-dice-c 215/507 Test #198: plm-convert-dose-scale-stats .......... Passed 0.52 sec Start 209: plm-dvh-a 216/507 Test #200: plm-dice-a ............................ Passed 0.49 sec Start 212: plm-dvh-b 217/507 Test #202: plm-dice-b ............................ Passed 0.64 sec Start 216: plm-fill-a-stats 218/507 Test #204: plm-dice-c ............................ Passed 0.73 sec Start 219: plm-mask-a-stats 219/507 Test #209: plm-dvh-a ............................. Passed 0.63 sec Start 222: plm-gamma-a-stats 220/507 Test #212: plm-dvh-b ............................. Passed 0.63 sec Start 225: plm-gamma-b-stats 221/507 Test #216: plm-fill-a-stats ...................... Passed 0.41 sec Start 227: plm-gamma-c 222/507 Test #222: plm-gamma-a-stats ..................... Passed 0.66 sec Start 229: plm-gamma-d 223/507 Test #219: plm-mask-a-stats ...................... Passed 0.77 sec Start 232: plm-maximum-a-stats 224/507 Test #227: plm-gamma-c ........................... Passed 0.63 sec Start 235: plm-multiply-a-stats 225/507 Test #225: plm-gamma-b-stats ..................... Passed 0.85 sec Start 238: plm-multiply-vf-a-stats 226/507 Test #232: plm-maximum-a-stats ................... Passed 0.37 sec Start 242: plm-reg-align-center-stats 227/507 Test #238: plm-multiply-vf-a-stats ............... Passed 0.40 sec Start 245: plm-reg-itk-translation-stats 228/507 Test #229: plm-gamma-d ........................... Passed 0.77 sec Start 248: plm-reg-itk-rigid-a-stats-1 229/507 Test #235: plm-multiply-a-stats .................. Passed 0.68 sec Start 250: plm-reg-itk-rigid-a-stats-2 230/507 Test #242: plm-reg-align-center-stats ............ Passed 0.59 sec Start 253: plm-reg-itk-similarity-stats-1 231/507 Test #248: plm-reg-itk-rigid-a-stats-1 ........... Passed 0.47 sec Start 255: plm-reg-itk-similarity-stats-2 232/507 Test #245: plm-reg-itk-translation-stats ......... Passed 0.58 sec Start 258: plm-reg-itk-bspline-stats-1 233/507 Test #253: plm-reg-itk-similarity-stats-1 ........ Passed 0.53 sec Start 262: plm-reg-itk-demons-stats-2 234/507 Test #250: plm-reg-itk-rigid-a-stats-2 ........... Passed 0.70 sec Start 264: plm-reg-itk-demons-diff 235/507 Test #255: plm-reg-itk-similarity-stats-2 ........ Passed 0.46 sec Start 266: plm-reg-itk-demons-logd 236/507 Test #258: plm-reg-itk-bspline-stats-1 ........... Passed 0.46 sec Start 268: plm-reg-itk-demons-sym-logd 237/507 Test #262: plm-reg-itk-demons-stats-2 ............ Passed 0.91 sec Start 271: plm-bsp-mse-c-stats 238/507 Test #271: plm-bsp-mse-c-stats ................... Passed 0.69 sec Start 274: plm-bsp-mse-h-stats 239/507 Test #274: plm-bsp-mse-h-stats ................... Passed 0.48 sec Start 277: plm-bsp-mse-k-stats 240/507 Test #277: plm-bsp-mse-k-stats ................... Passed 0.40 sec Start 280: plm-bsp-mse-l-stats 241/507 Test #280: plm-bsp-mse-l-stats ................... Passed 0.23 sec Start 283: plm-bsp-mi-c-stats 242/507 Test #266: plm-reg-itk-demons-logd ............... Passed 2.87 sec Start 286: plm-bsp-mi-k-stats 243/507 Test #283: plm-bsp-mi-c-stats .................... Passed 0.37 sec Start 289: plm-bsp-gm-k-stats 244/507 Test #264: plm-reg-itk-demons-diff ............... Passed 3.17 sec Start 291: plm-bsp-sm-multi-a 245/507 Test #286: plm-bsp-mi-k-stats .................... Passed 0.19 sec Start 294: plm-bsp-openmp-stats 246/507 Test #289: plm-bsp-gm-k-stats .................... Passed 0.35 sec Start 296: plm-bsp-resume 247/507 Test #294: plm-bsp-openmp-stats .................. Passed 0.31 sec Start 298: plm-bsp-logfile 248/507 Test #291: plm-bsp-sm-multi-a .................... Passed 0.53 sec Start 301: plm-bsp-ushort-stats 249/507 Test #296: plm-bsp-resume ........................ Passed 0.48 sec Start 304: plm-bsp-double-stats 250/507 Test #268: plm-reg-itk-demons-sym-logd ........... Passed 3.64 sec Start 308: plm-bsp-char-output-stats 251/507 Test #301: plm-bsp-ushort-stats .................. Passed 0.27 sec Start 310: plm-bsp-rect 252/507 Test #304: plm-bsp-double-stats .................. Passed 0.35 sec Start 312: plm-bsp-regularize-none-stats 253/507 Test #298: plm-bsp-logfile ....................... Passed 0.84 sec Start 315: plm-bsp-regularize-analytic-stats 254/507 Test #312: plm-bsp-regularize-none-stats ......... Passed 0.36 sec Start 318: plm-bsp-regularize-numeric-stats 255/507 Test #310: plm-bsp-rect .......................... Passed 0.79 sec Start 322: plm-bsp-landmark-b-stats 256/507 Test #308: plm-bsp-char-output-stats ............. Passed 0.84 sec Start 325: plm-bsp-landmark-c-stats 257/507 Test #315: plm-bsp-regularize-analytic-stats ..... Passed 0.57 sec Start 328: plm-bsp-landmark-d-stats 258/507 Test #318: plm-bsp-regularize-numeric-stats ...... Passed 0.37 sec Start 331: plm-bsp-landmark-e-stats 259/507 Test #325: plm-bsp-landmark-c-stats .............. Passed 0.38 sec Start 334: plm-bsp-dcos-a-stats 260/507 Test #322: plm-bsp-landmark-b-stats .............. Passed 0.61 sec Start 337: plm-bsp-dcos-b-stats 261/507 Test #331: plm-bsp-landmark-e-stats .............. Passed 0.55 sec Start 340: plm-bsp-dcos-c-stats 262/507 Test #334: plm-bsp-dcos-a-stats .................. Passed 0.48 sec Start 343: plm-bsp-dcos-d-stats 263/507 Test #328: plm-bsp-landmark-d-stats .............. Passed 0.84 sec Start 346: plm-bsp-dcos-e-stats 264/507 Test #340: plm-bsp-dcos-c-stats .................. Passed 0.29 sec Start 349: plm-bsp-dcos-f-stats 265/507 Test #343: plm-bsp-dcos-d-stats .................. Passed 0.22 sec Start 352: plm-reg-multi-a-stats 266/507 Test #337: plm-bsp-dcos-b-stats .................. Passed 0.72 sec Start 355: plm-reg-multi-b-stats 267/507 Test #352: plm-reg-multi-a-stats ................. Passed 0.22 sec Start 358: plm-reg-dv-itk-translation-stats 268/507 Test #349: plm-bsp-dcos-f-stats .................. Passed 0.32 sec Start 367: plm-reg-process-a-stats 269/507 Test #346: plm-bsp-dcos-e-stats .................. Passed 0.47 sec Start 370: plm-reg-trans-a-stats 270/507 Test #370: plm-reg-trans-a-stats ................. Passed 0.37 sec Start 373: plm-reg-trans-b-stats 271/507 Test #358: plm-reg-dv-itk-translation-stats ...... Passed 0.57 sec Start 376: plm-reg-trans-mi-a-stats 272/507 Test #355: plm-reg-multi-b-stats ................. Passed 0.65 sec Start 379: plm-reg-autores-a-stats 273/507 Test #367: plm-reg-process-a-stats ............... Passed 0.85 sec Start 382: plm-reg-autores-b-stats 274/507 Test #376: plm-reg-trans-mi-a-stats .............. Passed 0.39 sec Start 387: plm-compose-a-stats 275/507 Test #379: plm-reg-autores-a-stats ............... Passed 0.33 sec Start 391: plm-compose-b-stats 276/507 Test #373: plm-reg-trans-b-stats ................. Passed 0.52 sec Start 393: plm-compose-c 277/507 Test #382: plm-reg-autores-b-stats ............... Passed 0.23 sec Start 397: plm-resample-a-stats 278/507 Test #387: plm-compose-a-stats ................... Passed 0.19 sec Start 400: plm-resample-b-stats 279/507 Test #391: plm-compose-b-stats ................... Passed 0.26 sec Start 403: plm-resample-c-stats 280/507 Test #397: plm-resample-a-stats .................. Passed 0.23 sec Start 406: plm-scale-a-stats 281/507 Test #393: plm-compose-c ......................... Passed 0.33 sec Start 409: plm-scale-vf-a-stats 282/507 Test #403: plm-resample-c-stats .................. Passed 0.24 sec Start 411: plm-sift-a 283/507 Test #409: plm-scale-vf-a-stats .................. Passed 0.19 sec Start 415: plm-thumbnail-a-stats 284/507 Test #400: plm-resample-b-stats .................. Passed 0.54 sec Start 418: plm-thumbnail-b-stats 285/507 Test #406: plm-scale-a-stats ..................... Passed 0.77 sec Start 421: plm-thumbnail-c-stats 286/507 Test #415: plm-thumbnail-a-stats ................. Passed 0.59 sec Start 424: plm-union-stats 287/507 Test #418: plm-thumbnail-b-stats ................. Passed 0.62 sec Start 427: plm-threshold-a-stats 288/507 Test #424: plm-union-stats ....................... Passed 0.33 sec Start 430: plm-threshold-b-stats 289/507 Test #427: plm-threshold-a-stats ................. Passed 0.39 sec Start 433: plm-threshold-c-stats 290/507 Test #421: plm-thumbnail-c-stats ................. Passed 0.63 sec Start 439: plm-warp-a-stats 291/507 Test #430: plm-threshold-b-stats ................. Passed 0.42 sec Start 442: plm-warp-b-stats-1 292/507 Test #433: plm-threshold-c-stats ................. Passed 0.36 sec Start 444: plm-warp-b-stats-2 293/507 Test #439: plm-warp-a-stats ...................... Passed 0.30 sec Start 447: plm-warp-c-stats 294/507 Test #442: plm-warp-b-stats-1 .................... Passed 0.27 sec Start 450: plm-warp-d-stats 295/507 Test #444: plm-warp-b-stats-2 .................... Passed 0.18 sec Start 453: plm-warp-f-stats-1 296/507 Test #447: plm-warp-c-stats ...................... Passed 0.19 sec Start 456: plm-warp-g-stats-1 297/507 Test #450: plm-warp-d-stats ...................... Passed 0.33 sec Start 459: plm-warp-h-stats-1 298/507 Test #453: plm-warp-f-stats-1 .................... Passed 0.27 sec Start 462: plm-warp-i-stats-1 299/507 Test #456: plm-warp-g-stats-1 .................... Passed 0.27 sec Start 465: plm-xf-convert-b 300/507 Test #459: plm-warp-h-stats-1 .................... Passed 0.19 sec Start 469: plm-xf-convert-d-warp-1-stats 301/507 Test #462: plm-warp-i-stats-1 .................... Passed 0.21 sec Start 472: plm-xf-convert-d-warp-2-stats 302/507 Test #465: plm-xf-convert-b ...................... Passed 0.31 sec Start 478: xf-invert-vf-zero-1-stats 303/507 Test #469: plm-xf-convert-d-warp-1-stats ......... Passed 0.29 sec Start 481: xf-invert-vf-trans-1-stats 304/507 Test #478: xf-invert-vf-zero-1-stats ............. Passed 0.28 sec Start 483: xf-invert-vrs-a 305/507 Test #472: plm-xf-convert-d-warp-2-stats ......... Passed 0.44 sec Start 485: xf-invert-vrs-b 306/507 Test #483: xf-invert-vrs-a ....................... Passed 0.40 sec Start 488: proton-dose-1-stats 307/507 Test #485: xf-invert-vrs-b ....................... Passed 0.47 sec Start 491: proton-dose-4a-stats 308/507 Test #481: xf-invert-vf-trans-1-stats ............ Passed 0.69 sec Start 494: proton-dose-4d-stats 309/507 Test #488: proton-dose-1-stats ................... Passed 0.23 sec Start 497: proton-dose-5a-stats 310/507 Test #494: proton-dose-4d-stats .................. Passed 0.25 sec Start 500: proton-dose-5d-stats 311/507 Test #497: proton-dose-5a-stats .................. Passed 0.29 sec Start 503: proton-dose-6a-stats 312/507 Test #491: proton-dose-4a-stats .................. Passed 0.52 sec Start 505: wed-a 313/507 Test #500: proton-dose-5d-stats .................. Passed 0.32 sec Start 11: gauss-7 314/507 Test #503: proton-dose-6a-stats .................. Passed 0.48 sec Start 18: gw-lung-a 315/507 Test #11: gauss-7 ............................... Passed 0.41 sec Start 19: gw-lung-b 316/507 Test #18: gw-lung-a ............................. Passed 0.55 sec Start 20: gw-lung-c 317/507 Test #19: gw-lung-b ............................. Passed 0.44 sec Start 29: rect-6 318/507 Test #29: rect-6 ................................ Passed 0.64 sec Start 30: rect-7 319/507 Test #20: gw-lung-c ............................. Passed 0.72 sec Start 35: rect-10-roi-2 320/507 Test #30: rect-7 ................................ Passed 0.26 sec Start 44: rect-18 321/507 Test #35: rect-10-roi-2 ......................... Passed 0.79 sec Start 54: rgc-1 322/507 Test #44: rect-18 ............................... Passed 0.63 sec Start 61: xramp-1 323/507 Test #61: xramp-1 ............................... Passed 0.31 sec Start 62: yramp-1 324/507 Test #54: rgc-1 ................................. Passed 0.48 sec Start 63: zramp-1 325/507 Test #62: yramp-1 ............................... Passed 0.44 sec Start 68: vf-gaussian-1 326/507 Test #63: zramp-1 ............................... Passed 0.40 sec Start 70: vf-zero-check 327/507 Test #70: vf-zero-check ......................... Passed 0.06 sec Start 72: vf-trans-1-check 328/507 Test #72: vf-trans-1-check ...................... Passed 0.10 sec Start 74: vf-trans-2-check 329/507 Test #74: vf-trans-2-check ...................... Passed 0.06 sec Start 76: vf-radial-1-check 330/507 Test #76: vf-radial-1-check ..................... Passed 0.09 sec Start 78: bspline-c-check 331/507 Test #68: vf-gaussian-1 ......................... Passed 0.48 sec Start 80: bspline-g-check 332/507 Test #80: bspline-g-check ....................... Passed 0.04 sec Start 82: bspline-h-check 333/507 Test #82: bspline-h-check ....................... Passed 0.06 sec Start 84: bspline-mi-c-1-check 334/507 Test #78: bspline-c-check ....................... Passed 0.18 sec Start 86: bspline-mi-c-2-check 335/507 Test #84: bspline-mi-c-1-check .................. Passed 0.05 sec Start 88: demons-a-check 336/507 Test #88: demons-a-check ........................ Passed 0.06 sec Start 91: drr-a-check 337/507 Test #86: bspline-mi-c-2-check .................. Passed 0.11 sec Start 94: drr-b-check 338/507 Test #94: drr-b-check ........................... Passed 0.05 sec Start 97: drr-c-check 339/507 Test #91: drr-a-check ........................... Passed 0.06 sec Start 100: fdk-cpu-a-check 340/507 Test #97: drr-c-check ........................... Passed 0.04 sec Start 103: fdk-cpu-d-check 341/507 Test #100: fdk-cpu-a-check ....................... Passed 0.06 sec Start 106: landmark-warp-a-check-1 342/507 Test #106: landmark-warp-a-check-1 ............... Passed 0.03 sec Start 108: landmark-warp-a-check-2 343/507 Test #108: landmark-warp-a-check-2 ............... Passed 0.03 sec Start 111: landmark-warp-b-check-1 344/507 Test #111: landmark-warp-b-check-1 ............... Passed 0.03 sec Start 113: landmark-warp-b-check-2 345/507 Test #113: landmark-warp-b-check-2 ............... Passed 0.03 sec Start 116: landmark-warp-c-check-1 346/507 Test #103: fdk-cpu-d-check ....................... Passed 0.15 sec Start 118: landmark-warp-c-check-2 347/507 Test #116: landmark-warp-c-check-1 ............... Passed 0.07 sec Start 119: landmark-warp-d 348/507 Test #118: landmark-warp-c-check-2 ............... Passed 0.09 sec Start 122: plm-add-a-check 349/507 Test #122: plm-add-a-check ....................... Passed 0.05 sec Start 125: plm-add-b-check 350/507 Test #125: plm-add-b-check ....................... Passed 0.08 sec Start 128: plm-add-vf-a-check 351/507 Test #128: plm-add-vf-a-check .................... Passed 0.08 sec Start 131: plm-add-vf-b-check 352/507 Test #131: plm-add-vf-b-check .................... Passed 0.04 sec Start 134: plm-adjust-a-check 353/507 Test #134: plm-adjust-a-check .................... Passed 0.07 sec Start 137: plm-adjust-b-check 354/507 Test #137: plm-adjust-b-check .................... Passed 0.09 sec Start 140: plm-adjust-c-check 355/507 Test #140: plm-adjust-c-check .................... Passed 0.07 sec Start 143: plm-adjust-d-check 356/507 Test #143: plm-adjust-d-check .................... Passed 0.04 sec Start 146: plm-adjust-e-check 357/507 Test #119: landmark-warp-d ....................... Passed 0.60 sec Start 149: plm-adjust-f-check 358/507 Test #146: plm-adjust-e-check .................... Passed 0.05 sec Start 152: plm-adjust-g-check 359/507 Test #149: plm-adjust-f-check .................... Passed 0.06 sec Start 155: plm-adjust-h-check 360/507 Test #155: plm-adjust-h-check .................... Passed 0.16 sec Start 158: plm-adjust-i-check 361/507 Test #152: plm-adjust-g-check .................... Passed 0.17 sec Start 161: plm-boundary-a-check 362/507 Test #161: plm-boundary-a-check .................. Passed 0.06 sec Start 164: plm-boundary-b-check 363/507 Test #158: plm-adjust-i-check .................... Passed 0.10 sec Start 167: plm-boundary-c-check 364/507 Test #164: plm-boundary-b-check .................. Passed 0.05 sec Start 170: plm-boundary-d-check 365/507 Test #167: plm-boundary-c-check .................. Passed 0.10 sec Start 173: plm-boundary-e-check 366/507 Test #170: plm-boundary-d-check .................. Passed 0.11 sec Start 176: plm-convert-dicom-a-check 367/507 Test #173: plm-boundary-e-check .................. Passed 0.08 sec Start 179: plm-convert-dicom-b-check 368/507 Test #179: plm-convert-dicom-b-check ............. Passed 0.05 sec Start 182: plm-convert-dicom-c-check 369/507 Test #176: plm-convert-dicom-a-check ............. Passed 0.13 sec Start 183: plm-convert-dicom-d 370/507 Test #182: plm-convert-dicom-c-check ............. Passed 0.05 sec Start 184: plm-convert-dicom-e 371/507 Test #183: plm-convert-dicom-d ................... Passed 0.27 sec Start 185: plm-convert-dicom-f 372/507 Test #184: plm-convert-dicom-e ................... Passed 0.67 sec Start 188: plm-convert-dicom-donut-a-check 373/507 Test #188: plm-convert-dicom-donut-a-check ....... Passed 0.04 sec Start 191: plm-convert-dicom-donut-b-check 374/507 Test #191: plm-convert-dicom-donut-b-check ....... Passed 0.04 sec Start 192: plm-convert-dicom-donut-c 375/507 Test #185: plm-convert-dicom-f ................... Passed 0.55 sec Start 195: plm-convert-cxt-check 376/507 Test #195: plm-convert-cxt-check ................. Passed 0.03 sec Start 196: plm-convert-prefix-fcsv 377/507 Test #192: plm-convert-dicom-donut-c ............. Passed 0.65 sec Start 199: plm-convert-dose-scale-check 378/507 Test #199: plm-convert-dose-scale-check .......... Passed 0.05 sec Start 201: plm-dice-a-check-1 379/507 Test #201: plm-dice-a-check-1 .................... Passed 0.05 sec Start 203: plm-dice-b-check-1 380/507 Test #203: plm-dice-b-check-1 .................... Passed 0.04 sec Start 205: plm-dice-c-check-1 381/507 Test #205: plm-dice-c-check-1 .................... Passed 0.02 sec Start 206: plm-dice-c-check-2 382/507 Test #206: plm-dice-c-check-2 .................... Passed 0.08 sec Start 207: plm-dmap-a 383/507 Test #196: plm-convert-prefix-fcsv ............... Passed 0.83 sec Start 208: plm-dmap-b 384/507 Test #208: plm-dmap-b ............................ Passed 0.28 sec Start 210: plm-dvh-a-check-1 385/507 Test #210: plm-dvh-a-check-1 ..................... Passed 0.05 sec Start 211: plm-dvh-a-check-2 386/507 Test #211: plm-dvh-a-check-2 ..................... Passed 0.07 sec Start 213: plm-dvh-b-check-1 387/507 Test #207: plm-dmap-a ............................ Passed 0.48 sec Start 214: plm-dvh-b-check-2 388/507 Test #213: plm-dvh-b-check-1 ..................... Passed 0.09 sec Start 217: plm-fill-a-check 389/507 Test #214: plm-dvh-b-check-2 ..................... Passed 0.05 sec Start 220: plm-mask-a-check 390/507 Test #220: plm-mask-a-check ...................... Passed 0.05 sec Start 223: plm-gamma-a-check 391/507 Test #223: plm-gamma-a-check ..................... Passed 0.03 sec Start 226: plm-gamma-b-check 392/507 Test #217: plm-fill-a-check ...................... Passed 0.18 sec Start 228: plm-gamma-c-check 393/507 Test #226: plm-gamma-b-check ..................... Passed 0.16 sec Start 230: plm-gamma-d-check 394/507 Test #228: plm-gamma-c-check ..................... Passed 0.14 sec Start 233: plm-maximum-a-check 395/507 Test #233: plm-maximum-a-check ................... Passed 0.07 sec Start 236: plm-multiply-a-check 396/507 Test #230: plm-gamma-d-check ..................... Passed 0.17 sec Start 239: plm-multiply-vf-a-check 397/507 Test #239: plm-multiply-vf-a-check ............... Passed 0.07 sec Start 240: plm-usage 398/507 Test #236: plm-multiply-a-check .................. Passed 0.09 sec Start 243: plm-reg-align-center-check 399/507 Test #243: plm-reg-align-center-check ............ Passed 0.05 sec Start 246: plm-reg-itk-translation-check 400/507 Test #246: plm-reg-itk-translation-check ......... Passed 0.06 sec Start 249: plm-reg-itk-rigid-a-check-1 401/507 Test #249: plm-reg-itk-rigid-a-check-1 ........... Passed 0.04 sec Start 251: plm-reg-itk-rigid-a-check-2 402/507 Test #251: plm-reg-itk-rigid-a-check-2 ........... Passed 0.07 sec Start 254: plm-reg-itk-similarity-check-1 403/507 Test #254: plm-reg-itk-similarity-check-1 ........ Passed 0.05 sec Start 256: plm-reg-itk-similarity-check-2 404/507 Test #240: plm-usage ............................. Passed 0.31 sec Start 259: plm-reg-itk-bspline-check-1 405/507 Test #256: plm-reg-itk-similarity-check-2 ........ Passed 0.10 sec Start 261: plm-reg-itk-demons-check-1 406/507 Test #259: plm-reg-itk-bspline-check-1 ........... Passed 0.14 sec Start 263: plm-reg-itk-demons-check-2 407/507 Test #263: plm-reg-itk-demons-check-2 ............ Passed 0.04 sec Start 265: plm-reg-itk-demons-diff-check-1 408/507 Test #261: plm-reg-itk-demons-check-1 ............ Passed 0.14 sec Start 267: plm-reg-itk-demons-logd-check-1 409/507 Test #265: plm-reg-itk-demons-diff-check-1 ....... Passed 0.06 sec Start 269: plm-reg-itk-demons-sym-logd-check-1 410/507 Test #267: plm-reg-itk-demons-logd-check-1 ....... Passed 0.06 sec Start 272: plm-bsp-mse-c-check 411/507 Test #272: plm-bsp-mse-c-check ................... Passed 0.06 sec Start 275: plm-bsp-mse-h-check 412/507 Test #269: plm-reg-itk-demons-sym-logd-check-1 ... Passed 0.10 sec Start 278: plm-bsp-mse-k-check 413/507 Test #275: plm-bsp-mse-h-check ................... Passed 0.02 sec Start 281: plm-bsp-mse-l-check 414/507 Test #281: plm-bsp-mse-l-check ................... Passed 0.03 sec Start 284: plm-bsp-mi-c-check 415/507 Test #278: plm-bsp-mse-k-check ................... Passed 0.07 sec Start 287: plm-bsp-mi-k-check 416/507 Test #284: plm-bsp-mi-c-check .................... Passed 0.05 sec Start 290: plm-bsp-gm-k-check 417/507 Test #287: plm-bsp-mi-k-check .................... Passed 0.06 sec Start 292: plm-bsp-sm-multi-a-stats 418/507 Test #505: wed-a ................................. Passed 8.99 sec Start 295: plm-bsp-openmp-check 419/507 Test #290: plm-bsp-gm-k-check .................... Passed 0.13 sec Start 297: plm-bsp-resume-stats 420/507 Test #295: plm-bsp-openmp-check .................. Passed 0.09 sec Start 299: plm-bsp-logfile-check 421/507 Test #299: plm-bsp-logfile-check ................. Passed 0.09 sec Start 302: plm-bsp-ushort-check 422/507 Test #302: plm-bsp-ushort-check .................. Passed 0.06 sec Start 305: plm-bsp-double-check 423/507 Test #305: plm-bsp-double-check .................. Passed 0.12 sec Start 306: plm-bsp-itk-output 424/507 Test #292: plm-bsp-sm-multi-a-stats .............. Passed 0.49 sec Start 309: plm-bsp-char-output-check 425/507 Test #297: plm-bsp-resume-stats .................. Passed 0.44 sec Start 313: plm-bsp-regularize-none-check 426/507 Test #309: plm-bsp-char-output-check ............. Passed 0.05 sec Start 316: plm-bsp-regularize-analytic-check 427/507 Test #313: plm-bsp-regularize-none-check ......... Passed 0.03 sec Start 319: plm-bsp-regularize-numeric-check 428/507 Test #316: plm-bsp-regularize-analytic-check ..... Passed 0.05 sec Start 320: plm-bsp-landmark-a 429/507 Test #319: plm-bsp-regularize-numeric-check ...... Passed 0.06 sec Start 323: plm-bsp-landmark-b-check 430/507 Test #323: plm-bsp-landmark-b-check .............. Passed 0.03 sec Start 326: plm-bsp-landmark-c-check 431/507 Test #326: plm-bsp-landmark-c-check .............. Passed 0.12 sec Start 329: plm-bsp-landmark-d-check 432/507 Test #306: plm-bsp-itk-output .................... Passed 0.38 sec Start 332: plm-bsp-landmark-e-check 433/507 Test #329: plm-bsp-landmark-d-check .............. Passed 0.07 sec Start 335: plm-bsp-dcos-a-check 434/507 Test #332: plm-bsp-landmark-e-check .............. Passed 0.06 sec Start 338: plm-bsp-dcos-b-check 435/507 Test #335: plm-bsp-dcos-a-check .................. Passed 0.05 sec Start 341: plm-bsp-dcos-c-check 436/507 Test #338: plm-bsp-dcos-b-check .................. Passed 0.06 sec Start 344: plm-bsp-dcos-d-check 437/507 Test #341: plm-bsp-dcos-c-check .................. Passed 0.06 sec Start 347: plm-bsp-dcos-e-check 438/507 Test #344: plm-bsp-dcos-d-check .................. Passed 0.11 sec Start 350: plm-bsp-dcos-f-check 439/507 Test #347: plm-bsp-dcos-e-check .................. Passed 0.08 sec Start 353: plm-reg-multi-a-check 440/507 Test #350: plm-bsp-dcos-f-check .................. Passed 0.06 sec Start 356: plm-reg-multi-b-check 441/507 Test #353: plm-reg-multi-a-check ................. Passed 0.06 sec Start 359: plm-reg-dv-itk-translation-check 442/507 Test #356: plm-reg-multi-b-check ................. Passed 0.06 sec Start 360: plm-reg-roi-a 443/507 Test #359: plm-reg-dv-itk-translation-check ...... Passed 0.09 sec Start 361: plm-reg-roi-b 444/507 Test #320: plm-bsp-landmark-a .................... Passed 0.81 sec Start 362: plm-reg-roi-c 445/507 Test #361: plm-reg-roi-b ......................... Passed 0.67 sec Start 363: plm-reg-roi-d 446/507 Test #362: plm-reg-roi-c ......................... Passed 0.71 sec Start 364: plm-reg-roi-e 447/507 Test #360: plm-reg-roi-a ......................... Passed 1.06 sec Start 365: plm-reg-stiffness-a 448/507 Test #363: plm-reg-roi-d ......................... Passed 1.39 sec Start 368: plm-reg-process-a-check 449/507 Test #368: plm-reg-process-a-check ............... Passed 0.04 sec Start 371: plm-reg-trans-a-check 450/507 Test #371: plm-reg-trans-a-check ................. Passed 0.05 sec Start 374: plm-reg-trans-b-check 451/507 Test #374: plm-reg-trans-b-check ................. Passed 0.23 sec Start 377: plm-reg-trans-mi-a-check 452/507 Test #377: plm-reg-trans-mi-a-check .............. Passed 0.12 sec Start 380: plm-reg-autores-a-check 453/507 Test #380: plm-reg-autores-a-check ............... Passed 0.09 sec Start 383: plm-reg-autores-b-check 454/507 Test #383: plm-reg-autores-b-check ............... Passed 0.09 sec Start 386: plm-compose-a-warp 455/507 Test #364: plm-reg-roi-e ......................... Passed 2.19 sec Start 388: plm-compose-a-check 456/507 Test #388: plm-compose-a-check ................... Passed 0.09 sec Start 390: plm-compose-b-warp 457/507 Test #365: plm-reg-stiffness-a ................... Passed 2.25 sec Start 392: plm-compose-b-check 458/507 Test #392: plm-compose-b-check ................... Passed 0.08 sec Start 394: plm-compose-c-warp 459/507 Test #386: plm-compose-a-warp .................... Passed 0.71 sec Start 395: plm-compose-c-stats 460/507 Test #394: plm-compose-c-warp .................... Passed 0.30 sec Start 398: plm-resample-a-check 461/507 Test #390: plm-compose-b-warp .................... Passed 0.49 sec Start 401: plm-resample-b-check 462/507 Test #395: plm-compose-c-stats ................... Passed 0.27 sec Start 404: plm-resample-c-check 463/507 Test #398: plm-resample-a-check .................. Passed 0.05 sec Start 407: plm-scale-a-check 464/507 Test #401: plm-resample-b-check .................. Passed 0.03 sec Start 410: plm-scale-vf-a-check 465/507 Test #404: plm-resample-c-check .................. Passed 0.07 sec Start 416: plm-thumbnail-a-check 466/507 Test #407: plm-scale-a-check ..................... Passed 0.05 sec Start 419: plm-thumbnail-b-check 467/507 Test #419: plm-thumbnail-b-check ................. Passed 0.02 sec Start 422: plm-thumbnail-c-check 468/507 Test #416: plm-thumbnail-a-check ................. Passed 0.04 sec Start 425: plm-union-check 469/507 Test #410: plm-scale-vf-a-check .................. Passed 0.13 sec Start 428: plm-threshold-a-check 470/507 Test #422: plm-thumbnail-c-check ................. Passed 0.10 sec Start 431: plm-threshold-b-check 471/507 Test #425: plm-union-check ....................... Passed 0.07 sec Start 434: plm-threshold-c-check 472/507 Test #428: plm-threshold-a-check ................. Passed 0.06 sec Start 435: plm-warp-pointset-a 473/507 Test #431: plm-threshold-b-check ................. Passed 0.06 sec Start 436: plm-warp-pointset-b 474/507 Test #434: plm-threshold-c-check ................. Passed 0.07 sec Start 437: plm-warp-pointset-c 475/507 Test #435: plm-warp-pointset-a ................... Passed 0.15 sec Start 440: plm-warp-a-check 476/507 Test #440: plm-warp-a-check ...................... Passed 0.05 sec Start 443: plm-warp-b-check-1 477/507 Test #443: plm-warp-b-check-1 .................... Passed 0.08 sec Start 445: plm-warp-b-check-2 478/507 Test #445: plm-warp-b-check-2 .................... Passed 0.10 sec Start 448: plm-warp-c-check 479/507 Test #437: plm-warp-pointset-c ................... Passed 0.37 sec Start 451: plm-warp-d-check 480/507 Test #448: plm-warp-c-check ...................... Passed 0.08 sec Start 454: plm-warp-f-check-1 481/507 Test #451: plm-warp-d-check ...................... Passed 0.10 sec Start 457: plm-warp-g-check-1 482/507 Test #436: plm-warp-pointset-b ................... Passed 0.50 sec Start 460: plm-warp-h-check-1 483/507 Test #460: plm-warp-h-check-1 .................... Passed 0.07 sec Start 463: plm-warp-i-check-1 484/507 Test #454: plm-warp-f-check-1 .................... Passed 0.14 sec Start 466: plm-xf-convert-c 485/507 Test #457: plm-warp-g-check-1 .................... Passed 0.17 sec Start 470: plm-xf-convert-d-warp-1-check 486/507 Test #463: plm-warp-i-check-1 .................... Passed 0.12 sec Start 473: plm-xf-convert-d-warp-2-check 487/507 Test #470: plm-xf-convert-d-warp-1-check ......... Passed 0.04 sec Start 474: plm-xf-convert-e 488/507 Test #473: plm-xf-convert-d-warp-2-check ......... Passed 0.02 sec Start 475: plm-xf-convert-f 489/507 Test #466: plm-xf-convert-c ...................... Passed 0.53 sec Start 476: plm-xf-convert-g 490/507 Test #474: plm-xf-convert-e ...................... Passed 0.59 sec Start 479: xf-invert-vf-zero-1-check 491/507 Test #479: xf-invert-vf-zero-1-check ............. Passed 0.09 sec Start 482: xf-invert-vf-trans-1-check 492/507 Test #482: xf-invert-vf-trans-1-check ............ Passed 0.03 sec Start 484: xf-invert-vrs-a-check 493/507 Test #484: xf-invert-vrs-a-check ................. Passed 0.03 sec Start 486: xf-invert-vrs-b-check 494/507 Test #486: xf-invert-vrs-b-check ................. Passed 0.03 sec Start 489: proton-dose-1-check 495/507 Test #475: plm-xf-convert-f ...................... Passed 0.79 sec Start 492: proton-dose-4a-check 496/507 Test #489: proton-dose-1-check ................... Passed 0.09 sec Start 495: proton-dose-4d-check 497/507 Test #492: proton-dose-4a-check .................. Passed 0.08 sec Start 498: proton-dose-5a-check 498/507 Test #476: plm-xf-convert-g ...................... Passed 0.48 sec Start 501: proton-dose-5d-check 499/507 Test #495: proton-dose-4d-check .................. Passed 0.06 sec Start 504: proton-dose-6a-check 500/507 Test #501: proton-dose-5d-check .................. Passed 0.04 sec Start 506: wed-b 501/507 Test #498: proton-dose-5a-check .................. Passed 0.09 sec Start 507: wed-c 502/507 Test #504: proton-dose-6a-check .................. Passed 0.06 sec 503/507 Test #507: wed-c ................................. Passed 2.03 sec 504/507 Test #506: wed-b ................................. Passed 5.33 sec 505/507 Test #411: plm-sift-a ............................ Passed 28.80 sec Start 412: plm-sift-a-check-1 Start 413: plm-sift-a-check-2 506/507 Test #413: plm-sift-a-check-2 .................... Passed 0.02 sec 507/507 Test #412: plm-sift-a-check-1 .................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 507 Total Test time (real) = 99.34 sec make[2]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/plastimatch-1.8.0\+dfsg.1/debian/plastimatch AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<>/plastimatch-1.8.0+dfsg.1 -B/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/depend make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/depend make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/depend make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/liblbfgs-1.9 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/devillard /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/devillard/CMakeFiles/devillard.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/inih-r29 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29 /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/inih-r29/CMakeFiles/inih.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/specfun /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/specfun/CMakeFiles/specfun.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/devillard/CMakeFiles/devillard.dir/build.make libs/devillard/CMakeFiles/devillard.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/specfun/CMakeFiles/specfun.dir/build.make libs/specfun/CMakeFiles/specfun.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build.make libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/inih-r29/CMakeFiles/inih.dir/build.make libs/inih-r29/CMakeFiles/inih.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/devillard/CMakeFiles/devillard.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/specfun/CMakeFiles/specfun.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/inih-r29/CMakeFiles/inih.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/liblbfgs-1.9/CMakeFiles/lbfgs.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 1%] Built target lbfgs [ 1%] Built target specfun make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/depend make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/depend [ 2%] Built target devillard make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/depend [ 3%] Built target inih make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/libs/nkidecompress /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/libs/nkidecompress/CMakeFiles/nkidecompress.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/sys /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/sys/CMakeFiles/plmsys.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/clp /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/clp/CMakeFiles/plmclp.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f libs/nkidecompress/CMakeFiles/nkidecompress.dir/build.make libs/nkidecompress/CMakeFiles/nkidecompress.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/clp/CMakeFiles/plmclp.dir/build.make src/plastimatch/clp/CMakeFiles/plmclp.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'libs/nkidecompress/CMakeFiles/nkidecompress.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target nkidecompress make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/clp/CMakeFiles/plmclp.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/sys/CMakeFiles/plmsys.dir/build.make src/plastimatch/sys/CMakeFiles/plmsys.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/sys/CMakeFiles/plmsys.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 3%] Built target plmclp [ 7%] Built target plmsys make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/base /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/base/CMakeFiles/plmbase.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/base/CMakeFiles/plmbase.dir/build.make src/plastimatch/base/CMakeFiles/plmbase.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/base/CMakeFiles/plmbase.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 42%] Built target plmbase make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/util /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/util/CMakeFiles/plmutil.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/util/CMakeFiles/plmutil.dir/build.make src/plastimatch/util/CMakeFiles/plmutil.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/util/CMakeFiles/plmutil.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 52%] Built target plmutil make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/depend make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/dose /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/dose/CMakeFiles/plmdose.dir/DependInfo.cmake --color= make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/reconstruct /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/dose/CMakeFiles/plmdose.dir/build.make src/plastimatch/dose/CMakeFiles/plmdose.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/register /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/register/CMakeFiles/plmregister.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build.make src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/dose/CMakeFiles/plmdose.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 57%] Built target plmdose make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/reconstruct/CMakeFiles/plmreconstruct.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 59%] Built target plmreconstruct make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/register/CMakeFiles/plmregister.dir/build.make src/plastimatch/register/CMakeFiles/plmregister.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/register/CMakeFiles/plmregister.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 73%] Built target plmregister make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/segment /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/segment/CMakeFiles/plmsegment.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/segment/CMakeFiles/plmsegment.dir/build.make src/plastimatch/segment/CMakeFiles/plmsegment.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/segment/CMakeFiles/plmsegment.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 78%] Built target plmsegment make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/depend make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/depend make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/sobp.dir/DependInfo.cmake --color= make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/compute_distance.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/cli /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/cli/CMakeFiles/plastimatch.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/sobp.dir/build.make src/plastimatch/standalone/CMakeFiles/sobp.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build.make src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_uid.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/sobp.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 79%] Built target sobp make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/depend [ 79%] Built target dicom_uid make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/wed.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dlib_train.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build.make src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/compute_distance.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 80%] Built target compute_distance make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dlib_train.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/cli/CMakeFiles/plastimatch.dir/build.make src/plastimatch/cli/CMakeFiles/plastimatch.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/wed.dir/build.make src/plastimatch/standalone/CMakeFiles/wed.dir/build [ 81%] Built target dlib_train make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build.make src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build.make src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/landmark_diff.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 81%] Built target landmark_diff make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bspline.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/wed.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 82%] Built target wed make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bspline.dir/build.make src/plastimatch/standalone/CMakeFiles/bspline.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/shuffle_mha.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 82%] Built target shuffle_mha make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bspline.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build.make src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build [ 83%] Built target bspline make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/demons.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/demons.dir/build.make src/plastimatch/standalone/CMakeFiles/demons.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build.make src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/cli/CMakeFiles/plastimatch.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 96%] Built target plastimatch make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/check_grad.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/demons.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 96%] Built target demons make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/merge_vfs.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 97%] Built target merge_vfs make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build.make src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/dicom_info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/check_grad.dir/build.make src/plastimatch/standalone/CMakeFiles/check_grad.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/hnd_to_pfm.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 97%] Built target hnd_to_pfm make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/depend make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' cd /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/plastimatch-1.8.0+dfsg.1 /<>/plastimatch-1.8.0+dfsg.1/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/xvi_archive.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 98%] Built target xvi_archive make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build.make src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make -f src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build.make src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 98%] Built target bragg_curve make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/check_grad.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [ 99%] Built target check_grad make[4]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/plastimatch/standalone/CMakeFiles/dicom_info.dir/build'. make[4]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' [100%] Built target dicom_info make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELEASE" -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/README.TXT -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/share/doc/plastimatch/COPYRIGHT.TXT -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libinih.a -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmbase.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmsys.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmutil.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/bin/plastimatch -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmdose.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmreconstruct.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmregister.so -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so.1.8 -- Installing: /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libplmsegment.so make[2]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1/obj-x86_64-linux-gnu' rm -rfv /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/*.a removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libdevillard.a' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libinih.a' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/liblbfgs.a' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libnkidecompress.a' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/libspecfun.a' rm -rfv /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfig.cmake' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchConfigVersion.cmake' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends.cmake' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch/PlastimatchLibraryDepends-release.cmake' removed directory '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake/plastimatch' removed directory '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/lib/cmake' rm -rfv /<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_point.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_boundary.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_file.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_header.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload_legacy.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_bbox.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_clone.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_sro.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/file_util.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/parameter_parser.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/path_util.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset_warp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_io.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_warp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_adjust.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_return_code.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/aperture.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_conv.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate_macros.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_histogram_matching.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_fill.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/mc_dose.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_cosines.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_callback.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_module.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_warp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_roi.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_header.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_extract.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dose.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_convolve.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/geometry_chooser.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_endian.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pwlut.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_limit.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_jacobian.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_interpolate.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_grad.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/astroid_dose.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_control_pt.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_shift_scale.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_math.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/compiler_warnings.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/cxt_extract.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct_transform.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/string_util.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_img_extract.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/raw_pointset.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dice_statistics.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gamma_dose_comparison.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image_dir.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_util.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_itk.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_resample.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hnd_io_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_adjust.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_type.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_convert.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_cast.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gaussian.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_origin.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace_probe.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/slice_list.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtplan.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/metadata.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_util.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmsys_config.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image_set.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/nki_io.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmbase_config.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/double_align8.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_volume_header.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/hausdorff_distance.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plmutil_config.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_image.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_gaussian.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xpm.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_dir.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_uid_prefix.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_volume.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_header_compare.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_pointset.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_exception.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf_stats.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_header.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/option_range.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_type.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform_legacy.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xf_invert.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dicom_probe.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/smart_pointer.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterize_slice.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_stats.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/gabor.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dir_list.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rpl_volume_lut.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_config.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/print_and_exit.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_boundary_behavior.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_warp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_accumulate.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rasterizer.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_sleep.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_resample.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rdd.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss_contour.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xform.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_directions.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/delayload.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_int.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/direction_matrices.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ss_list_io.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/clamp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_ct.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtss.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_local_intensity_correction.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_macros.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rt_study_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/make_string.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtss.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_matrix.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_warp.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_type.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_studyset.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/threading.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_center.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/segmentation.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/volume_macros.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_metadata.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dlib_threads.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/float_pair_list.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/vf.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_series_map.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dvh.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_rtdose.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/proj_image.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_metadata.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/bspline_xform_legacy.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_timer_p.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_stats.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_load.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_fwrite.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/logfile.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_save.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkAndConstantToImageFilter.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/pointset.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_trace.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_demographic.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ray_data.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/thumbnail.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_plan.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_point.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/ramp_filter.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rt_study_metadata.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/mha_io.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_region.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_structures.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/xio_patient.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/dcmtk_uid.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/rtplan_beam.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/interpolate.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itkClampCastImageFilter.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/image_stats.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_config.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_va_copy.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/itk_image_create.h' removed '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch/plm_file_format.h' removed directory '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include/plastimatch' removed directory '/<>/plastimatch-1.8.0+dfsg.1/debian/plastimatch/usr/include' make[1]: Leaving directory '/<>/plastimatch-1.8.0+dfsg.1' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing plastimatch-dbgsym (in debian/.debhelper/plastimatch/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing plastimatch (in debian/plastimatch); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/plastimatch/dbgsym-root/DEBIAN/control, package plastimatch-dbgsym, directory debian/.debhelper/plastimatch/dbgsym-root dpkg-deb: building package 'plastimatch-dbgsym' in 'debian/.debhelper/scratch-space/build-plastimatch/plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/plastimatch/DEBIAN/control, package plastimatch, directory debian/plastimatch pkgstripfiles: Truncating usr/share/doc/plastimatch/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package plastimatch ... pkgstripfiles: No PNG files. dpkg-deb: building package 'plastimatch' in '../plastimatch_1.8.0+dfsg.1-2build1_amd64.deb'. Renaming plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.deb to plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../plastimatch_1.8.0+dfsg.1-2build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200324-1555 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ plastimatch_1.8.0+dfsg.1-2build1_amd64.changes: ----------------------------------------------- Format: 1.8 Date: Tue, 24 Mar 2020 15:18:05 +0100 Source: plastimatch Binary: plastimatch Architecture: amd64 Version: 1.8.0+dfsg.1-2build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: plastimatch - medical image reconstruction and registration Changes: plastimatch (1.8.0+dfsg.1-2build1) focal; urgency=medium . * No-change rebuild for libgcc-s1 package name change. Checksums-Sha1: c711c1dae20e73a19f931baa623f7d0b867ef092 59650056 plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.ddeb 89bb98ce433266f32d9a5495ed8495c04acffd76 9058 plastimatch_1.8.0+dfsg.1-2build1_amd64.buildinfo 7b7e29d3be49b80dca11c49c626397dce4a27f5f 2698956 plastimatch_1.8.0+dfsg.1-2build1_amd64.deb Checksums-Sha256: e58dad608ef57fbd281ce95345771f8f1d6c30c44842c298af43bcfa43a3b5b6 59650056 plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.ddeb 668b0eee6a379e61dd1fdb0f04a742489ce16058e837ce002d4572af8dd36b7a 9058 plastimatch_1.8.0+dfsg.1-2build1_amd64.buildinfo b2ca9353b0ea945eeabd99bbadf88d230afe70b6ea7db059879441b5fc74f7f6 2698956 plastimatch_1.8.0+dfsg.1-2build1_amd64.deb Files: 9ef1838ba4b1367659bf2340ca5cc9ba 59650056 debug optional plastimatch-dbgsym_1.8.0+dfsg.1-2build1_amd64.ddeb 55b40c83ecd1b17842e89d0dc35277fa 9058 science optional plastimatch_1.8.0+dfsg.1-2build1_amd64.buildinfo 31a0846a1f70fc537edbbefad264db82 2698956 science optional plastimatch_1.8.0+dfsg.1-2build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ plastimatch_1.8.0+dfsg.1-2build1_amd64.deb ------------------------------------------ new debian package, version 2.0. size 2698956 bytes: control archive=1884 bytes. 2186 bytes, 39 lines control 926 bytes, 14 lines md5sums 328 bytes, 7 lines shlibs 72 bytes, 2 lines triggers Package: plastimatch Version: 1.8.0+dfsg.1-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 14700 Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libdcmtk14, libdlib19, libfftw3-double3 (>= 3.3.5), libgcc-s1 (>= 4.0), libgomp1 (>= 4.9), libinsighttoolkit4.13, liblapack3 | liblapack.so.3, libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://plastimatch.org Description: medical image reconstruction and registration Plastimatch is an open source software for deformable image registration. It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography(PET). Software features include: * B-spline method for deformable image registration (GPU and multicore accelerated), including support for image masking, landmark penalties, and regularization * Demons method for deformable image registration (GPU accelerated) * Multi-atlas segmentation * ITK-based algorithms for translation, rigid, affine, multiple demons methods, and B-spline registration * Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types * Landmark-based deformable registration using thinplate splines for global registration * Landmark-based deformable registration using radial basis functions for local corrections * Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze * Extensive toolchain for radiotherapy research, including support for DICOM, DICOM-RT, DICOM SRO, XiO file format, gamma analysis, contour manipulation, contour overlap analysis, and vector field analysis Plastimatch also features two handy utilities which are not directly related to image registration: * FDK cone-beam CT reconstruction (GPU and multicore accelerated) * Digitally reconstructed radiograph (DRR) generation (GPU and multicore accelerated) drwxr-xr-x root/root 0 2020-03-24 14:18 ./ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/bin/ -rwxr-xr-x root/root 1416024 2020-03-24 14:18 ./usr/bin/plastimatch drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/lib/ lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmbase.so -> libplmbase.so.1.8 -rw-r--r-- root/root 7031408 2020-03-24 14:18 ./usr/lib/libplmbase.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmdose.so -> libplmdose.so.1.8 -rw-r--r-- root/root 256336 2020-03-24 14:18 ./usr/lib/libplmdose.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmreconstruct.so -> libplmreconstruct.so.1.8 -rw-r--r-- root/root 47424 2020-03-24 14:18 ./usr/lib/libplmreconstruct.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmregister.so -> libplmregister.so.1.8 -rw-r--r-- root/root 2116080 2020-03-24 14:18 ./usr/lib/libplmregister.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmsegment.so -> libplmsegment.so.1.8 -rw-r--r-- root/root 1784496 2020-03-24 14:18 ./usr/lib/libplmsegment.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmsys.so -> libplmsys.so.1.8 -rw-r--r-- root/root 92480 2020-03-24 14:18 ./usr/lib/libplmsys.so.1.8 lrwxrwxrwx root/root 0 2020-03-24 14:18 ./usr/lib/libplmutil.so -> libplmutil.so.1.8 -rw-r--r-- root/root 2243408 2020-03-24 14:18 ./usr/lib/libplmutil.so.1.8 drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/doc/plastimatch/ -rw-r--r-- root/root 555 2019-04-30 14:47 ./usr/share/doc/plastimatch/COPYRIGHT.TXT -rw-r--r-- root/root 1014 2019-04-30 14:47 ./usr/share/doc/plastimatch/README.TXT -rw-r--r-- root/root 1508 2020-03-24 14:18 ./usr/share/doc/plastimatch/changelog.Debian.gz -rw-r--r-- root/root 11741 2020-01-20 13:54 ./usr/share/doc/plastimatch/copyright drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 384 2020-01-20 13:54 ./usr/share/lintian/overrides/plastimatch drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-24 14:18 ./usr/share/man/man1/ -rw-r--r-- root/root 19957 2020-03-24 14:18 ./usr/share/man/man1/plastimatch.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 1682140 Build-Time: 2280 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 99 Job: plastimatch_1.8.0+dfsg.1-2build1.dsc Machine Architecture: amd64 Package: plastimatch Package-Time: 2382 Source-Version: 1.8.0+dfsg.1-2build1 Space: 1682140 Status: successful Version: 1.8.0+dfsg.1-2build1 -------------------------------------------------------------------------------- Finished at 20200324-1555 Build needed 00:39:42, 1682140k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18888332 Scanning for processes to kill in build PACKAGEBUILD-18888332